AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197070 MtrunA17_Chr8g0365921 95.872 218 9 0 1 218 1 218 1.72e-158 437
Msa1197070 MtrunA17_Chr1g0193061 67.727 220 66 4 1 216 1 219 1.09e-105 303
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197070 AT1G23440.1 70.183 218 64 1 1 218 1 217 1.53e-113 323
Msa1197070 AT1G23440.3 70.183 218 64 1 1 218 1 217 1.53e-113 323
Msa1197070 AT1G56700.1 62.100 219 81 2 1 218 1 218 2.42e-99 288
Msa1197070 AT1G56700.2 62.100 219 81 2 1 218 1 218 2.42e-99 288
Msa1197070 AT1G56700.4 62.100 219 81 2 1 218 1 218 2.42e-99 288
Msa1197070 AT1G56700.3 60.526 190 73 2 30 218 1 189 2.57e-82 243
Msa1197070 AT1G23440.2 62.222 90 34 0 1 90 1 90 5.44e-35 120

Find 88 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATAAATAATTTGTTAT+TGG 0.144719 8_1:+47256469 Msa1197070:three_prime_UTR
ATAATCTCTGTAGGGTTTAT+TGG 0.189118 8_1:-47253262 None:intergenic
CTTAAGACCTTAACCATTCT+TGG 0.195032 8_1:-47256866 None:intergenic
AATATTGAAATCCTTGAAAA+AGG 0.209948 8_1:+47256007 Msa1197070:CDS
AAAATTACAATTCATGTAAC+TGG 0.219675 8_1:+47253217 Msa1197070:CDS
GAGATTTACATCCTCTCTTT+TGG 0.242916 8_1:+47256184 Msa1197070:CDS
GTCTTAAGATGATTAGCTTT+TGG 0.267152 8_1:+47256881 Msa1197070:three_prime_UTR
TTCCGCTGTTCTGATGAATT+AGG 0.270479 8_1:+47254627 Msa1197070:CDS
TCATGACATTCACATGTAAA+AGG 0.303547 8_1:-47256763 None:intergenic
AGAGTAATGCAAATGTTGTT+TGG 0.313563 8_1:+47253434 Msa1197070:CDS
AATTCATGAACATCGGTTCT+TGG 0.324677 8_1:+47256394 Msa1197070:three_prime_UTR
TTGGAAGGAAGTGGAATATA+AGG 0.336358 8_1:+47256728 Msa1197070:three_prime_UTR
TGACACGCATGTTGGCAAAA+AGG 0.351276 8_1:+47256512 Msa1197070:three_prime_UTR
TGTTTGACTCTTCTGCTGTT+TGG 0.356786 8_1:-47252670 None:intergenic
CCTCCATCCTCAAGGACTAT+TGG 0.368174 8_1:-47254808 None:intergenic
CTTCCAGTTGGTGTTACTCT+TGG 0.368291 8_1:+47253322 Msa1197070:CDS
AAGAATTCAGAATTCAGAAA+TGG 0.372313 8_1:+47253177 Msa1197070:exon
GACTGCCATGTCCTGTCATC+TGG 0.374311 8_1:+47256258 Msa1197070:three_prime_UTR
GAGTAATGCAAATGTTGTTT+GGG 0.392945 8_1:+47253435 Msa1197070:CDS
TACATGTGAATGTCATGATA+AGG 0.407513 8_1:+47256768 Msa1197070:three_prime_UTR
GTCGGTAAAGTTAGTATATG+TGG 0.417636 8_1:+47256799 Msa1197070:three_prime_UTR
ATGTGTATTACCACTCTCTT+CGG 0.421496 8_1:+47256084 Msa1197070:CDS
TTATCTTCCAAGAATGGTTA+AGG 0.421517 8_1:+47256859 Msa1197070:three_prime_UTR
ACTGTTGAGTCAACCTTGTA+TGG 0.423818 8_1:+47256626 Msa1197070:three_prime_UTR
ATTTATGCTTCAGCTTCACT+TGG 0.429836 8_1:+47254545 Msa1197070:intron
TTTATGCTTCAGCTTCACTT+GGG 0.439902 8_1:+47254546 Msa1197070:intron
CTTCCAAGAGTAACACCAAC+TGG 0.451339 8_1:-47253325 None:intergenic
TTTCTTCAATTGGAAGGAAG+TGG 0.454931 8_1:+47256719 Msa1197070:three_prime_UTR
TTGCTTAGTGTGCTTACGGT+TGG 0.459555 8_1:-47256536 None:intergenic
ACTGGGTTTAAGAAGTTTCA+AGG 0.460584 8_1:+47253235 Msa1197070:CDS
AAGGTTTGCCATTGAGCGGT+TGG 0.461153 8_1:+47254587 Msa1197070:CDS
TTATTAACAATAATCTCTGT+AGG 0.465678 8_1:-47253271 None:intergenic
CATGATAAGGTTATAGTTGT+CGG 0.468378 8_1:+47256781 Msa1197070:three_prime_UTR
TGGGCATTATCTTCCAAGAA+TGG 0.472776 8_1:+47256853 Msa1197070:three_prime_UTR
GATTTCAATATTGCATCAAC+GGG 0.475315 8_1:-47255996 None:intergenic
CTGTTTGGATAAAATGCCAC+TGG 0.477189 8_1:-47252655 None:intergenic
AGAATTCAGAATTCAGAAAT+GGG 0.477928 8_1:+47253178 Msa1197070:exon
TGCACTATTCTTGACGTGGC+TGG 0.492051 8_1:+47253349 Msa1197070:CDS
GGATTTCAATATTGCATCAA+CGG 0.495159 8_1:-47255997 None:intergenic
AAGAAGAAAGCAATGCTTTG+CGG 0.495683 8_1:-47252699 None:intergenic
AGGGATTATGTTGAAAAGAA+AGG 0.499009 8_1:+47253298 Msa1197070:CDS
CTCGTGTGGTTAGTGACAGC+GGG 0.506827 8_1:-47252595 None:intergenic
GGAATCTGTTGTGTCGAAAA+CGG 0.508223 8_1:+47253405 Msa1197070:CDS
TTATGCTTCAGCTTCACTTG+GGG 0.520510 8_1:+47254547 Msa1197070:intron
TTTCGACACAACAGATTCCA+TGG 0.522218 8_1:-47253401 None:intergenic
GTTTGCCATTGAGCGGTTGG+CGG 0.523269 8_1:+47254590 Msa1197070:CDS
TCTTCGGTTCGCAGAACAGA+AGG 0.529048 8_1:+47256100 Msa1197070:CDS
AATTCAGAAATGGGATCTGA+AGG 0.532059 8_1:+47253187 Msa1197070:exon
ATTCTTGACGTGGCTGGTGA+TGG 0.533255 8_1:+47253355 Msa1197070:CDS
TACATACACAACCAGATGAC+AGG 0.536660 8_1:-47256269 None:intergenic
CTGCAAGGTTTGCCATTGAG+CGG 0.540890 8_1:+47254583 Msa1197070:CDS
AAACTGTACTCAACCATACA+AGG 0.543154 8_1:-47256639 None:intergenic
AGATTATTGTTAATAATCTG+AGG 0.547702 8_1:+47253278 Msa1197070:CDS
TATTAACAATAATCTCTGTA+GGG 0.553359 8_1:-47253270 None:intergenic
AAATTACAATTCATGTAACT+GGG 0.560230 8_1:+47253218 Msa1197070:CDS
GAGAAATTCCTCCATCCTCA+AGG 0.563765 8_1:-47254816 None:intergenic
ATTCACCGCCAACCGCTCAA+TGG 0.566870 8_1:-47254595 None:intergenic
TATGCTTCAGCTTCACTTGG+GGG 0.574889 8_1:+47254548 Msa1197070:intron
CCACAGTCGTGTTTCTCGTG+TGG 0.577249 8_1:-47252609 None:intergenic
GTCACACTTCGTGAATTCCC+AGG 0.577319 8_1:+47252792 Msa1197070:five_prime_UTR
TCCTCAGCTTTATCAGACCA+TGG 0.578488 8_1:+47253384 Msa1197070:CDS
GATTATTGTTAATAATCTGA+GGG 0.580790 8_1:+47253279 Msa1197070:CDS
GAAAAGAAAGGTCTTCCAGT+TGG 0.590107 8_1:+47253310 Msa1197070:CDS
GTACCAATAGTCCTTGAGGA+TGG 0.605270 8_1:+47254805 Msa1197070:CDS
GATTGCACAGATATATATGC+TGG 0.605384 8_1:+47256416 Msa1197070:three_prime_UTR
TTATTAACATGCAGAAGCAA+TGG 0.607143 8_1:-47256210 None:intergenic
GCAAGTACCAATAGTCCTTG+AGG 0.613468 8_1:+47254801 Msa1197070:intron
TCTCGTGTGGTTAGTGACAG+CGG 0.615212 8_1:-47252596 None:intergenic
CCAATAGTCCTTGAGGATGG+AGG 0.618477 8_1:+47254808 Msa1197070:CDS
AGGAATTTCTCGAACAAGAG+AGG 0.621029 8_1:+47254828 Msa1197070:CDS
GATGTATAATTCATGAACAT+CGG 0.626078 8_1:+47256387 Msa1197070:three_prime_UTR
GGGTGAACAGTGGAGCTGCA+AGG 0.626140 8_1:+47254568 Msa1197070:CDS
ATTCAGAAATGGGATCTGAA+GGG 0.630200 8_1:+47253188 Msa1197070:exon
CTTCGGTTCGCAGAACAGAA+GGG 0.630794 8_1:+47256101 Msa1197070:CDS
GCTGTTCTGATGAATTAGGA+TGG 0.630988 8_1:+47254631 Msa1197070:CDS
CACAACCAGATGACAGGACA+TGG 0.632247 8_1:-47256263 None:intergenic
AATTGATTGAATTGTATGCA+AGG 0.637455 8_1:+47256236 Msa1197070:three_prime_UTR
AGCAATGGCCTCCAAAAGAG+AGG 0.638029 8_1:-47256195 None:intergenic
AAGTTGCACTATTCTTGACG+TGG 0.643245 8_1:+47253345 Msa1197070:CDS
TCCATGGTCTGATAAAGCTG+AGG 0.663058 8_1:-47253385 None:intergenic
TGTTTGGATAAAATGCCACT+GGG 0.663298 8_1:-47252654 None:intergenic
GGCTATATTTGTGTATGACT+AGG 0.670813 8_1:+47256680 Msa1197070:three_prime_UTR
ATATTTGTGTATGACTAGGA+TGG 0.674241 8_1:+47256684 Msa1197070:three_prime_UTR
ATCCTAATTCATCAGAACAG+CGG 0.674516 8_1:-47254629 None:intergenic
GTGATGATATCAGTCGACGC+AGG 0.691901 8_1:+47256044 Msa1197070:CDS
GTTCTGCGAACCGAAGAGAG+TGG 0.713903 8_1:-47256094 None:intergenic
CCACACGAGAAACACGACTG+TGG 0.747428 8_1:+47252609 Msa1197070:five_prime_UTR
GTTTGGATAAAATGCCACTG+GGG 0.838992 8_1:-47252653 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAATACTACAAAA+AGG - chr8_1:47252732-47252751 None:intergenic 10.0%
!! AATGAAATTAATTAAACATA+AGG - chr8_1:47252912-47252931 None:intergenic 10.0%
!!! ATTTATTACTACAATTTTAA+AGG - chr8_1:47253851-47253870 None:intergenic 10.0%
!!! TTATTTTTTATAGATGAAAT+TGG + chr8_1:47254684-47254703 Msa1197070:intron 10.0%
!!! AAAAAACATTTTTATTTATC+CGG + chr8_1:47255262-47255281 Msa1197070:intron 10.0%
!!! AGAAATAAATAATTTGTTAT+TGG + chr8_1:47256469-47256488 Msa1197070:three_prime_UTR 10.0%
!! AAAAAAAAAATTAGTATATG+TGG + chr8_1:47256833-47256852 Msa1197070:three_prime_UTR 10.0%
!! AAAAAAAAATTAGTATATGT+GGG + chr8_1:47256834-47256853 Msa1197070:three_prime_UTR 10.0%
!! TAATTTAGTGTGATAATTAT+TGG + chr8_1:47253100-47253119 Msa1197070:intron 15.0%
!! TAAAAAGTTTAAACGAAAAT+TGG + chr8_1:47253145-47253164 Msa1197070:five_prime_UTR 15.0%
!! AAAAAGTTTAAACGAAAATT+GGG + chr8_1:47253146-47253165 Msa1197070:five_prime_UTR 15.0%
!!! TTTATTTTGTCTTTTGTTAT+AGG + chr8_1:47253601-47253620 Msa1197070:intron 15.0%
!! AATAAATAGCATATAAGTAT+AGG + chr8_1:47253864-47253883 Msa1197070:intron 15.0%
!! ATTGAATTGTATTAGAAATT+TGG + chr8_1:47253983-47254002 Msa1197070:intron 15.0%
!!! TTTCATTTTGTTTAATGTAT+AGG + chr8_1:47254944-47254963 Msa1197070:intron 15.0%
!!! TTCATTTTGTTTAATGTATA+GGG + chr8_1:47254945-47254964 Msa1197070:intron 15.0%
!!! AATTATTTATTTCTTTTGCT+TGG - chr8_1:47256463-47256482 None:intergenic 15.0%
!!! TTTTATACAAAACATTTGAA+TGG + chr8_1:47256659-47256678 Msa1197070:three_prime_UTR 15.0%
!!! TGTATTTTATTTTCTTCAAT+TGG + chr8_1:47256709-47256728 Msa1197070:three_prime_UTR 15.0%
!! AATTGATCAATTTAGTGAAA+AGG + chr8_1:47252990-47253009 Msa1197070:intron 20.0%
!! ATTGATCAATTTAGTGAAAA+GGG + chr8_1:47252991-47253010 Msa1197070:intron 20.0%
!!! ACATGAATTGTAATTTTCTT+TGG - chr8_1:47253214-47253233 None:intergenic 20.0%
!! AAAATTACAATTCATGTAAC+TGG + chr8_1:47253217-47253236 Msa1197070:CDS 20.0%
!! AAATTACAATTCATGTAACT+GGG + chr8_1:47253218-47253237 Msa1197070:CDS 20.0%
!! TATTAACAATAATCTCTGTA+GGG - chr8_1:47253273-47253292 None:intergenic 20.0%
!! TTATTAACAATAATCTCTGT+AGG - chr8_1:47253274-47253293 None:intergenic 20.0%
!! AGATTATTGTTAATAATCTG+AGG + chr8_1:47253278-47253297 Msa1197070:CDS 20.0%
!! GATTATTGTTAATAATCTGA+GGG + chr8_1:47253279-47253298 Msa1197070:CDS 20.0%
!! TAAAAATCTCATAATTAACG+AGG - chr8_1:47254200-47254219 None:intergenic 20.0%
!!! TTATGAGATTTTTATAACTC+TGG + chr8_1:47254206-47254225 Msa1197070:intron 20.0%
!!! TATGAGATTTTTATAACTCT+GGG + chr8_1:47254207-47254226 Msa1197070:intron 20.0%
!! GATTATATAATCATATTTCC+TGG + chr8_1:47254493-47254512 Msa1197070:intron 20.0%
!! TTCTATTATCAAAATAATCC+AGG - chr8_1:47254514-47254533 None:intergenic 20.0%
!! ACGTTAATGTTGTATTAAAT+TGG + chr8_1:47255076-47255095 Msa1197070:intron 20.0%
!! AACGTTAATGTTGTATTAAT+TGG + chr8_1:47255124-47255143 Msa1197070:intron 20.0%
!! CTTATTAAGGATTCAAAAAA+TGG + chr8_1:47255558-47255577 Msa1197070:intron 20.0%
!!! TACGGTAGAAATTTTATATT+GGG - chr8_1:47255651-47255670 None:intergenic 20.0%
!!! TTACGGTAGAAATTTTATAT+TGG - chr8_1:47255652-47255671 None:intergenic 20.0%
!! AATATTGAAATCCTTGAAAA+AGG + chr8_1:47256007-47256026 Msa1197070:CDS 20.0%
!! ATATTGAAATCCTTGAAAAA+GGG + chr8_1:47256008-47256027 Msa1197070:CDS 20.0%
!!! GTTCTTTGATTTATTTTCTT+TGG + chr8_1:47256351-47256370 Msa1197070:three_prime_UTR 20.0%
!!! TTTTATTTTCTTCAATTGGA+AGG + chr8_1:47256713-47256732 Msa1197070:three_prime_UTR 20.0%
! AAGAATTCAGAATTCAGAAA+TGG + chr8_1:47253177-47253196 Msa1197070:exon 25.0%
! AGAATTCAGAATTCAGAAAT+GGG + chr8_1:47253178-47253197 Msa1197070:exon 25.0%
! GTTGAAAACAGCTTATAAAT+TGG - chr8_1:47253529-47253548 None:intergenic 25.0%
! ATAGCATAAACAATTGTCAT+AGG - chr8_1:47253783-47253802 None:intergenic 25.0%
! ATGTTGTAAAATAGCAGTTA+TGG - chr8_1:47254411-47254430 None:intergenic 25.0%
!!! ACTGCTATTTTACAACATTA+TGG + chr8_1:47254413-47254432 Msa1197070:intron 25.0%
!!! CTGCTATTTTACAACATTAT+GGG + chr8_1:47254414-47254433 Msa1197070:intron 25.0%
!!! TGTATTAAATTGGTTTTGTG+AGG + chr8_1:47255086-47255105 Msa1197070:intron 25.0%
! AATGTTGTATTAATTGGTTG+AGG + chr8_1:47255130-47255149 Msa1197070:intron 25.0%
! ATGTTGTATTAATTGGTTGA+GGG + chr8_1:47255131-47255150 Msa1197070:intron 25.0%
! AGAGAAAGAACAAATCAATA+AGG + chr8_1:47255232-47255251 Msa1197070:intron 25.0%
!!! NNNNNNNNNGAAAGGTACTG+CGG - chr8_1:47255412-47255431 None:intergenic 25.0%
! GGCACTTGATAAAAAATTTA+CGG - chr8_1:47255669-47255688 None:intergenic 25.0%
! TTAAAGATTCAAATGACTCA+TGG - chr8_1:47255831-47255850 None:intergenic 25.0%
! CATTTGAATCTTTAAATCGA+TGG + chr8_1:47255836-47255855 Msa1197070:intron 25.0%
! ACAAAAAATAGTAGCAAGTT+AGG - chr8_1:47255962-47255981 None:intergenic 25.0%
!!! ATAATCTTTTCCCTTTTTCA+AGG - chr8_1:47256021-47256040 None:intergenic 25.0%
!!! TCATCGATTTTCGAAAATAA+GGG - chr8_1:47256152-47256171 None:intergenic 25.0%
!!! TTCATCGATTTTCGAAAATA+AGG - chr8_1:47256153-47256172 None:intergenic 25.0%
! AATTGATTGAATTGTATGCA+AGG + chr8_1:47256236-47256255 Msa1197070:three_prime_UTR 25.0%
! GATGTATAATTCATGAACAT+CGG + chr8_1:47256387-47256406 Msa1197070:three_prime_UTR 25.0%
CCATGAAAAAGAGAGAAAAA+TGG - chr8_1:47252820-47252839 None:intergenic 30.0%
!! CCATTTTTCTCTCTTTTTCA+TGG + chr8_1:47252817-47252836 Msa1197070:intron 30.0%
AAGAGACACAGAAACATAAT+TGG - chr8_1:47252866-47252885 None:intergenic 30.0%
TAGCAGAAATTAAGATTGTG+TGG - chr8_1:47252889-47252908 None:intergenic 30.0%
ATAATCTCTGTAGGGTTTAT+TGG - chr8_1:47253265-47253284 None:intergenic 30.0%
AGGGATTATGTTGAAAAGAA+AGG + chr8_1:47253298-47253317 Msa1197070:CDS 30.0%
AGAGTAATGCAAATGTTGTT+TGG + chr8_1:47253434-47253453 Msa1197070:CDS 30.0%
! GAGTAATGCAAATGTTGTTT+GGG + chr8_1:47253435-47253454 Msa1197070:CDS 30.0%
TCTCTAGTGTCAATTTAGAT+GGG - chr8_1:47253681-47253700 None:intergenic 30.0%
GTACTATCGTATAATCTGTT+TGG - chr8_1:47253829-47253848 None:intergenic 30.0%
! TATCATTTTCACCACATTTC+TGG + chr8_1:47253951-47253970 Msa1197070:intron 30.0%
!! ATTTGTTTCTACCAGAAATG+TGG - chr8_1:47253965-47253984 None:intergenic 30.0%
TGTCAATTGCATAACAGTAA+TGG - chr8_1:47254122-47254141 None:intergenic 30.0%
!! ATAACGAGAGTACTTAGAAA+CGG - chr8_1:47254172-47254191 None:intergenic 30.0%
TACAAAATGTTGTCAAACAG+TGG - chr8_1:47254320-47254339 None:intergenic 30.0%
GAAATTGGAAAAAAGCTACA+AGG + chr8_1:47254699-47254718 Msa1197070:intron 30.0%
AACTCAGATAATGCAAAACA+TGG - chr8_1:47254749-47254768 None:intergenic 30.0%
! TACTTGCTGAAAAGGAAAAT+TGG - chr8_1:47254788-47254807 None:intergenic 30.0%
! CATGTTGGATTGCATTTTAT+AGG + chr8_1:47254894-47254913 Msa1197070:intron 30.0%
ATAAAGCTTACAAAATCCTC+AGG + chr8_1:47255016-47255035 Msa1197070:intron 30.0%
AAAATCCTCAGGTCATAAAT+TGG + chr8_1:47255027-47255046 Msa1197070:intron 30.0%
AACCTTGGTTCAAAAGTAAA+AGG + chr8_1:47255321-47255340 Msa1197070:intron 30.0%
!! ATCCTTTTACTTTTGAACCA+AGG - chr8_1:47255326-47255345 None:intergenic 30.0%
!!! ATTTTTTATCAAGTGCCCTT+AGG + chr8_1:47255672-47255691 Msa1197070:intron 30.0%
!!! TTTTTTATCAAGTGCCCTTA+GGG + chr8_1:47255673-47255692 Msa1197070:intron 30.0%
GATTTCAATATTGCATCAAC+GGG - chr8_1:47255999-47256018 None:intergenic 30.0%
GGATTTCAATATTGCATCAA+CGG - chr8_1:47256000-47256019 None:intergenic 30.0%
TTATTAACATGCAGAAGCAA+TGG - chr8_1:47256213-47256232 None:intergenic 30.0%
! ATTTTTGCTTAGTGTGCTTA+CGG - chr8_1:47256543-47256562 None:intergenic 30.0%
ATATTTGTGTATGACTAGGA+TGG + chr8_1:47256684-47256703 Msa1197070:three_prime_UTR 30.0%
TCATGACATTCACATGTAAA+AGG - chr8_1:47256766-47256785 None:intergenic 30.0%
TACATGTGAATGTCATGATA+AGG + chr8_1:47256768-47256787 Msa1197070:three_prime_UTR 30.0%
CATGATAAGGTTATAGTTGT+CGG + chr8_1:47256781-47256800 Msa1197070:three_prime_UTR 30.0%
TTATCTTCCAAGAATGGTTA+AGG + chr8_1:47256859-47256878 Msa1197070:three_prime_UTR 30.0%
!!! GTCTTAAGATGATTAGCTTT+TGG + chr8_1:47256881-47256900 Msa1197070:three_prime_UTR 30.0%
! GTAATATTTTCATACCCCAG+TGG + chr8_1:47252639-47252658 Msa1197070:five_prime_UTR 35.0%
TGTTTGGATAAAATGCCACT+GGG - chr8_1:47252657-47252676 None:intergenic 35.0%
AAGAAGAAAGCAATGCTTTG+CGG - chr8_1:47252702-47252721 None:intergenic 35.0%
! CGAAGTGTGACAATTTTGTT+TGG - chr8_1:47252783-47252802 None:intergenic 35.0%
AAGAGAGAAAAATGGTACCT+GGG - chr8_1:47252812-47252831 None:intergenic 35.0%
AAAGAGAGAAAAATGGTACC+TGG - chr8_1:47252813-47252832 None:intergenic 35.0%
AATTCAGAAATGGGATCTGA+AGG + chr8_1:47253187-47253206 Msa1197070:exon 35.0%
ATTCAGAAATGGGATCTGAA+GGG + chr8_1:47253188-47253207 Msa1197070:exon 35.0%
ACTGGGTTTAAGAAGTTTCA+AGG + chr8_1:47253235-47253254 Msa1197070:CDS 35.0%
CTCTCTAGTGTCAATTTAGA+TGG - chr8_1:47253682-47253701 None:intergenic 35.0%
TGCTAGACATTGTAACACAT+CGG + chr8_1:47254064-47254083 Msa1197070:intron 35.0%
ACTATAGGACTGAAGTATAG+CGG - chr8_1:47254287-47254306 None:intergenic 35.0%
CACGTATCGCTAAACAATAA+TGG + chr8_1:47254346-47254365 Msa1197070:intron 35.0%
GTTATAGGGCTATAGTATAG+TGG - chr8_1:47254384-47254403 None:intergenic 35.0%
CATTATGGGTAACCAATGAT+CGG + chr8_1:47254428-47254447 Msa1197070:intron 35.0%
ACTCAAAATCTACCGATCAT+TGG - chr8_1:47254443-47254462 None:intergenic 35.0%
GAAGCTGAAGCATAAATTCA+AGG - chr8_1:47254542-47254561 None:intergenic 35.0%
ATTTATGCTTCAGCTTCACT+TGG + chr8_1:47254545-47254564 Msa1197070:intron 35.0%
TTTATGCTTCAGCTTCACTT+GGG + chr8_1:47254546-47254565 Msa1197070:intron 35.0%
ATCCTAATTCATCAGAACAG+CGG - chr8_1:47254632-47254651 None:intergenic 35.0%
! AGCTACAAGGTTTTCTTGTA+TGG + chr8_1:47254712-47254731 Msa1197070:intron 35.0%
! ACTATTGGTACTTGCTGAAA+AGG - chr8_1:47254796-47254815 None:intergenic 35.0%
TCCACGTTAGTCAGAAATAA+AGG + chr8_1:47254980-47254999 Msa1197070:intron 35.0%
CAAAACCAATTTATGACCTG+AGG - chr8_1:47255035-47255054 None:intergenic 35.0%
!!! GGTCATAAATTGGTTTTGTG+AGG + chr8_1:47255037-47255056 Msa1197070:intron 35.0%
TATCCGGTTATAGACTTGTA+TGG + chr8_1:47255278-47255297 Msa1197070:intron 35.0%
CAACCATACAAGTCTATAAC+CGG - chr8_1:47255284-47255303 None:intergenic 35.0%
!! TTACTTTTGAACCAAGGTTG+CGG - chr8_1:47255320-47255339 None:intergenic 35.0%
ATCCTTAATAAGTGCCCTAA+AGG - chr8_1:47255550-47255569 None:intergenic 35.0%
CCTAAGCTAGAACTATAGAA+GGG - chr8_1:47255714-47255733 None:intergenic 35.0%
!! CCTTCTATAGTTCTAGCTTA+GGG + chr8_1:47255712-47255731 Msa1197070:intron 35.0%
!! ACGACTCGGTCTTAATATTA+TGG + chr8_1:47255745-47255764 Msa1197070:intron 35.0%
CTCATGGTTTACTGATAAGT+GGG - chr8_1:47255815-47255834 None:intergenic 35.0%
ACTCATGGTTTACTGATAAG+TGG - chr8_1:47255816-47255835 None:intergenic 35.0%
AAACCATACTGAACTTGCAA+AGG + chr8_1:47255870-47255889 Msa1197070:intron 35.0%
ATTCCTTTGCAAGTTCAGTA+TGG - chr8_1:47255876-47255895 None:intergenic 35.0%
ATGTGTATTACCACTCTCTT+CGG + chr8_1:47256084-47256103 Msa1197070:CDS 35.0%
! GAGATTTACATCCTCTCTTT+TGG + chr8_1:47256184-47256203 Msa1197070:CDS 35.0%
! ATTTACATCCTCTCTTTTGG+AGG + chr8_1:47256187-47256206 Msa1197070:CDS 35.0%
!! AATTCATGAACATCGGTTCT+TGG + chr8_1:47256394-47256413 Msa1197070:three_prime_UTR 35.0%
GATTGCACAGATATATATGC+TGG + chr8_1:47256416-47256435 Msa1197070:three_prime_UTR 35.0%
AAACTGTACTCAACCATACA+AGG - chr8_1:47256642-47256661 None:intergenic 35.0%
GGCTATATTTGTGTATGACT+AGG + chr8_1:47256680-47256699 Msa1197070:three_prime_UTR 35.0%
TTTCTTCAATTGGAAGGAAG+TGG + chr8_1:47256719-47256738 Msa1197070:three_prime_UTR 35.0%
TTGGAAGGAAGTGGAATATA+AGG + chr8_1:47256728-47256747 Msa1197070:three_prime_UTR 35.0%
GTCGGTAAAGTTAGTATATG+TGG + chr8_1:47256799-47256818 Msa1197070:three_prime_UTR 35.0%
CTTAAGACCTTAACCATTCT+TGG - chr8_1:47256869-47256888 None:intergenic 35.0%
GTTTGGATAAAATGCCACTG+GGG - chr8_1:47252656-47252675 None:intergenic 40.0%
CTGTTTGGATAAAATGCCAC+TGG - chr8_1:47252658-47252677 None:intergenic 40.0%
TGTTTGACTCTTCTGCTGTT+TGG - chr8_1:47252673-47252692 None:intergenic 40.0%
GAAAAGAAAGGTCTTCCAGT+TGG + chr8_1:47253310-47253329 Msa1197070:CDS 40.0%
AAGTTGCACTATTCTTGACG+TGG + chr8_1:47253345-47253364 Msa1197070:CDS 40.0%
TTTCGACACAACAGATTCCA+TGG - chr8_1:47253404-47253423 None:intergenic 40.0%
GGAATCTGTTGTGTCGAAAA+CGG + chr8_1:47253405-47253424 Msa1197070:CDS 40.0%
GAATCAAACCTTAGACCTCA+AGG + chr8_1:47253701-47253720 Msa1197070:intron 40.0%
CAATGTCTAGCAGCAATTTC+AGG - chr8_1:47254056-47254075 None:intergenic 40.0%
!! AGTGGCTATAGAAGCACTAT+AGG - chr8_1:47254302-47254321 None:intergenic 40.0%
TTATGCTTCAGCTTCACTTG+GGG + chr8_1:47254547-47254566 Msa1197070:intron 40.0%
TTCCGCTGTTCTGATGAATT+AGG + chr8_1:47254627-47254646 Msa1197070:CDS 40.0%
GCTGTTCTGATGAATTAGGA+TGG + chr8_1:47254631-47254650 Msa1197070:CDS 40.0%
GCATGATCATAACTCACTTG+TGG - chr8_1:47254660-47254679 None:intergenic 40.0%
AGGAATTTCTCGAACAAGAG+AGG + chr8_1:47254828-47254847 Msa1197070:CDS 40.0%
!! GCCTTTATTTCTGACTAACG+TGG - chr8_1:47254984-47255003 None:intergenic 40.0%
!!! TGGTTTTGTGAGGTTGAGAT+TGG + chr8_1:47255047-47255066 Msa1197070:intron 40.0%
!!! TGGTTTTGTGAGGTTGAGAT+TGG + chr8_1:47255047-47255066 Msa1197070:intron 40.0%
CGGTTATAGACTTGTATGGT+TGG + chr8_1:47255282-47255301 Msa1197070:intron 40.0%
TCTTGCTAACAAGTGCCTTT+AGG + chr8_1:47255532-47255551 Msa1197070:intron 40.0%
CTTGCTAACAAGTGCCTTTA+GGG + chr8_1:47255533-47255552 Msa1197070:intron 40.0%
!! TGCCTTTAGGGCACTTATTA+AGG + chr8_1:47255545-47255564 Msa1197070:intron 40.0%
AATGCTAACAAGTGCCCTAA+GGG - chr8_1:47255690-47255709 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTA+AGG - chr8_1:47255691-47255710 None:intergenic 40.0%
!! CCCTTCTATAGTTCTAGCTT+AGG + chr8_1:47255711-47255730 Msa1197070:intron 40.0%
CCCTAAGCTAGAACTATAGA+AGG - chr8_1:47255715-47255734 None:intergenic 40.0%
!! CTATAGTTCTAGCTTAGGGT+TGG + chr8_1:47255716-47255735 Msa1197070:intron 40.0%
TACATACACAACCAGATGAC+AGG - chr8_1:47256272-47256291 None:intergenic 40.0%
AGCAAAAATGACACGCATGT+TGG + chr8_1:47256504-47256523 Msa1197070:three_prime_UTR 40.0%
AGCAAAAATGTCACACATGC+TGG + chr8_1:47256554-47256573 Msa1197070:three_prime_UTR 40.0%
ACTGTTGAGTCAACCTTGTA+TGG + chr8_1:47256626-47256645 Msa1197070:three_prime_UTR 40.0%
TGGGCATTATCTTCCAAGAA+TGG + chr8_1:47256853-47256872 Msa1197070:three_prime_UTR 40.0%
!! CTTCCAGTTGGTGTTACTCT+TGG + chr8_1:47253322-47253341 Msa1197070:CDS 45.0%
CTTCCAAGAGTAACACCAAC+TGG - chr8_1:47253328-47253347 None:intergenic 45.0%
! TCCTCAGCTTTATCAGACCA+TGG + chr8_1:47253384-47253403 Msa1197070:CDS 45.0%
TCCATGGTCTGATAAAGCTG+AGG - chr8_1:47253388-47253407 None:intergenic 45.0%
TCAAACCTTAGACCTCAAGG+AGG + chr8_1:47253704-47253723 Msa1197070:intron 45.0%
GAAACCAGTGCTGTCAATTG+CGG + chr8_1:47254229-47254248 Msa1197070:intron 45.0%
GCAGTTATGGCAGCGTTATA+GGG - chr8_1:47254398-47254417 None:intergenic 45.0%
AGCAGTTATGGCAGCGTTAT+AGG - chr8_1:47254399-47254418 None:intergenic 45.0%
TATGCTTCAGCTTCACTTGG+GGG + chr8_1:47254548-47254567 Msa1197070:intron 45.0%
GCAAGTACCAATAGTCCTTG+AGG + chr8_1:47254801-47254820 Msa1197070:intron 45.0%
GTACCAATAGTCCTTGAGGA+TGG + chr8_1:47254805-47254824 Msa1197070:CDS 45.0%
GAGAAATTCCTCCATCCTCA+AGG - chr8_1:47254819-47254838 None:intergenic 45.0%
TCGCGTGATCTGTAACATGT+TGG + chr8_1:47254879-47254898 Msa1197070:intron 45.0%
! GTTTGTTAGAACCGCAACCT+TGG + chr8_1:47255306-47255325 Msa1197070:intron 45.0%
GTAGGAGACATAGGCACAAT+TGG - chr8_1:47255379-47255398 None:intergenic 45.0%
ATAAGTGGGTAGTTCGTTCG+AGG - chr8_1:47255801-47255820 None:intergenic 45.0%
TGACACGCATGTTGGCAAAA+AGG + chr8_1:47256512-47256531 Msa1197070:three_prime_UTR 45.0%
TTGCTTAGTGTGCTTACGGT+TGG - chr8_1:47256539-47256558 None:intergenic 45.0%
TCTCGTGTGGTTAGTGACAG+CGG - chr8_1:47252599-47252618 None:intergenic 50.0%
GTCACACTTCGTGAATTCCC+AGG + chr8_1:47252792-47252811 Msa1197070:five_prime_UTR 50.0%
TGCACTATTCTTGACGTGGC+TGG + chr8_1:47253349-47253368 Msa1197070:CDS 50.0%
ATTCTTGACGTGGCTGGTGA+TGG + chr8_1:47253355-47253374 Msa1197070:CDS 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG - chr8_1:47253738-47253757 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG - chr8_1:47253739-47253758 None:intergenic 50.0%
GATCCCAAGCCAATACCACT+AGG + chr8_1:47253739-47253758 Msa1197070:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG - chr8_1:47253745-47253764 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG - chr8_1:47253746-47253765 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - chr8_1:47253751-47253770 None:intergenic 50.0%
TGTCATAGGCCAACCCACTT+GGG - chr8_1:47253769-47253788 None:intergenic 50.0%
TTGTCATAGGCCAACCCACT+TGG - chr8_1:47253770-47253789 None:intergenic 50.0%
CAATCCGCAATTGACAGCAC+TGG - chr8_1:47254236-47254255 None:intergenic 50.0%
CTGCAAGGTTTGCCATTGAG+CGG + chr8_1:47254583-47254602 Msa1197070:CDS 50.0%
AAGGTTTGCCATTGAGCGGT+TGG + chr8_1:47254587-47254606 Msa1197070:CDS 50.0%
CCTCCATCCTCAAGGACTAT+TGG - chr8_1:47254811-47254830 None:intergenic 50.0%
CCAATAGTCCTTGAGGATGG+AGG + chr8_1:47254808-47254827 Msa1197070:CDS 50.0%
CTATGTCTCCTACTGCAGAG+CGG + chr8_1:47255386-47255405 Msa1197070:intron 50.0%
! AGGGTTGGCATAGTACGACT+CGG + chr8_1:47255731-47255750 Msa1197070:intron 50.0%
! TCAGGGGTAATGGTGCAAAC+TGG - chr8_1:47255772-47255791 None:intergenic 50.0%
TTCGTTCGAGGTACGGTTCA+GGG - chr8_1:47255789-47255808 None:intergenic 50.0%
TGGGTAGTTCGTTCGAGGTA+CGG - chr8_1:47255796-47255815 None:intergenic 50.0%
GTGATGATATCAGTCGACGC+AGG + chr8_1:47256044-47256063 Msa1197070:CDS 50.0%
! TCTTCGGTTCGCAGAACAGA+AGG + chr8_1:47256100-47256119 Msa1197070:CDS 50.0%
! CTTCGGTTCGCAGAACAGAA+GGG + chr8_1:47256101-47256120 Msa1197070:CDS 50.0%
AGCAATGGCCTCCAAAAGAG+AGG - chr8_1:47256198-47256217 None:intergenic 50.0%
CACAACCAGATGACAGGACA+TGG - chr8_1:47256266-47256285 None:intergenic 50.0%
CTCGTGTGGTTAGTGACAGC+GGG - chr8_1:47252598-47252617 None:intergenic 55.0%
CCACAGTCGTGTTTCTCGTG+TGG - chr8_1:47252612-47252631 None:intergenic 55.0%
CCACACGAGAAACACGACTG+TGG + chr8_1:47252609-47252628 Msa1197070:five_prime_UTR 55.0%
GTGCTCCTCCTTGAGGTCTA+AGG - chr8_1:47253712-47253731 None:intergenic 55.0%
TACCACTAGGCCAACCCAAG+TGG + chr8_1:47253752-47253771 Msa1197070:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG + chr8_1:47253753-47253772 Msa1197070:intron 55.0%
ATAGGCCAACCCACTTGGGT+TGG - chr8_1:47253765-47253784 None:intergenic 55.0%
CTTCACTTGGGGGTGAACAG+TGG + chr8_1:47254558-47254577 Msa1197070:CDS 55.0%
GTTTGCCATTGAGCGGTTGG+CGG + chr8_1:47254590-47254609 Msa1197070:CDS 55.0%
ATTCACCGCCAACCGCTCAA+TGG - chr8_1:47254598-47254617 None:intergenic 55.0%
CGCTCTGCAGTAGGAGACAT+AGG - chr8_1:47255388-47255407 None:intergenic 55.0%
GAGGTACGGTTCAGGGGTAA+TGG - chr8_1:47255782-47255801 None:intergenic 55.0%
TCGTTCGAGGTACGGTTCAG+GGG - chr8_1:47255788-47255807 None:intergenic 55.0%
GTTCGTTCGAGGTACGGTTC+AGG - chr8_1:47255790-47255809 None:intergenic 55.0%
GTTCTGCGAACCGAAGAGAG+TGG - chr8_1:47256097-47256116 None:intergenic 55.0%
GACTGCCATGTCCTGTCATC+TGG + chr8_1:47256258-47256277 Msa1197070:three_prime_UTR 55.0%
! TGGGAGTGTGCTCCTCCTTG+AGG - chr8_1:47253719-47253738 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG - chr8_1:47253757-47253776 None:intergenic 60.0%
CTAGGCCAACCCAAGTGGGT+TGG + chr8_1:47253757-47253776 Msa1197070:intron 60.0%
GGGTGAACAGTGGAGCTGCA+AGG + chr8_1:47254568-47254587 Msa1197070:CDS 60.0%
TACTGCGGCCGCTCTGCAGT+AGG - chr8_1:47255397-47255416 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 47252595 47256919 47252595 ID=Msa1197070;Name=Msa1197070
chr8_1 mRNA 47252595 47256919 47252595 ID=Msa1197070-mRNA-1;Parent=Msa1197070;Name=Msa1197070-mRNA-1;_AED=0.08;_eAED=0.08;_QI=283|1|1|1|0.75|0.6|5|690|218
chr8_1 exon 47252595 47252813 47252595 ID=Msa1197070-mRNA-1:exon:14938;Parent=Msa1197070-mRNA-1
chr8_1 exon 47253132 47253456 47253132 ID=Msa1197070-mRNA-1:exon:14939;Parent=Msa1197070-mRNA-1
chr8_1 exon 47254558 47254662 47254558 ID=Msa1197070-mRNA-1:exon:14940;Parent=Msa1197070-mRNA-1
chr8_1 exon 47254802 47254849 47254802 ID=Msa1197070-mRNA-1:exon:14941;Parent=Msa1197070-mRNA-1
chr8_1 exon 47255987 47256919 47255987 ID=Msa1197070-mRNA-1:exon:14942;Parent=Msa1197070-mRNA-1
chr8_1 five_prime_UTR 47252595 47252813 47252595 ID=Msa1197070-mRNA-1:five_prime_utr;Parent=Msa1197070-mRNA-1
chr8_1 five_prime_UTR 47253132 47253195 47253132 ID=Msa1197070-mRNA-1:five_prime_utr;Parent=Msa1197070-mRNA-1
chr8_1 CDS 47253196 47253456 47253196 ID=Msa1197070-mRNA-1:cds;Parent=Msa1197070-mRNA-1
chr8_1 CDS 47254558 47254662 47254558 ID=Msa1197070-mRNA-1:cds;Parent=Msa1197070-mRNA-1
chr8_1 CDS 47254802 47254849 47254802 ID=Msa1197070-mRNA-1:cds;Parent=Msa1197070-mRNA-1
chr8_1 CDS 47255987 47256229 47255987 ID=Msa1197070-mRNA-1:cds;Parent=Msa1197070-mRNA-1
chr8_1 three_prime_UTR 47256230 47256919 47256230 ID=Msa1197070-mRNA-1:three_prime_utr;Parent=Msa1197070-mRNA-1
Gene Sequence

>Msa1197070

ATGGGATCTGAAGGGCCAAAGAAAATTACAATTCATGTAACTGGGTTTAAGAAGTTTCAAGGAGTGCCAATAAACCCTACAGAGATTATTGTTAATAATCTGAGGGATTATGTTGAAAAGAAAGGTCTTCCAGTTGGTGTTACTCTTGGAAGTTGCACTATTCTTGACGTGGCTGGTGATGGTGCACTTCCTCAGCTTTATCAGACCATGGAATCTGTTGTGTCGAAAACGGATACAGAGAGTAATGCAAATGTTGTTTGGCTTCACTTGGGGGTGAACAGTGGAGCTGCAAGGTTTGCCATTGAGCGGTTGGCGGTGAATGAAGCTACTTTCCGCTGTTCTGATGAATTAGGATGGCAACCACAACAAGTACCAATAGTCCTTGAGGATGGAGGAATTTCTCGAACAAGAGAGACTTCTCTACCCGTTGATGCAATATTGAAATCCTTGAAAAAGGGAAAAGATTATGATGTGATGATATCAGTCGACGCAGGACGATTTGTTTGCAATTATGTGTATTACCACTCTCTTCGGTTCGCAGAACAGAAGGGTAACAAGTCTCTATTTGTTCATGTTCCCTTATTTTCGAAAATCGATGAAGAAACTCAGATGAGATTTACATCCTCTCTTTTGGAGGCCATTGCTTCTGCATGTTAA

Protein sequence

>Msa1197070

MGSEGPKKITIHVTGFKKFQGVPINPTEIIVNNLRDYVEKKGLPVGVTLGSCTILDVAGDGALPQLYQTMESVVSKTDTESNANVVWLHLGVNSGAARFAIERLAVNEATFRCSDELGWQPQQVPIVLEDGGISRTRETSLPVDAILKSLKKGKDYDVMISVDAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFSKIDEETQMRFTSSLLEAIASAC*