Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738400 | XP_003616589.2 | 98.494 | 332 | 5 | 0 | 1 | 332 | 1 | 332 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738400 | sp|Q9LY62|GMT1_ARATH | 67.372 | 331 | 100 | 4 | 3 | 332 | 11 | 334 | 2.35e-165 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738400 | G7KGW5 | 98.494 | 332 | 5 | 0 | 1 | 332 | 1 | 332 | 0.0 | 679 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032700 | Msa0738400 | -0.839860 | 1.230624e-57 | -8.615850e-47 |
| Msa0033970 | Msa0738400 | 0.846120 | 2.652258e-59 | -8.615850e-47 |
| Msa0038910 | Msa0738400 | -0.804689 | 1.915098e-49 | -8.615850e-47 |
| Msa0045530 | Msa0738400 | -0.830737 | 2.481904e-55 | -8.615850e-47 |
| Msa0047400 | Msa0738400 | -0.810750 | 9.867957e-51 | -8.615850e-47 |
| Msa0081920 | Msa0738400 | 0.836538 | 8.826958e-57 | -8.615850e-47 |
| Msa0093830 | Msa0738400 | -0.825621 | 4.242610e-54 | -8.615850e-47 |
| Msa0619590 | Msa0738400 | 0.826807 | 2.214994e-54 | -8.615850e-47 |
| Msa0654560 | Msa0738400 | -0.807231 | 5.591193e-50 | -8.615850e-47 |
| Msa0661490 | Msa0738400 | -0.807430 | 5.075169e-50 | -8.615850e-47 |
| Msa0680930 | Msa0738400 | -0.801943 | 7.093398e-49 | -8.615850e-47 |
| Msa0696600 | Msa0738400 | -0.817114 | 3.899743e-52 | -8.615850e-47 |
| Msa0703620 | Msa0738400 | -0.821051 | 4.958920e-53 | -8.615850e-47 |
| Msa0705710 | Msa0738400 | -0.803395 | 3.558253e-49 | -8.615850e-47 |
| Msa0708450 | Msa0738400 | -0.813535 | 2.436987e-51 | -8.615850e-47 |
| Msa0716430 | Msa0738400 | -0.811181 | 7.959309e-51 | -8.615850e-47 |
| Msa0738400 | Msa0749500 | 0.803086 | 4.122034e-49 | -8.615850e-47 |
| Msa0738400 | Msa0749510 | 0.801751 | 7.767751e-49 | -8.615850e-47 |
| Msa0738400 | Msa0784850 | 0.800843 | 1.191406e-48 | -8.615850e-47 |
| Msa0738400 | Msa0793910 | 0.805088 | 1.580548e-49 | -8.615850e-47 |
| Msa0738400 | Msa0796840 | -0.804802 | 1.813740e-49 | -8.615850e-47 |
| Msa0738400 | Msa0829970 | -0.820230 | 7.653619e-53 | -8.615850e-47 |
| Msa0738400 | Msa0858170 | 0.831360 | 1.744710e-55 | -8.615850e-47 |
| Msa0738400 | Msa0870120 | 0.804072 | 2.574068e-49 | -8.615850e-47 |
| Msa0738400 | Msa0934800 | -0.810855 | 9.367187e-51 | -8.615850e-47 |
| Msa0738400 | Msa0935830 | 0.830744 | 2.472000e-55 | -8.615850e-47 |
| Msa0738400 | Msa0967940 | -0.803719 | 3.047725e-49 | -8.615850e-47 |
| Msa0738400 | Msa0973000 | 0.828391 | 9.227354e-55 | -8.615850e-47 |
| Msa0738400 | Msa0974570 | -0.800073 | 1.710381e-48 | -8.615850e-47 |
| Msa0738400 | Msa0979050 | 0.816852 | 4.465511e-52 | -8.615850e-47 |
| Msa0738400 | Msa1031650 | -0.813518 | 2.458527e-51 | -8.615850e-47 |
| Msa0738400 | Msa1056590 | -0.808791 | 2.602991e-50 | -8.615850e-47 |
| Msa0738400 | Msa1082760 | -0.812466 | 4.180740e-51 | -8.615850e-47 |
| Msa0738400 | Msa1092430 | -0.803644 | 3.159249e-49 | -8.615850e-47 |
| Msa0738400 | Msa1118870 | -0.808529 | 2.961845e-50 | -8.615850e-47 |
| Msa0738400 | Msa1315990 | -0.811045 | 8.519255e-51 | -8.615850e-47 |
| Msa0738400 | Msa1316090 | -0.800780 | 1.227195e-48 | -8.615850e-47 |
| Msa0738400 | Msa1339520 | -0.804306 | 2.301142e-49 | -8.615850e-47 |
| Msa0738400 | Msa1356680 | -0.800225 | 1.592824e-48 | -8.615850e-47 |
| Msa0738400 | Msa1371690 | -0.829035 | 6.445902e-55 | -8.615850e-47 |
| Msa0738400 | Msa1372470 | -0.819542 | 1.099381e-52 | -8.615850e-47 |
| Msa0738400 | Msa1376230 | -0.839844 | 1.242215e-57 | -8.615850e-47 |
| Msa0738400 | Msa1407610 | -0.819233 | 1.293468e-52 | -8.615850e-47 |
| Msa0738400 | Msa1412810 | -0.817823 | 2.699669e-52 | -8.615850e-47 |
| Msa0738400 | Msa1434850 | -0.807881 | 4.069690e-50 | -8.615850e-47 |
| Msa0738400 | Msa1438380 | -0.807136 | 5.856515e-50 | -8.615850e-47 |
| Msa0128030 | Msa0738400 | 0.850845 | 1.304674e-60 | -8.615850e-47 |
| Msa0140330 | Msa0738400 | -0.829316 | 5.511384e-55 | -8.615850e-47 |
| Msa0181690 | Msa0738400 | -0.807767 | 4.304539e-50 | -8.615850e-47 |
| Msa0217300 | Msa0738400 | -0.817998 | 2.464725e-52 | -8.615850e-47 |
| Msa0235180 | Msa0738400 | -0.833325 | 5.691310e-56 | -8.615850e-47 |
| Msa0368430 | Msa0738400 | -0.805030 | 1.624736e-49 | -8.615850e-47 |
| Msa0371640 | Msa0738400 | -0.820786 | 5.704926e-53 | -8.615850e-47 |
| Msa0383110 | Msa0738400 | -0.804259 | 2.353867e-49 | -8.615850e-47 |
| Msa0409000 | Msa0738400 | -0.810066 | 1.386589e-50 | -8.615850e-47 |
| Msa0416040 | Msa0738400 | 0.810297 | 1.236423e-50 | -8.615850e-47 |
| Msa0420100 | Msa0738400 | -0.809535 | 1.803251e-50 | -8.615850e-47 |
| Msa0428740 | Msa0738400 | -0.815862 | 7.436209e-52 | -8.615850e-47 |
| Msa0455830 | Msa0738400 | 0.804240 | 2.375253e-49 | -8.615850e-47 |
| Msa0258410 | Msa0738400 | -0.806683 | 7.301072e-50 | -8.615850e-47 |
| Msa0265440 | Msa0738400 | -0.816272 | 6.023893e-52 | -8.615850e-47 |
| Msa0266100 | Msa0738400 | -0.808680 | 2.749584e-50 | -8.615850e-47 |
| Msa0274890 | Msa0738400 | -0.801270 | 9.748466e-49 | -8.615850e-47 |
| Msa0288300 | Msa0738400 | -0.810068 | 1.384909e-50 | -8.615850e-47 |
| Msa0288360 | Msa0738400 | -0.818024 | 2.431906e-52 | -8.615850e-47 |
| Msa0304020 | Msa0738400 | -0.829288 | 5.598748e-55 | -8.615850e-47 |
| Msa0310260 | Msa0738400 | -0.810935 | 8.998273e-51 | -8.615850e-47 |
| Msa0313800 | Msa0738400 | -0.810840 | 9.438004e-51 | -8.615850e-47 |
| Msa0323790 | Msa0738400 | -0.813196 | 2.892908e-51 | -8.615850e-47 |
| Msa0341710 | Msa0738400 | -0.821969 | 3.043940e-53 | -8.615850e-47 |
| Msa0352120 | Msa0738400 | -0.810881 | 9.244204e-51 | -8.615850e-47 |
| Msa0485350 | Msa0738400 | -0.813408 | 2.598962e-51 | -8.615850e-47 |
| Msa0506740 | Msa0738400 | -0.806349 | 8.588719e-50 | -8.615850e-47 |
| Msa0511930 | Msa0738400 | -0.822195 | 2.697991e-53 | -8.615850e-47 |
| Msa0516330 | Msa0738400 | -0.812889 | 3.378246e-51 | -8.615850e-47 |
| Msa0524570 | Msa0738400 | -0.809593 | 1.752768e-50 | -8.615850e-47 |
| Msa0557770 | Msa0738400 | -0.806603 | 7.592847e-50 | -8.615850e-47 |
| Msa0574830 | Msa0738400 | -0.801333 | 9.459870e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738400 | MtrunA17_Chr5g0436731 | 98.494 | 332 | 5 | 0 | 1 | 332 | 1 | 332 | 0.0 | 679 |
| Msa0738400 | MtrunA17_Chr1g0197731 | 33.193 | 238 | 131 | 6 | 85 | 314 | 538 | 755 | 1.14e-28 | 116 |
| Msa0738400 | MtrunA17_Chr1g0147601 | 30.556 | 288 | 165 | 10 | 56 | 326 | 62 | 331 | 7.45e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738400 | AT3G55830.1 | 67.372 | 331 | 100 | 4 | 3 | 332 | 11 | 334 | 2.39e-166 | 466 |
| Msa0738400 | AT5G04500.1 | 30.000 | 240 | 136 | 6 | 85 | 314 | 532 | 749 | 1.11e-28 | 117 |
| Msa0738400 | AT1G80290.1 | 31.022 | 274 | 157 | 9 | 73 | 326 | 49 | 310 | 1.13e-21 | 94.4 |
| Msa0738400 | AT1G80290.2 | 31.022 | 274 | 157 | 9 | 73 | 326 | 57 | 318 | 1.39e-21 | 94.0 |
Find 108 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGTTCAAGTTTCTTATTA+TGG | 0.206659 | 5_1:-56147374 | Msa0738400:CDS |
| GGTTCGGAGTTGAGAGATTT+TGG | 0.210920 | 5_1:+56147825 | None:intergenic |
| TAATAGATTTAAAGAAATTA+AGG | 0.224224 | 5_1:-56145735 | Msa0738400:CDS |
| ATTTAAAGAAATTAAGGATT+TGG | 0.259132 | 5_1:-56145729 | Msa0738400:CDS |
| TTACTGAACCGAACCGGTTT+TGG | 0.263015 | 5_1:-56147573 | Msa0738400:five_prime_UTR |
| TGGTTCAAGTTTCTTATTAT+GGG | 0.278026 | 5_1:-56147373 | Msa0738400:CDS |
| TTTATTGCCGTTTGATTGAT+TGG | 0.294893 | 5_1:+56147745 | None:intergenic |
| CCTAAGGAATTTGCTAAATC+AGG | 0.302144 | 5_1:+56143258 | None:intergenic |
| GAACCTTGAATCAGTGAAAC+TGG | 0.317353 | 5_1:+56147323 | None:intergenic |
| ATCAACTGGAATTAGTAGTT+TGG | 0.324045 | 5_1:-56143575 | Msa0738400:CDS |
| CTTGATCTTGGCTGATTTAA+CGG | 0.328719 | 5_1:+56147446 | None:intergenic |
| TAATATTGAATTGTAATCTA+AGG | 0.330191 | 5_1:-56143224 | Msa0738400:three_prime_UTR |
| TGGAATTCGCATTTGATGTT+TGG | 0.335175 | 5_1:-56145652 | Msa0738400:CDS |
| ATATCGTCCGTCTCTAGATT+TGG | 0.345844 | 5_1:+56145799 | None:intergenic |
| CGTGTCTTGGATCATGAAAA+TGG | 0.357281 | 5_1:+56147652 | None:intergenic |
| AACCTATTTACTTCTGTGTA+TGG | 0.359210 | 5_1:-56143520 | Msa0738400:CDS |
| ATATATGAGATTGGATCAAC+TGG | 0.362340 | 5_1:-56143589 | Msa0738400:CDS |
| AATTACCTTTAACCCATAAC+GGG | 0.378032 | 5_1:+56144555 | None:intergenic |
| TAGTAATGTGTTTGGAATGA+AGG | 0.379858 | 5_1:+56147897 | None:intergenic |
| TCAACTGGAATTAGTAGTTT+GGG | 0.396190 | 5_1:-56143574 | Msa0738400:CDS |
| CTAAGGCAGCATCCTCTGTT+AGG | 0.396730 | 5_1:-56143207 | Msa0738400:three_prime_UTR |
| GAGAATTTGTAACTAAGAAC+AGG | 0.400975 | 5_1:-56144748 | Msa0738400:intron |
| GCCCATACACAGAAGTAAAT+AGG | 0.401306 | 5_1:+56143518 | None:intergenic |
| AGACTTTCTGATGGAGGATT+GGG | 0.401771 | 5_1:+56145851 | None:intergenic |
| TTTCTTGTCGCAAATGCAAC+TGG | 0.403236 | 5_1:-56144584 | Msa0738400:CDS |
| TGGTGGTCTGTGTGGTGGAC+GGG | 0.410126 | 5_1:-56144857 | Msa0738400:CDS |
| AAGACTTTCTGATGGAGGAT+TGG | 0.418259 | 5_1:+56145850 | None:intergenic |
| ATTTGATTGTAGAATATTGA+AGG | 0.420517 | 5_1:-56143159 | Msa0738400:three_prime_UTR |
| GTCGGATTGAACAGAGGTTT+CGG | 0.421732 | 5_1:-56147485 | Msa0738400:CDS |
| CCTGATTTAGCAAATTCCTT+AGG | 0.422121 | 5_1:-56143258 | Msa0738400:three_prime_UTR |
| AAATTACCTTTAACCCATAA+CGG | 0.425637 | 5_1:+56144554 | None:intergenic |
| TGCGAATTCCACCGAAGAGC+AGG | 0.435917 | 5_1:+56145664 | None:intergenic |
| TTCTGATCCAATCAATCAAA+CGG | 0.436471 | 5_1:-56147752 | Msa0738400:five_prime_UTR |
| GAAGCTCCGGTTCGAAATGA+AGG | 0.448999 | 5_1:-56147609 | Msa0738400:five_prime_UTR |
| AAATAACAGAAGCTTGATCT+TGG | 0.452251 | 5_1:+56147434 | None:intergenic |
| ATAGTCGCAATGTCTGGTTT+TGG | 0.454922 | 5_1:-56143459 | Msa0738400:CDS |
| TGTCCATTGGTTAGATTCGT+TGG | 0.458659 | 5_1:-56145591 | Msa0738400:intron |
| ACAGGTAAAATATATGAGAT+TGG | 0.461138 | 5_1:-56143598 | Msa0738400:intron |
| GACAACAACAAATTTAGATA+TGG | 0.462661 | 5_1:-56144884 | Msa0738400:CDS |
| ATGGTGGTCTGTGTGGTGGA+CGG | 0.464395 | 5_1:-56144858 | Msa0738400:CDS |
| TGTCATATTTCCCTGCTCTT+CGG | 0.466320 | 5_1:-56145675 | Msa0738400:CDS |
| TTTCACTGACGTATATACTA+AGG | 0.468030 | 5_1:+56143489 | None:intergenic |
| CCGTTGATAGTCGCAATGTC+TGG | 0.468930 | 5_1:-56143465 | Msa0738400:CDS |
| TTCCCAGTTTCACTGATTCA+AGG | 0.472796 | 5_1:-56147326 | Msa0738400:intron |
| ACAAATTCTCTAATTGATGA+TGG | 0.477812 | 5_1:+56144761 | None:intergenic |
| GTTGATGCACGCAATATGAA+TGG | 0.489426 | 5_1:+56147847 | None:intergenic |
| TTTGTGAAAGAATGCTGCCT+TGG | 0.491658 | 5_1:+56144814 | None:intergenic |
| AGAAAACCTTCATTTCGAAC+CGG | 0.493120 | 5_1:+56147603 | None:intergenic |
| ACCTATTTACTTCTGTGTAT+GGG | 0.504941 | 5_1:-56143519 | Msa0738400:CDS |
| ACAAATCCCACCATTGCATC+CGG | 0.508793 | 5_1:+56145620 | None:intergenic |
| TCAGTGAAACTGGGAATTTG+AGG | 0.510055 | 5_1:+56147333 | None:intergenic |
| GGTTCGTTACTGAACCGAAC+CGG | 0.512638 | 5_1:-56147579 | Msa0738400:five_prime_UTR |
| CTTAAACTAATCAGAAGCTC+CGG | 0.521536 | 5_1:-56147622 | Msa0738400:five_prime_UTR |
| CATATTTCCCTGCTCTTCGG+TGG | 0.522551 | 5_1:-56145672 | Msa0738400:CDS |
| AATGAAGAAACAGAGGAAGA+TGG | 0.522661 | 5_1:+56147775 | None:intergenic |
| GATTTGTACCTCGTGTCCAT+TGG | 0.522707 | 5_1:-56145604 | Msa0738400:CDS |
| TGATGTTTGGCAAAGTGCAC+CGG | 0.530100 | 5_1:-56145639 | Msa0738400:CDS |
| GGAGCTGTTGGTTGAACCGT+CGG | 0.530590 | 5_1:-56147503 | Msa0738400:CDS |
| TGGTTAAGGAGACATGAATC+AGG | 0.532444 | 5_1:+56147700 | None:intergenic |
| CAGTGAAACTGGGAATTTGA+GGG | 0.535082 | 5_1:+56147334 | None:intergenic |
| TTGGATCATGAAAATGGAAG+AGG | 0.538581 | 5_1:+56147658 | None:intergenic |
| AACAACAAATTTAGATATGG+TGG | 0.541211 | 5_1:-56144881 | Msa0738400:CDS |
| AAGTGCACCGGATGCAATGG+TGG | 0.544682 | 5_1:-56145627 | Msa0738400:CDS |
| CTAAGGAATTTGCTAAATCA+GGG | 0.554337 | 5_1:+56143259 | None:intergenic |
| TTTAGAAGACTTTCTGATGG+AGG | 0.564085 | 5_1:+56145845 | None:intergenic |
| CCAGACATTGCGACTATCAA+CGG | 0.564873 | 5_1:+56143465 | None:intergenic |
| ATGGTGGATGGTGGTCTGTG+TGG | 0.564923 | 5_1:-56144865 | Msa0738400:CDS |
| GTGGATGGTGGTCTGTGTGG+TGG | 0.565684 | 5_1:-56144862 | Msa0738400:CDS |
| ACGGACGATATGTGAAGTTG+AGG | 0.586320 | 5_1:-56145787 | Msa0738400:CDS |
| TATTAGCGGCGGTGATGAGA+GGG | 0.587978 | 5_1:-56147524 | Msa0738400:exon |
| TGTGTTTGGAATGAAGGAGA+GGG | 0.589097 | 5_1:+56147903 | None:intergenic |
| CGGTGATGAGAGGGAGCTGT+TGG | 0.589133 | 5_1:-56147515 | Msa0738400:exon |
| TTATTAGCGGCGGTGATGAG+AGG | 0.597155 | 5_1:-56147525 | Msa0738400:exon |
| TTCACTGACGTATATACTAA+GGG | 0.597837 | 5_1:+56143490 | None:intergenic |
| AGGAGACATGAATCAGGTGA+TGG | 0.598172 | 5_1:+56147706 | None:intergenic |
| ACAAATTTAGATATGGTGGA+TGG | 0.602492 | 5_1:-56144877 | Msa0738400:CDS |
| TATTACAAGAAATCAACCTA+AGG | 0.609014 | 5_1:+56143242 | None:intergenic |
| ATACCAACGAATCTAACCAA+TGG | 0.611009 | 5_1:+56145588 | None:intergenic |
| ATATAGCATGGTGCTCTCCA+AGG | 0.616926 | 5_1:-56144831 | Msa0738400:CDS |
| GCGAATTCCACCGAAGAGCA+GGG | 0.618715 | 5_1:+56145665 | None:intergenic |
| ATGTGTTTGGAATGAAGGAG+AGG | 0.620429 | 5_1:+56147902 | None:intergenic |
| ATCAGAAAATGAAGAAACAG+AGG | 0.621868 | 5_1:+56147768 | None:intergenic |
| GTTTGGGAGGTCATAGTGAA+CGG | 0.624381 | 5_1:-56143558 | Msa0738400:CDS |
| TTTGGAATGAAGGAGAGGGA+AGG | 0.626473 | 5_1:+56147907 | None:intergenic |
| TATTTACTTCTGTGTATGGG+CGG | 0.627886 | 5_1:-56143516 | Msa0738400:CDS |
| TTGAGTCAGTACATATTGTG+TGG | 0.629828 | 5_1:-56145880 | Msa0738400:CDS |
| AACCTTGAATCAGTGAAACT+GGG | 0.631242 | 5_1:+56147324 | None:intergenic |
| ACTGGAATTAGTAGTTTGGG+AGG | 0.632754 | 5_1:-56143571 | Msa0738400:CDS |
| GCAAAGTGCACCGGATGCAA+TGG | 0.638093 | 5_1:-56145630 | Msa0738400:CDS |
| ATTACCTTTAACCCATAACG+GGG | 0.639745 | 5_1:+56144556 | None:intergenic |
| AGTGCACCGGATGCAATGGT+GGG | 0.640002 | 5_1:-56145626 | Msa0738400:CDS |
| TAAACAATAATTGACAACAG+TGG | 0.650312 | 5_1:+56143396 | None:intergenic |
| AATTTAGATATGGTGGATGG+TGG | 0.653603 | 5_1:-56144874 | Msa0738400:CDS |
| ATAAATGACTAACGTGAACG+TGG | 0.664051 | 5_1:+56143325 | None:intergenic |
| GATCTTGGCTGATTTAACGG+TGG | 0.667058 | 5_1:+56147449 | None:intergenic |
| GGTGATGGATGACACGTGGA+TGG | 0.668912 | 5_1:+56147721 | None:intergenic |
| TGAACCGTCGGATTGAACAG+AGG | 0.670462 | 5_1:-56147491 | Msa0738400:CDS |
| ATATGTACTGACTCAAGTCG+AGG | 0.675049 | 5_1:+56145887 | None:intergenic |
| AGTGAAACTGGGAATTTGAG+GGG | 0.676257 | 5_1:+56147335 | None:intergenic |
| GTAAAGTCCAAATCTAGAGA+CGG | 0.683801 | 5_1:-56145806 | Msa0738400:CDS |
| GAAACCTCTGTTCAATCCGA+CGG | 0.684402 | 5_1:+56147487 | None:intergenic |
| ATCAGGTGATGGATGACACG+TGG | 0.707701 | 5_1:+56147717 | None:intergenic |
| GAATCTAACCAATGGACACG+AGG | 0.709906 | 5_1:+56145596 | None:intergenic |
| ATTCTATTGTAATGAACACG+TGG | 0.719028 | 5_1:-56145958 | Msa0738400:CDS |
| GTTGAGGTTTGATATCAACA+CGG | 0.722201 | 5_1:-56145771 | Msa0738400:CDS |
| TTACCTTTAACCCATAACGG+GGG | 0.745725 | 5_1:+56144557 | None:intergenic |
| GTGGACGGGTACATATAGCA+TGG | 0.778264 | 5_1:-56144843 | Msa0738400:CDS |
| TAGATTTGGACTTTACAACG+TGG | 0.788272 | 5_1:+56145813 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAATACAAAATTTATTTT+TGG | - | chr5_1:56143870-56143889 | Msa0738400:intron | 10.0% |
| !!! | TTTTGATTTTGTATATAATA+AGG | - | chr5_1:56144060-56144079 | Msa0738400:intron | 10.0% |
| !! | TTATGTTTAGTATTTAAATT+TGG | - | chr5_1:56144150-56144169 | Msa0738400:intron | 10.0% |
| !! | TAATAGATTTAAAGAAATTA+AGG | - | chr5_1:56145321-56145340 | Msa0738400:intron | 10.0% |
| !! | TTAAAAAAAAAAAACTTGTA+AGG | - | chr5_1:56146111-56146130 | Msa0738400:intron | 10.0% |
| !! | AAATAAATAAAAAATTAGCA+GGG | + | chr5_1:56146355-56146374 | None:intergenic | 10.0% |
| !! | TAAATAAATAAAAAATTAGC+AGG | + | chr5_1:56146356-56146375 | None:intergenic | 10.0% |
| !! | ATATGTTTATCTTATAATTA+AGG | - | chr5_1:56147025-56147044 | Msa0738400:intron | 10.0% |
| !!! | AATTTTTATAGTAATGTGTT+TGG | + | chr5_1:56143170-56143189 | None:intergenic | 15.0% |
| !! | TAAATAAAAAAAACCAAAAC+CGG | + | chr5_1:56143499-56143518 | None:intergenic | 15.0% |
| !!! | AATACAAAATTTATTTTTGG+TGG | - | chr5_1:56143873-56143892 | Msa0738400:intron | 15.0% |
| !!! | ATACAAAATTTATTTTTGGT+GGG | - | chr5_1:56143874-56143893 | Msa0738400:intron | 15.0% |
| !! | ATAGGAAATATAAATAGAAA+GGG | - | chr5_1:56144036-56144055 | Msa0738400:intron | 15.0% |
| !!! | TTTAATTTGAAGAGTAAAAT+AGG | - | chr5_1:56144117-56144136 | Msa0738400:intron | 15.0% |
| !!! | TTAATTTGAAGAGTAAAATA+GGG | - | chr5_1:56144118-56144137 | Msa0738400:intron | 15.0% |
| !! | GAAGTGAATTTATATATATT+TGG | - | chr5_1:56144668-56144687 | Msa0738400:intron | 15.0% |
| !! | AGTAAAAAAAATTAGATGTT+TGG | + | chr5_1:56144820-56144839 | None:intergenic | 15.0% |
| !! | ATTTAAAGAAATTAAGGATT+TGG | - | chr5_1:56145327-56145346 | Msa0738400:intron | 15.0% |
| !! | AATAAATAAAAAATTAGCAG+GGG | + | chr5_1:56146354-56146373 | None:intergenic | 15.0% |
| !! | TTATTGATCAAATAACAAAA+TGG | + | chr5_1:56146410-56146429 | None:intergenic | 15.0% |
| !! | AATAATTTAAATGATTTACC+AGG | - | chr5_1:56146425-56146444 | Msa0738400:intron | 15.0% |
| !! | TAATATTGAATTGTAATCTA+AGG | - | chr5_1:56147832-56147851 | Msa0738400:five_prime_UTR | 15.0% |
| !!! | AGTTTTGTAGTTTCTATTTT+AGG | - | chr5_1:56143828-56143847 | Msa0738400:intron | 20.0% |
| !!! | GTTTTGTAGTTTCTATTTTA+GGG | - | chr5_1:56143829-56143848 | Msa0738400:intron | 20.0% |
| !!! | AAGTTTCGGTTTTTTTTTTA+TGG | - | chr5_1:56143940-56143959 | Msa0738400:intron | 20.0% |
| !! | GAATTTCTATATATGTGTTT+GGG | - | chr5_1:56143962-56143981 | Msa0738400:intron | 20.0% |
| !!! | TTTTTTTGTTTGTTTTGCAT+AGG | - | chr5_1:56144018-56144037 | Msa0738400:intron | 20.0% |
| !! | CATAGGAAATATAAATAGAA+AGG | - | chr5_1:56144035-56144054 | Msa0738400:intron | 20.0% |
| !!! | TTTGGAATGAATATATAACA+AGG | - | chr5_1:56144168-56144187 | Msa0738400:intron | 20.0% |
| !!! | GTCATTTTCTCAAATATTAT+TGG | - | chr5_1:56144348-56144367 | Msa0738400:intron | 20.0% |
| !!! | TTTTGTTCAAATTTGTATAC+TGG | - | chr5_1:56144454-56144473 | Msa0738400:intron | 20.0% |
| !! | CAAAAAAAAATTAAAAGTCC+AGG | + | chr5_1:56144495-56144514 | None:intergenic | 20.0% |
| !!! | CTGGACTTTTAATTTTTTTT+TGG | - | chr5_1:56144493-56144512 | Msa0738400:intron | 20.0% |
| !! | TGATTATGTATGATTTGATT+TGG | - | chr5_1:56144631-56144650 | Msa0738400:intron | 20.0% |
| !!! | CTAAAATTTTACATTGAACT+TGG | + | chr5_1:56144711-56144730 | None:intergenic | 20.0% |
| !! | TAACAATAAGAGATAAAAAG+TGG | + | chr5_1:56144756-56144775 | None:intergenic | 20.0% |
| !! | TTAAAAGGTAAATACTATTG+GGG | + | chr5_1:56145722-56145741 | None:intergenic | 20.0% |
| !! | CTTAAAAGGTAAATACTATT+GGG | + | chr5_1:56145723-56145742 | None:intergenic | 20.0% |
| !! | TCTTAAAAGGTAAATACTAT+TGG | + | chr5_1:56145724-56145743 | None:intergenic | 20.0% |
| !!! | TTTCATGCTTAATTTTGAAA+TGG | + | chr5_1:56145802-56145821 | None:intergenic | 20.0% |
| !! | CGTTCAATAATTAAAAGATA+CGG | + | chr5_1:56146535-56146554 | None:intergenic | 20.0% |
| !!! | CGTATCTTTTAATTATTGAA+CGG | - | chr5_1:56146533-56146552 | Msa0738400:intron | 20.0% |
| !!! | GTATCTTTTAATTATTGAAC+GGG | - | chr5_1:56146534-56146553 | Msa0738400:intron | 20.0% |
| !!! | ACATTTGTAAGATTGATTTA+TGG | - | chr5_1:56146664-56146683 | Msa0738400:intron | 20.0% |
| !! | TAATTAAGGAAGTTAAAGTA+TGG | - | chr5_1:56147039-56147058 | Msa0738400:intron | 20.0% |
| !! | GGTTTCAAAAATAAATTTCA+TGG | + | chr5_1:56147171-56147190 | None:intergenic | 20.0% |
| !! | TATATATGATGTTTACATTG+TGG | - | chr5_1:56147421-56147440 | Msa0738400:CDS | 20.0% |
| !!! | ATATATTTTACCTGTAACAA+AGG | + | chr5_1:56147453-56147472 | None:intergenic | 20.0% |
| !! | ATTTGATTGTAGAATATTGA+AGG | - | chr5_1:56147897-56147916 | Msa0738400:five_prime_UTR | 20.0% |
| !!! | TTTAAGATTTTAACGTGTCT+TGG | + | chr5_1:56143420-56143439 | None:intergenic | 25.0% |
| !!! | AGAGATTTTGTTGTTATTAG+CGG | - | chr5_1:56143518-56143537 | Msa0738400:CDS | 25.0% |
| !! | TGGTTCAAGTTTCTTATTAT+GGG | - | chr5_1:56143683-56143702 | Msa0738400:intron | 25.0% |
| !!! | TGGAAATGTTTTTTTGTTGT+TGG | - | chr5_1:56143908-56143927 | Msa0738400:intron | 25.0% |
| ! | GTTGGAAAAATACAAAGTTT+CGG | - | chr5_1:56143926-56143945 | Msa0738400:intron | 25.0% |
| ! | GGAATTTCTATATATGTGTT+TGG | - | chr5_1:56143961-56143980 | Msa0738400:intron | 25.0% |
| ! | TGTAATTATATGTGTCATGT+TGG | + | chr5_1:56144319-56144338 | None:intergenic | 25.0% |
| ! | ATATCTATGAAGCATAGATA+CGG | + | chr5_1:56144403-56144422 | None:intergenic | 25.0% |
| !! | TGGATAATTTAGTGTGTTTT+TGG | - | chr5_1:56144576-56144595 | Msa0738400:CDS | 25.0% |
| ! | GTTTAAATTCATGATTGAGA+GGG | + | chr5_1:56144877-56144896 | None:intergenic | 25.0% |
| ! | TGTTTAAATTCATGATTGAG+AGG | + | chr5_1:56144878-56144897 | None:intergenic | 25.0% |
| ! | TCTCAATCATGAATTTAAAC+AGG | - | chr5_1:56144877-56144896 | Msa0738400:CDS | 25.0% |
| !! | ATAAACAACAATTAGTTCTC+TGG | + | chr5_1:56145057-56145076 | None:intergenic | 25.0% |
| !!! | TATTTTAGAAGACTTTCTGA+TGG | + | chr5_1:56145217-56145236 | None:intergenic | 25.0% |
| ! | TCAAGGATAATTGAAAATCA+TGG | + | chr5_1:56145523-56145542 | None:intergenic | 25.0% |
| ! | AATGTGTAGTCAAAATATCA+AGG | + | chr5_1:56145540-56145559 | None:intergenic | 25.0% |
| ! | TGTGAATAACTAATTAAGCT+TGG | - | chr5_1:56145605-56145624 | Msa0738400:CDS | 25.0% |
| ! | TTGCAAAACTACATCTTAAA+AGG | + | chr5_1:56145737-56145756 | None:intergenic | 25.0% |
| !!! | TGTTGTTTTATGGCAATATA+AGG | + | chr5_1:56145825-56145844 | None:intergenic | 25.0% |
| !!! | GTGCTATTTTTGTTGTTTTA+TGG | + | chr5_1:56145835-56145854 | None:intergenic | 25.0% |
| ! | GACAACAACAAATTTAGATA+TGG | - | chr5_1:56146172-56146191 | Msa0738400:intron | 25.0% |
| ! | AACAACAAATTTAGATATGG+TGG | - | chr5_1:56146175-56146194 | Msa0738400:intron | 25.0% |
| ! | ACAAATTCTCTAATTGATGA+TGG | + | chr5_1:56146298-56146317 | None:intergenic | 25.0% |
| ! | TGATCAAATAACAAAATGGT+TGG | + | chr5_1:56146406-56146425 | None:intergenic | 25.0% |
| ! | AAATTACCTTTAACCCATAA+CGG | + | chr5_1:56146505-56146524 | None:intergenic | 25.0% |
| ! | ACTAATCATGTATCATTCAT+TGG | + | chr5_1:56146697-56146716 | None:intergenic | 25.0% |
| ! | TGAATGATACATGATTAGTA+TGG | - | chr5_1:56146698-56146717 | Msa0738400:intron | 25.0% |
| ! | CAATGAAGAATATGAAAATG+TGG | + | chr5_1:56146746-56146765 | None:intergenic | 25.0% |
| !! | CACATTTTCATATTCTTCAT+TGG | - | chr5_1:56146744-56146763 | Msa0738400:intron | 25.0% |
| ! | AAAGTTATAGCAATAGCAAA+AGG | - | chr5_1:56146866-56146885 | Msa0738400:intron | 25.0% |
| !! | TATCGTGATTTCATTTGTTT+TGG | - | chr5_1:56147129-56147148 | Msa0738400:intron | 25.0% |
| !!! | TTGATTTGTATTACCATGAT+GGG | + | chr5_1:56147312-56147331 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTATTACCATGA+TGG | + | chr5_1:56147313-56147332 | None:intergenic | 25.0% |
| ! | ACAGGTAAAATATATGAGAT+TGG | - | chr5_1:56147458-56147477 | Msa0738400:CDS | 25.0% |
| ! | TAAACAATAATTGACAACAG+TGG | + | chr5_1:56147663-56147682 | None:intergenic | 25.0% |
| !!! | TATACACAATTCTTGCTTTT+TGG | - | chr5_1:56147774-56147793 | Msa0738400:five_prime_UTR | 25.0% |
| ! | TATTACAAGAAATCAACCTA+AGG | + | chr5_1:56147817-56147836 | None:intergenic | 25.0% |
| ! | TAGTAATGTGTTTGGAATGA+AGG | + | chr5_1:56143162-56143181 | None:intergenic | 30.0% |
| ATCAGAAAATGAAGAAACAG+AGG | + | chr5_1:56143291-56143310 | None:intergenic | 30.0% | |
| TTCTGATCCAATCAATCAAA+CGG | - | chr5_1:56143304-56143323 | Msa0738400:three_prime_UTR | 30.0% | |
| ! | TTTATTGCCGTTTGATTGAT+TGG | + | chr5_1:56143314-56143333 | None:intergenic | 30.0% |
| !!! | TTTGTTTTCGTTGATGGTTA+AGG | + | chr5_1:56143373-56143392 | None:intergenic | 30.0% |
| AAAAAAAACCAAAACCGGTT+CGG | + | chr5_1:56143494-56143513 | None:intergenic | 30.0% | |
| AAATAACAGAAGCTTGATCT+TGG | + | chr5_1:56143625-56143644 | None:intergenic | 30.0% | |
| ! | CTGGTTCAAGTTTCTTATTA+TGG | - | chr5_1:56143682-56143701 | Msa0738400:intron | 30.0% |
| ! | TTTGGTGGGAAATTCTTTTA+TGG | - | chr5_1:56143888-56143907 | Msa0738400:intron | 30.0% |
| !! | GTTTTATTGCCTTGATTTGA+AGG | - | chr5_1:56144082-56144101 | Msa0738400:intron | 30.0% |
| TGAAGAGTAAAATAGGGAAA+TGG | - | chr5_1:56144124-56144143 | Msa0738400:intron | 30.0% | |
| ! | TATAGATTGTAACGAGCTTT+TGG | - | chr5_1:56144205-56144224 | Msa0738400:intron | 30.0% |
| TATGAAGCATATATACTCCT+CGG | - | chr5_1:56144252-56144271 | Msa0738400:intron | 30.0% | |
| AGTGATCATTTGATCAACTA+CGG | - | chr5_1:56144527-56144546 | Msa0738400:intron | 30.0% | |
| TTACATTGAACTTGGTTTCA+GGG | + | chr5_1:56144703-56144722 | None:intergenic | 30.0% | |
| TTTACATTGAACTTGGTTTC+AGG | + | chr5_1:56144704-56144723 | None:intergenic | 30.0% | |
| AGAGATAAAAAGTGGATCTT+GGG | + | chr5_1:56144748-56144767 | None:intergenic | 30.0% | |
| AAGAGATAAAAAGTGGATCT+TGG | + | chr5_1:56144749-56144768 | None:intergenic | 30.0% | |
| !!! | TTTTATTTTCATGAGTGCTG+AGG | - | chr5_1:56145014-56145033 | Msa0738400:intron | 30.0% |
| GTTGTTTATTCTTTGTTCAC+AGG | - | chr5_1:56145068-56145087 | Msa0738400:intron | 30.0% | |
| TTATTCTTTGTTCACAGGAA+AGG | - | chr5_1:56145073-56145092 | Msa0738400:intron | 30.0% | |
| ATTCTATTGTAATGAACACG+TGG | - | chr5_1:56145098-56145117 | Msa0738400:intron | 30.0% | |
| GTAAATACTATTGGGGATTA+TGG | + | chr5_1:56145715-56145734 | None:intergenic | 30.0% | |
| GCATACTATTGTGAAACATA+TGG | - | chr5_1:56145767-56145786 | Msa0738400:CDS | 30.0% | |
| TGCAAGAACATTGAATAACT+TGG | + | chr5_1:56146145-56146164 | None:intergenic | 30.0% | |
| TATTCAATGTTCTTGCAGAA+TGG | - | chr5_1:56146148-56146167 | Msa0738400:intron | 30.0% | |
| ! | ACAAATTTAGATATGGTGGA+TGG | - | chr5_1:56146179-56146198 | Msa0738400:intron | 30.0% |
| GAGAATTTGTAACTAAGAAC+AGG | - | chr5_1:56146308-56146327 | Msa0738400:intron | 30.0% | |
| AATTACCTTTAACCCATAAC+GGG | + | chr5_1:56146504-56146523 | None:intergenic | 30.0% | |
| CAATCTTACAAATGTCAGAA+AGG | + | chr5_1:56146659-56146678 | None:intergenic | 30.0% | |
| AATAAAGGAACAAGAAGTCA+AGG | + | chr5_1:56146918-56146937 | None:intergenic | 30.0% | |
| ACTAATTGCTTCAATGTACA+GGG | + | chr5_1:56146944-56146963 | None:intergenic | 30.0% | |
| TACTAATTGCTTCAATGTAC+AGG | + | chr5_1:56146945-56146964 | None:intergenic | 30.0% | |
| AGATTATACAAAGCCTAACA+AGG | + | chr5_1:56147243-56147262 | None:intergenic | 30.0% | |
| CATAAAACCTAACATTAGCA+TGG | + | chr5_1:56147286-56147305 | None:intergenic | 30.0% | |
| ATATATGAGATTGGATCAAC+TGG | - | chr5_1:56147467-56147486 | Msa0738400:CDS | 30.0% | |
| ATCAACTGGAATTAGTAGTT+TGG | - | chr5_1:56147481-56147500 | Msa0738400:CDS | 30.0% | |
| TCAACTGGAATTAGTAGTTT+GGG | - | chr5_1:56147482-56147501 | Msa0738400:CDS | 30.0% | |
| AACCTATTTACTTCTGTGTA+TGG | - | chr5_1:56147536-56147555 | Msa0738400:five_prime_UTR | 30.0% | |
| ACCTATTTACTTCTGTGTAT+GGG | - | chr5_1:56147537-56147556 | Msa0738400:five_prime_UTR | 30.0% | |
| TTCACTGACGTATATACTAA+GGG | + | chr5_1:56147569-56147588 | None:intergenic | 30.0% | |
| TTTCACTGACGTATATACTA+AGG | + | chr5_1:56147570-56147589 | None:intergenic | 30.0% | |
| !! | CTAAGGAATTTGCTAAATCA+GGG | + | chr5_1:56147800-56147819 | None:intergenic | 30.0% |
| !! | AGATGGTGTTTTTGTGAGAA+CGG | + | chr5_1:56143267-56143286 | None:intergenic | 35.0% |
| AATGAAGAAACAGAGGAAGA+TGG | + | chr5_1:56143284-56143303 | None:intergenic | 35.0% | |
| !! | GATTCGTTTGTTTTCGTTGA+TGG | + | chr5_1:56143379-56143398 | None:intergenic | 35.0% |
| TTGGATCATGAAAATGGAAG+AGG | + | chr5_1:56143401-56143420 | None:intergenic | 35.0% | |
| CTTAAACTAATCAGAAGCTC+CGG | - | chr5_1:56143434-56143453 | Msa0738400:three_prime_UTR | 35.0% | |
| AGAAAACCTTCATTTCGAAC+CGG | + | chr5_1:56143456-56143475 | None:intergenic | 35.0% | |
| ! | GTTCGAAATGAAGGTTTTCT+TGG | - | chr5_1:56143456-56143475 | Msa0738400:CDS | 35.0% |
| !!! | GATTTTGTTGTTATTAGCGG+CGG | - | chr5_1:56143521-56143540 | Msa0738400:CDS | 35.0% |
| ! | CTTGATCTTGGCTGATTTAA+CGG | + | chr5_1:56143613-56143632 | None:intergenic | 35.0% |
| AACCTTGAATCAGTGAAACT+GGG | + | chr5_1:56143735-56143754 | None:intergenic | 35.0% | |
| ! | TTTGGGACTAAGATTCTGTT+AGG | - | chr5_1:56143979-56143998 | Msa0738400:intron | 35.0% |
| TTGGGACTAAGATTCTGTTA+GGG | - | chr5_1:56143980-56143999 | Msa0738400:intron | 35.0% | |
| TAGCACTAACCTTCAAATCA+AGG | + | chr5_1:56144094-56144113 | None:intergenic | 35.0% | |
| GTAGTTGATCAAATGATCAC+TGG | + | chr5_1:56144528-56144547 | None:intergenic | 35.0% | |
| ATTTGATCAACTACGGAGTT+CGG | - | chr5_1:56144534-56144553 | Msa0738400:intron | 35.0% | |
| CTTTCAAAGTTAACTTACCC+TGG | - | chr5_1:56144936-56144955 | Msa0738400:intron | 35.0% | |
| TTGAGTCAGTACATATTGTG+TGG | - | chr5_1:56145176-56145195 | Msa0738400:intron | 35.0% | |
| TTTAGAAGACTTTCTGATGG+AGG | + | chr5_1:56145214-56145233 | None:intergenic | 35.0% | |
| TAGATTTGGACTTTACAACG+TGG | + | chr5_1:56145246-56145265 | None:intergenic | 35.0% | |
| GTAAAGTCCAAATCTAGAGA+CGG | - | chr5_1:56145250-56145269 | Msa0738400:intron | 35.0% | |
| GTTGAGGTTTGATATCAACA+CGG | - | chr5_1:56145285-56145304 | Msa0738400:intron | 35.0% | |
| TGGAATTCGCATTTGATGTT+TGG | - | chr5_1:56145404-56145423 | Msa0738400:intron | 35.0% | |
| ATACCAACGAATCTAACCAA+TGG | + | chr5_1:56145471-56145490 | None:intergenic | 35.0% | |
| GTTAGATTCGTTGGTATGTA+TGG | - | chr5_1:56145474-56145493 | Msa0738400:intron | 35.0% | |
| ! | TACTTTTATGCCTCTGCTTT+TGG | - | chr5_1:56145562-56145581 | Msa0738400:intron | 35.0% |
| !!! | TGTTTTAGTTCCAAAAGCAG+AGG | + | chr5_1:56145575-56145594 | None:intergenic | 35.0% |
| TAACTAATTAAGCTTGGAGC+AGG | - | chr5_1:56145611-56145630 | Msa0738400:CDS | 35.0% | |
| AACTAATTAAGCTTGGAGCA+GGG | - | chr5_1:56145612-56145631 | Msa0738400:CDS | 35.0% | |
| TAGCAGTTCAAACAAAGAAC+AGG | + | chr5_1:56145675-56145694 | None:intergenic | 35.0% | |
| AGGTCCTCATATAACAATGA+GGG | + | chr5_1:56145898-56145917 | None:intergenic | 35.0% | |
| CACAACAAGGACAAAATAAC+AGG | + | chr5_1:56145918-56145937 | None:intergenic | 35.0% | |
| !!! | CTGTTATTTTGTCCTTGTTG+TGG | - | chr5_1:56145916-56145935 | Msa0738400:CDS | 35.0% |
| TTTCAGTTAGATCCACAACA+AGG | + | chr5_1:56145931-56145950 | None:intergenic | 35.0% | |
| TTGTTGTGGATCTAACTGAA+AGG | - | chr5_1:56145930-56145949 | Msa0738400:CDS | 35.0% | |
| TATCTCTCTGATCTGAACAT+GGG | + | chr5_1:56146085-56146104 | None:intergenic | 35.0% | |
| TTATCTCTCTGATCTGAACA+TGG | + | chr5_1:56146086-56146105 | None:intergenic | 35.0% | |
| !! | AATTTAGATATGGTGGATGG+TGG | - | chr5_1:56146182-56146201 | Msa0738400:intron | 35.0% |
| TGCAATATCTTCACAATTCC+TGG | + | chr5_1:56146446-56146465 | None:intergenic | 35.0% | |
| ATTACCTTTAACCCATAACG+GGG | + | chr5_1:56146503-56146522 | None:intergenic | 35.0% | |
| AATGTCAGAAAGGAGAAAGA+CGG | + | chr5_1:56146649-56146668 | None:intergenic | 35.0% | |
| AACACCATCTAATCCAAAGA+AGG | + | chr5_1:56146824-56146843 | None:intergenic | 35.0% | |
| CAATGTACAGGGTGTAATAA+AGG | + | chr5_1:56146933-56146952 | None:intergenic | 35.0% | |
| GAAAACATGCTATGATAGCT+AGG | + | chr5_1:56147106-56147125 | None:intergenic | 35.0% | |
| TGAAGTTCCATGCTAATGTT+AGG | - | chr5_1:56147276-56147295 | Msa0738400:intron | 35.0% | |
| AAATCAAACATTGCTCTCGT+TGG | - | chr5_1:56147325-56147344 | Msa0738400:intron | 35.0% | |
| CACATGCATCTTCTTTGTAT+GGG | + | chr5_1:56147376-56147395 | None:intergenic | 35.0% | |
| ACACATGCATCTTCTTTGTA+TGG | + | chr5_1:56147377-56147396 | None:intergenic | 35.0% | |
| TATTTACTTCTGTGTATGGG+CGG | - | chr5_1:56147540-56147559 | Msa0738400:five_prime_UTR | 35.0% | |
| ATAAATGACTAACGTGAACG+TGG | + | chr5_1:56147734-56147753 | None:intergenic | 35.0% | |
| !! | CCTAAGGAATTTGCTAAATC+AGG | + | chr5_1:56147801-56147820 | None:intergenic | 35.0% |
| CCTGATTTAGCAAATTCCTT+AGG | - | chr5_1:56147798-56147817 | Msa0738400:five_prime_UTR | 35.0% | |
| ! | TGTGTTTGGAATGAAGGAGA+GGG | + | chr5_1:56143156-56143175 | None:intergenic | 40.0% |
| ! | ATGTGTTTGGAATGAAGGAG+AGG | + | chr5_1:56143157-56143176 | None:intergenic | 40.0% |
| GTTGATGCACGCAATATGAA+TGG | + | chr5_1:56143212-56143231 | None:intergenic | 40.0% | |
| TGGTTAAGGAGACATGAATC+AGG | + | chr5_1:56143359-56143378 | None:intergenic | 40.0% | |
| CGTGTCTTGGATCATGAAAA+TGG | + | chr5_1:56143407-56143426 | None:intergenic | 40.0% | |
| AGTGAAACTGGGAATTTGAG+GGG | + | chr5_1:56143724-56143743 | None:intergenic | 40.0% | |
| CAGTGAAACTGGGAATTTGA+GGG | + | chr5_1:56143725-56143744 | None:intergenic | 40.0% | |
| TCAGTGAAACTGGGAATTTG+AGG | + | chr5_1:56143726-56143745 | None:intergenic | 40.0% | |
| !! | TTCCCAGTTTCACTGATTCA+AGG | - | chr5_1:56143730-56143749 | Msa0738400:intron | 40.0% |
| GAACCTTGAATCAGTGAAAC+TGG | + | chr5_1:56143736-56143755 | None:intergenic | 40.0% | |
| !! | TTGTAACGAGCTTTTGGTGT+TGG | - | chr5_1:56144211-56144230 | Msa0738400:intron | 40.0% |
| !!! | TGTAACGAGCTTTTGGTGTT+GGG | - | chr5_1:56144212-56144231 | Msa0738400:intron | 40.0% |
| !!! | GCTTTTGGTGTTGGGAATTT+TGG | - | chr5_1:56144220-56144239 | Msa0738400:intron | 40.0% |
| GCATATATACTCCTCGGATT+AGG | - | chr5_1:56144258-56144277 | Msa0738400:intron | 40.0% | |
| ATACGATACATATCCGACAC+CGG | + | chr5_1:56144290-56144309 | None:intergenic | 40.0% | |
| TGGAAGTAGAAACGATTACC+TGG | - | chr5_1:56144474-56144493 | Msa0738400:intron | 40.0% | |
| GATCAGTAATTCGTAGCTGA+TGG | - | chr5_1:56144556-56144575 | Msa0738400:intron | 40.0% | |
| !!! | AGTGTGTTTTTGGTCAGTGT+TGG | - | chr5_1:56144586-56144605 | Msa0738400:CDS | 40.0% |
| !!! | GTGTGTTTTTGGTCAGTGTT+GGG | - | chr5_1:56144587-56144606 | Msa0738400:CDS | 40.0% |
| GAGGGAAACAAAACAGAATC+TGG | - | chr5_1:56144970-56144989 | Msa0738400:intron | 40.0% | |
| !! | ATATGTACTGACTCAAGTCG+AGG | + | chr5_1:56145172-56145191 | None:intergenic | 40.0% |
| AGACTTTCTGATGGAGGATT+GGG | + | chr5_1:56145208-56145227 | None:intergenic | 40.0% | |
| AAGACTTTCTGATGGAGGAT+TGG | + | chr5_1:56145209-56145228 | None:intergenic | 40.0% | |
| ATATCGTCCGTCTCTAGATT+TGG | + | chr5_1:56145260-56145279 | None:intergenic | 40.0% | |
| TGTCATATTTCCCTGCTCTT+CGG | - | chr5_1:56145381-56145400 | Msa0738400:intron | 40.0% | |
| ! | TGTCCATTGGTTAGATTCGT+TGG | - | chr5_1:56145465-56145484 | Msa0738400:intron | 40.0% |
| CCTCATATAACAATGAGGGT+CGG | + | chr5_1:56145894-56145913 | None:intergenic | 40.0% | |
| CAGGTCCTCATATAACAATG+AGG | + | chr5_1:56145899-56145918 | None:intergenic | 40.0% | |
| ACTAGCAGCTACTTAAAGCA+TGG | + | chr5_1:56145991-56146010 | None:intergenic | 40.0% | |
| TTTGTGAAAGAATGCTGCCT+TGG | + | chr5_1:56146245-56146264 | None:intergenic | 40.0% | |
| TTTCTTGTCGCAAATGCAAC+TGG | - | chr5_1:56146472-56146491 | Msa0738400:intron | 40.0% | |
| TTACCTTTAACCCATAACGG+GGG | + | chr5_1:56146502-56146521 | None:intergenic | 40.0% | |
| GAGGAACTTCTGAACTAAAC+AGG | + | chr5_1:56146589-56146608 | None:intergenic | 40.0% | |
| !! | GTTTTGAGCTAGTGAAGTTG+AGG | + | chr5_1:56146608-56146627 | None:intergenic | 40.0% |
| ATGTCAGAAAGGAGAAAGAC+GGG | + | chr5_1:56146648-56146667 | None:intergenic | 40.0% | |
| ATCTAATCCAAAGAAGGAGG+GGG | + | chr5_1:56146818-56146837 | None:intergenic | 40.0% | |
| CATCTAATCCAAAGAAGGAG+GGG | + | chr5_1:56146819-56146838 | None:intergenic | 40.0% | |
| CCATCTAATCCAAAGAAGGA+GGG | + | chr5_1:56146820-56146839 | None:intergenic | 40.0% | |
| ACCATCTAATCCAAAGAAGG+AGG | + | chr5_1:56146821-56146840 | None:intergenic | 40.0% | |
| ! | GACTCTTTTGTTCCTTTCTG+TGG | - | chr5_1:56147061-56147080 | Msa0738400:intron | 40.0% |
| CTAGGCATCATTGCACAATT+TGG | + | chr5_1:56147088-56147107 | None:intergenic | 40.0% | |
| ACAACTTGTCGCAAAACACT+GGG | + | chr5_1:56147207-56147226 | None:intergenic | 40.0% | |
| ATGGGCGACATGTATTAACA+TGG | + | chr5_1:56147358-56147377 | None:intergenic | 40.0% | |
| ! | GTGGATTTTGCCTTTGTTAC+AGG | - | chr5_1:56147440-56147459 | Msa0738400:CDS | 40.0% |
| ACTGGAATTAGTAGTTTGGG+AGG | - | chr5_1:56147485-56147504 | Msa0738400:CDS | 40.0% | |
| GCCCATACACAGAAGTAAAT+AGG | + | chr5_1:56147541-56147560 | None:intergenic | 40.0% | |
| !! | ATAGTCGCAATGTCTGGTTT+TGG | - | chr5_1:56147597-56147616 | Msa0738400:five_prime_UTR | 40.0% |
| !!! | CAATGTCTGGTTTTGGTGAT+TGG | - | chr5_1:56147604-56147623 | Msa0738400:five_prime_UTR | 40.0% |
| !! | GACAAAAAGCATCCTAACAG+AGG | + | chr5_1:56147864-56147883 | None:intergenic | 40.0% |
| ! | TTTGGAATGAAGGAGAGGGA+AGG | + | chr5_1:56143152-56143171 | None:intergenic | 45.0% |
| ! | GGTTCGGAGTTGAGAGATTT+TGG | + | chr5_1:56143234-56143253 | None:intergenic | 45.0% |
| !!! | GAACGGTGGTGTTTTTGGTT+CGG | + | chr5_1:56143250-56143269 | None:intergenic | 45.0% |
| ! | TGTGAGAACGGTGGTGTTTT+TGG | + | chr5_1:56143255-56143274 | None:intergenic | 45.0% |
| !! | TGGTGTTTTTGTGAGAACGG+TGG | + | chr5_1:56143264-56143283 | None:intergenic | 45.0% |
| AGGAGACATGAATCAGGTGA+TGG | + | chr5_1:56143353-56143372 | None:intergenic | 45.0% | |
| !! | TTACTGAACCGAACCGGTTT+TGG | - | chr5_1:56143483-56143502 | Msa0738400:CDS | 45.0% |
| GAAACCTCTGTTCAATCCGA+CGG | + | chr5_1:56143572-56143591 | None:intergenic | 45.0% | |
| GTCGGATTGAACAGAGGTTT+CGG | - | chr5_1:56143571-56143590 | Msa0738400:CDS | 45.0% | |
| ! | GATCTTGGCTGATTTAACGG+TGG | + | chr5_1:56143610-56143629 | None:intergenic | 45.0% |
| ! | CTTCTCGCGTTTTCTTCTAC+TGG | - | chr5_1:56143663-56143682 | Msa0738400:intron | 45.0% |
| TACGATACATATCCGACACC+GGG | + | chr5_1:56144289-56144308 | None:intergenic | 45.0% | |
| CTGAAGTCATGCTTGAGAGA+AGG | - | chr5_1:56144838-56144857 | Msa0738400:CDS | 45.0% | |
| ACGGACGATATGTGAAGTTG+AGG | - | chr5_1:56145269-56145288 | Msa0738400:intron | 45.0% | |
| TGATGTTTGGCAAAGTGCAC+CGG | - | chr5_1:56145417-56145436 | Msa0738400:intron | 45.0% | |
| ACAAATCCCACCATTGCATC+CGG | + | chr5_1:56145439-56145458 | None:intergenic | 45.0% | |
| GATTTGTACCTCGTGTCCAT+TGG | - | chr5_1:56145452-56145471 | Msa0738400:intron | 45.0% | |
| GAATCTAACCAATGGACACG+AGG | + | chr5_1:56145463-56145482 | None:intergenic | 45.0% | |
| TGGGGATTATGGCTGTTAGA+GGG | + | chr5_1:56145704-56145723 | None:intergenic | 45.0% | |
| TTGGGGATTATGGCTGTTAG+AGG | + | chr5_1:56145705-56145724 | None:intergenic | 45.0% | |
| CCGACCCTCATTGTTATATG+AGG | - | chr5_1:56145891-56145910 | Msa0738400:CDS | 45.0% | |
| ATATAGCATGGTGCTCTCCA+AGG | - | chr5_1:56146225-56146244 | Msa0738400:intron | 45.0% | |
| AATTCTTCCCCCTCCTTCTT+TGG | - | chr5_1:56146808-56146827 | Msa0738400:intron | 45.0% | |
| ! | CCCTCCTTCTTTGGATTAGA+TGG | - | chr5_1:56146817-56146836 | Msa0738400:intron | 45.0% |
| AGGAACAAGAAGTCAAGGAC+TGG | + | chr5_1:56146913-56146932 | None:intergenic | 45.0% | |
| GCACAATTTGGTCCACAGAA+AGG | + | chr5_1:56147076-56147095 | None:intergenic | 45.0% | |
| CACAACTTGTCGCAAAACAC+TGG | + | chr5_1:56147208-56147227 | None:intergenic | 45.0% | |
| GTACACTGTCTCACCTTGTT+AGG | - | chr5_1:56147227-56147246 | Msa0738400:intron | 45.0% | |
| !! | AGGTTTTATGCTGCCCATCA+TGG | - | chr5_1:56147296-56147315 | Msa0738400:intron | 45.0% |
| GTTTGGGAGGTCATAGTGAA+CGG | - | chr5_1:56147498-56147517 | Msa0738400:CDS | 45.0% | |
| CCAGACATTGCGACTATCAA+CGG | + | chr5_1:56147594-56147613 | None:intergenic | 45.0% | |
| !! | ATCAGGTGATGGATGACACG+TGG | + | chr5_1:56143342-56143361 | None:intergenic | 50.0% |
| ! | GAAGCTCCGGTTCGAAATGA+AGG | - | chr5_1:56143447-56143466 | Msa0738400:exon | 50.0% |
| GGTTCGTTACTGAACCGAAC+CGG | - | chr5_1:56143477-56143496 | Msa0738400:CDS | 50.0% | |
| TTATTAGCGGCGGTGATGAG+AGG | - | chr5_1:56143531-56143550 | Msa0738400:CDS | 50.0% | |
| TATTAGCGGCGGTGATGAGA+GGG | - | chr5_1:56143532-56143551 | Msa0738400:CDS | 50.0% | |
| TGAACCGTCGGATTGAACAG+AGG | - | chr5_1:56143565-56143584 | Msa0738400:CDS | 50.0% | |
| TACCCTGGAATCAGAGAGAG+AGG | - | chr5_1:56144951-56144970 | Msa0738400:intron | 50.0% | |
| ACCCTGGAATCAGAGAGAGA+GGG | - | chr5_1:56144952-56144971 | Msa0738400:intron | 50.0% | |
| TCCCTCTCTCTCTGATTCCA+GGG | + | chr5_1:56144956-56144975 | None:intergenic | 50.0% | |
| TTCCCTCTCTCTCTGATTCC+AGG | + | chr5_1:56144957-56144976 | None:intergenic | 50.0% | |
| CATATTTCCCTGCTCTTCGG+TGG | - | chr5_1:56145384-56145403 | Msa0738400:intron | 50.0% | |
| GTGGACGGGTACATATAGCA+TGG | - | chr5_1:56146213-56146232 | Msa0738400:intron | 50.0% | |
| ACACTGGGTAGCATGGTCAT+TGG | + | chr5_1:56147192-56147211 | None:intergenic | 50.0% | |
| TCGCAAAACACTGGGTAGCA+TGG | + | chr5_1:56147199-56147218 | None:intergenic | 50.0% | |
| !! | CCGTTGATAGTCGCAATGTC+TGG | - | chr5_1:56147591-56147610 | Msa0738400:five_prime_UTR | 50.0% |
| CTAAGGCAGCATCCTCTGTT+AGG | - | chr5_1:56147849-56147868 | Msa0738400:five_prime_UTR | 50.0% | |
| !! | GGTGATGGATGACACGTGGA+TGG | + | chr5_1:56143338-56143357 | None:intergenic | 55.0% |
| ! | GGAGCTGTTGGTTGAACCGT+CGG | - | chr5_1:56143553-56143572 | Msa0738400:CDS | 55.0% |
| GCGAATTCCACCGAAGAGCA+GGG | + | chr5_1:56145394-56145413 | None:intergenic | 55.0% | |
| TGCGAATTCCACCGAAGAGC+AGG | + | chr5_1:56145395-56145414 | None:intergenic | 55.0% | |
| GCAAAGTGCACCGGATGCAA+TGG | - | chr5_1:56145426-56145445 | Msa0738400:intron | 55.0% | |
| AAGTGCACCGGATGCAATGG+TGG | - | chr5_1:56145429-56145448 | Msa0738400:intron | 55.0% | |
| AGTGCACCGGATGCAATGGT+GGG | - | chr5_1:56145430-56145449 | Msa0738400:intron | 55.0% | |
| !! | ATGGTGGATGGTGGTCTGTG+TGG | - | chr5_1:56146191-56146210 | Msa0738400:intron | 55.0% |
| ! | ATGGTGGTCTGTGTGGTGGA+CGG | - | chr5_1:56146198-56146217 | Msa0738400:intron | 55.0% |
| AACTGGTGCACCCCCGTTAT+GGG | - | chr5_1:56146489-56146508 | Msa0738400:intron | 55.0% | |
| ! | GCACCCCCGTTATGGGTTAA+AGG | - | chr5_1:56146496-56146515 | Msa0738400:intron | 55.0% |
| CGGTGATGAGAGGGAGCTGT+TGG | - | chr5_1:56143541-56143560 | Msa0738400:CDS | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | - | chr5_1:56144268-56144287 | Msa0738400:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr5_1:56144274-56144293 | Msa0738400:intron | 60.0% | |
| ! | GTGGATGGTGGTCTGTGTGG+TGG | - | chr5_1:56146194-56146213 | Msa0738400:intron | 60.0% |
| !! | TGGTGGTCTGTGTGGTGGAC+GGG | - | chr5_1:56146199-56146218 | Msa0738400:intron | 60.0% |
| CAACTGGTGCACCCCCGTTA+TGG | - | chr5_1:56146488-56146507 | Msa0738400:intron | 60.0% | |
| ACCGGGACACGCCTAATCCG+AGG | + | chr5_1:56144272-56144291 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 56143144 | 56147934 | 56143144 | ID=Msa0738400;Name=Msa0738400 |
| chr5_1 | mRNA | 56143144 | 56147934 | 56143144 | ID=Msa0738400-mRNA-1;Parent=Msa0738400;Name=Msa0738400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=402|1|1|1|1|1|5|312|332 |
| chr5_1 | exon | 56143144 | 56143616 | 56143144 | ID=Msa0738400-mRNA-1:exon:15904;Parent=Msa0738400-mRNA-1 |
| chr5_1 | exon | 56144561 | 56144631 | 56144561 | ID=Msa0738400-mRNA-1:exon:15903;Parent=Msa0738400-mRNA-1 |
| chr5_1 | exon | 56144749 | 56144912 | 56144749 | ID=Msa0738400-mRNA-1:exon:15902;Parent=Msa0738400-mRNA-1 |
| chr5_1 | exon | 56145592 | 56145988 | 56145592 | ID=Msa0738400-mRNA-1:exon:15901;Parent=Msa0738400-mRNA-1 |
| chr5_1 | exon | 56147327 | 56147934 | 56147327 | ID=Msa0738400-mRNA-1:exon:15900;Parent=Msa0738400-mRNA-1 |
| chr5_1 | five_prime_UTR | 56147533 | 56147934 | 56147533 | ID=Msa0738400-mRNA-1:five_prime_utr;Parent=Msa0738400-mRNA-1 |
| chr5_1 | CDS | 56147327 | 56147532 | 56147327 | ID=Msa0738400-mRNA-1:cds;Parent=Msa0738400-mRNA-1 |
| chr5_1 | CDS | 56145592 | 56145988 | 56145592 | ID=Msa0738400-mRNA-1:cds;Parent=Msa0738400-mRNA-1 |
| chr5_1 | CDS | 56144749 | 56144912 | 56144749 | ID=Msa0738400-mRNA-1:cds;Parent=Msa0738400-mRNA-1 |
| chr5_1 | CDS | 56144561 | 56144631 | 56144561 | ID=Msa0738400-mRNA-1:cds;Parent=Msa0738400-mRNA-1 |
| chr5_1 | CDS | 56143456 | 56143616 | 56143456 | ID=Msa0738400-mRNA-1:cds;Parent=Msa0738400-mRNA-1 |
| chr5_1 | three_prime_UTR | 56143144 | 56143455 | 56143144 | ID=Msa0738400-mRNA-1:three_prime_utr;Parent=Msa0738400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
