AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1242160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1242160 MtrunA17_Chr8g0355721 91.667 156 13 0 1 156 1 156 1.97e-105 298
Msa1242160 MtrunA17_Chr8g0355741 80.892 157 29 1 1 156 1 157 7.79e-93 266
Msa1242160 MtrunA17_Chr8g0355661 77.707 157 33 2 1 156 1 156 4.32e-88 254
Msa1242160 MtrunA17_Chr8g0355781 75.658 152 37 0 1 152 1 152 2.09e-86 249
Msa1242160 MtrunA17_Chr8g0355811 73.856 153 39 1 1 153 1 152 1.32e-83 242
Msa1242160 MtrunA17_Chr8g0355761 74.342 152 39 0 1 152 1 152 1.66e-83 242
Msa1242160 MtrunA17_Chr8g0355641 69.872 156 46 1 1 155 1 156 7.46e-81 235
Msa1242160 MtrunA17_Chr8g0355821 70.588 153 44 1 1 153 1 152 6.98e-80 233
Msa1242160 MtrunA17_Chr8g0355801 69.935 153 45 1 1 153 1 152 5.65e-78 228
Msa1242160 MtrunA17_Chr8g0355791 68.627 153 47 1 1 153 1 152 6.94e-76 223
Msa1242160 MtrunA17_Chr8g0355771 67.320 153 49 1 1 153 1 152 1.48e-74 219
Msa1242160 MtrunA17_Chr1g0160381 41.176 153 87 2 1 151 5 156 1.43e-40 133
Msa1242160 MtrunA17_Chr1g0160371 42.484 153 85 2 1 151 1 152 1.56e-40 133
Msa1242160 MtrunA17_Chr1g0160391 36.538 156 91 4 1 149 1 155 6.12e-29 104
Msa1242160 MtrunA17_Chr8g0339261 35.616 146 91 3 6 150 8 151 1.40e-28 103
Msa1242160 MtrunA17_Chr1g0160801 37.838 148 83 5 7 152 7 147 7.41e-26 95.9
Msa1242160 MtrunA17_Chr1g0160351 45.161 93 49 1 61 151 1 93 1.51e-22 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1242160 AT5G28010.1 36.242 149 92 3 3 149 15 162 7.59e-27 99.4
Msa1242160 AT5G28010.2 36.242 149 92 3 3 149 15 162 7.59e-27 99.4
Msa1242160 AT1G70890.1 37.584 149 90 3 3 149 7 154 2.76e-26 97.8
Msa1242160 AT1G70830.5 34.899 149 94 3 3 149 22 169 5.49e-24 92.0
Msa1242160 AT1G70830.3 34.899 149 94 3 3 149 22 169 9.60e-24 92.4
Msa1242160 AT1G70840.1 32.886 149 97 3 3 149 20 167 2.18e-23 90.5
Msa1242160 AT1G70830.2 34.899 149 94 3 3 149 22 169 3.72e-23 92.0
Msa1242160 AT1G70830.1 34.899 149 94 3 3 149 22 169 9.62e-23 92.4
Msa1242160 AT1G70830.1 33.557 149 96 3 3 149 184 331 3.46e-21 88.2
Msa1242160 AT5G28000.1 32.886 149 97 3 3 149 13 160 9.83e-23 88.6
Msa1242160 AT1G70870.1 36.601 153 80 4 1 151 1 138 5.54e-22 86.3
Msa1242160 AT1G70830.4 33.557 149 96 3 3 149 137 284 1.25e-21 88.6
Msa1242160 AT1G70830.4 30.435 92 63 1 59 149 31 122 4.28e-11 59.7
Msa1242160 AT1G70850.2 32.886 149 97 3 3 149 9 156 1.67e-21 87.4
Msa1242160 AT1G23120.1 31.469 143 93 3 7 149 7 144 2.91e-21 84.3
Msa1242160 AT1G70850.3 32.886 149 97 3 3 149 9 156 4.61e-21 87.4
Msa1242160 AT1G70850.3 33.094 139 90 3 13 149 175 312 8.87e-20 84.0
Msa1242160 AT1G70850.1 32.886 149 97 3 3 149 9 156 4.61e-21 87.4
Msa1242160 AT1G70850.1 33.094 139 90 3 13 149 175 312 8.87e-20 84.0
Msa1242160 AT4G23670.1 34.641 153 97 3 1 152 1 151 7.56e-21 83.6
Msa1242160 AT1G23120.2 31.469 143 93 3 7 149 57 194 8.71e-21 84.7
Msa1242160 AT1G23130.1 29.730 148 102 2 3 149 10 156 2.24e-20 82.4
Msa1242160 AT1G70880.1 30.872 149 100 3 3 149 8 155 5.60e-20 81.6
Msa1242160 AT2G01520.1 32.026 153 101 3 1 152 1 151 6.67e-19 78.6
Msa1242160 AT4G23680.1 32.026 153 101 3 1 152 1 151 3.32e-18 76.6
Msa1242160 AT1G14930.1 32.298 161 92 5 1 153 1 152 1.54e-17 75.1
Msa1242160 AT2G01530.1 32.026 153 101 3 1 152 1 151 1.85e-17 74.7
Msa1242160 AT4G14060.1 32.680 153 100 3 1 152 1 151 3.94e-17 73.9
Msa1242160 AT1G35260.1 28.966 145 99 3 7 149 6 148 5.15e-17 73.6
Msa1242160 AT1G24020.1 32.692 156 103 2 1 155 1 155 4.03e-16 71.2
Msa1242160 AT1G24020.2 32.692 156 103 2 1 155 1 155 4.03e-16 71.2
Msa1242160 AT1G30990.1 32.000 150 98 4 1 149 1 147 2.69e-15 68.9
Msa1242160 AT1G14940.1 30.000 150 102 3 1 149 1 148 3.14e-14 66.2
Msa1242160 AT3G26460.1 32.051 156 98 5 1 152 1 152 9.83e-14 65.1
Msa1242160 AT1G14950.1 28.947 152 105 3 1 151 1 150 1.20e-13 64.7
Msa1242160 AT1G14960.1 28.571 154 107 3 1 153 1 152 7.18e-12 60.1
Msa1242160 AT3G26450.1 27.273 154 108 4 1 152 1 152 3.53e-11 58.2

Find 41 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCACTGCTGCTGCTAAA+TGG 0.310932 8_2:+26243094 Msa1242160:CDS
CTTCCCTTTCTTCTAAGAAA+TGG 0.349077 8_2:+26241970 Msa1242160:exon
TATGTGATGAAATCAATAAA+TGG 0.369456 8_2:+26243427 Msa1242160:three_prime_UTR
CACCCTTATCAATGACTTCA+AGG 0.380806 8_2:-26243071 None:intergenic
TTATAGAGCTATCTTTGCTT+TGG 0.392094 8_2:-26243214 None:intergenic
AATTAGTGTGATATTTGTAA+TGG 0.409729 8_2:+26243311 Msa1242160:three_prime_UTR
ATATTGTTGCATATGCATAT+TGG 0.412178 8_2:+26243335 Msa1242160:three_prime_UTR
TAGTAATGGGTTATTGCATT+GGG 0.416848 8_2:+26243261 Msa1242160:three_prime_UTR
TGTAACAAATAACTAGTAAT+GGG 0.422186 8_2:+26243248 Msa1242160:three_prime_UTR
AGCACCATTTCTTAGAAGAA+AGG 0.435379 8_2:-26241974 None:intergenic
TTCTAAGAAATGGTGCTCTC+TGG 0.436928 8_2:+26241980 Msa1242160:exon
CATCCTTGAAGTCATTGATA+AGG 0.445764 8_2:+26243068 Msa1242160:CDS
AAGTATTCCATGTAGCCATT+TGG 0.448595 8_2:-26243156 None:intergenic
CTTCTATGTGATGTTTGTAA+TGG 0.450639 8_2:+26243358 Msa1242160:three_prime_UTR
CTAGTAATGGGTTATTGCAT+TGG 0.451009 8_2:+26243260 Msa1242160:three_prime_UTR
AACACTTATAAGCTCTTTGG+TGG 0.457999 8_2:+26243012 Msa1242160:CDS
GCACCATTTCTTAGAAGAAA+GGG 0.460369 8_2:-26241973 None:intergenic
ATGTAACAAATAACTAGTAA+TGG 0.468583 8_2:+26243247 Msa1242160:three_prime_UTR
AACTTCATGAAGGTGAAGAT+TGG 0.478377 8_2:+26242113 Msa1242160:CDS
GGTAAGCTCAGTACTGAAGT+TGG 0.490802 8_2:+26242001 Msa1242160:CDS
AATGGGTTATTGCATTGGGT+TGG 0.493837 8_2:+26243265 Msa1242160:three_prime_UTR
ATCCTTGAAGTCATTGATAA+GGG 0.494628 8_2:+26243069 Msa1242160:CDS
AGATATTGATGAGCACTATA+AGG 0.500590 8_2:+26243035 Msa1242160:CDS
GAACAGATTGTAGAACTTGT+CGG 0.501167 8_2:-26242038 None:intergenic
TATTCCATGTAGCCATTTGG+AGG 0.517921 8_2:-26243153 None:intergenic
AGATTGGCATCACACTGATT+CGG 0.519723 8_2:+26242129 Msa1242160:CDS
AATGGCTACATGGAATACTT+TGG 0.525683 8_2:+26243159 Msa1242160:CDS
TGACCCTCCAAATGGCTACA+TGG 0.526835 8_2:+26243149 Msa1242160:CDS
GAGGATATTGACCCTCCAAA+TGG 0.540200 8_2:+26243141 Msa1242160:CDS
TATGATGAACTCTTTCACAA+AGG 0.552779 8_2:-26242087 None:intergenic
ACACTTTCATCAACTCACAT+AGG 0.573859 8_2:+26241929 None:intergenic
GAAGTCATTGATAAGGGTGA+TGG 0.579318 8_2:+26243075 Msa1242160:CDS
ATCATAATTCACAGATGGCA+AGG 0.582682 8_2:+26242939 Msa1242160:intron
CATCATACAAAACTTCATGA+AGG 0.606616 8_2:+26242103 Msa1242160:CDS
ACACTGATTCGGTTAAACAC+TGG 0.614381 8_2:+26242140 Msa1242160:CDS
ATTCCATGTAGCCATTTGGA+GGG 0.625101 8_2:-26243152 None:intergenic
AGATTGTAGAACTTGTCGGC+GGG 0.646397 8_2:-26242034 None:intergenic
AAACACTGGACTTACGTCGT+AGG 0.657929 8_2:+26242154 Msa1242160:CDS
TGAATATGAAAAGATCAATG+AGG 0.667026 8_2:+26243122 Msa1242160:CDS
CAGATTGTAGAACTTGTCGG+CGG 0.688816 8_2:-26242035 None:intergenic
AGTGTGATGTCTGTACATGA+CGG 0.731855 8_2:+26243385 Msa1242160:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGAATAATAAATATTTATA+AGG - chr8_2:26242783-26242802 None:intergenic 10.0%
!!! ATAGTTTATTTGTTAAAAAA+TGG + chr8_2:26242848-26242867 Msa1242160:intron 10.0%
!!! TAGTTTATTTGTTAAAAAAT+GGG + chr8_2:26242849-26242868 Msa1242160:intron 10.0%
!! AGGAATAATAAATATTTATA+AGG - chr8_2:26242783-26242802 None:intergenic 10.0%
!!! ATAGTTTATTTGTTAAAAAA+TGG + chr8_2:26242848-26242867 Msa1242160:intron 10.0%
!!! TAGTTTATTTGTTAAAAAAT+GGG + chr8_2:26242849-26242868 Msa1242160:intron 10.0%
!! AATTAAATAAGATGATGATT+TGG - chr8_2:26242216-26242235 None:intergenic 15.0%
!! AAAAAAAATCAACAATCATT+TGG + chr8_2:26242539-26242558 Msa1242160:intron 15.0%
!! AAAAAAATCAACAATCATTT+GGG + chr8_2:26242540-26242559 Msa1242160:intron 15.0%
!! ACAAATAAAAATGAAAACTT+TGG - chr8_2:26242903-26242922 None:intergenic 15.0%
!! AATTAAATAAGATGATGATT+TGG - chr8_2:26242216-26242235 None:intergenic 15.0%
!! AAAAAAAATCAACAATCATT+TGG + chr8_2:26242539-26242558 Msa1242160:intron 15.0%
!! AAAAAAATCAACAATCATTT+GGG + chr8_2:26242540-26242559 Msa1242160:intron 15.0%
!! ACAAATAAAAATGAAAACTT+TGG - chr8_2:26242903-26242922 None:intergenic 15.0%
!!! TGTTGATTTTTTTTGTCATA+AGG - chr8_2:26242533-26242552 None:intergenic 20.0%
!! ATGTAACAAATAACTAGTAA+TGG + chr8_2:26243247-26243266 Msa1242160:three_prime_UTR 20.0%
!! TGTAACAAATAACTAGTAAT+GGG + chr8_2:26243248-26243267 Msa1242160:three_prime_UTR 20.0%
!! AATTAGTGTGATATTTGTAA+TGG + chr8_2:26243311-26243330 Msa1242160:three_prime_UTR 20.0%
!! TATGTGATGAAATCAATAAA+TGG + chr8_2:26243427-26243446 Msa1242160:three_prime_UTR 20.0%
!!! TGTTGATTTTTTTTGTCATA+AGG - chr8_2:26242533-26242552 None:intergenic 20.0%
!! ATGTAACAAATAACTAGTAA+TGG + chr8_2:26243247-26243266 Msa1242160:three_prime_UTR 20.0%
!! TGTAACAAATAACTAGTAAT+GGG + chr8_2:26243248-26243267 Msa1242160:three_prime_UTR 20.0%
!! AATTAGTGTGATATTTGTAA+TGG + chr8_2:26243311-26243330 Msa1242160:three_prime_UTR 20.0%
!! TATGTGATGAAATCAATAAA+TGG + chr8_2:26243427-26243446 Msa1242160:three_prime_UTR 20.0%
! ATAAGAAAGAAACAAGTACA+TGG + chr8_2:26242320-26242339 Msa1242160:intron 25.0%
! TTGGGAAGAAAAAAAAATCA+GGG - chr8_2:26242403-26242422 None:intergenic 25.0%
! TTTGGGAAGAAAAAAAAATC+AGG - chr8_2:26242404-26242423 None:intergenic 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG - chr8_2:26242421-26242440 None:intergenic 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG - chr8_2:26242422-26242441 None:intergenic 25.0%
! AGATTATGAGATCTCAAAAA+TGG + chr8_2:26242636-26242655 Msa1242160:intron 25.0%
!! AACCACAGTTTTTCTTTATA+TGG - chr8_2:26242758-26242777 None:intergenic 25.0%
! AAAAACACTTATAAGCTCTT+TGG + chr8_2:26243009-26243028 Msa1242160:CDS 25.0%
! TGAATATGAAAAGATCAATG+AGG + chr8_2:26243122-26243141 Msa1242160:CDS 25.0%
! ATATTGTTGCATATGCATAT+TGG + chr8_2:26243335-26243354 Msa1242160:three_prime_UTR 25.0%
! ATAAGAAAGAAACAAGTACA+TGG + chr8_2:26242320-26242339 Msa1242160:intron 25.0%
! TTGGGAAGAAAAAAAAATCA+GGG - chr8_2:26242403-26242422 None:intergenic 25.0%
! TTTGGGAAGAAAAAAAAATC+AGG - chr8_2:26242404-26242423 None:intergenic 25.0%
!! CTATCTTGAAAATGGTTTTT+GGG - chr8_2:26242421-26242440 None:intergenic 25.0%
!! TCTATCTTGAAAATGGTTTT+TGG - chr8_2:26242422-26242441 None:intergenic 25.0%
! AGATTATGAGATCTCAAAAA+TGG + chr8_2:26242636-26242655 Msa1242160:intron 25.0%
!! AACCACAGTTTTTCTTTATA+TGG - chr8_2:26242758-26242777 None:intergenic 25.0%
! AAAAACACTTATAAGCTCTT+TGG + chr8_2:26243009-26243028 Msa1242160:CDS 25.0%
! TGAATATGAAAAGATCAATG+AGG + chr8_2:26243122-26243141 Msa1242160:CDS 25.0%
! ATATTGTTGCATATGCATAT+TGG + chr8_2:26243335-26243354 Msa1242160:three_prime_UTR 25.0%
TATGATGAACTCTTTCACAA+AGG - chr8_2:26242090-26242109 None:intergenic 30.0%
CATCATACAAAACTTCATGA+AGG + chr8_2:26242103-26242122 Msa1242160:CDS 30.0%
!! TGATGATTTGGTTATTGATC+AGG - chr8_2:26242204-26242223 None:intergenic 30.0%
TACATTCTACAAACCAAACA+TGG + chr8_2:26242373-26242392 Msa1242160:intron 30.0%
TGGGAAGAAAAAAAAATCAG+GGG - chr8_2:26242402-26242421 None:intergenic 30.0%
! TGAAGCATCTATCTTGAAAA+TGG - chr8_2:26242429-26242448 None:intergenic 30.0%
AACATAGTCAAAAGTAGAAG+AGG - chr8_2:26242464-26242483 None:intergenic 30.0%
!! CTACTTTTGACTATGTTGAA+CGG + chr8_2:26242467-26242486 Msa1242160:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG + chr8_2:26242468-26242487 Msa1242160:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG - chr8_2:26242524-26242543 None:intergenic 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG - chr8_2:26242525-26242544 None:intergenic 30.0%
AGCCATATAAAGAAAAACTG+TGG + chr8_2:26242753-26242772 Msa1242160:intron 30.0%
AGATATTGATGAGCACTATA+AGG + chr8_2:26243035-26243054 Msa1242160:CDS 30.0%
ATCCTTGAAGTCATTGATAA+GGG + chr8_2:26243069-26243088 Msa1242160:CDS 30.0%
TTATAGAGCTATCTTTGCTT+TGG - chr8_2:26243217-26243236 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG + chr8_2:26243261-26243280 Msa1242160:three_prime_UTR 30.0%
CTTCTATGTGATGTTTGTAA+TGG + chr8_2:26243358-26243377 Msa1242160:three_prime_UTR 30.0%
TATGATGAACTCTTTCACAA+AGG - chr8_2:26242090-26242109 None:intergenic 30.0%
CATCATACAAAACTTCATGA+AGG + chr8_2:26242103-26242122 Msa1242160:CDS 30.0%
!! TGATGATTTGGTTATTGATC+AGG - chr8_2:26242204-26242223 None:intergenic 30.0%
TACATTCTACAAACCAAACA+TGG + chr8_2:26242373-26242392 Msa1242160:intron 30.0%
TGGGAAGAAAAAAAAATCAG+GGG - chr8_2:26242402-26242421 None:intergenic 30.0%
! TGAAGCATCTATCTTGAAAA+TGG - chr8_2:26242429-26242448 None:intergenic 30.0%
AACATAGTCAAAAGTAGAAG+AGG - chr8_2:26242464-26242483 None:intergenic 30.0%
!! CTACTTTTGACTATGTTGAA+CGG + chr8_2:26242467-26242486 Msa1242160:intron 30.0%
!! TACTTTTGACTATGTTGAAC+GGG + chr8_2:26242468-26242487 Msa1242160:intron 30.0%
! TTTTTGTCATAAGGTTCTCT+GGG - chr8_2:26242524-26242543 None:intergenic 30.0%
!!! TTTTTTGTCATAAGGTTCTC+TGG - chr8_2:26242525-26242544 None:intergenic 30.0%
AGCCATATAAAGAAAAACTG+TGG + chr8_2:26242753-26242772 Msa1242160:intron 30.0%
AGATATTGATGAGCACTATA+AGG + chr8_2:26243035-26243054 Msa1242160:CDS 30.0%
ATCCTTGAAGTCATTGATAA+GGG + chr8_2:26243069-26243088 Msa1242160:CDS 30.0%
TTATAGAGCTATCTTTGCTT+TGG - chr8_2:26243217-26243236 None:intergenic 30.0%
!! TAGTAATGGGTTATTGCATT+GGG + chr8_2:26243261-26243280 Msa1242160:three_prime_UTR 30.0%
CTTCTATGTGATGTTTGTAA+TGG + chr8_2:26243358-26243377 Msa1242160:three_prime_UTR 30.0%
! CTTCCCTTTCTTCTAAGAAA+TGG + chr8_2:26241970-26241989 Msa1242160:exon 35.0%
GCACCATTTCTTAGAAGAAA+GGG - chr8_2:26241976-26241995 None:intergenic 35.0%
AGCACCATTTCTTAGAAGAA+AGG - chr8_2:26241977-26241996 None:intergenic 35.0%
GAACAGATTGTAGAACTTGT+CGG - chr8_2:26242041-26242060 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG + chr8_2:26242113-26242132 Msa1242160:CDS 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG - chr8_2:26242523-26242542 None:intergenic 35.0%
ATCTGTGAATTATGATGGCA+CGG - chr8_2:26242935-26242954 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG - chr8_2:26242940-26242959 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG + chr8_2:26242939-26242958 Msa1242160:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG + chr8_2:26243012-26243031 Msa1242160:CDS 35.0%
CATCCTTGAAGTCATTGATA+AGG + chr8_2:26243068-26243087 Msa1242160:CDS 35.0%
AAGTATTCCATGTAGCCATT+TGG - chr8_2:26243159-26243178 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG + chr8_2:26243159-26243178 Msa1242160:CDS 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG + chr8_2:26243260-26243279 Msa1242160:three_prime_UTR 35.0%
! CTTCCCTTTCTTCTAAGAAA+TGG + chr8_2:26241970-26241989 Msa1242160:exon 35.0%
GCACCATTTCTTAGAAGAAA+GGG - chr8_2:26241976-26241995 None:intergenic 35.0%
AGCACCATTTCTTAGAAGAA+AGG - chr8_2:26241977-26241996 None:intergenic 35.0%
GAACAGATTGTAGAACTTGT+CGG - chr8_2:26242041-26242060 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG + chr8_2:26242113-26242132 Msa1242160:CDS 35.0%
! TTTTGTCATAAGGTTCTCTG+GGG - chr8_2:26242523-26242542 None:intergenic 35.0%
ATCTGTGAATTATGATGGCA+CGG - chr8_2:26242935-26242954 None:intergenic 35.0%
TTGCCATCTGTGAATTATGA+TGG - chr8_2:26242940-26242959 None:intergenic 35.0%
ATCATAATTCACAGATGGCA+AGG + chr8_2:26242939-26242958 Msa1242160:intron 35.0%
AACACTTATAAGCTCTTTGG+TGG + chr8_2:26243012-26243031 Msa1242160:CDS 35.0%
CATCCTTGAAGTCATTGATA+AGG + chr8_2:26243068-26243087 Msa1242160:CDS 35.0%
AAGTATTCCATGTAGCCATT+TGG - chr8_2:26243159-26243178 None:intergenic 35.0%
AATGGCTACATGGAATACTT+TGG + chr8_2:26243159-26243178 Msa1242160:CDS 35.0%
!! CTAGTAATGGGTTATTGCAT+TGG + chr8_2:26243260-26243279 Msa1242160:three_prime_UTR 35.0%
! TTCTAAGAAATGGTGCTCTC+TGG + chr8_2:26241980-26241999 Msa1242160:exon 40.0%
! AGATTGGCATCACACTGATT+CGG + chr8_2:26242129-26242148 Msa1242160:CDS 40.0%
!! ACACTGATTCGGTTAAACAC+TGG + chr8_2:26242140-26242159 Msa1242160:CDS 40.0%
AAATCAGGGGTAACCATGTT+TGG - chr8_2:26242389-26242408 None:intergenic 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG - chr8_2:26242516-26242535 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG - chr8_2:26242934-26242953 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG + chr8_2:26242934-26242953 Msa1242160:intron 40.0%
CACCCTTATCAATGACTTCA+AGG - chr8_2:26243074-26243093 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG + chr8_2:26243075-26243094 Msa1242160:CDS 40.0%
ATTCCATGTAGCCATTTGGA+GGG - chr8_2:26243155-26243174 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG - chr8_2:26243156-26243175 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG + chr8_2:26243265-26243284 Msa1242160:three_prime_UTR 40.0%
AGTGTGATGTCTGTACATGA+CGG + chr8_2:26243385-26243404 Msa1242160:three_prime_UTR 40.0%
! TTCTAAGAAATGGTGCTCTC+TGG + chr8_2:26241980-26241999 Msa1242160:exon 40.0%
! AGATTGGCATCACACTGATT+CGG + chr8_2:26242129-26242148 Msa1242160:CDS 40.0%
!! ACACTGATTCGGTTAAACAC+TGG + chr8_2:26242140-26242159 Msa1242160:CDS 40.0%
AAATCAGGGGTAACCATGTT+TGG - chr8_2:26242389-26242408 None:intergenic 40.0%
! ATAAGGTTCTCTGGGGAATA+TGG - chr8_2:26242516-26242535 None:intergenic 40.0%
TCTGTGAATTATGATGGCAC+GGG - chr8_2:26242934-26242953 None:intergenic 40.0%
GTGCCATCATAATTCACAGA+TGG + chr8_2:26242934-26242953 Msa1242160:intron 40.0%
CACCCTTATCAATGACTTCA+AGG - chr8_2:26243074-26243093 None:intergenic 40.0%
GAAGTCATTGATAAGGGTGA+TGG + chr8_2:26243075-26243094 Msa1242160:CDS 40.0%
ATTCCATGTAGCCATTTGGA+GGG - chr8_2:26243155-26243174 None:intergenic 40.0%
TATTCCATGTAGCCATTTGG+AGG - chr8_2:26243156-26243175 None:intergenic 40.0%
!! AATGGGTTATTGCATTGGGT+TGG + chr8_2:26243265-26243284 Msa1242160:three_prime_UTR 40.0%
AGTGTGATGTCTGTACATGA+CGG + chr8_2:26243385-26243404 Msa1242160:three_prime_UTR 40.0%
! GGTAAGCTCAGTACTGAAGT+TGG + chr8_2:26242001-26242020 Msa1242160:CDS 45.0%
AGATTGTAGAACTTGTCGGC+GGG - chr8_2:26242037-26242056 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG - chr8_2:26242038-26242057 None:intergenic 45.0%
AAACACTGGACTTACGTCGT+AGG + chr8_2:26242154-26242173 Msa1242160:CDS 45.0%
GAGGATATTGACCCTCCAAA+TGG + chr8_2:26243141-26243160 Msa1242160:CDS 45.0%
! GGTAAGCTCAGTACTGAAGT+TGG + chr8_2:26242001-26242020 Msa1242160:CDS 45.0%
AGATTGTAGAACTTGTCGGC+GGG - chr8_2:26242037-26242056 None:intergenic 45.0%
CAGATTGTAGAACTTGTCGG+CGG - chr8_2:26242038-26242057 None:intergenic 45.0%
AAACACTGGACTTACGTCGT+AGG + chr8_2:26242154-26242173 Msa1242160:CDS 45.0%
GAGGATATTGACCCTCCAAA+TGG + chr8_2:26243141-26243160 Msa1242160:CDS 45.0%
!!! TATTTTTGTATAAAAAAAAA+AGG - chr8_2:26242803-26242822 None:intergenic 5.0%
!!! TTTTATACAAAAATATTTAT+TGG + chr8_2:26242808-26242827 Msa1242160:intron 5.0%
!!! TATTTTTGTATAAAAAAAAA+AGG - chr8_2:26242803-26242822 None:intergenic 5.0%
!!! TTTTATACAAAAATATTTAT+TGG + chr8_2:26242808-26242827 Msa1242160:intron 5.0%
ATGGCACTGCTGCTGCTAAA+TGG + chr8_2:26243094-26243113 Msa1242160:CDS 50.0%
TGACCCTCCAAATGGCTACA+TGG + chr8_2:26243149-26243168 Msa1242160:CDS 50.0%
ATGGCACTGCTGCTGCTAAA+TGG + chr8_2:26243094-26243113 Msa1242160:CDS 50.0%
TGACCCTCCAAATGGCTACA+TGG + chr8_2:26243149-26243168 Msa1242160:CDS 50.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 26241940 26243465 26241940 ID=Msa1242160;Name=Msa1242160
chr8_2 mRNA 26241940 26243465 26241940 ID=Msa1242160-mRNA-1;Parent=Msa1242160;Name=Msa1242160-mRNA-1;_AED=0.03;_eAED=0.03;_QI=49|1|1|1|1|1|2|229|156
chr8_2 exon 26241940 26242175 26241940 ID=Msa1242160-mRNA-1:exon:9238;Parent=Msa1242160-mRNA-1
chr8_2 exon 26242953 26243465 26242953 ID=Msa1242160-mRNA-1:exon:9239;Parent=Msa1242160-mRNA-1
chr8_2 five_prime_UTR 26241940 26241988 26241940 ID=Msa1242160-mRNA-1:five_prime_utr;Parent=Msa1242160-mRNA-1
chr8_2 CDS 26241989 26242175 26241989 ID=Msa1242160-mRNA-1:cds;Parent=Msa1242160-mRNA-1
chr8_2 CDS 26242953 26243236 26242953 ID=Msa1242160-mRNA-1:cds;Parent=Msa1242160-mRNA-1
chr8_2 three_prime_UTR 26243237 26243465 26243237 ID=Msa1242160-mRNA-1:three_prime_utr;Parent=Msa1242160-mRNA-1
Gene Sequence

>Msa1242160

ATGGTGCTCTCTGGTAAGCTCAGTACTGAAGTTGGAATCAAAACACCCGCCGACAAGTTCTACAATCTGTTCATAACAGAACTTCATGAAGTGCAAAACCTTTGTGAAAGAGTTCATCATACAAAACTTCATGAAGGTGAAGATTGGCATCACACTGATTCGGTTAAACACTGGACTTACGTCGTAGATGGCAAGGTACATACATGTCACGAGAGAGTTGAAGAAGTTGATGAACTGAATAAAAAAAACACTTATAAGCTCTTTGGTGGAGATATTGATGAGCACTATAAGGTCTTTAAGCTCATCCTTGAAGTCATTGATAAGGGTGATGGCACTGCTGCTGCTAAATGGACAGTTGAATATGAAAAGATCAATGAGGATATTGACCCTCCAAATGGCTACATGGAATACTTTGGCAAAATCACTAGAGATGTTGATGCTCATCTTGCCAAAGCAAAGATAGCTCTATAA

Protein sequence

>Msa1242160

MVLSGKLSTEVGIKTPADKFYNLFITELHEVQNLCERVHHTKLHEGEDWHHTDSVKHWTYVVDGKVHTCHERVEEVDELNKKNTYKLFGGDIDEHYKVFKLILEVIDKGDGTAAAKWTVEYEKINEDIDPPNGYMEYFGKITRDVDAHLAKAKIAL*