AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0665080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0665080 MtrunA17_Chr4g0003161 98.185 496 9 0 1 496 1 496 0.0 1009
Msa0665080 MtrunA17_Chr2g0333241 76.673 493 91 2 1 493 1 469 0.0 775
Msa0665080 MtrunA17_Chr7g0253251 47.561 328 99 11 17 325 1 274 2.66e-77 244
Msa0665080 MtrunA17_Chr7g0266491 29.935 461 295 9 1 447 62 508 4.44e-58 201
Msa0665080 MtrunA17_Chr7g0253151 66.443 149 38 3 183 325 5 147 7.23e-56 184
Msa0665080 MtrunA17_Chr7g0253161 43.787 169 65 4 1 165 1 143 3.14e-35 129
Msa0665080 MtrunA17_Chr8g0350161 30.508 295 189 4 15 295 76 368 2.78e-33 129
Msa0665080 MtrunA17_Chr4g0073891 31.088 193 122 2 114 295 438 630 9.89e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0665080 AT1G48900.1 87.221 493 63 0 1 493 1 493 0.0 906
Msa0665080 AT5G49500.1 77.465 497 110 1 1 495 1 497 0.0 796
Msa0665080 AT1G15310.1 77.526 485 93 3 1 485 1 469 0.0 772
Msa0665080 AT1G48900.2 85.349 430 60 2 1 430 1 427 0.0 768
Msa0665080 AT5G49500.2 80.541 370 72 0 126 495 6 375 0.0 624
Msa0665080 AT5G03940.1 29.245 424 282 5 6 421 81 494 2.25e-57 200
Msa0665080 AT5G66970.1 42.105 171 96 2 1 171 1 168 1.88e-35 130
Msa0665080 AT2G45770.1 30.303 297 187 5 15 295 73 365 1.33e-31 125
Msa0665080 AT4G30600.2 31.088 193 122 2 114 295 441 633 1.43e-25 110
Msa0665080 AT4G30600.1 31.088 193 122 2 114 295 441 633 1.43e-25 110

Find 130 sgRNAs with CRISPR-Local

Find 563 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAGAATTTGGGGATTT+AGG 0.076946 4_4:+4392787 None:intergenic
GATTTCTCAGATCAAGAATT+TGG 0.163090 4_4:+4392778 None:intergenic
CCTATTACTTTGCAGCTATA+TGG 0.228796 4_4:-4387484 Msa0665080:intron
ATTAACAATCTTCTTAATAT+TGG 0.234181 4_4:+4392582 None:intergenic
ATCAAGAATTTGGGGATTTA+GGG 0.252385 4_4:+4392788 None:intergenic
CCATTTGTCAGTCGTCTATT+AGG 0.261155 4_4:-4386845 Msa0665080:intron
CGTGACTCATTCATGAGCTT+TGG 0.261469 4_4:+4386026 None:intergenic
GAACTCATTTCTCCCTTCTT+TGG 0.270678 4_4:+4385891 None:intergenic
AAGATGGTGCTCGCAGATTT+AGG 0.285184 4_4:-4392745 Msa0665080:CDS
TCAGGCCAGGGAGACTTGTC+TGG 0.286825 4_4:-4386645 Msa0665080:intron
CTGTCCTGATCCTTGCCTTT+TGG 0.304349 4_4:+4386248 None:intergenic
ATTTCTCAGATCAAGAATTT+GGG 0.322852 4_4:+4392779 None:intergenic
GAGGTTCTGGTCGACAAGTT+AGG 0.324653 4_4:-4385986 Msa0665080:CDS
GAAATCGATGGGATCTAATA+AGG 0.327013 4_4:-4385772 Msa0665080:CDS
GGCGAGCAGTAGGTTCTTAA+TGG 0.328753 4_4:-4385723 Msa0665080:exon
TGCAGCTTATTAAGCAGTTC+AGG 0.332627 4_4:+4386579 None:intergenic
GGAGTGAAAGCAGGCTTTCC+AGG 0.340451 4_4:+4389726 None:intergenic
TTTGGGGATTTAGGGTTTGA+TGG 0.343522 4_4:+4392796 None:intergenic
CAACACTCTGTTTAAATGCT+TGG 0.344126 4_4:+4387173 None:intergenic
CCACAGATGCTAAAGCAAAT+TGG 0.344130 4_4:-4385822 Msa0665080:CDS
ATGCGTATAGCTCGAGGTTC+TGG 0.344763 4_4:-4385999 Msa0665080:CDS
GTGACTCATTCATGAGCTTT+GGG 0.360788 4_4:+4386027 None:intergenic
AAAGCTAAGATCCCTTTCTA+TGG 0.370177 4_4:-4389264 Msa0665080:CDS
ATACCGTTGCTTCCGAAACT+TGG 0.375298 4_4:+4387337 None:intergenic
GTAATCTATGCAGTTTGAAT+TGG 0.391907 4_4:-4385630 Msa0665080:three_prime_UTR
TGAAGAAATGCGCCAAGTTT+CGG 0.395551 4_4:-4387349 Msa0665080:CDS
GACATTCATGTTTCGAGATA+AGG 0.395944 4_4:+4385869 None:intergenic
GATCCATTGGAACAACTTCA+TGG 0.399514 4_4:+4386607 None:intergenic
CTGATTCACAACAAATACTT+TGG 0.402378 4_4:+4385462 None:intergenic
AACACTCTGTTTAAATGCTT+GGG 0.406606 4_4:+4387174 None:intergenic
ATAGAAAGGGATCTTAGCTT+TGG 0.412663 4_4:+4389266 None:intergenic
CAATGAGCTCTGCAATATCT+TGG 0.413074 4_4:-4389751 Msa0665080:CDS
GTTTCAGAATATTCTTAAGA+TGG 0.414472 4_4:-4386520 Msa0665080:CDS
CCCGTCATATTCATTGGAAC+TGG 0.417778 4_4:-4386905 Msa0665080:CDS
AAGGACATGATGGGAATGTT+TGG 0.422905 4_4:-4385753 Msa0665080:CDS
ATGGGAATGTTTGGCGGCGG+TGG 0.436163 4_4:-4385744 Msa0665080:CDS
ACAAGCGTCTCGCAAAGATA+TGG 0.438419 4_4:-4385938 Msa0665080:CDS
CCAATTTGCTTTAGCATCTG+TGG 0.443903 4_4:+4385822 None:intergenic
CTGCCAAGGTAATTAACTAA+TGG 0.444851 4_4:+4385561 None:intergenic
TTTATCATCAAAAGAAAGGC+TGG 0.445583 4_4:-4389356 Msa0665080:CDS
AAGAGTCCCGTCATATTCAT+TGG 0.446556 4_4:-4386911 Msa0665080:CDS
TTTGAATGATTTCAGGATCT+GGG 0.449312 4_4:-4389407 Msa0665080:intron
TAGGGAAGTAATGGAGATGA+TGG 0.449379 4_4:-4385967 Msa0665080:CDS
TTTGTCATGGATAGCAGTAT+TGG 0.450799 4_4:-4387217 Msa0665080:CDS
CAAGATTACCTTCCATAGAA+AGG 0.453471 4_4:+4389252 None:intergenic
AGGTTCTGGTCGACAAGTTA+GGG 0.462023 4_4:-4385985 Msa0665080:CDS
GGCCATGAATTAGTACCAAA+AGG 0.464017 4_4:-4386263 Msa0665080:CDS
GTCATGTTCGTTGGTTTACA+AGG 0.464635 4_4:-4389681 Msa0665080:intron
TAGTAAATATACAGCAATTG+AGG 0.468692 4_4:+4385500 None:intergenic
AGGGCTTAAAATACCAAAGA+AGG 0.470429 4_4:-4385904 Msa0665080:CDS
AGATCTTGTTATCTTTGTCA+TGG 0.480044 4_4:-4387230 Msa0665080:CDS
TTTCAGAATATTCTTAAGAT+GGG 0.482656 4_4:-4386519 Msa0665080:CDS
CATGGATAGCAGTATTGGTC+AGG 0.485878 4_4:-4387212 Msa0665080:CDS
ATGACAAAGATAACAAGATC+TGG 0.486961 4_4:+4387232 None:intergenic
GGGATCTAATAAGGACATGA+TGG 0.488421 4_4:-4385763 Msa0665080:CDS
CTCTGCAATATCTTGGATCC+TGG 0.490760 4_4:-4389744 Msa0665080:CDS
AGTACCAAAAGGCAAGGATC+AGG 0.491706 4_4:-4386252 Msa0665080:CDS
CTTATAATTGTTGATACTAG+TGG 0.492017 4_4:-4387399 Msa0665080:CDS
AATCTTGATGATCTTGCTGC+TGG 0.492553 4_4:-4392562 Msa0665080:CDS
CTAAAGCAAATTGGAGGAAT+GGG 0.493593 4_4:-4385813 Msa0665080:CDS
TGGCGGCGGTGGCGAGCAGT+AGG 0.495152 4_4:-4385733 Msa0665080:exon
GCTAGTGTTGTCATGTTCGT+TGG 0.496689 4_4:-4389690 Msa0665080:CDS
ATGGACTCAATGACAAATGA+AGG 0.500602 4_4:-4386194 Msa0665080:intron
GTACATAATCCTCAAGGTAA+AGG 0.502143 4_4:+4386548 None:intergenic
AAGAGTTTCTTCGATGCGAA+TGG 0.507873 4_4:+4394416 None:intergenic
AGTAAATATACAGCAATTGA+GGG 0.509697 4_4:+4385501 None:intergenic
AGGCAAGGATCAGGACAGCC+AGG 0.513089 4_4:-4386243 Msa0665080:CDS
GCTAAAGCAAATTGGAGGAA+TGG 0.513724 4_4:-4385814 Msa0665080:CDS
AAGATTACCTTCCATAGAAA+GGG 0.516707 4_4:+4389253 None:intergenic
AGTTCAGGCTGTTGATCCAT+TGG 0.517338 4_4:+4386594 None:intergenic
GAAATCAATCTTGATCAAGA+TGG 0.517773 4_4:-4392761 Msa0665080:exon
ACTAATTCATGGCCAAATCC+TGG 0.519647 4_4:+4386272 None:intergenic
CCTAATAGACGACTGACAAA+TGG 0.523880 4_4:+4386845 None:intergenic
CAGGCCAGGGAGACTTGTCT+GGG 0.527597 4_4:-4386644 Msa0665080:CDS
TTATAATTGTTGATACTAGT+GGG 0.532166 4_4:-4387398 Msa0665080:CDS
GAACTTCTCTCCACAGGAGA+AGG 0.533313 4_4:-4385396 Msa0665080:three_prime_UTR
AATCCATGAAGTTGTTCCAA+TGG 0.540168 4_4:-4386610 Msa0665080:CDS
AAAATGGATGGCCATGCAAA+GGG 0.540546 4_4:-4387127 Msa0665080:CDS
CTAAGATCCCTTTCTATGGA+AGG 0.541043 4_4:-4389260 Msa0665080:intron
GATGGCCATGCAAAGGGTGG+TGG 0.543431 4_4:-4387121 Msa0665080:CDS
AAGATATGGAGCAAAATGAA+AGG 0.553586 4_4:-4385924 Msa0665080:CDS
GCGCACCACCACCCTTTGCA+TGG 0.554323 4_4:+4387116 None:intergenic
GTATCTGCACATACTAGAGC+TGG 0.555721 4_4:+4389330 None:intergenic
GGGCCATTAGTTAATTACCT+TGG 0.556737 4_4:-4385564 Msa0665080:three_prime_UTR
CCAGTTCCAATGAATATGAC+GGG 0.558074 4_4:+4386905 None:intergenic
ACAAAGCTTGATGAAATCGA+TGG 0.558585 4_4:-4385784 Msa0665080:CDS
TCTGACCGCAGAAATCTCAA+TGG 0.560687 4_4:-4385585 Msa0665080:three_prime_UTR
TGAACCCAGACAAGTCTCCC+TGG 0.565640 4_4:+4386640 None:intergenic
GAACTCTTATGAAGCACAAG+AGG 0.565713 4_4:+4385666 None:intergenic
TAAGCGTTACATGACAATGA+TGG 0.566456 4_4:-4386213 Msa0665080:CDS
AGATATGGAGCAAAATGAAA+GGG 0.567829 4_4:-4385923 Msa0665080:CDS
GACATGATGGGAATGTTTGG+CGG 0.570743 4_4:-4385750 Msa0665080:CDS
TTTAAACAGAGTGTTGCAGT+TGG 0.573047 4_4:-4387166 Msa0665080:CDS
CTGACCGCAGAAATCTCAAT+GGG 0.574030 4_4:-4385584 Msa0665080:three_prime_UTR
TCGACAAGTTAGGGAAGTAA+TGG 0.575282 4_4:-4385976 Msa0665080:CDS
TAAATCGAACTTCTCTCCAC+AGG 0.577966 4_4:-4385402 Msa0665080:three_prime_UTR
CATTGGAACTGGAGAACACA+TGG 0.583180 4_4:-4386894 Msa0665080:CDS
CTGCTTAATAAGCTGCAAGA+AGG 0.584033 4_4:-4386573 Msa0665080:CDS
CAAAGCTTGATGAAATCGAT+GGG 0.588981 4_4:-4385783 Msa0665080:CDS
GGATCTAATAAGGACATGAT+GGG 0.588990 4_4:-4385762 Msa0665080:CDS
AACAAGCTTGAATTGAACAT+CGG 0.590449 4_4:+4392618 None:intergenic
TCCAGTTCCAATGAATATGA+CGG 0.593096 4_4:+4386904 None:intergenic
TAATGGCTTATGCGCTGCCG+AGG 0.595769 4_4:-4385706 Msa0665080:three_prime_UTR
ATTTGCTTTAGCATCTGTGG+AGG 0.599015 4_4:+4385825 None:intergenic
TGAATTAGTACCAAAAGGCA+AGG 0.600112 4_4:-4386258 Msa0665080:CDS
TGTGCAGATACATTCAGAGC+TGG 0.600759 4_4:-4389318 Msa0665080:CDS
AAGCAAATTGGAGGAATGGG+TGG 0.601558 4_4:-4385810 Msa0665080:CDS
CAGATGCTAAAGCAAATTGG+AGG 0.603876 4_4:-4385819 Msa0665080:CDS
GCGCCAAGTTTCGGAAGCAA+CGG 0.608253 4_4:-4387340 Msa0665080:intron
GGGCTTAAAATACCAAAGAA+GGG 0.608894 4_4:-4385903 Msa0665080:CDS
TTTGCTTTAGCATCTGTGGA+GGG 0.610701 4_4:+4385826 None:intergenic
GCTTTAGCATCTGTGGAGGG+AGG 0.611539 4_4:+4385829 None:intergenic
AGCAAATTGGAGGAATGGGT+GGG 0.615310 4_4:-4385809 Msa0665080:CDS
AAGAAGGAACCTTTACCTTG+AGG 0.616437 4_4:-4386557 Msa0665080:CDS
ATGGTGCTCGCAGATTTAGG+AGG 0.616535 4_4:-4392742 Msa0665080:CDS
CTGCTCGTACATAATCCTCA+AGG 0.625136 4_4:+4386542 None:intergenic
ATGATGGGAATGTTTGGCGG+CGG 0.634083 4_4:-4385747 Msa0665080:CDS
GAAAATTGCTGTGGAAGGTG+TGG 0.635052 4_4:-4387448 Msa0665080:CDS
TAAGATGGGTCCCATGAGCG+AGG 0.637224 4_4:-4386505 Msa0665080:intron
CAAAGCTCATGAATGAGTCA+CGG 0.644435 4_4:-4386025 Msa0665080:CDS
TGGTGCTCGCAGATTTAGGA+GGG 0.645588 4_4:-4392741 Msa0665080:CDS
TTTCTCAGATCAAGAATTTG+GGG 0.652509 4_4:+4392780 None:intergenic
TGAGTATGAACCTTCTCCTG+TGG 0.659601 4_4:+4385386 None:intergenic
CCTGTGAAAATTGCTGTGGA+AGG 0.664105 4_4:-4387453 Msa0665080:CDS
AGATCCTGTGAAAATTGCTG+TGG 0.670741 4_4:-4387457 Msa0665080:CDS
ATGGCCCATTGAGATTTCTG+CGG 0.681516 4_4:+4385580 None:intergenic
ATGGATGGCCATGCAAAGGG+TGG 0.687249 4_4:-4387124 Msa0665080:CDS
CGGATGATGCGTATAGCTCG+AGG 0.687350 4_4:-4386005 Msa0665080:CDS
TAATTGTTGATACTAGTGGG+CGG 0.701070 4_4:-4387395 Msa0665080:CDS
AAGTAATCAGAAACAAACCT+CGG 0.701173 4_4:+4385689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATATTAAACATAATAG+GGG + chr4_4:4393342-4393361 None:intergenic 10.0%
!! ATTAACAATCTTCTTAATAT+TGG + chr4_4:4385664-4385683 None:intergenic 15.0%
!! TGATAAACCAAATAAAATAT+TGG + chr4_4:4385756-4385775 None:intergenic 15.0%
!! ATTAACAATCTTCTTAATAT+TGG + chr4_4:4385664-4385683 None:intergenic 15.0%
!! AATAAAAAAATTGAAGAAAG+AGG + chr4_4:4387320-4387339 None:intergenic 15.0%
!!! AAATTAATTTTGACATGTTT+TGG + chr4_4:4388609-4388628 None:intergenic 15.0%
!!! GAATTGATTCTAAAAAAAAA+GGG + chr4_4:4388831-4388850 None:intergenic 15.0%
!!! AGAATTGATTCTAAAAAAAA+AGG + chr4_4:4388832-4388851 None:intergenic 15.0%
!! AAACTATAAGAAAATTACAT+TGG + chr4_4:4388929-4388948 None:intergenic 15.0%
!!! ATTTTGGAATATACTTAATT+AGG - chr4_4:4389003-4389022 Msa0665080:intron 15.0%
!! ATAAATATTACTTTAACAAC+TGG + chr4_4:4389781-4389800 None:intergenic 15.0%
!! AGTAGGTAATTATATTTAAT+CGG + chr4_4:4390168-4390187 None:intergenic 15.0%
!! ATAAAACAATATTAATCTGA+AGG + chr4_4:4390706-4390725 None:intergenic 15.0%
!!! TAATTGTTGTTTTTTTAAGA+AGG - chr4_4:4391648-4391667 Msa0665080:intron 15.0%
!!! AATTGTTGTTTTTTTAAGAA+GGG - chr4_4:4391649-4391668 Msa0665080:intron 15.0%
!!! AAAGAATGCTTTTTAATTTT+TGG + chr4_4:4392137-4392156 None:intergenic 15.0%
!!! TTGCTTGAATTATTTTTTTT+TGG - chr4_4:4392300-4392319 Msa0665080:intron 15.0%
!! AACATCATATTTATATAAGT+TGG + chr4_4:4392779-4392798 None:intergenic 15.0%
!! ATTATATTAAACATAATAGG+GGG + chr4_4:4393341-4393360 None:intergenic 15.0%
!!! ATTTTTGAGATGAAGAATTT+GGG + chr4_4:4385467-4385486 None:intergenic 20.0%
!!! TCTTTCTCCAATATTTTATT+TGG - chr4_4:4385746-4385765 Msa0665080:CDS 20.0%
!! AGAAAATTGTAACATTTAGA+AGG + chr4_4:4386153-4386172 None:intergenic 20.0%
!! TAATCAACATTAACATTTGA+AGG + chr4_4:4386261-4386280 None:intergenic 20.0%
!! AAGAAGATCTTAAATTTGAA+TGG + chr4_4:4386523-4386542 None:intergenic 20.0%
!! GTATTAATTTAGTGTATGTT+TGG - chr4_4:4387375-4387394 Msa0665080:CDS 20.0%
!! TTGTATTGTTTCAATTAATG+TGG - chr4_4:4387684-4387703 Msa0665080:intron 20.0%
!! TGTATTGTTTCAATTAATGT+GGG - chr4_4:4387685-4387704 Msa0665080:intron 20.0%
!! TGATGAAATAAATAGTTTGA+GGG - chr4_4:4387721-4387740 Msa0665080:intron 20.0%
!! TTGATTGTGTAAAATTATTC+TGG - chr4_4:4387746-4387765 Msa0665080:intron 20.0%
!!! CTTCAAGTTATAATCAATTT+TGG + chr4_4:4388303-4388322 None:intergenic 20.0%
!! TATAACTTGAAGCTAAAAAT+TGG - chr4_4:4388311-4388330 Msa0665080:intron 20.0%
!!! AATGTAAAGTGGTATATTTT+TGG - chr4_4:4388454-4388473 Msa0665080:intron 20.0%
!! TTTGGATATTTATGTATGTT+TGG + chr4_4:4388867-4388886 None:intergenic 20.0%
!! CATACATAAATATCCAAATT+TGG - chr4_4:4388869-4388888 Msa0665080:intron 20.0%
!!! ATTTTTTGTTCAGTTTGTAT+TGG + chr4_4:4388955-4388974 None:intergenic 20.0%
!! GTATAATATGAACAAAAAGT+AGG + chr4_4:4390185-4390204 None:intergenic 20.0%
!!! CTATTGCTATTTATTTTCAA+TGG - chr4_4:4390346-4390365 Msa0665080:intron 20.0%
!!! TATTCTTTTTGAATGATTTC+AGG - chr4_4:4390402-4390421 Msa0665080:intron 20.0%
!!! ATATTATATGGATTTTGTCA+TGG - chr4_4:4390797-4390816 Msa0665080:intron 20.0%
!!! ATGTAAATTTTTTCCTGAAA+AGG + chr4_4:4391014-4391033 None:intergenic 20.0%
!!! TCAGGAAAAAATTTACATTT+TGG - chr4_4:4391016-4391035 Msa0665080:intron 20.0%
!!! AATTTACATTTTGGTTTTCT+AGG - chr4_4:4391025-4391044 Msa0665080:intron 20.0%
!!! ATTTACATTTTGGTTTTCTA+GGG - chr4_4:4391026-4391045 Msa0665080:intron 20.0%
!!! TTGTTCTGTTATTTGAATTT+GGG - chr4_4:4391197-4391216 Msa0665080:intron 20.0%
!! GAAAATTTGAATTGAGTAAT+TGG - chr4_4:4391234-4391253 Msa0665080:intron 20.0%
!!! ATTGTTGTTTTTTTAAGAAG+GGG - chr4_4:4391650-4391669 Msa0665080:intron 20.0%
!! GAAAGATAATTATGATATGA+AGG - chr4_4:4391682-4391701 Msa0665080:intron 20.0%
!!! CTCTTTTTTCTTTATTTTTG+CGG - chr4_4:4392209-4392228 Msa0665080:intron 20.0%
!! TTATAATTGTTGATACTAGT+GGG - chr4_4:4392418-4392437 Msa0665080:intron 20.0%
!! AAACATAATACGATTATATC+AGG + chr4_4:4392743-4392762 None:intergenic 20.0%
!!! ATGATGATGATAACAAAAAA+AGG + chr4_4:4392833-4392852 None:intergenic 20.0%
!!! ATTTTTTTTGTTTAGTGTTG+CGG - chr4_4:4392877-4392896 Msa0665080:intron 20.0%
!! TTAATGTACATGATTGAAAA+AGG + chr4_4:4393106-4393125 None:intergenic 20.0%
!! TTTCAGAATATTCTTAAGAT+GGG - chr4_4:4393297-4393316 Msa0665080:intron 20.0%
!!! AATTAATGGTTGATTTATGT+AGG - chr4_4:4393507-4393526 Msa0665080:intron 20.0%
!! AAAAAAAAAAAAAACTGCCA+AGG + chr4_4:4394272-4394291 None:intergenic 20.0%
!!! GATTTTTGAGATGAAGAATT+TGG + chr4_4:4385468-4385487 None:intergenic 25.0%
! AAAATCTTCTTTCTTCAAGA+TGG - chr4_4:4385482-4385501 Msa0665080:three_prime_UTR 25.0%
! CAAATTCTCTATTCACAATA+TGG - chr4_4:4386017-4386036 Msa0665080:CDS 25.0%
! AAAATGTAGAAAAATGCACA+AGG + chr4_4:4386192-4386211 None:intergenic 25.0%
! NNNNNNNTGCATCCTAATGA+AGG - chr4_4:4386385-4386404 Msa0665080:intron 25.0%
!!! TAATTGGAACAGTTTTATTG+AGG + chr4_4:4386432-4386451 None:intergenic 25.0%
! GATCTTCTTGATTTAAATAG+AGG - chr4_4:4386534-4386553 Msa0665080:CDS 25.0%
!! ATGAATACAATCAACTTTTG+AGG + chr4_4:4386685-4386704 None:intergenic 25.0%
! AAGATTAATAATCTCAAGCA+AGG - chr4_4:4386723-4386742 Msa0665080:intron 25.0%
! AGATTAATAATCTCAAGCAA+GGG - chr4_4:4386724-4386743 Msa0665080:intron 25.0%
! ATTTCTCAGATCAAGAATTT+GGG + chr4_4:4387040-4387059 None:intergenic 25.0%
! ATTTAGTGTATGTTTGGTTA+TGG - chr4_4:4387381-4387400 Msa0665080:CDS 25.0%
! TTTAGTGTATGTTTGGTTAT+GGG - chr4_4:4387382-4387401 Msa0665080:CDS 25.0%
!! AAGTGAGTTGAATGATAAAT+TGG - chr4_4:4387509-4387528 Msa0665080:intron 25.0%
! GATATGTACTCAAAAGAAAA+AGG + chr4_4:4387644-4387663 None:intergenic 25.0%
!!! TTTTGAGTACATATCTAACT+GGG - chr4_4:4387649-4387668 Msa0665080:intron 25.0%
! GTGATGAAATAAATAGTTTG+AGG - chr4_4:4387720-4387739 Msa0665080:intron 25.0%
!! CTTCAAGTTAGAATCAATTA+TGG - chr4_4:4388202-4388221 Msa0665080:intron 25.0%
!! CAAGTTATAATCAATTTTGG+AGG + chr4_4:4388300-4388319 None:intergenic 25.0%
!! TAGAATCAATTCTCTAAAAG+TGG - chr4_4:4388839-4388858 Msa0665080:intron 25.0%
! TTTATACCATCTACAATTTC+AGG + chr4_4:4388897-4388916 None:intergenic 25.0%
!! TACAATTTGAGAGACTATTT+TGG - chr4_4:4388987-4389006 Msa0665080:intron 25.0%
! TGATATAGTGATACAATTTC+AGG - chr4_4:4389027-4389046 Msa0665080:intron 25.0%
! TATATTCTATTCTGCATTAG+AGG - chr4_4:4389089-4389108 Msa0665080:intron 25.0%
!!! GTTAGACTTTAGAGTTATTT+TGG - chr4_4:4389216-4389235 Msa0665080:intron 25.0%
! ATTAAACTGAAAACAACTGA+TGG - chr4_4:4389390-4389409 Msa0665080:CDS 25.0%
!! GATTTCAACTTTTCTTTCAA+AGG + chr4_4:4389553-4389572 None:intergenic 25.0%
! TTTAACAACTGGAATTGAAT+GGG + chr4_4:4389770-4389789 None:intergenic 25.0%
! CATATTTCATCCTTTGAATT+TGG - chr4_4:4389855-4389874 Msa0665080:intron 25.0%
! TTGATCTTAGAATTTAGAAG+AGG - chr4_4:4389904-4389923 Msa0665080:intron 25.0%
! TTAAACCACTAACAAAAACA+CGG + chr4_4:4389946-4389965 None:intergenic 25.0%
!!! TTACAAACTCTTTTGATTCT+AGG - chr4_4:4390035-4390054 Msa0665080:intron 25.0%
! ATAGACAACCAATAATTGTA+AGG + chr4_4:4390330-4390349 None:intergenic 25.0%
!! GCATTTTATCATCAAAAGAA+AGG - chr4_4:4390456-4390475 Msa0665080:intron 25.0%
! TATTAGACATGCTTTATACA+TGG - chr4_4:4390723-4390742 Msa0665080:intron 25.0%
! GCAAAGACAGTTATATTATA+TGG - chr4_4:4390785-4390804 Msa0665080:intron 25.0%
! GAAAGACAATTATGATATGA+AGG - chr4_4:4390895-4390914 Msa0665080:intron 25.0%
! CATGTATAGTTGTTAGAAAT+TGG - chr4_4:4390935-4390954 Msa0665080:intron 25.0%
! TCTAGATTAGAAGTTAATGT+CGG - chr4_4:4390971-4390990 Msa0665080:intron 25.0%
! AATTGAGTAACTGATTATGT+TGG - chr4_4:4391161-4391180 Msa0665080:intron 25.0%
!! GTTGTTCTGTTATTTGAATT+TGG - chr4_4:4391196-4391215 Msa0665080:intron 25.0%
! AATTTGCAAATAGGCAAAAA+AGG + chr4_4:4391498-4391517 None:intergenic 25.0%
! TTGTCTATTCACAAATTTCA+AGG - chr4_4:4391549-4391568 Msa0665080:intron 25.0%
!! TCTAGTTTAGAAGTTAAAGT+CGG - chr4_4:4391758-4391777 Msa0665080:intron 25.0%
! GCAATGTTAAAAGTGATTAT+TGG + chr4_4:4391906-4391925 None:intergenic 25.0%
! AAGAACATAAGGAATTGAAA+AGG + chr4_4:4391977-4391996 None:intergenic 25.0%
! TTATTGCAAGAAAGAACATA+AGG + chr4_4:4391988-4392007 None:intergenic 25.0%
! ATGTTCTTTCTTGCAATAAA+AGG - chr4_4:4391989-4392008 Msa0665080:intron 25.0%
! TGTTCTTTCTTGCAATAAAA+GGG - chr4_4:4391990-4392009 Msa0665080:intron 25.0%
! ATGCTATGTTATTGTTCTAT+TGG - chr4_4:4392089-4392108 Msa0665080:intron 25.0%
!!! TTCTTTTTTTCTTTATCCCA+AGG - chr4_4:4392151-4392170 Msa0665080:intron 25.0%
! TAAAGAAAAAAGAGGAGAAA+TGG + chr4_4:4392203-4392222 None:intergenic 25.0%
! CGCAAAAATAAAGAAAAAAG+AGG + chr4_4:4392211-4392230 None:intergenic 25.0%
! CTTATAATTGTTGATACTAG+TGG - chr4_4:4392417-4392436 Msa0665080:intron 25.0%
! AGCTGTAATTATCACAAAAA+TGG - chr4_4:4392673-4392692 Msa0665080:CDS 25.0%
! GTAATTATCACAAAAATGGA+TGG - chr4_4:4392677-4392696 Msa0665080:CDS 25.0%
! AAGTATATACATGCTTGAAA+AGG + chr4_4:4393045-4393064 None:intergenic 25.0%
!! TTCAAGCATGTATATACTTT+TGG - chr4_4:4393046-4393065 Msa0665080:intron 25.0%
! GATTAATATAAAGGGAAAAC+TGG + chr4_4:4393133-4393152 None:intergenic 25.0%
! GTTTCAGAATATTCTTAAGA+TGG - chr4_4:4393296-4393315 Msa0665080:intron 25.0%
!!! GGAAACAAAATAGTTTTACA+CGG + chr4_4:4394297-4394316 None:intergenic 25.0%
! AGTAAATATACAGCAATTGA+GGG + chr4_4:4394318-4394337 None:intergenic 25.0%
! TAGTAAATATACAGCAATTG+AGG + chr4_4:4394319-4394338 None:intergenic 25.0%
! GATGAAGAATTTGGGATTTA+GGG + chr4_4:4385459-4385478 None:intergenic 30.0%
! AGATGAAGAATTTGGGATTT+AGG + chr4_4:4385460-4385479 None:intergenic 30.0%
TTGTTGCTGGTCATAATAAA+CGG - chr4_4:4385694-4385713 Msa0665080:three_prime_UTR 30.0%
GTATCAATTAATTGCGTGTT+TGG - chr4_4:4385792-4385811 Msa0665080:CDS 30.0%
AAAGAACACAAAGAGATGAA+GGG + chr4_4:4385991-4386010 None:intergenic 30.0%
AAGGAATATTGCAGAAAATG+TGG + chr4_4:4386134-4386153 None:intergenic 30.0%
ACTGTTCCAATTATCTTTCT+TGG - chr4_4:4386439-4386458 Msa0665080:intron 30.0%
TCTTGACCAAGAAAGATAAT+TGG + chr4_4:4386448-4386467 None:intergenic 30.0%
! AACACGTTCGTTTTCATTTA+TGG - chr4_4:4386495-4386514 Msa0665080:intron 30.0%
AACACGATTGTTTGAGAAAT+TGG + chr4_4:4386618-4386637 None:intergenic 30.0%
! TTCTCAAACAATCGTGTTTT+TGG - chr4_4:4386620-4386639 Msa0665080:CDS 30.0%
TTGTATTCATGTTGCTAATC+TGG - chr4_4:4386695-4386714 Msa0665080:intron 30.0%
TGTATTCATGTTGCTAATCT+GGG - chr4_4:4386696-4386715 Msa0665080:intron 30.0%
GATTGCTTTACTAAGATATG+AGG - chr4_4:4386775-4386794 Msa0665080:intron 30.0%
TTACTAAGATATGAGGACTT+TGG - chr4_4:4386782-4386801 Msa0665080:intron 30.0%
TACTAAGATATGAGGACTTT+GGG - chr4_4:4386783-4386802 Msa0665080:intron 30.0%
!!! AAGTTTTTTGTGAGGAAGAT+CGG + chr4_4:4387000-4387019 None:intergenic 30.0%
!!! TTTGATGGAAGTTTTTTGTG+AGG + chr4_4:4387008-4387027 None:intergenic 30.0%
ATCAAGAATTTGGGGATTTA+GGG + chr4_4:4387031-4387050 None:intergenic 30.0%
TTTCTCAGATCAAGAATTTG+GGG + chr4_4:4387039-4387058 None:intergenic 30.0%
GATTTCTCAGATCAAGAATT+TGG + chr4_4:4387041-4387060 None:intergenic 30.0%
GAAATCAATCTTGATCAAGA+TGG - chr4_4:4387055-4387074 Msa0665080:intron 30.0%
AACAAGCTTGAATTGAACAT+CGG + chr4_4:4385628-4385647 None:intergenic 30.0%
TTAGTGTATGTTTGGTTATG+GGG - chr4_4:4387383-4387402 Msa0665080:CDS 30.0%
CTCAAAAGAAAAAGGACATA+AGG + chr4_4:4387636-4387655 None:intergenic 30.0%
!! CTTTTGAGTACATATCTAAC+TGG - chr4_4:4387648-4387667 Msa0665080:intron 30.0%
TCTAACAAGCAGCTAAAAAT+TGG + chr4_4:4387878-4387897 None:intergenic 30.0%
! TCTAATTTGCAGCTAACAAT+TGG - chr4_4:4387944-4387963 Msa0665080:intron 30.0%
!!! TTGATTCTAGGACTGATTTT+TGG - chr4_4:4387972-4387991 Msa0665080:intron 30.0%
!! TGTTCTAACTCACTTTTACT+CGG - chr4_4:4387995-4388014 Msa0665080:intron 30.0%
!!! CGATACCAATTTTTAGTATG+TGG - chr4_4:4388030-4388049 Msa0665080:intron 30.0%
TGTCACCACATACTAAAAAT+TGG + chr4_4:4388038-4388057 None:intergenic 30.0%
GATTCTGACTAAAATTGAGT+TGG - chr4_4:4388078-4388097 Msa0665080:intron 30.0%
!! GAGGTGAAGTGATTTATTTT+TGG - chr4_4:4388100-4388119 Msa0665080:intron 30.0%
TCTAACTTGAAGCTAAACAT+TGG + chr4_4:4388194-4388213 None:intergenic 30.0%
!! AAATTGGAGCTTTTGATTCT+AGG - chr4_4:4388327-4388346 Msa0665080:intron 30.0%
! AAAGTGAGTTGAATGTAAAG+TGG - chr4_4:4388443-4388462 Msa0665080:intron 30.0%
! GTTGATTCTAACTTAAAGTC+AGG + chr4_4:4388552-4388571 None:intergenic 30.0%
! CTTTAAGTTAGAATCAACTC+TGG - chr4_4:4388554-4388573 Msa0665080:intron 30.0%
! TCTAGAATCAATTCTCTAGA+GGG - chr4_4:4388635-4388654 Msa0665080:intron 30.0%
ACAATTTCAGGAACCAAATT+TGG + chr4_4:4388885-4388904 None:intergenic 30.0%
ACTATGTACTTTGATCTATG+AGG - chr4_4:4389180-4389199 Msa0665080:intron 30.0%
TTGAATGGGCATCTAATTTA+TGG + chr4_4:4389756-4389775 None:intergenic 30.0%
CTTTAACAACTGGAATTGAA+TGG + chr4_4:4389771-4389790 None:intergenic 30.0%
TGTACTTCTTCCAAATTCAA+AGG + chr4_4:4389868-4389887 None:intergenic 30.0%
!!! ACACTAGCTTTTCCTTTTTT+GGG + chr4_4:4390114-4390133 None:intergenic 30.0%
!!! AACACTAGCTTTTCCTTTTT+TGG + chr4_4:4390115-4390134 None:intergenic 30.0%
TCATTTGATGCAAATGATAC+TGG - chr4_4:4390213-4390232 Msa0665080:intron 30.0%
! TTTTGAATGATTTCAGGATC+TGG - chr4_4:4390408-4390427 Msa0665080:intron 30.0%
TTTGAATGATTTCAGGATCT+GGG - chr4_4:4390409-4390428 Msa0665080:intron 30.0%
! TGCATATTTTGTACAAGTAG+TGG + chr4_4:4390439-4390458 None:intergenic 30.0%
TTTATCATCAAAAGAAAGGC+TGG - chr4_4:4390460-4390479 Msa0665080:intron 30.0%
AAGATTACCTTCCATAGAAA+GGG + chr4_4:4390566-4390585 None:intergenic 30.0%
GTAAACTCAAAATCTTCAAC+TGG - chr4_4:4390623-4390642 Msa0665080:intron 30.0%
TAGATTTCGAAACTATCAGA+CGG - chr4_4:4390838-4390857 Msa0665080:intron 30.0%
ATTGTCTTTCCGAAATGAAT+CGG + chr4_4:4390885-4390904 None:intergenic 30.0%
ATTTACTACTCTAGATACAG+CGG + chr4_4:4391324-4391343 None:intergenic 30.0%
TACAATTTCAGAGTGCAAAT+TGG + chr4_4:4391349-4391368 None:intergenic 30.0%
!! AATTTGCACTCTGAAATTGT+AGG - chr4_4:4391348-4391367 Msa0665080:intron 30.0%
TTGCCTATTCACAAATTTCA+GGG + chr4_4:4391390-4391409 None:intergenic 30.0%
TTTGCCTATTCACAAATTTC+AGG + chr4_4:4391391-4391410 None:intergenic 30.0%
! AAAAAAGACCCGATTTTGAA+TGG - chr4_4:4391408-4391427 Msa0665080:intron 30.0%
AGTCCATACAAGTTAACAAA+AGG + chr4_4:4391450-4391469 None:intergenic 30.0%
TTGCCTATTTGCAAATTTCA+AGG - chr4_4:4391501-4391520 Msa0665080:intron 30.0%
! GACAAAAAAAGACCTGATTT+TGG + chr4_4:4391534-4391553 None:intergenic 30.0%
!! TTTTAAGAAGGGGTTCATTT+CGG - chr4_4:4391660-4391679 Msa0665080:intron 30.0%
CATGTACAGTTGTTAGAAAT+TGG - chr4_4:4391722-4391741 Msa0665080:intron 30.0%
!!! ATGTGGATTTTTTCCTGAAA+AGG + chr4_4:4391801-4391820 None:intergenic 30.0%
! TCAGGAAAAAATCCACATTT+TGG - chr4_4:4391803-4391822 Msa0665080:intron 30.0%
!!! AATCCACATTTTGGTTTTCT+AGG - chr4_4:4391812-4391831 Msa0665080:intron 30.0%
!!! ATCCACATTTTGGTTTTCTA+GGG - chr4_4:4391813-4391832 Msa0665080:intron 30.0%
!!! ATGACATTTTGGGCTTTATT+TGG - chr4_4:4391840-4391859 Msa0665080:intron 30.0%
!!! TGACATTTTGGGCTTTATTT+GGG - chr4_4:4391841-4391860 Msa0665080:intron 30.0%
ATTGAAAAGGCTAGAACATT+TGG + chr4_4:4391964-4391983 None:intergenic 30.0%
!!! AATCCACAGGGTTTTTTAAT+TGG + chr4_4:4392040-4392059 None:intergenic 30.0%
AATTAAAAAACCCTGTGGAT+TGG - chr4_4:4392039-4392058 Msa0665080:intron 30.0%
AGAAATCCAAATAGATCCTT+GGG + chr4_4:4392170-4392189 None:intergenic 30.0%
!!! TTTTCTTTATTTTTGCGGTG+AGG - chr4_4:4392214-4392233 Msa0665080:intron 30.0%
!!! TTTCTTTATTTTTGCGGTGA+GGG - chr4_4:4392215-4392234 Msa0665080:intron 30.0%
!! ACAACATAATGATGGACTAT+GGG + chr4_4:4392247-4392266 None:intergenic 30.0%
TTGTATGGACAACATAATGA+TGG + chr4_4:4392255-4392274 None:intergenic 30.0%
CATATAGCTGCAAAGTAATA+GGG + chr4_4:4392334-4392353 None:intergenic 30.0%
TGAAAGATATTAGAGACTAC+TGG + chr4_4:4392546-4392565 None:intergenic 30.0%
ATGACAAAGATAACAAGATC+TGG + chr4_4:4392587-4392606 None:intergenic 30.0%
! AGATCTTGTTATCTTTGTCA+TGG - chr4_4:4392586-4392605 Msa0665080:CDS 30.0%
AACACTCTGTTTAAATGCTT+GGG + chr4_4:4392645-4392664 None:intergenic 30.0%
TGTACATGATTGAAAAAGGT+GGG + chr4_4:4393102-4393121 None:intergenic 30.0%
ATGTACATGATTGAAAAAGG+TGG + chr4_4:4393103-4393122 None:intergenic 30.0%
CGACTGGAGATTAATATAAA+GGG + chr4_4:4393141-4393160 None:intergenic 30.0%
CCTTTATATTAATCTCCAGT+CGG - chr4_4:4393139-4393158 Msa0665080:intron 30.0%
!! AAAGTATTTTTCCACCAAGT+GGG + chr4_4:4393397-4393416 None:intergenic 30.0%
AATTAAAGGTTAGCATGTGA+AGG + chr4_4:4393738-4393757 None:intergenic 30.0%
TGAAACACGATAGCAATTAA+AGG + chr4_4:4393752-4393771 None:intergenic 30.0%
AAGATATGGAGCAAAATGAA+AGG - chr4_4:4393892-4393911 Msa0665080:intron 30.0%
AGATATGGAGCAAAATGAAA+GGG - chr4_4:4393893-4393912 Msa0665080:intron 30.0%
AAGTAATCAGAAACAAACCT+CGG + chr4_4:4394130-4394149 None:intergenic 30.0%
GTAATCTATGCAGTTTGAAT+TGG - chr4_4:4394186-4394205 Msa0665080:intron 30.0%
CTGATTCACAACAAATACTT+TGG + chr4_4:4394357-4394376 None:intergenic 30.0%
!! GGAAGTTTTGTGATGAAGAT+CGG + chr4_4:4385430-4385449 None:intergenic 35.0%
! ATTTGGGATTTAGGGTTTGA+TGG + chr4_4:4385451-4385470 None:intergenic 35.0%
! AATCTTGATGATCTTGTTGC+TGG - chr4_4:4385681-4385700 Msa0665080:three_prime_UTR 35.0%
!! GATGAAAAAGCGTTACTTGT+CGG + chr4_4:4385728-4385747 None:intergenic 35.0%
TAATTGCGTGTTTGGTTATG+CGG - chr4_4:4385800-4385819 Msa0665080:CDS 35.0%
CCTAAAACCCAAACCAAATA+GGG + chr4_4:4385932-4385951 None:intergenic 35.0%
ACCTAAAACCCAAACCAAAT+AGG + chr4_4:4385933-4385952 None:intergenic 35.0%
!!! TTTGGTTTGGGTTTTAGGTT+TGG - chr4_4:4385934-4385953 Msa0665080:CDS 35.0%
AAGAACACAAAGAGATGAAG+GGG + chr4_4:4385990-4386009 None:intergenic 35.0%
GAAAGAACACAAAGAGATGA+AGG + chr4_4:4385992-4386011 None:intergenic 35.0%
AGATCAATACAATGAGCTCT+TGG - chr4_4:4386465-4386484 Msa0665080:intron 35.0%
AATGAAAACGAACGTGTTCT+TGG + chr4_4:4386493-4386512 None:intergenic 35.0%
! TTGATTTAAATAGAGGTGCG+TGG - chr4_4:4386541-4386560 Msa0665080:CDS 35.0%
! TGATTTAAATAGAGGTGCGT+GGG - chr4_4:4386542-4386561 Msa0665080:CDS 35.0%
ACGATTGTTTGAGAAATTGG+AGG + chr4_4:4386615-4386634 None:intergenic 35.0%
! AAGGTCTTGTCATACATCAA+TGG + chr4_4:4386652-4386671 None:intergenic 35.0%
TGATGTATGACAAGACCTTA+AGG - chr4_4:4386653-4386672 Msa0665080:intron 35.0%
TATGACAAGACCTTAAGGAA+AGG - chr4_4:4386658-4386677 Msa0665080:intron 35.0%
GATCAAGAATTTGGGGATTT+AGG + chr4_4:4387032-4387051 None:intergenic 35.0%
!! ACCTTCAACTCACTTTTAGT+CGG + chr4_4:4387457-4387476 None:intergenic 35.0%
AAGGTAAAGTGATCTATGCT+CGG - chr4_4:4387472-4387491 Msa0665080:CDS 35.0%
AAAAAGGACATAAGGAGAGA+GGG + chr4_4:4387628-4387647 None:intergenic 35.0%
TTAATGTGGGTTTGATTCTG+TGG - chr4_4:4387698-4387717 Msa0665080:intron 35.0%
! CTGGCTTAAAAGTGTGTTTA+AGG - chr4_4:4387765-4387784 Msa0665080:intron 35.0%
!! CAATTGGAGCTTTTGATTCT+AGG - chr4_4:4387960-4387979 Msa0665080:intron 35.0%
!! TCTGACTAAAATTGAGTTGG+AGG - chr4_4:4388081-4388100 Msa0665080:intron 35.0%
!!! TGCACCTCTAGAATCAATTT+TGG + chr4_4:4388230-4388249 None:intergenic 35.0%
TCACAACAGAATCAAACACA+CGG + chr4_4:4388389-4388408 None:intergenic 35.0%
TAAGTTAGAATCAACTCTGG+AGG - chr4_4:4388557-4388576 Msa0665080:intron 35.0%
GGATGTTCTCTGGTATAATT+TGG + chr4_4:4388588-4388607 None:intergenic 35.0%
! CTCTAGAGAATTGATTCTAG+AGG + chr4_4:4388636-4388655 None:intergenic 35.0%
!! CTCTAGAATCAATTCTCTAG+AGG - chr4_4:4388634-4388653 Msa0665080:intron 35.0%
! CTAGAATCAATTCTCTAGAG+GGG - chr4_4:4388636-4388655 Msa0665080:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr4_4:4388732-4388751 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr4_4:4388731-4388750 Msa0665080:intron 35.0%
TCTAAAAAAAAAGGGCAACC+CGG + chr4_4:4388823-4388842 None:intergenic 35.0%
TTGGTTCCTGAAATTGTAGA+TGG - chr4_4:4388888-4388907 Msa0665080:intron 35.0%
! TATTCTGCATTAGAGGCTTT+TGG - chr4_4:4389096-4389115 Msa0665080:intron 35.0%
GCACATGTATAAGTGTTCAA+GGG + chr4_4:4389443-4389462 None:intergenic 35.0%
AGCACATGTATAAGTGTTCA+AGG + chr4_4:4389444-4389463 None:intergenic 35.0%
GCTTGGTAAAAAGTTTATCC+AGG + chr4_4:4389531-4389550 None:intergenic 35.0%
! CAACTTTTCTTTCAAAGGCT+TGG + chr4_4:4389548-4389567 None:intergenic 35.0%
!!! GCTCTCAAACTTTTTTCAAC+AGG - chr4_4:4389634-4389653 Msa0665080:intron 35.0%
! TTTGGAAGAAGTACAAGTCT+AGG - chr4_4:4389873-4389892 Msa0665080:intron 35.0%
CTTAGAATTTAGAAGAGGCT+TGG - chr4_4:4389909-4389928 Msa0665080:intron 35.0%
! GCATTTTGTCAAGCAATATG+TGG - chr4_4:4390300-4390319 Msa0665080:intron 35.0%
GTGGCTTTCCTTACAATTAT+TGG - chr4_4:4390319-4390338 Msa0665080:intron 35.0%
! AATGCATTGTCACTTACTGA+TGG - chr4_4:4390372-4390391 Msa0665080:intron 35.0%
ATAGAAAGGGATCTTAGCTT+TGG + chr4_4:4390553-4390572 None:intergenic 35.0%
AAAGCTAAGATCCCTTTCTA+TGG - chr4_4:4390552-4390571 Msa0665080:intron 35.0%
CAAGATTACCTTCCATAGAA+AGG + chr4_4:4390567-4390586 None:intergenic 35.0%
CTTTCTATGGAAGGTAATCT+TGG - chr4_4:4390565-4390584 Msa0665080:intron 35.0%
!!! TTTACCCTTTTTCTGAAGTG+TGG - chr4_4:4390650-4390669 Msa0665080:intron 35.0%
!!! TTACCCTTTTTCTGAAGTGT+GGG - chr4_4:4390651-4390670 Msa0665080:intron 35.0%
!!! GGCTTTTGATAATGAAGTCA+AGG - chr4_4:4390744-4390763 Msa0665080:intron 35.0%
GAAGTCAAGGTTATAGATGT+TGG - chr4_4:4390757-4390776 Msa0665080:intron 35.0%
ACGGATAATATTCCATGAGA+AGG - chr4_4:4390857-4390876 Msa0665080:intron 35.0%
CGGATAATATTCCATGAGAA+GGG - chr4_4:4390858-4390877 Msa0665080:intron 35.0%
GGATAATATTCCATGAGAAG+GGG - chr4_4:4390859-4390878 Msa0665080:intron 35.0%
AGTTGAATCTGAGTTCAAGA+TGG - chr4_4:4391074-4391093 Msa0665080:intron 35.0%
TGAGTTCAAGATGGTTAGAT+TGG - chr4_4:4391083-4391102 Msa0665080:intron 35.0%
TTTACTACTCTAGATACAGC+GGG + chr4_4:4391323-4391342 None:intergenic 35.0%
!! CACTCTGAAATTGTAGGTAT+CGG - chr4_4:4391354-4391373 Msa0665080:intron 35.0%
!! ACTCTGAAATTGTAGGTATC+GGG - chr4_4:4391355-4391374 Msa0665080:intron 35.0%
TACCCCTGAAATTTGTGAAT+AGG - chr4_4:4391384-4391403 Msa0665080:intron 35.0%
TGCCTATTCACAAATTTCAG+GGG + chr4_4:4391389-4391408 None:intergenic 35.0%
!!! GGTCCTTTTGTTAACTTGTA+TGG - chr4_4:4391444-4391463 Msa0665080:intron 35.0%
!! ACTTGTATGGACTAGTTTGA+CGG - chr4_4:4391457-4391476 Msa0665080:intron 35.0%
CCACCTTGAAATTTGCAAAT+AGG + chr4_4:4391507-4391526 None:intergenic 35.0%
CCTATTTGCAAATTTCAAGG+TGG - chr4_4:4391504-4391523 Msa0665080:intron 35.0%
! TCTAGGGAGTAATGACATTT+TGG - chr4_4:4391829-4391848 Msa0665080:intron 35.0%
! CTAGGGAGTAATGACATTTT+GGG - chr4_4:4391830-4391849 Msa0665080:intron 35.0%
! TTTTAACATTGCCGAGTTCA+AGG - chr4_4:4391914-4391933 Msa0665080:intron 35.0%
AAAAGGCTAGAACATTTGGT+AGG + chr4_4:4391960-4391979 None:intergenic 35.0%
ATAAAAGGGCAAGAAGACTA+AGG - chr4_4:4392004-4392023 Msa0665080:intron 35.0%
TAGCCAATTAAAAAACCCTG+TGG - chr4_4:4392034-4392053 Msa0665080:intron 35.0%
TAATCTATCACCAATCCACA+GGG + chr4_4:4392052-4392071 None:intergenic 35.0%
TTAATCTATCACCAATCCAC+AGG + chr4_4:4392053-4392072 None:intergenic 35.0%
CTTTATCCCAAGGATCTATT+TGG - chr4_4:4392161-4392180 Msa0665080:intron 35.0%
GAGAAATCCAAATAGATCCT+TGG + chr4_4:4392171-4392190 None:intergenic 35.0%
!!! TTCTTTATTTTTGCGGTGAG+GGG - chr4_4:4392216-4392235 Msa0665080:intron 35.0%
!! GACAACATAATGATGGACTA+TGG + chr4_4:4392248-4392267 None:intergenic 35.0%
TAGAGAAGCAAAGAGTTGTA+TGG + chr4_4:4392270-4392289 None:intergenic 35.0%
CCATATAGCTGCAAAGTAAT+AGG + chr4_4:4392335-4392354 None:intergenic 35.0%
CCTATTACTTTGCAGCTATA+TGG - chr4_4:4392332-4392351 Msa0665080:intron 35.0%
TAATTGTTGATACTAGTGGG+CGG - chr4_4:4392421-4392440 Msa0665080:intron 35.0%
!!! TATTAGAGACTACTGGCTTT+TGG + chr4_4:4392539-4392558 None:intergenic 35.0%
! AGATCTGGTTTCTGAATCAA+CGG + chr4_4:4392572-4392591 None:intergenic 35.0%
TTTGTCATGGATAGCAGTAT+TGG - chr4_4:4392599-4392618 Msa0665080:CDS 35.0%
CAACACTCTGTTTAAATGCT+TGG + chr4_4:4392646-4392665 None:intergenic 35.0%
!! TTTAAACAGAGTGTTGCAGT+TGG - chr4_4:4392650-4392669 Msa0665080:CDS 35.0%
TCCAGTTCCAATGAATATGA+CGG + chr4_4:4392915-4392934 None:intergenic 35.0%
! GTCTATTAGGTGTGTACTTT+TGG - chr4_4:4392984-4393003 Msa0665080:intron 35.0%
CATATCCTAAAACCAATGTC+GGG + chr4_4:4393017-4393036 None:intergenic 35.0%
GCATATCCTAAAACCAATGT+CGG + chr4_4:4393018-4393037 None:intergenic 35.0%
TATACATGCTTGAAAAGGTG+AGG + chr4_4:4393040-4393059 None:intergenic 35.0%
!!! TTTGGTTTTTGTCCCAACAT+TGG - chr4_4:4393064-4393083 Msa0665080:intron 35.0%
!!! TTTGTCCCAACATTGGTTTT+AGG - chr4_4:4393071-4393090 Msa0665080:intron 35.0%
CGTATCCTAAAACCAATGTT+GGG + chr4_4:4393079-4393098 None:intergenic 35.0%
CCGACTGGAGATTAATATAA+AGG + chr4_4:4393142-4393161 None:intergenic 35.0%
! TTAATCTCCAGTCGGTATTT+TGG - chr4_4:4393147-4393166 Msa0665080:intron 35.0%
AATCCATGAAGTTGTTCCAA+TGG - chr4_4:4393206-4393225 Msa0665080:intron 35.0%
GTACATAATCCTCAAGGTAA+AGG + chr4_4:4393271-4393290 None:intergenic 35.0%
! AAGTATTTTTCCACCAAGTG+GGG + chr4_4:4393396-4393415 None:intergenic 35.0%
!! CAAAGTATTTTTCCACCAAG+TGG + chr4_4:4393398-4393417 None:intergenic 35.0%
! CACTTGGTGGAAAAATACTT+TGG - chr4_4:4393396-4393415 Msa0665080:intron 35.0%
TTGGTGGAAAAATACTTTGG+TGG - chr4_4:4393399-4393418 Msa0665080:intron 35.0%
TCTCATTTGATGCACTAAAC+TGG - chr4_4:4393438-4393457 Msa0665080:intron 35.0%
ATTTGATGCACTAAACTGGA+TGG - chr4_4:4393442-4393461 Msa0665080:intron 35.0%
! GCTACTCTCTGATTTTCTTT+GGG - chr4_4:4393479-4393498 Msa0665080:intron 35.0%
! CTACTCTCTGATTTTCTTTG+GGG - chr4_4:4393480-4393499 Msa0665080:intron 35.0%
! TACTCTCTGATTTTCTTTGG+GGG - chr4_4:4393481-4393500 Msa0665080:intron 35.0%
! TTCTTTGGGGGACTAATTAA+TGG - chr4_4:4393493-4393512 Msa0665080:intron 35.0%
!!! TAGGTTTTTTCTATGCTACC+AGG - chr4_4:4393526-4393545 Msa0665080:intron 35.0%
! TTTTCTATGCTACCAGGATT+TGG - chr4_4:4393532-4393551 Msa0665080:intron 35.0%
! TGCCTTTTGGTACTAATTCA+TGG + chr4_4:4393558-4393577 None:intergenic 35.0%
TGAATTAGTACCAAAAGGCA+AGG - chr4_4:4393558-4393577 Msa0665080:intron 35.0%
! TGTAACGCTTAATTTTTGCC+TGG + chr4_4:4393594-4393613 None:intergenic 35.0%
TAAGCGTTACATGACAATGA+TGG - chr4_4:4393603-4393622 Msa0665080:intron 35.0%
ATGGACTCAATGACAAATGA+AGG - chr4_4:4393622-4393641 Msa0665080:intron 35.0%
AGGGCTTAAAATACCAAAGA+AGG - chr4_4:4393912-4393931 Msa0665080:intron 35.0%
GGGCTTAAAATACCAAAGAA+GGG - chr4_4:4393913-4393932 Msa0665080:intron 35.0%
GACATTCATGTTTCGAGATA+AGG + chr4_4:4393950-4393969 None:intergenic 35.0%
CTAAAGCAAATTGGAGGAAT+GGG - chr4_4:4394003-4394022 Msa0665080:intron 35.0%
ACAAAGCTTGATGAAATCGA+TGG - chr4_4:4394032-4394051 Msa0665080:intron 35.0%
CAAAGCTTGATGAAATCGAT+GGG - chr4_4:4394033-4394052 Msa0665080:intron 35.0%
GAAATCGATGGGATCTAATA+AGG - chr4_4:4394044-4394063 Msa0665080:intron 35.0%
GGATCTAATAAGGACATGAT+GGG - chr4_4:4394054-4394073 Msa0665080:intron 35.0%
CTGCCAAGGTAATTAACTAA+TGG + chr4_4:4394258-4394277 None:intergenic 35.0%
AAGAGTTTCTTCGATGCGAA+TGG + chr4_4:4385403-4385422 None:intergenic 40.0%
! AGCGAGTTGAATGTAACGAA+TGG - chr4_4:4385879-4385898 Msa0665080:CDS 40.0%
!!! CCCTATTTGGTTTGGGTTTT+AGG - chr4_4:4385929-4385948 Msa0665080:CDS 40.0%
ATTGCAACAAGATTCACTCG+TGG + chr4_4:4386234-4386253 None:intergenic 40.0%
!! CTTTTGAGGACCTTTCCTTA+AGG + chr4_4:4386671-4386690 None:intergenic 40.0%
! TTTGGGGATTTAGGGTTTGA+TGG + chr4_4:4387023-4387042 None:intergenic 40.0%
! AATCTTGATGATCTTGCTGC+TGG - chr4_4:4387254-4387273 Msa0665080:intron 40.0%
!! GAGGAAAAAGCGTTACTTGT+TGG + chr4_4:4387301-4387320 None:intergenic 40.0%
! TCCGACTAAAAGTGAGTTGA+AGG - chr4_4:4387453-4387472 Msa0665080:CDS 40.0%
GAAAAAGGACATAAGGAGAG+AGG + chr4_4:4387629-4387648 None:intergenic 40.0%
! GGAGCCAAAATTGATTCTAG+AGG - chr4_4:4388223-4388242 Msa0665080:intron 40.0%
!! GACATGTTTTGGATGTTCTC+TGG + chr4_4:4388598-4388617 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr4_4:4388725-4388744 Msa0665080:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr4_4:4388726-4388745 Msa0665080:intron 40.0%
CGTACTATACACCAAATGGT+GGG - chr4_4:4388757-4388776 Msa0665080:intron 40.0%
!! TACAATTTCAGGCACCGAAT+TGG - chr4_4:4389038-4389057 Msa0665080:intron 40.0%
!! ACAATTTCAGGCACCGAATT+GGG - chr4_4:4389039-4389058 Msa0665080:intron 40.0%
AAAAGAGTGAACCCCCAATT+CGG + chr4_4:4389055-4389074 None:intergenic 40.0%
GTACTTTGATCTATGAGGCA+TGG - chr4_4:4389185-4389204 Msa0665080:intron 40.0%
TGTAAGCTGTATTCGCAACA+TGG - chr4_4:4389355-4389374 Msa0665080:CDS 40.0%
GTAAGCTGTATTCGCAACAT+GGG - chr4_4:4389356-4389375 Msa0665080:CDS 40.0%
GACATGTCATACTCTACCTT+TGG - chr4_4:4389412-4389431 Msa0665080:intron 40.0%
GTTTATCCAGGCGAACTTTA+AGG + chr4_4:4389519-4389538 None:intergenic 40.0%
AGCATTCGTAAGCAAAAGAG+AGG + chr4_4:4389817-4389836 None:intergenic 40.0%
!! GTCATGTTCGTTGGTTTACA+AGG - chr4_4:4390135-4390154 Msa0665080:intron 40.0%
CTAAGATCCCTTTCTATGGA+AGG - chr4_4:4390556-4390575 Msa0665080:intron 40.0%
CTTCCCACACTTCAGAAAAA+GGG + chr4_4:4390657-4390676 None:intergenic 40.0%
ACTTCCCACACTTCAGAAAA+AGG + chr4_4:4390658-4390677 None:intergenic 40.0%
AAGTGTGGGAAGTGAAATGA+TGG - chr4_4:4390665-4390684 Msa0665080:intron 40.0%
! GAGTTAGTCAACTCCTTTTC+AGG - chr4_4:4390998-4391017 Msa0665080:intron 40.0%
CAAGGTGGTAATCCAAAATC+AGG - chr4_4:4391519-4391538 Msa0665080:intron 40.0%
AATTCATCCCCTGAAGTTGT+AGG + chr4_4:4391590-4391609 None:intergenic 40.0%
TACAACTTCAGGGGATGAAT+TGG - chr4_4:4391589-4391608 Msa0665080:intron 40.0%
ACAACTTCAGGGGATGAATT+GGG - chr4_4:4391590-4391609 Msa0665080:intron 40.0%
ACAACTGTACATGCTTCTTC+TGG + chr4_4:4391715-4391734 None:intergenic 40.0%
! GAGTTAGTCAACTCCTTTTC+AGG - chr4_4:4390998-4391017 Msa0665080:intron 40.0%
CTCCCTAGAAAACCAAAATG+TGG + chr4_4:4391031-4391050 None:intergenic 40.0%
! TTTGGGATAATGAATCACCG+TGG - chr4_4:4391858-4391877 Msa0665080:intron 40.0%
CCAAATATAGGCCTTGAACT+CGG + chr4_4:4391928-4391947 None:intergenic 40.0%
GGCAAGAAGACTAAGGAAAT+TGG - chr4_4:4392011-4392030 Msa0665080:intron 40.0%
AGATCCTGTGAAAATTGCTG+TGG - chr4_4:4392359-4392378 Msa0665080:intron 40.0%
TGAAGAAATGCGCCAAGTTT+CGG - chr4_4:4392467-4392486 Msa0665080:intron 40.0%
!! TGGCTTTTGGAAACAGACAT+TGG + chr4_4:4392526-4392545 None:intergenic 40.0%
AAAAATGGATGGCCATGCAA+AGG - chr4_4:4392688-4392707 Msa0665080:CDS 40.0%
AAAATGGATGGCCATGCAAA+GGG - chr4_4:4392689-4392708 Msa0665080:CDS 40.0%
AAGAGTCCCGTCATATTCAT+TGG - chr4_4:4392905-4392924 Msa0665080:intron 40.0%
CCAGTTCCAATGAATATGAC+GGG + chr4_4:4392914-4392933 None:intergenic 40.0%
CCTAATAGACGACTGACAAA+TGG + chr4_4:4392974-4392993 None:intergenic 40.0%
CCATTTGTCAGTCGTCTATT+AGG - chr4_4:4392971-4392990 Msa0665080:intron 40.0%
GCGTATCCTAAAACCAATGT+TGG + chr4_4:4393080-4393099 None:intergenic 40.0%
GATCCATTGGAACAACTTCA+TGG + chr4_4:4393212-4393231 None:intergenic 40.0%
TGCAGCTTATTAAGCAGTTC+AGG + chr4_4:4393240-4393259 None:intergenic 40.0%
CTGCTTAATAAGCTGCAAGA+AGG - chr4_4:4393243-4393262 Msa0665080:intron 40.0%
AAGAAGGAACCTTTACCTTG+AGG - chr4_4:4393259-4393278 Msa0665080:intron 40.0%
ATTTACATTTGACCCCCACT+TGG - chr4_4:4393380-4393399 Msa0665080:intron 40.0%
! AGTATTTTTCCACCAAGTGG+GGG + chr4_4:4393395-4393414 None:intergenic 40.0%
! GGCTACTCTCTGATTTTCTT+TGG - chr4_4:4393478-4393497 Msa0665080:intron 40.0%
ACTAATTCATGGCCAAATCC+TGG + chr4_4:4393547-4393566 None:intergenic 40.0%
GGCCATGAATTAGTACCAAA+AGG - chr4_4:4393553-4393572 Msa0665080:intron 40.0%
TTGCTATCGTGTTTCAGAGT+TGG - chr4_4:4393756-4393775 Msa0665080:intron 40.0%
GTGACTCATTCATGAGCTTT+GGG + chr4_4:4393792-4393811 None:intergenic 40.0%
CAAAGCTCATGAATGAGTCA+CGG - chr4_4:4393791-4393810 Msa0665080:intron 40.0%
TCGACAAGTTAGGGAAGTAA+TGG - chr4_4:4393840-4393859 Msa0665080:intron 40.0%
! TAGGGAAGTAATGGAGATGA+TGG - chr4_4:4393849-4393868 Msa0665080:intron 40.0%
GAACTCATTTCTCCCTTCTT+TGG + chr4_4:4393928-4393947 None:intergenic 40.0%
TTTGCTTTAGCATCTGTGGA+GGG + chr4_4:4393993-4394012 None:intergenic 40.0%
ATTTGCTTTAGCATCTGTGG+AGG + chr4_4:4393994-4394013 None:intergenic 40.0%
! CCAATTTGCTTTAGCATCTG+TGG + chr4_4:4393997-4394016 None:intergenic 40.0%
CCACAGATGCTAAAGCAAAT+TGG - chr4_4:4393994-4394013 Msa0665080:intron 40.0%
CAGATGCTAAAGCAAATTGG+AGG - chr4_4:4393997-4394016 Msa0665080:intron 40.0%
GCTAAAGCAAATTGGAGGAA+TGG - chr4_4:4394002-4394021 Msa0665080:intron 40.0%
GGGATCTAATAAGGACATGA+TGG - chr4_4:4394053-4394072 Msa0665080:intron 40.0%
! AAGGACATGATGGGAATGTT+TGG - chr4_4:4394063-4394082 Msa0665080:intron 40.0%
GAACTCTTATGAAGCACAAG+AGG + chr4_4:4394153-4394172 None:intergenic 40.0%
GGGCCATTAGTTAATTACCT+TGG - chr4_4:4394252-4394271 Msa0665080:intron 40.0%
TAAATCGAACTTCTCTCCAC+AGG - chr4_4:4394414-4394433 Msa0665080:intron 40.0%
AAGATGGTGCTCGCAGATTT+AGG - chr4_4:4385498-4385517 Msa0665080:three_prime_UTR 45.0%
! ACATTTTACCTCACCCAGAC+CGG - chr4_4:4385902-4385921 Msa0665080:CDS 45.0%
! CCAAACCAAATAGGGTACTC+CGG + chr4_4:4385924-4385943 None:intergenic 45.0%
! CGGAGTACCCTATTTGGTTT+GGG - chr4_4:4385922-4385941 Msa0665080:CDS 45.0%
GCAGAGATGGAACCTTCATT+AGG + chr4_4:4386400-4386419 None:intergenic 45.0%
AAGATGGTGCTCGCAGATTT+AGG - chr4_4:4385498-4385517 Msa0665080:three_prime_UTR 45.0%
! ATTCTCTAGAGGGGTAACCT+TGG - chr4_4:4388645-4388664 Msa0665080:intron 45.0%
GTTGTTGTCATGTGACCGTA+AGG - chr4_4:4388681-4388700 Msa0665080:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr4_4:4388721-4388740 None:intergenic 45.0%
GCTGCGTACTATACACCAAA+TGG - chr4_4:4388753-4388772 Msa0665080:intron 45.0%
GCGTACTATACACCAAATGG+TGG - chr4_4:4388756-4388775 Msa0665080:intron 45.0%
!! CAATTTCAGGCACCGAATTG+GGG - chr4_4:4389040-4389059 Msa0665080:intron 45.0%
!! AATTTCAGGCACCGAATTGG+GGG - chr4_4:4389041-4389060 Msa0665080:intron 45.0%
ATGCATCCTTAAAGTTCGCC+TGG - chr4_4:4389510-4389529 Msa0665080:intron 45.0%
!! CGTTGCCGTGTTTTTGTTAG+TGG - chr4_4:4389938-4389957 Msa0665080:intron 45.0%
!!! CCTTTTTTGGGAGTGAAAGC+AGG + chr4_4:4390102-4390121 None:intergenic 45.0%
CCTGCTTTCACTCCCAAAAA+AGG - chr4_4:4390099-4390118 Msa0665080:intron 45.0%
GCTAGTGTTGTCATGTTCGT+TGG - chr4_4:4390126-4390145 Msa0665080:intron 45.0%
GTATCTGCACATACTAGAGC+TGG + chr4_4:4390489-4390508 None:intergenic 45.0%
TGTGCAGATACATTCAGAGC+TGG - chr4_4:4390498-4390517 Msa0665080:intron 45.0%
TGTGGGAAGTGAAATGATGG+AGG - chr4_4:4390668-4390687 Msa0665080:intron 45.0%
CAACTTCAGGGGATGAATTG+GGG - chr4_4:4391591-4391610 Msa0665080:intron 45.0%
TAATGAATCACCGTGGACAG+TGG - chr4_4:4391865-4391884 Msa0665080:intron 45.0%
CCGAGTTCAAGGCCTATATT+TGG - chr4_4:4391925-4391944 Msa0665080:intron 45.0%
AGGAGGGGGAAACCAAATAT+AGG + chr4_4:4391940-4391959 None:intergenic 45.0%
CTAGAACATTTGGTAGGAGG+GGG + chr4_4:4391954-4391973 None:intergenic 45.0%
GCTAGAACATTTGGTAGGAG+GGG + chr4_4:4391955-4391974 None:intergenic 45.0%
GGCTAGAACATTTGGTAGGA+GGG + chr4_4:4391956-4391975 None:intergenic 45.0%
AGGCTAGAACATTTGGTAGG+AGG + chr4_4:4391957-4391976 None:intergenic 45.0%
!!! TTTATTTTTGCGGTGAGGGG+AGG - chr4_4:4392219-4392238 Msa0665080:intron 45.0%
! CCTTCCACAGCAATTTTCAC+AGG + chr4_4:4392366-4392385 None:intergenic 45.0%
CCTGTGAAAATTGCTGTGGA+AGG - chr4_4:4392363-4392382 Msa0665080:intron 45.0%
GAAAATTGCTGTGGAAGGTG+TGG - chr4_4:4392368-4392387 Msa0665080:intron 45.0%
ATACCGTTGCTTCCGAAACT+TGG + chr4_4:4392482-4392501 None:intergenic 45.0%
!! CATGGATAGCAGTATTGGTC+AGG - chr4_4:4392604-4392623 Msa0665080:CDS 45.0%
TATCACGACACAGCAAACAC+AGG + chr4_4:4392809-4392828 None:intergenic 45.0%
CCCGTCATATTCATTGGAAC+TGG - chr4_4:4392911-4392930 Msa0665080:intron 45.0%
CATTGGAACTGGAGAACACA+TGG - chr4_4:4392922-4392941 Msa0665080:intron 45.0%
! TTTGGTTTCTGTCCCGACAT+TGG - chr4_4:4393002-4393021 Msa0665080:intron 45.0%
!!! TCTGTCCCGACATTGGTTTT+AGG - chr4_4:4393009-4393028 Msa0665080:intron 45.0%
!! TCCAGTCGGTATTTTGGATC+AGG - chr4_4:4393153-4393172 Msa0665080:intron 45.0%
AGTTCAGGCTGTTGATCCAT+TGG + chr4_4:4393225-4393244 None:intergenic 45.0%
CTGCTCGTACATAATCCTCA+AGG + chr4_4:4393277-4393296 None:intergenic 45.0%
ACTGGATGGCTGTGTATTGA+AGG - chr4_4:4393456-4393475 Msa0665080:intron 45.0%
CTGGATGGCTGTGTATTGAA+GGG - chr4_4:4393457-4393476 Msa0665080:intron 45.0%
AGTACCAAAAGGCAAGGATC+AGG - chr4_4:4393564-4393583 Msa0665080:intron 45.0%
CGTGACTCATTCATGAGCTT+TGG + chr4_4:4393793-4393812 None:intergenic 45.0%
! AGGTTCTGGTCGACAAGTTA+GGG - chr4_4:4393831-4393850 Msa0665080:intron 45.0%
ACAAGCGTCTCGCAAAGATA+TGG - chr4_4:4393878-4393897 Msa0665080:intron 45.0%
AAGCAAATTGGAGGAATGGG+TGG - chr4_4:4394006-4394025 Msa0665080:intron 45.0%
AGCAAATTGGAGGAATGGGT+GGG - chr4_4:4394007-4394026 Msa0665080:intron 45.0%
! GACATGATGGGAATGTTTGG+CGG - chr4_4:4394066-4394085 Msa0665080:intron 45.0%
TCTGACCGCAGAAATCTCAA+TGG - chr4_4:4394231-4394250 Msa0665080:intron 45.0%
CTGACCGCAGAAATCTCAAT+GGG - chr4_4:4394232-4394251 Msa0665080:intron 45.0%
ATGGCCCATTGAGATTTCTG+CGG + chr4_4:4394239-4394258 None:intergenic 45.0%
TGAGTATGAACCTTCTCCTG+TGG + chr4_4:4394433-4394452 None:intergenic 45.0%
!!! GATTTTATTTTATTTTTTTA+GGG + chr4_4:4386845-4386864 None:intergenic 5.0%
!!! AGATTTTATTTTATTTTTTT+AGG + chr4_4:4386846-4386865 None:intergenic 5.0%
!!! TTCAATTTTTTTATTTAATT+TGG - chr4_4:4387325-4387344 Msa0665080:intron 5.0%
!! AAATTATATTAAACATAATA+GGG + chr4_4:4393343-4393362 None:intergenic 5.0%
!! TAAATTATATTAAACATAAT+AGG + chr4_4:4393344-4393363 None:intergenic 5.0%
!!! TTTTTATTTTTTGTATTATT+TGG - chr4_4:4393670-4393689 Msa0665080:intron 5.0%
!!! TTTTATTTTTTGTATTATTT+GGG - chr4_4:4393671-4393690 Msa0665080:intron 5.0%
ATGGTGCTCGCAGATTTAGG+AGG - chr4_4:4385501-4385520 Msa0665080:three_prime_UTR 50.0%
TGGTGCTCGCAGATTTAGGA+GGG - chr4_4:4385502-4385521 Msa0665080:three_prime_UTR 50.0%
! CAAATAGGGTACTCCGGTCT+GGG + chr4_4:4385918-4385937 None:intergenic 50.0%
! CCGGAGTACCCTATTTGGTT+TGG - chr4_4:4385921-4385940 Msa0665080:CDS 50.0%
! ATGAAGGGGTGTACGTAGGT+CGG + chr4_4:4385976-4385995 None:intergenic 50.0%
! AGAGATGAAGGGGTGTACGT+AGG + chr4_4:4385980-4385999 None:intergenic 50.0%
GCAACAAGATTCACTCGTGG+TGG + chr4_4:4386231-4386250 None:intergenic 50.0%
GAGGTGCAATTCAGCAGAGA+TGG + chr4_4:4386413-4386432 None:intergenic 50.0%
ATGGTGCTCGCAGATTTAGG+AGG - chr4_4:4385501-4385520 Msa0665080:three_prime_UTR 50.0%
TGGTGCTCGCAGATTTAGGA+GGG - chr4_4:4385502-4385521 Msa0665080:three_prime_UTR 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr4_4:4388665-4388684 None:intergenic 50.0%
GTCATGTGACCGTAAGGTCA+CGG - chr4_4:4388687-4388706 Msa0665080:intron 50.0%
TCATGTGACCGTAAGGTCAC+GGG - chr4_4:4388688-4388707 Msa0665080:intron 50.0%
GACTTGAACCCGTGACCTTA+CGG + chr4_4:4388699-4388718 None:intergenic 50.0%
AGCTGTATTCGCAACATGGG+AGG - chr4_4:4389359-4389378 Msa0665080:CDS 50.0%
GTGTTCAAGGGAGCTTCCAA+AGG + chr4_4:4389431-4389450 None:intergenic 50.0%
AATGAATCGGCCCCTTCTCA+TGG + chr4_4:4390872-4390891 None:intergenic 50.0%
! GAGAAGGGGCCGATTCATTT+CGG - chr4_4:4390873-4390892 Msa0665080:intron 50.0%
! GACCCGATTTTGAATGGCGA+CGG - chr4_4:4391414-4391433 Msa0665080:intron 50.0%
! ACCCGATTTTGAATGGCGAC+GGG - chr4_4:4391415-4391434 Msa0665080:intron 50.0%
TGCCCGTCGCCATTCAAAAT+CGG + chr4_4:4391420-4391439 None:intergenic 50.0%
!!! TGGTCAGGCTGCTTTTGATC+AGG - chr4_4:4392619-4392638 Msa0665080:CDS 50.0%
GCCTGATCCAAAATACCGAC+TGG + chr4_4:4393157-4393176 None:intergenic 50.0%
!! TCGGTATTTTGGATCAGGCC+AGG - chr4_4:4393158-4393177 Msa0665080:intron 50.0%
!! CGGTATTTTGGATCAGGCCA+GGG - chr4_4:4393159-4393178 Msa0665080:intron 50.0%
TACATTTGACCCCCACTTGG+TGG - chr4_4:4393383-4393402 Msa0665080:intron 50.0%
! CTGTCCTGATCCTTGCCTTT+TGG + chr4_4:4393571-4393590 None:intergenic 50.0%
ATGCGTATAGCTCGAGGTTC+TGG - chr4_4:4393817-4393836 Msa0665080:intron 50.0%
! GAGGTTCTGGTCGACAAGTT+AGG - chr4_4:4393830-4393849 Msa0665080:intron 50.0%
! GAGGGAGGATTTTGCTCATG+TGG + chr4_4:4393975-4393994 None:intergenic 50.0%
! ATGATGGGAATGTTTGGCGG+CGG - chr4_4:4394069-4394088 Msa0665080:intron 50.0%
GGCGAGCAGTAGGTTCTTAA+TGG - chr4_4:4394093-4394112 Msa0665080:intron 50.0%
GAACTTCTCTCCACAGGAGA+AGG - chr4_4:4394420-4394439 Msa0665080:intron 50.0%
! CCAAATAGGGTACTCCGGTC+TGG + chr4_4:4385919-4385938 None:intergenic 55.0%
! CCAGACCGGAGTACCCTATT+TGG - chr4_4:4385916-4385935 Msa0665080:CDS 55.0%
! GGGTGTACGTAGGTCGGTTT+GGG + chr4_4:4385970-4385989 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr4_4:4388700-4388719 Msa0665080:intron 55.0%
CTGAAGCTCCCGCATATGCA+GGG + chr4_4:4388796-4388815 None:intergenic 55.0%
ACTGAAGCTCCCGCATATGC+AGG + chr4_4:4388797-4388816 None:intergenic 55.0%
GGAGTGAAAGCAGGCTTTCC+AGG + chr4_4:4390093-4390112 None:intergenic 55.0%
GCCCGTCGCCATTCAAAATC+GGG + chr4_4:4391419-4391438 None:intergenic 55.0%
TTGAATGGCGACGGGCAGTT+TGG - chr4_4:4391423-4391442 Msa0665080:intron 55.0%
TGTCCGACGCCTACAACTTC+AGG - chr4_4:4391578-4391597 Msa0665080:intron 55.0%
GTCCGACGCCTACAACTTCA+GGG - chr4_4:4391579-4391598 Msa0665080:intron 55.0%
TCCGACGCCTACAACTTCAG+GGG - chr4_4:4391580-4391599 Msa0665080:intron 55.0%
TCCCCTGAAGTTGTAGGCGT+CGG + chr4_4:4391584-4391603 None:intergenic 55.0%
CACAGTCTCACCACTGTCCA+CGG + chr4_4:4391878-4391897 None:intergenic 55.0%
GCGCCAAGTTTCGGAAGCAA+CGG - chr4_4:4392476-4392495 Msa0665080:intron 55.0%
ATGGATGGCCATGCAAAGGG+TGG - chr4_4:4392692-4392711 Msa0665080:CDS 55.0%
TGAACCCAGACAAGTCTCCC+TGG + chr4_4:4393179-4393198 None:intergenic 55.0%
TAAGATGGGTCCCATGAGCG+AGG - chr4_4:4393311-4393330 Msa0665080:intron 55.0%
AGGGGGTTAACCTCGCTCAT+GGG + chr4_4:4393324-4393343 None:intergenic 55.0%
TAGGGGGTTAACCTCGCTCA+TGG + chr4_4:4393325-4393344 None:intergenic 55.0%
CGGATGATGCGTATAGCTCG+AGG - chr4_4:4393811-4393830 Msa0665080:intron 55.0%
GCTTTAGCATCTGTGGAGGG+AGG + chr4_4:4393990-4394009 None:intergenic 55.0%
TAATGGCTTATGCGCTGCCG+AGG - chr4_4:4394110-4394129 Msa0665080:intron 55.0%
GGGGTGTACGTAGGTCGGTT+TGG + chr4_4:4385971-4385990 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr4_4:4388654-4388673 Msa0665080:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr4_4:4388769-4388788 Msa0665080:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr4_4:4388784-4388803 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr4_4:4388785-4388804 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr4_4:4388784-4388803 Msa0665080:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr4_4:4388785-4388804 Msa0665080:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr4_4:4388801-4388820 Msa0665080:intron 60.0%
CGTGGACAGTGGTGAGACTG+TGG - chr4_4:4391876-4391895 Msa0665080:intron 60.0%
GATGGCCATGCAAAGGGTGG+TGG - chr4_4:4392695-4392714 Msa0665080:CDS 60.0%
TCAGGCCAGGGAGACTTGTC+TGG - chr4_4:4393171-4393190 Msa0665080:intron 60.0%
CAGGCCAGGGAGACTTGTCT+GGG - chr4_4:4393172-4393191 Msa0665080:intron 60.0%
AGGCAAGGATCAGGACAGCC+AGG - chr4_4:4393573-4393592 Msa0665080:intron 60.0%
ATGGGAATGTTTGGCGGCGG+TGG - chr4_4:4394072-4394091 Msa0665080:intron 60.0%
! AGGGTACTCCGGTCTGGGTG+AGG + chr4_4:4385913-4385932 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr4_4:4388771-4388790 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr4_4:4388786-4388805 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr4_4:4388790-4388809 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr4_4:4388791-4388810 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr4_4:4388802-4388821 Msa0665080:intron 65.0%
GCGCACCACCACCCTTTGCA+TGG + chr4_4:4392703-4392722 None:intergenic 65.0%
TGGCGGCGGTGGCGAGCAGT+AGG - chr4_4:4394083-4394102 Msa0665080:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 4385384 4394454 4385384 ID=Msa0665080;Name=Msa0665080
chr4_4 mRNA 4385384 4394454 4385384 ID=Msa0665080-mRNA-1;Parent=Msa0665080;Name=Msa0665080-mRNA-1;_AED=0.14;_eAED=0.14;_QI=119|1|1|1|0.88|0.8|10|350|496
chr4_4 exon 4385384 4386065 4385384 ID=Msa0665080-mRNA-1:exon:1507;Parent=Msa0665080-mRNA-1
chr4_4 exon 4386195 4386309 4386195 ID=Msa0665080-mRNA-1:exon:1506;Parent=Msa0665080-mRNA-1
chr4_4 exon 4386506 4386663 4386506 ID=Msa0665080-mRNA-1:exon:1505;Parent=Msa0665080-mRNA-1
chr4_4 exon 4386846 4386946 4386846 ID=Msa0665080-mRNA-1:exon:1504;Parent=Msa0665080-mRNA-1
chr4_4 exon 4387109 4387257 4387109 ID=Msa0665080-mRNA-1:exon:1503;Parent=Msa0665080-mRNA-1
chr4_4 exon 4387341 4387491 4387341 ID=Msa0665080-mRNA-1:exon:1502;Parent=Msa0665080-mRNA-1
chr4_4 exon 4389261 4389414 4389261 ID=Msa0665080-mRNA-1:exon:1501;Parent=Msa0665080-mRNA-1
chr4_4 exon 4389682 4389781 4389682 ID=Msa0665080-mRNA-1:exon:1500;Parent=Msa0665080-mRNA-1
chr4_4 exon 4392534 4392855 4392534 ID=Msa0665080-mRNA-1:exon:1499;Parent=Msa0665080-mRNA-1
chr4_4 exon 4394427 4394454 4394427 ID=Msa0665080-mRNA-1:exon:1498;Parent=Msa0665080-mRNA-1
chr4_4 five_prime_UTR 4394427 4394454 4394427 ID=Msa0665080-mRNA-1:five_prime_utr;Parent=Msa0665080-mRNA-1
chr4_4 five_prime_UTR 4392765 4392855 4392765 ID=Msa0665080-mRNA-1:five_prime_utr;Parent=Msa0665080-mRNA-1
chr4_4 CDS 4392534 4392764 4392534 ID=Msa0665080-mRNA-1:cds;Parent=Msa0665080-mRNA-1
chr4_4 CDS 4389682 4389781 4389682 ID=Msa0665080-mRNA-1:cds;Parent=Msa0665080-mRNA-1
chr4_4 CDS 4389261 4389414 4389261 ID=Msa0665080-mRNA-1:cds;Parent=Msa0665080-mRNA-1
chr4_4 CDS 4387341 4387491 4387341 ID=Msa0665080-mRNA-1:cds;Parent=Msa0665080-mRNA-1
chr4_4 CDS 4387109 4387257 4387109 ID=Msa0665080-mRNA-1:cds;Parent=Msa0665080-mRNA-1
chr4_4 CDS 4386846 4386946 4386846 ID=Msa0665080-mRNA-1:cds;Parent=Msa0665080-mRNA-1
chr4_4 CDS 4386506 4386663 4386506 ID=Msa0665080-mRNA-1:cds;Parent=Msa0665080-mRNA-1
chr4_4 CDS 4386195 4386309 4386195 ID=Msa0665080-mRNA-1:cds;Parent=Msa0665080-mRNA-1
chr4_4 CDS 4385734 4386065 4385734 ID=Msa0665080-mRNA-1:cds;Parent=Msa0665080-mRNA-1
chr4_4 three_prime_UTR 4385384 4385733 4385384 ID=Msa0665080-mRNA-1:three_prime_utr;Parent=Msa0665080-mRNA-1
Gene Sequence

>Msa0665080

ATGGTGCTCGCAGATTTAGGAGGGAGCATTACGCGTGCTCTAAAGCAGATGAGCAATGCAACAATCATCGATGAAAAAGTATTGAACGAATGTCTCAATGAAATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTTGTTAGAGATATGCAAACCAATATTAAGAAGATTGTTAATCTTGATGATCTTGCTGCTGGTCATAATAAACGTAGAATCATCCAACAAGCTGTGTTCAATGAGCTCTGCAATATCTTGGATCCTGGAAAGCCTGCTTTCACTCCCAAAAAAGGAAAAGCTAGTGTTGTCATGTTCGTTGGTTTACAAGGATCTGGGAAAACCACTACTTGTACAAAATATGCATTTTATCATCAAAAGAAAGGCTGGAAGCCAGCTCTAGTATGTGCAGATACATTCAGAGCTGGTGCGTTTGATCAGTTGAAGCAAAATGCAACCAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCTGTGGAAGGTGTGGAAAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATCTTTGTCATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTAATTATCACAAAAATGGATGGCCATGCAAAGGGTGGTGGTGCGCTTAGTGCTGTTGCGGCTACAAAGAGTCCCGTCATATTCATTGGAACTGGAGAACACATGGATGAATTTGAAGTTTTTGATGTTAAACCATTTGTCAGTCGTCTATTAGGCCAGGGAGACTTGTCTGGGTTCATGAACAAAATCCATGAAGTTGTTCCAATGGATCAACAGCCTGAACTGCTTAATAAGCTGCAAGAAGGAACCTTTACCTTGAGGATTATGTACGAGCAGTTTCAGAATATTCTTAAGATGGGTCCCATGAGCGAGGTTTTTTCTATGCTACCAGGATTTGGCCATGAATTAGTACCAAAAGGCAAGGATCAGGACAGCCAGGCAAAAATTAAGCGTTACATGACAATGATGGACTCAATGACAAATGAAGAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAGTCACGGATGATGCGTATAGCTCGAGGTTCTGGTCGACAAGTTAGGGAAGTAATGGAGATGATGGAAGAGTACAAGCGTCTCGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAGGGAGAAATGAGTTCCTTATCTCGAAACATGAATGTCAACCACATGAGCAAAATCCTCCCTCCACAGATGCTAAAGCAAATTGGAGGAATGGGTGGGTTACAAAGCTTGATGAAATCGATGGGATCTAATAAGGACATGATGGGAATGTTTGGCGGCGGTGGCGAGCAGTAG

Protein sequence

>Msa0665080

MVLADLGGSITRALKQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCNILDPGKPAFTPKKGKASVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGQGDLSGFMNKIHEVVPMDQQPELLNKLQEGTFTLRIMYEQFQNILKMGPMSEVFSMLPGFGHELVPKGKDQDSQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRQVREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSSLSRNMNVNHMSKILPPQMLKQIGGMGGLQSLMKSMGSNKDMMGMFGGGGEQ*