AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1398110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398110 MtrunA17_Chr5g0397821 95.312 128 6 0 49 176 114 241 1.97e-88 258
Msa1398110 MtrunA17_Chr5g0397821 98.000 50 1 0 1 50 1 50 1.84e-16 74.3
Msa1398110 MtrunA17_Chr8g0386341 42.534 221 59 5 6 160 30 248 3.71e-51 164
Msa1398110 MtrunA17_Chr5g0397831 57.851 121 42 1 49 160 116 236 8.69e-45 147
Msa1398110 MtrunA17_Chr1g0180121 45.082 122 56 3 50 160 121 242 1.62e-29 108
Msa1398110 MtrunA17_Chr5g0424221 50.420 119 48 5 51 159 122 239 1.63e-29 109
Msa1398110 MtrunA17_Chr1g0180161 43.511 131 61 4 50 169 121 249 2.66e-29 108
Msa1398110 MtrunA17_Chr6g0482741 46.774 124 53 4 49 160 118 240 2.27e-28 105
Msa1398110 MtrunA17_Chr8g0371771 47.414 116 54 3 51 159 128 243 2.61e-28 107
Msa1398110 MtrunA17_Chr4g0037331 47.059 119 55 4 48 159 122 239 7.40e-28 106
Msa1398110 MtrunA17_Chr2g0311521 45.902 122 55 5 49 160 127 247 1.55e-27 108
Msa1398110 MtrunA17_Chr1g0154591 43.548 124 59 4 50 163 113 235 3.42e-27 102
Msa1398110 MtrunA17_Chr7g0265011 45.082 122 56 3 50 160 166 287 5.67e-27 103
Msa1398110 MtrunA17_Chr5g0405611 47.500 120 51 6 51 161 193 309 1.04e-26 103
Msa1398110 MtrunA17_Chr2g0312181 43.443 122 58 3 50 160 122 243 1.62e-26 100
Msa1398110 MtrunA17_Chr1g0156711 41.803 122 58 3 51 159 124 245 3.47e-26 101
Msa1398110 MtrunA17_Chr3g0142781 41.463 123 59 3 51 160 127 249 7.51e-26 100
Msa1398110 MtrunA17_Chr4g0037351 44.000 125 55 4 51 161 126 249 9.24e-26 100
Msa1398110 MtrunA17_Chr1g0179851 43.443 122 58 3 50 160 118 239 1.06e-25 98.6
Msa1398110 MtrunA17_Chr2g0311551 43.089 123 59 4 49 161 124 245 2.58e-25 101
Msa1398110 MtrunA17_Chr5g0428801 40.152 132 62 4 45 160 120 250 3.24e-25 99.0
Msa1398110 MtrunA17_Chr8g0351851 41.803 122 59 4 49 159 117 237 2.24e-24 95.1
Msa1398110 MtrunA17_Chr1g0179891 42.623 122 59 3 50 160 116 237 3.17e-24 94.7
Msa1398110 MtrunA17_Chr8g0352471 42.623 122 57 5 51 160 127 247 3.44e-24 96.3
Msa1398110 MtrunA17_Chr5g0405581 42.063 126 56 5 51 160 127 251 3.57e-24 95.9
Msa1398110 MtrunA17_Chr8g0392961 41.935 124 59 4 49 160 123 245 3.70e-24 94.7
Msa1398110 MtrunA17_Chr3g0112091 42.857 119 57 4 52 160 120 237 3.80e-24 94.7
Msa1398110 MtrunA17_Chr1g0180231 42.623 122 59 3 50 160 121 242 5.07e-24 94.4
Msa1398110 MtrunA17_Chr1g0179871 42.623 122 59 3 50 160 121 242 5.07e-24 94.4
Msa1398110 MtrunA17_Chr1g0180221 42.623 122 59 3 50 160 161 282 6.50e-24 95.1
Msa1398110 MtrunA17_Chr3g0141341 42.276 123 59 5 49 160 110 231 2.43e-23 92.4
Msa1398110 MtrunA17_Chr8g0357311 39.344 122 61 4 51 160 127 247 1.12e-22 91.3
Msa1398110 MtrunA17_Chr8g0371781 39.683 126 58 4 51 159 129 253 2.55e-22 90.9
Msa1398110 MtrunA17_Chr2g0311561 38.525 122 63 4 51 161 113 233 3.53e-21 87.8
Msa1398110 MtrunA17_Chr7g0239131 40.336 119 60 4 52 160 125 242 4.56e-20 84.0
Msa1398110 MtrunA17_Chr6g0452331 35.115 131 71 4 45 162 125 254 2.59e-18 79.7
Msa1398110 MtrunA17_Chr4g0031221 34.127 126 68 4 49 159 126 251 1.11e-17 77.8
Msa1398110 MtrunA17_Chr1g0180181 41.758 91 42 3 88 169 18 106 7.33e-17 72.4
Msa1398110 MtrunA17_Chr2g0311501 32.090 134 75 5 51 170 61 192 2.64e-15 70.5
Msa1398110 MtrunA17_Chr2g0311531 37.795 127 62 7 49 170 119 233 5.21e-15 70.5
Msa1398110 MtrunA17_Chr2g0309611 29.565 115 70 3 53 158 137 249 5.49e-12 62.4
Msa1398110 MtrunA17_Chr1g0179911 31.405 121 68 4 53 160 120 238 1.32e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398110 AT4G11650.1 75.000 116 25 2 51 163 115 229 2.61e-57 180
Msa1398110 AT4G11650.1 59.184 49 19 1 1 49 1 48 8.65e-11 59.3
Msa1398110 AT1G75050.1 45.528 123 54 4 50 160 122 243 3.02e-29 108
Msa1398110 AT4G38660.1 50.427 117 50 4 51 160 130 245 1.76e-28 108
Msa1398110 AT4G38660.2 50.427 117 50 4 51 160 108 223 2.53e-28 107
Msa1398110 AT1G75030.1 43.411 129 60 4 44 160 116 243 5.71e-28 105
Msa1398110 AT1G75800.1 43.200 125 56 3 51 160 124 248 7.90e-28 106
Msa1398110 AT4G38670.3 43.089 123 57 4 51 160 125 247 8.19e-28 105
Msa1398110 AT4G38670.1 43.089 123 57 4 51 160 125 247 8.19e-28 105
Msa1398110 AT4G38670.2 43.089 123 57 4 51 160 109 231 1.13e-27 104
Msa1398110 AT1G77700.3 47.059 119 52 4 51 159 154 271 1.46e-27 105
Msa1398110 AT1G20030.1 43.200 125 56 3 51 160 104 228 1.93e-27 104
Msa1398110 AT1G77700.2 47.059 119 52 4 51 159 154 271 2.13e-27 105
Msa1398110 AT1G20030.2 43.200 125 56 3 51 160 121 245 2.61e-27 104
Msa1398110 AT2G17860.1 42.969 128 56 4 49 160 123 249 3.39e-27 103
Msa1398110 AT4G36000.2 46.087 115 55 4 51 160 26 138 3.45e-27 102
Msa1398110 AT4G36000.1 46.087 115 55 4 51 160 26 138 3.45e-27 102
Msa1398110 AT1G77700.1 47.059 119 52 4 51 159 182 299 4.04e-27 105
Msa1398110 AT4G36010.1 43.284 134 58 5 51 167 125 257 1.13e-26 102
Msa1398110 AT4G36010.2 43.284 134 58 5 51 167 125 257 1.13e-26 102
Msa1398110 AT1G19320.1 42.063 126 62 4 44 159 122 246 1.55e-26 101
Msa1398110 AT5G24620.3 44.615 130 52 5 49 160 200 327 3.77e-26 103
Msa1398110 AT5G24620.4 44.615 130 52 5 49 160 179 306 4.86e-26 103
Msa1398110 AT1G75040.1 42.975 121 58 4 50 160 120 239 6.00e-26 99.8
Msa1398110 AT5G24620.1 44.615 130 52 5 49 160 124 251 6.18e-26 102
Msa1398110 AT4G24180.6 45.000 120 55 5 50 160 139 256 9.44e-25 97.1
Msa1398110 AT4G24180.5 45.000 120 55 5 50 160 134 251 1.07e-24 96.7
Msa1398110 AT4G24180.1 45.000 120 55 5 50 160 139 256 1.82e-24 97.4
Msa1398110 AT4G24180.2 45.000 120 55 5 50 160 134 251 1.90e-24 97.1
Msa1398110 AT1G73620.1 43.548 124 57 5 49 160 138 260 2.95e-24 95.9
Msa1398110 AT1G18250.2 42.742 124 58 5 49 160 118 240 3.60e-24 95.1
Msa1398110 AT1G18250.1 42.742 124 58 5 49 160 117 239 3.68e-24 95.1
Msa1398110 AT5G38280.2 35.000 140 76 3 50 174 125 264 2.35e-21 90.5
Msa1398110 AT5G38280.1 35.000 140 76 3 50 174 125 264 2.81e-21 90.5
Msa1398110 AT5G24620.2 41.667 132 57 5 47 160 5 134 9.00e-21 87.4
Msa1398110 AT4G24180.3 35.135 148 75 5 49 176 138 284 1.14e-18 82.0
Msa1398110 AT4G24180.4 35.135 148 75 5 49 176 133 279 1.24e-18 81.6
Msa1398110 AT1G70250.1 33.333 126 68 2 51 160 242 367 7.52e-17 77.8
Msa1398110 AT5G40020.1 33.333 126 72 4 51 165 129 253 1.43e-16 75.1
Msa1398110 AT5G02140.1 37.815 119 63 4 52 160 124 241 8.55e-16 73.6
Msa1398110 AT4G18250.1 36.364 121 69 3 53 165 157 277 8.98e-16 74.7
Msa1398110 AT5G02140.2 37.815 119 63 4 52 160 124 241 1.02e-15 72.8
Msa1398110 AT2G28790.1 32.540 126 74 3 45 159 123 248 1.22e-15 72.4
Msa1398110 AT2G28790.2 32.540 126 74 3 45 159 148 273 1.52e-15 72.8
Msa1398110 AT4G18253.1 31.356 118 71 3 53 160 121 238 8.36e-13 64.7

Find 52 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATTTCTTCCCTCTTAA+TGG 0.218122 tig0022240:-81576 Msa1398110:CDS
AAGGAGTGAGGGTGAGTAGT+AGG 0.288125 tig0022240:+84771 None:intergenic
TCGAGGCGGCGACCACCGCC+TGG 0.296708 tig0022240:+84686 None:intergenic
ACAATTGCCCTTACACCGTT+TGG 0.330621 tig0022240:-84721 Msa1398110:CDS
AATGAATATTGTTGCACTAA+TGG 0.346009 tig0022240:-81450 Msa1398110:CDS
CCTTGAGTCCTCAATTCCTT+AGG 0.351684 tig0022240:+81507 None:intergenic
GCAGCTGCCCAAACGGTGTA+AGG 0.366048 tig0022240:+84713 None:intergenic
TACACACTGGTCTGGTTTAG+TGG 0.389430 tig0022240:+81264 None:intergenic
ATTAGTGCAACAATATTCAT+TGG 0.423057 tig0022240:+81452 None:intergenic
AGTTGCACTGCCGATATTAA+CGG 0.432233 tig0022240:-81537 Msa1398110:CDS
TGGGCTAGCAGCTGCCCAAA+CGG 0.440365 tig0022240:+84706 None:intergenic
CAATTGCCCTTACACCGTTT+GGG 0.441211 tig0022240:-84720 Msa1398110:CDS
CATTTCAATACACACTGGTC+TGG 0.444048 tig0022240:+81256 None:intergenic
TTATGACATCCACCATTAAG+AGG 0.444579 tig0022240:+81564 None:intergenic
AGTACTTTCACTTGTCCTGC+TGG 0.444797 tig0022240:-81339 Msa1398110:CDS
TCCATGTTTGACCGCGGTCG+AGG 0.458130 tig0022240:+84669 None:intergenic
AGGAGTGAGGGTGAGTAGTA+GGG 0.465064 tig0022240:+84772 None:intergenic
AGGGCACTGTCCGTTAATAT+CGG 0.472010 tig0022240:+81527 None:intergenic
CTTGAGTCCTCAATTCCTTA+GGG 0.473616 tig0022240:+81508 None:intergenic
AAGTGGGTCCACAGCTTCCT+TGG 0.484930 tig0022240:+81427 None:intergenic
TACTTGTTGGATCATCTTGA+GGG 0.496803 tig0022240:+81358 None:intergenic
ATTGTTGACGATCTCAAAGT+TGG 0.500722 tig0022240:+84739 None:intergenic
GCAGCTGCTAGCCCAGGCGG+TGG 0.514788 tig0022240:-84698 Msa1398110:CDS
GTTTGGGCAGCTGCTAGCCC+AGG 0.516906 tig0022240:-84704 Msa1398110:CDS
CGATGGTTTCAACATCCCAA+TGG 0.524206 tig0022240:-81595 Msa1398110:CDS
TACGACATCTCACTTGTCGA+TGG 0.528359 tig0022240:-81612 Msa1398110:CDS
GGACAAGTGAAAGTACTTGT+TGG 0.531593 tig0022240:+81345 None:intergenic
GATTTCTTCCCTCTTAATGG+TGG 0.535456 tig0022240:-81573 Msa1398110:CDS
GTACTTGTTGGATCATCTTG+AGG 0.536813 tig0022240:+81357 None:intergenic
GTGGACCCACTTATTTCTCA+AGG 0.546200 tig0022240:-81416 Msa1398110:CDS
TCAAAGTTGGCTGCTTGTGA+AGG 0.547034 tig0022240:+84752 None:intergenic
TTAAGAGGGAAGAAATCCAT+TGG 0.547257 tig0022240:+81579 None:intergenic
TTTAGTGGCATCTCAATATG+AGG 0.552341 tig0022240:+81279 None:intergenic
TAAGAGGGAAGAAATCCATT+GGG 0.555277 tig0022240:+81580 None:intergenic
CGAGGCGGCGACCACCGCCT+GGG 0.558748 tig0022240:+84687 None:intergenic
GACAGTGCCCTAAGGAATTG+AGG 0.563268 tig0022240:-81515 Msa1398110:CDS
GGGAGCATAGTGTGAATGTG+AGG 0.572658 tig0022240:+84792 None:intergenic
TATTGTTGCACTAATGGCCA+AGG 0.575870 tig0022240:-81444 Msa1398110:CDS
CAGCTGCCCAAACGGTGTAA+GGG 0.577110 tig0022240:+84714 None:intergenic
CCTAAGGAATTGAGGACTCA+AGG 0.579944 tig0022240:-81507 Msa1398110:CDS
TGGGCAGCTGCTAGCCCAGG+CGG 0.593879 tig0022240:-84701 Msa1398110:CDS
GGTGGTCGCCGCCTCGACCG+CGG 0.599782 tig0022240:-84680 Msa1398110:intron
TATGACATCCACCATTAAGA+GGG 0.601387 tig0022240:+81565 None:intergenic
ATGTTTGACCGCGGTCGAGG+CGG 0.603815 tig0022240:+84672 None:intergenic
TGGCTGCTTGTGAAGGAGTG+AGG 0.609598 tig0022240:+84759 None:intergenic
GGCTGCTTGTGAAGGAGTGA+GGG 0.609799 tig0022240:+84760 None:intergenic
ACTTTGTAGTTAGATCCAGC+AGG 0.625794 tig0022240:+81324 None:intergenic
TATTAACGGACAGTGCCCTA+AGG 0.626097 tig0022240:-81523 Msa1398110:CDS
ACTAATGGCCAAGGAAGCTG+TGG 0.677244 tig0022240:-81435 Msa1398110:CDS
ATACACATTTCAATACACAC+TGG 0.687621 tig0022240:+81251 None:intergenic
TCAATATGAGGAGCTCCAAG+AGG 0.715579 tig0022240:+81291 None:intergenic
AAGGAATTGAGGACTCAAGG+TGG 0.730754 tig0022240:-81504 Msa1398110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTCTTTTACTATAAATAT+AGG - tig0022240:81719-81738 Msa1398110:intron 15.0%
!!! GTTTCTTTTACTATAAATAT+AGG - tig0022240:81719-81738 Msa1398110:intron 15.0%
!!! ATTTTTCAGAAACGTATTTT+TGG - tig0022240:81670-81689 Msa1398110:intron 20.0%
!!! TTTTTCAGAAACGTATTTTT+GGG - tig0022240:81671-81690 Msa1398110:intron 20.0%
!!! CAGATTTGTTACAATTTTAT+GGG - tig0022240:81695-81714 Msa1398110:intron 20.0%
!!! ATTTTTCAGAAACGTATTTT+TGG - tig0022240:81670-81689 Msa1398110:intron 20.0%
!!! TTTTTCAGAAACGTATTTTT+GGG - tig0022240:81671-81690 Msa1398110:intron 20.0%
!!! CAGATTTGTTACAATTTTAT+GGG - tig0022240:81695-81714 Msa1398110:intron 20.0%
!!! TTATTTCTCAAGGTTTTTTA+AGG - tig0022240:84663-84682 Msa1398110:intron 20.0%
! CCATAAAATTGTAACAAATC+TGG + tig0022240:81697-81716 None:intergenic 25.0%
!!! CCAGATTTGTTACAATTTTA+TGG - tig0022240:81694-81713 Msa1398110:intron 25.0%
! TATCAAAATAGTCTGATACA+AGG + tig0022240:81745-81764 None:intergenic 25.0%
!!! ACTATTTTGATAGAGATAGA+GGG - tig0022240:81753-81772 Msa1398110:intron 25.0%
! GTTACAAAAGAGATTTCAAT+GGG + tig0022240:81963-81982 None:intergenic 25.0%
! TTTGTATATGACAAAGTCTT+TGG - tig0022240:82524-82543 Msa1398110:intron 25.0%
!!! ATAAGTAAAGTTGTTGCTTT+AGG + tig0022240:82563-82582 None:intergenic 25.0%
! CCATAAAATTGTAACAAATC+TGG + tig0022240:81697-81716 None:intergenic 25.0%
!!! CCAGATTTGTTACAATTTTA+TGG - tig0022240:81694-81713 Msa1398110:intron 25.0%
! TATCAAAATAGTCTGATACA+AGG + tig0022240:81745-81764 None:intergenic 25.0%
!!! ACTATTTTGATAGAGATAGA+GGG - tig0022240:81753-81772 Msa1398110:intron 25.0%
! GTTACAAAAGAGATTTCAAT+GGG + tig0022240:81963-81982 None:intergenic 25.0%
! ATTAGTGCAACAATATTCAT+TGG + tig0022240:84620-84639 None:intergenic 25.0%
! AATGAATATTGTTGCACTAA+TGG - tig0022240:84619-84638 Msa1398110:intron 25.0%
! AAAAACCTTGAGAAATAAGT+GGG + tig0022240:84661-84680 None:intergenic 25.0%
! AAAAAACCTTGAGAAATAAG+TGG + tig0022240:84662-84681 None:intergenic 25.0%
TTGTGAAAGTGACTCAAAAT+TGG - tig0022240:81492-81511 Msa1398110:CDS 30.0%
! CTTTCAGCAAACATCAATTT+TGG + tig0022240:81528-81547 None:intergenic 30.0%
! TGTTTGCTGAAAGTACAAAT+CGG - tig0022240:81535-81554 Msa1398110:CDS 30.0%
!!! GACTATTTTGATAGAGATAG+AGG - tig0022240:81752-81771 Msa1398110:intron 30.0%
!!! CTATTTTGATAGAGATAGAG+GGG - tig0022240:81754-81773 Msa1398110:intron 30.0%
!!! TATTTTGATAGAGATAGAGG+GGG - tig0022240:81755-81774 Msa1398110:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG - tig0022240:81817-81836 Msa1398110:intron 30.0%
CGTTACAAAAGAGATTTCAA+TGG + tig0022240:81964-81983 None:intergenic 30.0%
TAACGTTACTCATCATATAG+TGG - tig0022240:81979-81998 Msa1398110:intron 30.0%
! TTACTCATCATATAGTGGAA+CGG - tig0022240:81984-82003 Msa1398110:intron 30.0%
!! TGTTCCATACACTTTGATTT+TGG - tig0022240:82121-82140 Msa1398110:intron 30.0%
ACAACCAAAATCAAAGTGTA+TGG + tig0022240:82128-82147 None:intergenic 30.0%
AAAGGATAATCAAGTACCAT+GGG - tig0022240:82240-82259 Msa1398110:intron 30.0%
AGCAACAACTTTACTTATTC+AGG - tig0022240:82565-82584 Msa1398110:intron 30.0%
ACAACTTTACTTATTCAGGA+TGG - tig0022240:82569-82588 Msa1398110:intron 30.0%
! CAACAAAATCATTGGTGATT+TGG - tig0022240:82629-82648 Msa1398110:intron 30.0%
TAAGAATACTCATGATCTAC+CGG - tig0022240:82810-82829 Msa1398110:intron 30.0%
! CAAACTACTCAAGGAATTTT+AGG + tig0022240:83430-83449 None:intergenic 30.0%
CTAAAATTCCTTGAGTAGTT+TGG - tig0022240:83428-83447 Msa1398110:intron 30.0%
ACCTTAATCTCTTCAATCAT+CGG + tig0022240:83486-83505 None:intergenic 30.0%
! AGCAAGGTGTTATGTTAAAT+GGG - tig0022240:83553-83572 Msa1398110:intron 30.0%
TTGTGAAAGTGACTCAAAAT+TGG - tig0022240:81492-81511 Msa1398110:CDS 30.0%
! CTTTCAGCAAACATCAATTT+TGG + tig0022240:81528-81547 None:intergenic 30.0%
! TGTTTGCTGAAAGTACAAAT+CGG - tig0022240:81535-81554 Msa1398110:CDS 30.0%
!!! GACTATTTTGATAGAGATAG+AGG - tig0022240:81752-81771 Msa1398110:intron 30.0%
!!! CTATTTTGATAGAGATAGAG+GGG - tig0022240:81754-81773 Msa1398110:intron 30.0%
!!! TATTTTGATAGAGATAGAGG+GGG - tig0022240:81755-81774 Msa1398110:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG - tig0022240:81817-81836 Msa1398110:intron 30.0%
CGTTACAAAAGAGATTTCAA+TGG + tig0022240:81964-81983 None:intergenic 30.0%
TAACGTTACTCATCATATAG+TGG - tig0022240:81979-81998 Msa1398110:intron 30.0%
! TTACTCATCATATAGTGGAA+CGG - tig0022240:81984-82003 Msa1398110:intron 30.0%
!! TGTTCCATACACTTTGATTT+TGG - tig0022240:82121-82140 Msa1398110:intron 30.0%
ACAACCAAAATCAAAGTGTA+TGG + tig0022240:82128-82147 None:intergenic 30.0%
! GAATTGGTTTAACGCATATT+CGG + tig0022240:84422-84441 None:intergenic 30.0%
GAATATGCGTTAAACCAATT+CGG - tig0022240:84421-84440 Msa1398110:intron 30.0%
AGAAATCTTGATTTCCGAAT+TGG + tig0022240:84438-84457 None:intergenic 30.0%
! TGGTCTTAAAAACTGTACAA+GGG + tig0022240:84600-84619 None:intergenic 30.0%
!! TTGGTCTTAAAAACTGTACA+AGG + tig0022240:84601-84620 None:intergenic 30.0%
!!! TCTCAAGGTTTTTTAAGGAT+AGG - tig0022240:84668-84687 Msa1398110:intron 30.0%
ATTGTTGACGATCTCAAAGT+TGG + tig0022240:81333-81352 None:intergenic 35.0%
AGTGACTCAAAATTGGAGTT+TGG - tig0022240:81499-81518 Msa1398110:CDS 35.0%
! GTTTTCTGTTCGGGAAAAAT+CGG - tig0022240:81605-81624 Msa1398110:CDS 35.0%
AAAATAACAGCACGCGAAAT+CGG + tig0022240:81655-81674 None:intergenic 35.0%
AGAAAGGCAACAACAAAACT+AGG - tig0022240:81793-81812 Msa1398110:intron 35.0%
GAAAGGCAACAACAAAACTA+GGG - tig0022240:81794-81813 Msa1398110:intron 35.0%
! TTTGAAGGTTGATTCACCTT+GGG - tig0022240:81855-81874 Msa1398110:intron 35.0%
AATCCTAATAGTGTTTCCCA+AGG + tig0022240:81874-81893 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG - tig0022240:81882-81901 Msa1398110:intron 35.0%
!! AAGAATTTGTTGACCCAGTT+CGG + tig0022240:82046-82065 None:intergenic 35.0%
AGAAAACAACAGCGAGAAAA+AGG + tig0022240:82082-82101 None:intergenic 35.0%
!!! TCGCTGTTGTTTTCTACTTT+TGG - tig0022240:82087-82106 Msa1398110:intron 35.0%
! TCCACACATCAAGTTGTTAT+TGG - tig0022240:82163-82182 Msa1398110:intron 35.0%
ACCAATAACAACTTGATGTG+TGG + tig0022240:82167-82186 None:intergenic 35.0%
CAAAGGATAATCAAGTACCA+TGG - tig0022240:82239-82258 Msa1398110:intron 35.0%
TGGGATATTGAGAAGTTTAC+CGG - tig0022240:82270-82289 Msa1398110:intron 35.0%
! TTTACCGGAGATAACGATTT+TGG - tig0022240:82285-82304 Msa1398110:intron 35.0%
! TTACCGGAGATAACGATTTT+GGG - tig0022240:82286-82305 Msa1398110:intron 35.0%
TAACCCAAAATCGTTATCTC+CGG + tig0022240:82292-82311 None:intergenic 35.0%
!!! GAGATAACGATTTTGGGTTA+TGG - tig0022240:82292-82311 Msa1398110:intron 35.0%
!!! TAACGATTTTGGGTTATGGA+AGG - tig0022240:82296-82315 Msa1398110:intron 35.0%
! AAAGTGTGAGAAAGCTTTGA+AGG - tig0022240:82347-82366 Msa1398110:intron 35.0%
!! AAGTGTGAGAAAGCTTTGAA+GGG - tig0022240:82348-82367 Msa1398110:intron 35.0%
!!! AGTTTTGAGAGAAGCAACAA+AGG - tig0022240:82464-82483 Msa1398110:intron 35.0%
GGTAAAGTTAAAGACTGTCA+TGG - tig0022240:82590-82609 Msa1398110:intron 35.0%
GTGGAGTTCAACAAAATCAT+TGG - tig0022240:82621-82640 Msa1398110:intron 35.0%
TTAAACACTCAACATCAACC+TGG - tig0022240:82776-82795 Msa1398110:intron 35.0%
AAGGGATTTCTTCATGAAGA+CGG - tig0022240:82976-82995 Msa1398110:intron 35.0%
AGGTTGAAGAATGTATAGCA+CGG - tig0022240:83011-83030 Msa1398110:intron 35.0%
GAATTACCCTAAAAGTCCAA+GGG - tig0022240:83040-83059 Msa1398110:intron 35.0%
! TGGATTACTCTAAAAGCCAA+GGG - tig0022240:83230-83249 Msa1398110:intron 35.0%
CAAACTACACTAGGAATTTC+AGG + tig0022240:83334-83353 None:intergenic 35.0%
CTGAAATTCCTAGTGTAGTT+TGG - tig0022240:83332-83351 Msa1398110:intron 35.0%
TCCGATGATTGAAGAGATTA+AGG - tig0022240:83482-83501 Msa1398110:intron 35.0%
GAGATTAAGGTGTAAACTTG+TGG - tig0022240:83495-83514 Msa1398110:intron 35.0%
! CAGCAAGGTGTTATGTTAAA+TGG - tig0022240:83552-83571 Msa1398110:intron 35.0%
AATGGGCATCATCACTAATT+TGG - tig0022240:83570-83589 Msa1398110:intron 35.0%
! TCATCACTAATTTGGAGTCA+AGG - tig0022240:83578-83597 Msa1398110:intron 35.0%
AGTGACTCAAAATTGGAGTT+TGG - tig0022240:81499-81518 Msa1398110:CDS 35.0%
! GTTTTCTGTTCGGGAAAAAT+CGG - tig0022240:81605-81624 Msa1398110:CDS 35.0%
AAAATAACAGCACGCGAAAT+CGG + tig0022240:81655-81674 None:intergenic 35.0%
AGAAAGGCAACAACAAAACT+AGG - tig0022240:81793-81812 Msa1398110:intron 35.0%
GAAAGGCAACAACAAAACTA+GGG - tig0022240:81794-81813 Msa1398110:intron 35.0%
! TTTGAAGGTTGATTCACCTT+GGG - tig0022240:81855-81874 Msa1398110:intron 35.0%
AATCCTAATAGTGTTTCCCA+AGG + tig0022240:81874-81893 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG - tig0022240:81882-81901 Msa1398110:intron 35.0%
!! AAGAATTTGTTGACCCAGTT+CGG + tig0022240:82046-82065 None:intergenic 35.0%
AGAAAACAACAGCGAGAAAA+AGG + tig0022240:82082-82101 None:intergenic 35.0%
!!! TCGCTGTTGTTTTCTACTTT+TGG - tig0022240:82087-82106 Msa1398110:intron 35.0%
! TCCACACATCAAGTTGTTAT+TGG - tig0022240:82163-82182 Msa1398110:intron 35.0%
ACCAATAACAACTTGATGTG+TGG + tig0022240:82167-82186 None:intergenic 35.0%
TAAGAGGGAAGAAATCCATT+GGG + tig0022240:84492-84511 None:intergenic 35.0%
TTAAGAGGGAAGAAATCCAT+TGG + tig0022240:84493-84512 None:intergenic 35.0%
ATGGATTTCTTCCCTCTTAA+TGG - tig0022240:84493-84512 Msa1398110:intron 35.0%
TATGACATCCACCATTAAGA+GGG + tig0022240:84507-84526 None:intergenic 35.0%
TTATGACATCCACCATTAAG+AGG + tig0022240:84508-84527 None:intergenic 35.0%
! TACTTGTTGGATCATCTTGA+GGG + tig0022240:84714-84733 None:intergenic 35.0%
!! AAAGTTGTTTTCTGTCCTCT+TGG - tig0022240:84763-84782 Msa1398110:CDS 35.0%
TTTAGTGGCATCTCAATATG+AGG + tig0022240:84793-84812 None:intergenic 35.0%
AACACCATCAAAGTTGCAAC+CGG + tig0022240:81474-81493 None:intergenic 40.0%
GACTCAAAATTGGAGTTTGG+AGG - tig0022240:81502-81521 Msa1398110:CDS 40.0%
! TTGCTGAAAGTACAAATCGG+TGG - tig0022240:81538-81557 Msa1398110:CDS 40.0%
!! CTTTTGGGAGGTTTTCTGTT+CGG - tig0022240:81595-81614 Msa1398110:CDS 40.0%
!! TTTTGGGAGGTTTTCTGTTC+GGG - tig0022240:81596-81615 Msa1398110:CDS 40.0%
GCTGAAACAAGGGTTTAGAA+AGG - tig0022240:81777-81796 Msa1398110:intron 40.0%
TCTCTTGGCAACAAACACTA+GGG - tig0022240:81832-81851 Msa1398110:intron 40.0%
CAACAAACACTAGGGTTTGA+AGG - tig0022240:81840-81859 Msa1398110:intron 40.0%
! GTTTGAAGGTTGATTCACCT+TGG - tig0022240:81854-81873 Msa1398110:intron 40.0%
TCACCTTGGGAAACACTATT+AGG - tig0022240:81868-81887 Msa1398110:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG - tig0022240:81888-81907 Msa1398110:intron 40.0%
! TCATCATATAGTGGAACGGA+GGG - tig0022240:81988-82007 Msa1398110:intron 40.0%
TTCATCGAATCCGCAACAAT+TGG - tig0022240:82195-82214 Msa1398110:intron 40.0%
TGGGTTATGGAAGGTAAAGA+TGG - tig0022240:82305-82324 Msa1398110:intron 40.0%
ATGGAAGGTAAAGATGGAAG+CGG - tig0022240:82311-82330 Msa1398110:intron 40.0%
! TGGTGATTTGGAGAACATTG+AGG - tig0022240:82641-82660 Msa1398110:intron 40.0%
AAGGTGATGTTTCTCACCTT+GGG - tig0022240:82715-82734 Msa1398110:intron 40.0%
AGGTTCAAGGAAGACATAGT+GGG - tig0022240:82842-82861 Msa1398110:intron 40.0%
! GTACTCATTTGCTAGTTGAG+AGG - tig0022240:82867-82886 Msa1398110:intron 40.0%
! TCATTTGCTAGTTGAGAGGT+TGG - tig0022240:82871-82890 Msa1398110:intron 40.0%
GATTTCTTCATGAAGACGGA+AGG - tig0022240:82980-82999 Msa1398110:intron 40.0%
GCTATACATTCTTCAACCTC+CGG + tig0022240:83010-83029 None:intergenic 40.0%
GGAATTACCCTAAAAGTCCA+AGG - tig0022240:83039-83058 Msa1398110:intron 40.0%
! CAATCACCCTTGGACTTTTA+GGG + tig0022240:83049-83068 None:intergenic 40.0%
TGTCTCGTATTGAAGAGGTA+TGG - tig0022240:83100-83119 Msa1398110:intron 40.0%
! GTGGATTACTCTAAAAGCCA+AGG - tig0022240:83229-83248 Msa1398110:intron 40.0%
TCTAAAAGCCAAGGGTGATT+GGG - tig0022240:83238-83257 Msa1398110:intron 40.0%
TGGGAACAAGTAGATCTTCA+AGG - tig0022240:83257-83276 Msa1398110:intron 40.0%
CAAGTAGATCTTCAAGGAAG+CGG - tig0022240:83263-83282 Msa1398110:intron 40.0%
AAGTAGATCTTCAAGGAAGC+GGG - tig0022240:83264-83283 Msa1398110:intron 40.0%
TGTCTCGTATTGAAGAGGTA+TGG - tig0022240:83100-83119 Msa1398110:intron 40.0%
CCTTGTATCCAAACTACACT+AGG + tig0022240:83343-83362 None:intergenic 40.0%
CCTAGTGTAGTTTGGATACA+AGG - tig0022240:83340-83359 Msa1398110:intron 40.0%
TTGGACACAAGGATCTTCAA+AGG - tig0022240:83447-83466 Msa1398110:intron 40.0%
TGGACACAAGGATCTTCAAA+GGG - tig0022240:83448-83467 Msa1398110:intron 40.0%
TGTAAACTTGTGGAGCTACT+TGG - tig0022240:83505-83524 Msa1398110:intron 40.0%
! TCACTAATTTGGAGTCAAGG+TGG - tig0022240:83581-83600 Msa1398110:intron 40.0%
GACTCAAAATTGGAGTTTGG+AGG - tig0022240:81502-81521 Msa1398110:CDS 40.0%
! TTGCTGAAAGTACAAATCGG+TGG - tig0022240:81538-81557 Msa1398110:CDS 40.0%
!! CTTTTGGGAGGTTTTCTGTT+CGG - tig0022240:81595-81614 Msa1398110:CDS 40.0%
!! TTTTGGGAGGTTTTCTGTTC+GGG - tig0022240:81596-81615 Msa1398110:CDS 40.0%
GCTGAAACAAGGGTTTAGAA+AGG - tig0022240:81777-81796 Msa1398110:intron 40.0%
TCTCTTGGCAACAAACACTA+GGG - tig0022240:81832-81851 Msa1398110:intron 40.0%
CAACAAACACTAGGGTTTGA+AGG - tig0022240:81840-81859 Msa1398110:intron 40.0%
! GTTTGAAGGTTGATTCACCT+TGG - tig0022240:81854-81873 Msa1398110:intron 40.0%
TCACCTTGGGAAACACTATT+AGG - tig0022240:81868-81887 Msa1398110:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG - tig0022240:81888-81907 Msa1398110:intron 40.0%
! TCATCATATAGTGGAACGGA+GGG - tig0022240:81988-82007 Msa1398110:intron 40.0%
TCCAAATTGACCTAGTATGG+GGG + tig0022240:84141-84160 None:intergenic 40.0%
GTCCAAATTGACCTAGTATG+GGG + tig0022240:84142-84161 None:intergenic 40.0%
GGTCCAAATTGACCTAGTAT+GGG + tig0022240:84143-84162 None:intergenic 40.0%
ATTCGGCTAATGTGTTTGGT+GGG + tig0022240:84405-84424 None:intergenic 40.0%
TATTCGGCTAATGTGTTTGG+TGG + tig0022240:84406-84425 None:intergenic 40.0%
GCATATTCGGCTAATGTGTT+TGG + tig0022240:84409-84428 None:intergenic 40.0%
GATTTCTTCCCTCTTAATGG+TGG - tig0022240:84496-84515 Msa1398110:intron 40.0%
AGTTGCACTGCCGATATTAA+CGG - tig0022240:84532-84551 Msa1398110:intron 40.0%
CTTGAGTCCTCAATTCCTTA+GGG + tig0022240:84564-84583 None:intergenic 40.0%
TATTGTTGCACTAATGGCCA+AGG - tig0022240:84625-84644 Msa1398110:intron 40.0%
! GTACTTGTTGGATCATCTTG+AGG + tig0022240:84715-84734 None:intergenic 40.0%
!! GGACAAGTGAAAGTACTTGT+TGG + tig0022240:84727-84746 None:intergenic 40.0%
ACTTTGTAGTTAGATCCAGC+AGG + tig0022240:84748-84767 None:intergenic 40.0%
TCAAAGTTGGCTGCTTGTGA+AGG + tig0022240:81320-81339 None:intergenic 45.0%
ACAATTGCCCTTACACCGTT+TGG - tig0022240:81348-81367 Msa1398110:CDS 45.0%
CAATTGCCCTTACACCGTTT+GGG - tig0022240:81349-81368 Msa1398110:CDS 45.0%
TCCCAAAAGGCAGCCAAAAT+CGG + tig0022240:81584-81603 None:intergenic 45.0%
CGAACAGAAAACCTCCCAAA+AGG + tig0022240:81597-81616 None:intergenic 45.0%
TTCTGTTCGGGAAAAATCGG+TGG - tig0022240:81608-81627 Msa1398110:CDS 45.0%
GTCTCTTGGCAACAAACACT+AGG - tig0022240:81831-81850 Msa1398110:intron 45.0%
GGATTGAGTCTCTTGGTTAC+GGG - tig0022240:81889-81908 Msa1398110:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG - tig0022240:81917-81936 Msa1398110:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG - tig0022240:81920-81939 Msa1398110:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG - tig0022240:81921-81940 Msa1398110:intron 45.0%
! CTCATCATATAGTGGAACGG+AGG - tig0022240:81987-82006 Msa1398110:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG + tig0022240:82023-82042 None:intergenic 45.0%
GTCCAAATTGACCTAGTCTG+GGG + tig0022240:82024-82043 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG + tig0022240:82025-82044 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG - tig0022240:82029-82048 Msa1398110:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG - tig0022240:82030-82049 Msa1398110:intron 45.0%
CAACTTGATGTGTGGAGCAA+GGG + tig0022240:82159-82178 None:intergenic 45.0%
ACAACTTGATGTGTGGAGCA+AGG + tig0022240:82160-82179 None:intergenic 45.0%
AAGTACCATGGGTTCGAAGT+GGG - tig0022240:82251-82270 Msa1398110:intron 45.0%
AATATCCCACTTCGAACCCA+TGG + tig0022240:82259-82278 None:intergenic 45.0%
!! GAGAAAGCTTTGAAGGGTGA+AGG - tig0022240:82354-82373 Msa1398110:intron 45.0%
CTCTCAAAACTTTATCCCCG+AGG + tig0022240:82455-82474 None:intergenic 45.0%
! TGACAAAGTCTTTGGCTCGT+CGG - tig0022240:82532-82551 Msa1398110:intron 45.0%
AGAACATTGAGGTGCGTCTT+GGG - tig0022240:82652-82671 Msa1398110:intron 45.0%
!! TGGTGCTGTTTAGAGGATGA+AGG - tig0022240:82696-82715 Msa1398110:intron 45.0%
GAAGGTGATGTTTCTCACCT+TGG - tig0022240:82714-82733 Msa1398110:intron 45.0%
AGGTGATGTTTCTCACCTTG+GGG - tig0022240:82716-82735 Msa1398110:intron 45.0%
! TACTCATGATCTACCGGTTG+AGG - tig0022240:82816-82835 Msa1398110:intron 45.0%
GAGGTTCAAGGAAGACATAG+TGG - tig0022240:82841-82860 Msa1398110:intron 45.0%
TTAGGTGGAGTTGAACACAC+CGG - tig0022240:82904-82923 Msa1398110:intron 45.0%
TATGCTCTAGTGGTGAGCAA+GGG - tig0022240:82958-82977 Msa1398110:intron 45.0%
AGAATGTATAGCACGGCTTG+TGG - tig0022240:83018-83037 Msa1398110:intron 45.0%
! CCAATCACCCTTGGACTTTT+AGG + tig0022240:83050-83069 None:intergenic 45.0%
CCTAAAAGTCCAAGGGTGAT+TGG - tig0022240:83047-83066 Msa1398110:intron 45.0%
TGGATGCAAGGTGATCTTCA+AGG - tig0022240:83067-83086 Msa1398110:intron 45.0%
CAAGGTGATCTTCAAGGAAG+CGG - tig0022240:83073-83092 Msa1398110:intron 45.0%
AAGGTGATCTTCAAGGAAGC+GGG - tig0022240:83074-83093 Msa1398110:intron 45.0%
GGAGATGTCTCGTATTGAAG+AGG - tig0022240:83095-83114 Msa1398110:intron 45.0%
! AGAGGTATGGTGAATGCTTG+TGG - tig0022240:83113-83132 Msa1398110:intron 45.0%
! CCAACTACGCTAGGAGTTTT+AGG + tig0022240:83144-83163 None:intergenic 45.0%
CCTAAAACTCCTAGCGTAGT+TGG - tig0022240:83141-83160 Msa1398110:intron 45.0%
ATGTCTTCCGCCTTCTTGAA+GGG + tig0022240:83177-83196 None:intergenic 45.0%
AATGTCTTCCGCCTTCTTGA+AGG + tig0022240:83178-83197 None:intergenic 45.0%
! CTCTAAAAGCCAAGGGTGAT+TGG - tig0022240:83237-83256 Msa1398110:intron 45.0%
TACTTGTTCCCAATCACCCT+TGG + tig0022240:83249-83268 None:intergenic 45.0%
GGAGATGTCTCGTATTGAAG+AGG - tig0022240:83095-83114 Msa1398110:intron 45.0%
GGATACAAGGATCTTCGAGA+AGG - tig0022240:83353-83372 Msa1398110:intron 45.0%
TACAAGGATCTTCGAGAAGG+CGG - tig0022240:83356-83375 Msa1398110:intron 45.0%
ACCTTAACCTCTTCAGCCAT+CGG + tig0022240:83390-83409 None:intergenic 45.0%
GAGGTTAAGGTGTGTACTTG+TGG - tig0022240:83399-83418 Msa1398110:intron 45.0%
CCTTGTGTCCAAACTACTCA+AGG + tig0022240:83439-83458 None:intergenic 45.0%
CCTTGAGTAGTTTGGACACA+AGG - tig0022240:83436-83455 Msa1398110:intron 45.0%
GGACACAAGGATCTTCAAAG+GGG - tig0022240:83449-83468 Msa1398110:intron 45.0%
TCCCAAAAGGCAGCCAAAAT+CGG + tig0022240:81584-81603 None:intergenic 45.0%
CGAACAGAAAACCTCCCAAA+AGG + tig0022240:81597-81616 None:intergenic 45.0%
TTCTGTTCGGGAAAAATCGG+TGG - tig0022240:81608-81627 Msa1398110:CDS 45.0%
GTCTCTTGGCAACAAACACT+AGG - tig0022240:81831-81850 Msa1398110:intron 45.0%
GGATTGAGTCTCTTGGTTAC+GGG - tig0022240:81889-81908 Msa1398110:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG - tig0022240:81917-81936 Msa1398110:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG - tig0022240:81920-81939 Msa1398110:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG - tig0022240:81921-81940 Msa1398110:intron 45.0%
! CTCATCATATAGTGGAACGG+AGG - tig0022240:81987-82006 Msa1398110:intron 45.0%
TCCCCCATACTAGGTCAATT+TGG - tig0022240:84137-84156 Msa1398110:intron 45.0%
CGGTCCAAATTGACCTAGTA+TGG + tig0022240:84144-84163 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG - tig0022240:82029-82048 Msa1398110:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG - tig0022240:82030-82049 Msa1398110:intron 45.0%
CAACTTGATGTGTGGAGCAA+GGG + tig0022240:82159-82178 None:intergenic 45.0%
ACAACTTGATGTGTGGAGCA+AGG + tig0022240:82160-82179 None:intergenic 45.0%
TTCATCGAATCCGCAACAGA+TGG - tig0022240:84313-84332 Msa1398110:intron 45.0%
TGCAATCACCTGTTTGGCAA+CGG + tig0022240:84351-84370 None:intergenic 45.0%
!! TGGACTCCAATGTACTGGTT+GGG - tig0022240:84375-84394 Msa1398110:intron 45.0%
TACGACATCTCACTTGTCGA+TGG - tig0022240:84457-84476 Msa1398110:intron 45.0%
CGATGGTTTCAACATCCCAA+TGG - tig0022240:84474-84493 Msa1398110:intron 45.0%
!! AGGGCACTGTCCGTTAATAT+CGG + tig0022240:84545-84564 None:intergenic 45.0%
! TATTAACGGACAGTGCCCTA+AGG - tig0022240:84546-84565 Msa1398110:intron 45.0%
CCTTGAGTCCTCAATTCCTT+AGG + tig0022240:84565-84584 None:intergenic 45.0%
CCTAAGGAATTGAGGACTCA+AGG - tig0022240:84562-84581 Msa1398110:intron 45.0%
AAGGAATTGAGGACTCAAGG+TGG - tig0022240:84565-84584 Msa1398110:intron 45.0%
! GTGGACCCACTTATTTCTCA+AGG - tig0022240:84653-84672 Msa1398110:intron 45.0%
AGTACTTTCACTTGTCCTGC+TGG - tig0022240:84730-84749 Msa1398110:CDS 45.0%
TCAATATGAGGAGCTCCAAG+AGG + tig0022240:84781-84800 None:intergenic 45.0%
! TACACACTGGTCTGGTTTAG+TGG + tig0022240:84808-84827 None:intergenic 45.0%
! GGGAGCATAGTGTGAATGTG+AGG + tig0022240:81280-81299 None:intergenic 50.0%
AGGAGTGAGGGTGAGTAGTA+GGG + tig0022240:81300-81319 None:intergenic 50.0%
AAGGAGTGAGGGTGAGTAGT+AGG + tig0022240:81301-81320 None:intergenic 50.0%
AGAGGTTCCATGTTTGACCG+CGG + tig0022240:81409-81428 None:intergenic 50.0%
CGGTCAAACATGGAACCTCT+GGG - tig0022240:81409-81428 Msa1398110:CDS 50.0%
TGGAACCTCTGGGTTAATCC+TGG - tig0022240:81419-81438 Msa1398110:CDS 50.0%
TACCGCCATGGCTCGTATTT+GGG - tig0022240:81442-81461 Msa1398110:CDS 50.0%
GTACAAATCGGTGGCCGATT+TGG - tig0022240:81547-81566 Msa1398110:CDS 50.0%
!! CGGTGGCCGATTTGGAAAAT+CGG - tig0022240:81555-81574 Msa1398110:CDS 50.0%
!! TGGCCGATTTGGAAAATCGG+TGG - tig0022240:81558-81577 Msa1398110:CDS 50.0%
!!! CGGCCACCGATTTTCCAAAT+CGG + tig0022240:81564-81583 None:intergenic 50.0%
!! GGAAAATCGGTGGCCGATTT+TGG - tig0022240:81568-81587 Msa1398110:CDS 50.0%
!!! GCCGATTTTGGCTGCCTTTT+GGG - tig0022240:81580-81599 Msa1398110:CDS 50.0%
!!! GATTTTGGCTGCCTTTTGGG+AGG - tig0022240:81583-81602 Msa1398110:CDS 50.0%
GGAAAAATCGGTGGCCGATT+GGG - tig0022240:81617-81636 Msa1398110:CDS 50.0%
GGTGGCCGATTGGGAAAAAT+CGG - tig0022240:81626-81645 Msa1398110:intron 50.0%
!!! GGCCACCGATTTTTCCCAAT+CGG + tig0022240:81634-81653 None:intergenic 50.0%
AGATAGAGGGGGCTGAAACA+AGG - tig0022240:81766-81785 Msa1398110:intron 50.0%
GATAGAGGGGGCTGAAACAA+GGG - tig0022240:81767-81786 Msa1398110:intron 50.0%
AGTCTCTTGGTTACGGGAAG+AGG - tig0022240:81895-81914 Msa1398110:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG - tig0022240:82019-82038 Msa1398110:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG + tig0022240:82026-82045 None:intergenic 50.0%
ATCCTTTGACCTTTGCCCCA+CGG + tig0022240:82227-82246 None:intergenic 50.0%
CAAGTACCATGGGTTCGAAG+TGG - tig0022240:82250-82269 Msa1398110:intron 50.0%
GAAGGGTGAAGGTTCGTTAC+CGG - tig0022240:82365-82384 Msa1398110:intron 50.0%
! AGTGCCATTGTCTTGTGCCT+CGG - tig0022240:82435-82454 Msa1398110:intron 50.0%
ATACAACCGCGACATCGATG+TGG - tig0022240:82487-82506 Msa1398110:intron 50.0%
CTTTGACCACATCGATGTCG+CGG + tig0022240:82496-82515 None:intergenic 50.0%
GACTGTCATGGAGCTACTTG+TGG - tig0022240:82602-82621 Msa1398110:intron 50.0%
GAGAACATTGAGGTGCGTCT+TGG - tig0022240:82651-82670 Msa1398110:intron 50.0%
GAACATTGAGGTGCGTCTTG+GGG - tig0022240:82653-82672 Msa1398110:intron 50.0%
!! GATGGTGTGGTGCTGTTTAG+AGG - tig0022240:82689-82708 Msa1398110:intron 50.0%
GGTGATGTTTCTCACCTTGG+GGG - tig0022240:82717-82736 Msa1398110:intron 50.0%
CACTCAACATCAACCTGGAG+AGG - tig0022240:82781-82800 Msa1398110:intron 50.0%
TCAACATCAACCTGGAGAGG+CGG - tig0022240:82784-82803 Msa1398110:intron 50.0%
! TCATGATCTACCGGTTGAGG+TGG - tig0022240:82819-82838 Msa1398110:intron 50.0%
GAGGTTGGAAGCTCAGCTTT+AGG - tig0022240:82886-82905 Msa1398110:intron 50.0%
!! GTTGGAAGCTCAGCTTTAGG+TGG - tig0022240:82889-82908 Msa1398110:intron 50.0%
TAGGTGGAGTTGAACACACC+GGG - tig0022240:82905-82924 Msa1398110:intron 50.0%
CTCCATAGTCGTACCATTCC+CGG + tig0022240:82926-82945 None:intergenic 50.0%
GTACGACTATGGAGGACCTT+GGG - tig0022240:82932-82951 Msa1398110:intron 50.0%
CTATGCTCTAGTGGTGAGCA+AGG - tig0022240:82957-82976 Msa1398110:intron 50.0%
!! CATGAAGACGGAAGGCATTC+CGG - tig0022240:82988-83007 Msa1398110:intron 50.0%
TCCAAGGGTGATTGGATGCA+AGG - tig0022240:83055-83074 Msa1398110:intron 50.0%
ACCTTGCATCCAATCACCCT+TGG + tig0022240:83059-83078 None:intergenic 50.0%
ACTGCAAGGACCCTTCAAGA+AGG - tig0022240:83164-83183 Msa1398110:intron 50.0%
AGAAGGCGGAAGACATTCTG+AGG - tig0022240:83181-83200 Msa1398110:intron 50.0%
GAAGGCGGAAGACATTCTGA+GGG - tig0022240:83182-83201 Msa1398110:intron 50.0%
! AAGACATTCTGAGGGCTGGA+GGG - tig0022240:83190-83209 Msa1398110:intron 50.0%
GGGGTTGAGGTGTATACTTG+TGG - tig0022240:83210-83229 Msa1398110:intron 50.0%
AGACATTCCGATGGCTGAAG+AGG - tig0022240:83380-83399 Msa1398110:intron 50.0%
TCCGATGGCTGAAGAGGTTA+AGG - tig0022240:83386-83405 Msa1398110:intron 50.0%
CACAAGGATCTTCAAAGGGG+CGG - tig0022240:83452-83471 Msa1398110:intron 50.0%
!! TGTGGAGCTACTTGGTGTAG+TGG - tig0022240:83513-83532 Msa1398110:intron 50.0%
!! GTGGAGCTACTTGGTGTAGT+GGG - tig0022240:83514-83533 Msa1398110:intron 50.0%
!! ACTTGGTGTAGTGGGAAGCA+AGG - tig0022240:83522-83541 Msa1398110:intron 50.0%
! CTTGGTGTAGTGGGAAGCAA+GGG - tig0022240:83523-83542 Msa1398110:intron 50.0%
AAGCAAGGGAAAGAGCAGCA+AGG - tig0022240:83537-83556 Msa1398110:intron 50.0%
GTACAAATCGGTGGCCGATT+TGG - tig0022240:81547-81566 Msa1398110:CDS 50.0%
!! CGGTGGCCGATTTGGAAAAT+CGG - tig0022240:81555-81574 Msa1398110:CDS 50.0%
!! TGGCCGATTTGGAAAATCGG+TGG - tig0022240:81558-81577 Msa1398110:CDS 50.0%
!!! CGGCCACCGATTTTCCAAAT+CGG + tig0022240:81564-81583 None:intergenic 50.0%
!! GGAAAATCGGTGGCCGATTT+TGG - tig0022240:81568-81587 Msa1398110:CDS 50.0%
!!! GCCGATTTTGGCTGCCTTTT+GGG - tig0022240:81580-81599 Msa1398110:CDS 50.0%
!!! GATTTTGGCTGCCTTTTGGG+AGG - tig0022240:81583-81602 Msa1398110:CDS 50.0%
GGAAAAATCGGTGGCCGATT+GGG - tig0022240:81617-81636 Msa1398110:CDS 50.0%
GGTGGCCGATTGGGAAAAAT+CGG - tig0022240:81626-81645 Msa1398110:intron 50.0%
!!! GGCCACCGATTTTTCCCAAT+CGG + tig0022240:81634-81653 None:intergenic 50.0%
AGATAGAGGGGGCTGAAACA+AGG - tig0022240:81766-81785 Msa1398110:intron 50.0%
GATAGAGGGGGCTGAAACAA+GGG - tig0022240:81767-81786 Msa1398110:intron 50.0%
AGTCTCTTGGTTACGGGAAG+AGG - tig0022240:81895-81914 Msa1398110:intron 50.0%
TGCCAAACAGGTGATTGCAC+CGG - tig0022240:84352-84371 Msa1398110:intron 50.0%
ACCAGTACATTGGAGTCCAC+CGG + tig0022240:84374-84393 None:intergenic 50.0%
! GTGGACTCCAATGTACTGGT+TGG - tig0022240:84374-84393 Msa1398110:intron 50.0%
!! GGACTCCAATGTACTGGTTG+GGG - tig0022240:84376-84395 Msa1398110:intron 50.0%
GACAGTGCCCTAAGGAATTG+AGG - tig0022240:84554-84573 Msa1398110:intron 50.0%
ACTAATGGCCAAGGAAGCTG+TGG - tig0022240:84634-84653 Msa1398110:intron 50.0%
GGCTGCTTGTGAAGGAGTGA+GGG + tig0022240:81312-81331 None:intergenic 55.0%
TGGCTGCTTGTGAAGGAGTG+AGG + tig0022240:81313-81332 None:intergenic 55.0%
CAGCTGCCCAAACGGTGTAA+GGG + tig0022240:81358-81377 None:intergenic 55.0%
GCGGTCAAACATGGAACCTC+TGG - tig0022240:81408-81427 Msa1398110:CDS 55.0%
CGGTACCAGGATTAACCCAG+AGG + tig0022240:81427-81446 None:intergenic 55.0%
GGTTAATCCTGGTACCGCCA+TGG - tig0022240:81430-81449 Msa1398110:CDS 55.0%
GTACCGCCATGGCTCGTATT+TGG - tig0022240:81441-81460 Msa1398110:CDS 55.0%
ACCGCCATGGCTCGTATTTG+GGG - tig0022240:81443-81462 Msa1398110:CDS 55.0%
ACCCCAAATACGAGCCATGG+CGG + tig0022240:81447-81466 None:intergenic 55.0%
!! CGCACCGGTTGCAACTTTGA+TGG - tig0022240:81467-81486 Msa1398110:CDS 55.0%
!!! GGCCGATTTTGGCTGCCTTT+TGG - tig0022240:81579-81598 Msa1398110:CDS 55.0%
GGGAAAAATCGGTGGCCGAT+TGG - tig0022240:81616-81635 Msa1398110:CDS 55.0%
GGCCGATTGGGAAAAATCGG+TGG - tig0022240:81629-81648 Msa1398110:intron 55.0%
TCTTGGTTACGGGAAGAGGC+TGG - tig0022240:81899-81918 Msa1398110:intron 55.0%
CTTGGTTACGGGAAGAGGCT+GGG - tig0022240:81900-81919 Msa1398110:intron 55.0%
TACGGGAAGAGGCTGGGATT+TGG - tig0022240:81906-81925 Msa1398110:intron 55.0%
ACGGGAAGAGGCTGGGATTT+GGG - tig0022240:81907-81926 Msa1398110:intron 55.0%
TTTGACCTTTGCCCCACGGT+GGG + tig0022240:82223-82242 None:intergenic 55.0%
!! GAAGACCGAGATGGTGGACA+AGG - tig0022240:82407-82426 Msa1398110:intron 55.0%
GCACAAGACAATGGCACTCC+TGG + tig0022240:82433-82452 None:intergenic 55.0%
! GTGCCATTGTCTTGTGCCTC+GGG - tig0022240:82436-82455 Msa1398110:intron 55.0%
TGCCATTGTCTTGTGCCTCG+GGG - tig0022240:82437-82456 Msa1398110:intron 55.0%
ATCCCCGAGGCACAAGACAA+TGG + tig0022240:82442-82461 None:intergenic 55.0%
ATTCTTACCACCGCCTCTCC+AGG + tig0022240:82797-82816 None:intergenic 55.0%
! TGATCTACCGGTTGAGGTGG+AGG - tig0022240:82822-82841 Msa1398110:intron 55.0%
CCTTGAACCTCCACCTCAAC+CGG + tig0022240:82832-82851 None:intergenic 55.0%
GGAGTTGAACACACCGGGAA+TGG - tig0022240:82910-82929 Msa1398110:intron 55.0%
CACCGGGAATGGTACGACTA+TGG - tig0022240:82921-82940 Msa1398110:intron 55.0%
CGGGAATGGTACGACTATGG+AGG - tig0022240:82924-82943 Msa1398110:intron 55.0%
GGTACGACTATGGAGGACCT+TGG - tig0022240:82931-82950 Msa1398110:intron 55.0%
CCACTAGAGCATAGCACCCA+AGG + tig0022240:82951-82970 None:intergenic 55.0%
! CCTTGGGTGCTATGCTCTAG+TGG - tig0022240:82948-82967 Msa1398110:intron 55.0%
CCTTGCAGTCCAACTACGCT+AGG + tig0022240:83153-83172 None:intergenic 55.0%
CCTAGCGTAGTTGGACTGCA+AGG - tig0022240:83150-83169 Msa1398110:intron 55.0%
GCAAGGACCCTTCAAGAAGG+CGG - tig0022240:83167-83186 Msa1398110:intron 55.0%
! GAAGACATTCTGAGGGCTGG+AGG - tig0022240:83189-83208 Msa1398110:intron 55.0%
! AGACATTCTGAGGGCTGGAG+GGG - tig0022240:83191-83210 Msa1398110:intron 55.0%
GAAGGCGGAAGACATTCCGA+TGG - tig0022240:83371-83390 Msa1398110:intron 55.0%
AGGATCTTCAAAGGGGCGGA+AGG - tig0022240:83456-83475 Msa1398110:intron 55.0%
!!! GGCCGATTTTGGCTGCCTTT+TGG - tig0022240:81579-81598 Msa1398110:CDS 55.0%
GGGAAAAATCGGTGGCCGAT+TGG - tig0022240:81616-81635 Msa1398110:CDS 55.0%
GGCCGATTGGGAAAAATCGG+TGG - tig0022240:81629-81648 Msa1398110:intron 55.0%
TCTTGGTTACGGGAAGAGGC+TGG - tig0022240:81899-81918 Msa1398110:intron 55.0%
CTTGGTTACGGGAAGAGGCT+GGG - tig0022240:81900-81919 Msa1398110:intron 55.0%
TACGGGAAGAGGCTGGGATT+TGG - tig0022240:81906-81925 Msa1398110:intron 55.0%
ACGGGAAGAGGCTGGGATTT+GGG - tig0022240:81907-81926 Msa1398110:intron 55.0%
GAATCCGCAACAGATGGCAG+CGG - tig0022240:84319-84338 Msa1398110:intron 55.0%
CACCGGTGCAATCACCTGTT+TGG + tig0022240:84357-84376 None:intergenic 55.0%
CAAACAGGTGATTGCACCGG+TGG - tig0022240:84355-84374 Msa1398110:intron 55.0%
! ACCGGTGGACTCCAATGTAC+TGG - tig0022240:84370-84389 Msa1398110:intron 55.0%
GGACACCCCAACCAGTACAT+TGG + tig0022240:84384-84403 None:intergenic 55.0%
AAGTGGGTCCACAGCTTCCT+TGG + tig0022240:84645-84664 None:intergenic 55.0%
GCAGCTGCCCAAACGGTGTA+AGG + tig0022240:81359-81378 None:intergenic 60.0%
!! TGGGCTAGCAGCTGCCCAAA+CGG + tig0022240:81366-81385 None:intergenic 60.0%
ATGTTTGACCGCGGTCGAGG+CGG + tig0022240:81400-81419 None:intergenic 60.0%
TCCATGTTTGACCGCGGTCG+AGG + tig0022240:81403-81422 None:intergenic 60.0%
ATACGAGCCATGGCGGTACC+AGG + tig0022240:81440-81459 None:intergenic 60.0%
GCGACCCCAAATACGAGCCA+TGG + tig0022240:81450-81469 None:intergenic 60.0%
! GCTCGTATTTGGGGTCGCAC+CGG - tig0022240:81452-81471 Msa1398110:CDS 60.0%
ACGGTGGGCGCCAATTGTTG+CGG + tig0022240:82208-82227 None:intergenic 60.0%
CAACAATTGGCGCCCACCGT+GGG - tig0022240:82208-82227 Msa1398110:intron 60.0%
AACAATTGGCGCCCACCGTG+GGG - tig0022240:82209-82228 Msa1398110:intron 60.0%
CTTTGACCTTTGCCCCACGG+TGG + tig0022240:82224-82243 None:intergenic 60.0%
CACCGTGGGGCAAAGGTCAA+AGG - tig0022240:82222-82241 Msa1398110:intron 60.0%
ACCGGTCACCATGACACGAG+CGG - tig0022240:82383-82402 Msa1398110:intron 60.0%
TCCGCTCGTGTCATGGTGAC+CGG + tig0022240:82387-82406 None:intergenic 60.0%
GGTCTTCTCCGCTCGTGTCA+TGG + tig0022240:82394-82413 None:intergenic 60.0%
ACGAGCGGAGAAGACCGAGA+TGG - tig0022240:82398-82417 Msa1398110:intron 60.0%
AGCGGAGAAGACCGAGATGG+TGG - tig0022240:82401-82420 Msa1398110:intron 60.0%
!! CCTGGCCTTGTCCACCATCT+CGG + tig0022240:82415-82434 None:intergenic 60.0%
TGAGGTGCGTCTTGGGGATG+CGG - tig0022240:82659-82678 Msa1398110:intron 60.0%
! ATGCGGGTGCTCTGATGGTG+TGG - tig0022240:82676-82695 Msa1398110:intron 60.0%
TCTACCAGGCATCACCCCCA+AGG + tig0022240:82734-82753 None:intergenic 60.0%
CAGACGATCACCGCTCTACC+AGG + tig0022240:82748-82767 None:intergenic 60.0%
CTGGTAGAGCGGTGATCGTC+TGG - tig0022240:82746-82765 Msa1398110:intron 60.0%
ACATCAACCTGGAGAGGCGG+TGG - tig0022240:82787-82806 Msa1398110:intron 60.0%
CCGGTTGAGGTGGAGGTTCA+AGG - tig0022240:82829-82848 Msa1398110:intron 60.0%
!! GAAGACGGAAGGCATTCCGG+AGG - tig0022240:82991-83010 Msa1398110:intron 60.0%
! GCGGAAGACATTCTGAGGGC+TGG - tig0022240:83186-83205 Msa1398110:intron 60.0%
GCTGCTCTCTCCCCCATACT+AGG - tig0022240:84128-84147 Msa1398110:intron 60.0%
ACGACCGCTGCCATCTGTTG+CGG + tig0022240:84326-84345 None:intergenic 60.0%
GTTTGGGCAGCTGCTAGCCC+AGG - tig0022240:81365-81384 Msa1398110:CDS 65.0%
GCCTCGACCGCGGTCAAACA+TGG - tig0022240:81399-81418 Msa1398110:CDS 65.0%
GCTGCTCTCTCCCCCAGACT+AGG - tig0022240:82010-82029 Msa1398110:intron 65.0%
GCAACAATTGGCGCCCACCG+TGG - tig0022240:82207-82226 Msa1398110:intron 65.0%
!! CCGAGATGGTGGACAAGGCC+AGG - tig0022240:82412-82431 Msa1398110:intron 65.0%
GAGGTGCGTCTTGGGGATGC+GGG - tig0022240:82660-82679 Msa1398110:intron 65.0%
TGGGGATGCGGGTGCTCTGA+TGG - tig0022240:82671-82690 Msa1398110:intron 65.0%
CTCACCTTGGGGGTGATGCC+TGG - tig0022240:82727-82746 Msa1398110:intron 65.0%
GGGGGTGATGCCTGGTAGAG+CGG - tig0022240:82735-82754 Msa1398110:intron 65.0%
TCTGAGGGCTGGAGGGGTTG+AGG - tig0022240:83197-83216 Msa1398110:intron 65.0%
GCAACAGATGGCAGCGGTCG+TGG - tig0022240:84325-84344 Msa1398110:intron 65.0%
GGTCGTGGCCGTTGCCAAAC+AGG - tig0022240:84340-84359 Msa1398110:intron 65.0%
TGGGCAGCTGCTAGCCCAGG+CGG - tig0022240:81368-81387 Msa1398110:CDS 70.0%
GCAGCTGCTAGCCCAGGCGG+TGG - tig0022240:81371-81390 Msa1398110:CDS 75.0%
TGGCGCCCACCGTGGGGCAA+AGG - tig0022240:82215-82234 Msa1398110:intron 75.0%
! CGAGGCGGCGACCACCGCCT+GGG + tig0022240:81385-81404 None:intergenic 80.0%
! TCGAGGCGGCGACCACCGCC+TGG + tig0022240:81386-81405 None:intergenic 80.0%
! GGTGGTCGCCGCCTCGACCG+CGG - tig0022240:81389-81408 Msa1398110:CDS 80.0%
Chromosome Type Strat End Strand Name
tig0022240 gene 81260 84831 81260 ID=Msa1398110;Name=Msa1398110
tig0022240 mRNA 81260 84831 81260 ID=Msa1398110-mRNA-1;Parent=Msa1398110;Name=Msa1398110-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|176
tig0022240 exon 84681 84831 84681 ID=Msa1398110-mRNA-1:exon:16447;Parent=Msa1398110-mRNA-1
tig0022240 exon 81260 81639 81260 ID=Msa1398110-mRNA-1:exon:16446;Parent=Msa1398110-mRNA-1
tig0022240 CDS 84681 84831 84681 ID=Msa1398110-mRNA-1:cds;Parent=Msa1398110-mRNA-1
tig0022240 CDS 81260 81639 81260 ID=Msa1398110-mRNA-1:cds;Parent=Msa1398110-mRNA-1
Gene Sequence

>Msa1398110

ATGACTTTCATATCAATCCTCACATTCACACTATGCTCCCTACTACTCACCCTCACTCCTTCACAAGCAGCCAACTTTGAGATCGTCAACAATTGCCCTTACACCGTTTGGGCAGCTGCTAGCCCAGGCGGTGGTCGCCGCCTCGACCGCGATTTCTACGACATCTCACTTGTCGATGGTTTCAACATCCCAATGGATTTCTTCCCTCTTAATGGTGGATGTCATAAAATCAGTTGCACTGCCGATATTAACGGACAGTGCCCTAAGGAATTGAGGACTCAAGGTGGTTGTAACAACCCTTGTACAGTTTTTAAGACCAATGAATATTGTTGCACTAATGGCCAAGGAAGCTGTGGACCCACTTATTTCTCAAGGTTTTTTAAGGATAGGTGTCATGATTCATACAGTTACCCTCAAGATGATCCAACAAGTACTTTCACTTGTCCTGCTGGATCTAACTACAAAGTTGTTTTCTGTCCTCTTGGAGCTCCTCATATTGAGATGCCACTAAACCAGACCAGTGTGTATTGA

Protein sequence

>Msa1398110

MTFISILTFTLCSLLLTLTPSQAANFEIVNNCPYTVWAAASPGGGRRLDRDFYDISLVDGFNIPMDFFPLNGGCHKISCTADINGQCPKELRTQGGCNNPCTVFKTNEYCCTNGQGSCGPTYFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGAPHIEMPLNQTSVY*