Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768230 | sp|Q9C9G4|ENDO2_ARATH | 59.507 | 284 | 101 | 7 | 7 | 279 | 9 | 289 | 1.76e-112 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768230 | G7K0J9 | 90.878 | 296 | 20 | 2 | 1 | 289 | 1 | 296 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa0768230 | 0.804406 | 2.193207e-49 | -8.615850e-47 |
| Msa0661650 | Msa0768230 | 0.818677 | 1.730594e-52 | -8.615850e-47 |
| Msa0679290 | Msa0768230 | -0.814811 | 1.274076e-51 | -8.615850e-47 |
| Msa0711150 | Msa0768230 | 0.801163 | 1.024888e-48 | -8.615850e-47 |
| Msa0753720 | Msa0768230 | 0.805147 | 1.536336e-49 | -8.615850e-47 |
| Msa0755180 | Msa0768230 | 0.803938 | 2.745519e-49 | -8.615850e-47 |
| Msa0768230 | Msa0768370 | 0.801039 | 1.086678e-48 | -8.615850e-47 |
| Msa0768230 | Msa0831850 | 0.800455 | 1.429877e-48 | -8.615850e-47 |
| Msa0768230 | Msa0844490 | 0.805407 | 1.354829e-49 | -8.615850e-47 |
| Msa0768230 | Msa0897330 | 0.806206 | 9.207882e-50 | -8.615850e-47 |
| Msa0768230 | Msa0915840 | 0.807594 | 4.684600e-50 | -8.615850e-47 |
| Msa0768230 | Msa0927310 | 0.810657 | 1.033698e-50 | -8.615850e-47 |
| Msa0768230 | Msa0969810 | 0.811287 | 7.551013e-51 | -8.615850e-47 |
| Msa0768230 | Msa0974070 | 0.805282 | 1.439410e-49 | -8.615850e-47 |
| Msa0768230 | Msa0974080 | 0.824007 | 1.019013e-53 | -8.615850e-47 |
| Msa0768230 | Msa1000890 | 0.805189 | 1.505575e-49 | -8.615850e-47 |
| Msa0768230 | Msa1000900 | 0.806584 | 7.664367e-50 | -8.615850e-47 |
| Msa0768230 | Msa1016320 | 0.801876 | 7.322395e-49 | -8.615850e-47 |
| Msa0768230 | Msa1048220 | 0.808913 | 2.451255e-50 | -8.615850e-47 |
| Msa0768230 | Msa1104090 | 0.800948 | 1.134234e-48 | -8.615850e-47 |
| Msa0768230 | Msa1111870 | 0.804610 | 1.989373e-49 | -8.615850e-47 |
| Msa0768230 | Msa1113170 | 0.805808 | 1.116396e-49 | -8.615850e-47 |
| Msa0768230 | Msa1120610 | 0.807961 | 3.912733e-50 | -8.615850e-47 |
| Msa0768230 | Msa1121480 | 0.811564 | 6.572867e-51 | -8.615850e-47 |
| Msa0768230 | Msa1121490 | 0.826241 | 3.022819e-54 | -8.615850e-47 |
| Msa0768230 | Msa1162780 | 0.822260 | 2.604962e-53 | -8.615850e-47 |
| Msa0768230 | Msa1185110 | 0.807628 | 4.606014e-50 | -8.615850e-47 |
| Msa0768230 | Msa1210110 | 0.808167 | 3.537572e-50 | -8.615850e-47 |
| Msa0768230 | Msa1302850 | 0.812154 | 4.889963e-51 | -8.615850e-47 |
| Msa0768230 | Msa1358670 | 0.811513 | 6.742862e-51 | -8.615850e-47 |
| Msa0768230 | Msa1383100 | 0.812994 | 3.203714e-51 | -8.615850e-47 |
| Msa0768230 | Msa1410680 | 0.820464 | 6.764885e-53 | -8.615850e-47 |
| Msa0768230 | Msa1414520 | 0.802430 | 5.632597e-49 | -8.615850e-47 |
| Msa0768230 | Msa1457160 | 0.816019 | 6.862741e-52 | -8.615850e-47 |
| Msa0138020 | Msa0768230 | 0.809563 | 1.778587e-50 | -8.615850e-47 |
| Msa0193470 | Msa0768230 | 0.820543 | 6.487395e-53 | -8.615850e-47 |
| Msa0229590 | Msa0768230 | 0.802589 | 5.222460e-49 | -8.615850e-47 |
| Msa0367870 | Msa0768230 | 0.813687 | 2.256500e-51 | -8.615850e-47 |
| Msa0372340 | Msa0768230 | 0.800549 | 1.367875e-48 | -8.615850e-47 |
| Msa0435690 | Msa0768230 | 0.801700 | 7.955285e-49 | -8.615850e-47 |
| Msa0267370 | Msa0768230 | 0.820675 | 6.051966e-53 | -8.615850e-47 |
| Msa0283910 | Msa0768230 | 0.840319 | 9.338099e-58 | -8.615850e-47 |
| Msa0285450 | Msa0768230 | 0.817749 | 2.806320e-52 | -8.615850e-47 |
| Msa0296480 | Msa0768230 | 0.821151 | 4.703479e-53 | -8.615850e-47 |
| Msa0305190 | Msa0768230 | 0.805697 | 1.177894e-49 | -8.615850e-47 |
| Msa0340450 | Msa0768230 | 0.804083 | 2.561061e-49 | -8.615850e-47 |
| Msa0363790 | Msa0768230 | 0.807301 | 5.403964e-50 | -8.615850e-47 |
| Msa0512750 | Msa0768230 | 0.829996 | 3.765349e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768230 | MtrunA17_Chr5g0423351 | 90.878 | 296 | 20 | 2 | 1 | 289 | 1 | 296 | 0.0 | 556 |
| Msa0768230 | MtrunA17_Chr5g0423341 | 77.365 | 296 | 58 | 3 | 1 | 289 | 1 | 294 | 3.86e-168 | 467 |
| Msa0768230 | MtrunA17_Chr1g0209691 | 67.483 | 286 | 83 | 4 | 1 | 279 | 1 | 283 | 9.50e-138 | 390 |
| Msa0768230 | MtrunA17_Chr4g0048061 | 57.609 | 276 | 105 | 5 | 24 | 288 | 64 | 338 | 6.66e-106 | 311 |
| Msa0768230 | MtrunA17_Chr2g0281321 | 46.743 | 261 | 123 | 6 | 31 | 281 | 1 | 255 | 1.06e-77 | 237 |
| Msa0768230 | MtrunA17_Chr1g0170511 | 56.489 | 131 | 51 | 4 | 24 | 149 | 27 | 156 | 4.79e-41 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768230 | AT1G68290.1 | 59.507 | 284 | 101 | 7 | 7 | 279 | 9 | 289 | 1.79e-113 | 329 |
| Msa0768230 | AT4G21585.4 | 53.472 | 288 | 119 | 6 | 15 | 288 | 13 | 299 | 1.63e-100 | 296 |
| Msa0768230 | AT4G21585.1 | 53.472 | 288 | 119 | 6 | 15 | 288 | 13 | 299 | 1.63e-100 | 296 |
| Msa0768230 | AT4G21590.1 | 52.069 | 290 | 119 | 6 | 11 | 286 | 9 | 292 | 3.88e-98 | 290 |
| Msa0768230 | AT4G21590.2 | 52.069 | 290 | 119 | 6 | 11 | 286 | 9 | 292 | 3.88e-98 | 290 |
| Msa0768230 | AT4G21585.3 | 48.726 | 314 | 120 | 6 | 15 | 288 | 13 | 325 | 4.74e-95 | 283 |
| Msa0768230 | AT4G21585.6 | 48.734 | 316 | 119 | 7 | 15 | 288 | 13 | 327 | 3.47e-94 | 281 |
| Msa0768230 | AT4G21600.1 | 48.454 | 291 | 134 | 7 | 11 | 286 | 5 | 294 | 1.50e-89 | 268 |
| Msa0768230 | AT1G11190.1 | 47.143 | 280 | 135 | 7 | 18 | 286 | 23 | 300 | 1.58e-86 | 261 |
| Msa0768230 | AT4G21585.2 | 44.800 | 250 | 103 | 5 | 15 | 230 | 13 | 261 | 1.90e-67 | 211 |
| Msa0768230 | AT4G21585.5 | 44.800 | 250 | 103 | 5 | 15 | 230 | 13 | 261 | 1.90e-67 | 211 |
Find 62 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCATTGTTTGCAGATTC+TGG | 0.203012 | 5_2:+33108588 | None:intergenic |
| TCTCCTGCAAACAGAAAGTA+TGG | 0.250152 | 5_2:-33106760 | Msa0768230:intron |
| ATCTTTATATGCCCATTTAC+AGG | 0.255935 | 5_2:+33106304 | None:intergenic |
| AGATCAGAAAACTGGAATTA+AGG | 0.262022 | 5_2:-33107661 | Msa0768230:CDS |
| GTAGCGTAGACGCCTGTAAA+TGG | 0.270306 | 5_2:-33106316 | Msa0768230:intron |
| ACCAACCAGCTCCTCGATTA+TGG | 0.300284 | 5_2:-33107606 | Msa0768230:CDS |
| GATCAGAAAACTGGAATTAA+GGG | 0.317310 | 5_2:-33107660 | Msa0768230:CDS |
| TAAAATGTGAAAGGAAATAA+AGG | 0.321153 | 5_2:+33107431 | None:intergenic |
| CCCATCTTCTCCCCATTCAT+TGG | 0.328273 | 5_2:+33109041 | None:intergenic |
| AGTTGGAATGAGAGAGTTAG+AGG | 0.368487 | 5_2:-33106027 | Msa0768230:three_prime_UTR |
| TTTAGTGAAATAACAATAGT+TGG | 0.370678 | 5_2:-33106044 | Msa0768230:three_prime_UTR |
| GTGAAAGGAAATAAAGGGCT+TGG | 0.393947 | 5_2:+33107437 | None:intergenic |
| ATTTATCTAGCAAGTGTTCA+TGG | 0.394091 | 5_2:-33108569 | Msa0768230:CDS |
| GATTGTAAAGATCAGAAAAC+TGG | 0.404647 | 5_2:-33107669 | Msa0768230:CDS |
| CAAAAGCATAAATGAAACTA+TGG | 0.410031 | 5_2:+33109074 | None:intergenic |
| GATTCAATACACCAATGAAT+GGG | 0.411561 | 5_2:-33109052 | Msa0768230:CDS |
| TGATTCAATACACCAATGAA+TGG | 0.413879 | 5_2:-33109053 | Msa0768230:CDS |
| ACCAATGAATGGGGAGAAGA+TGG | 0.423291 | 5_2:-33109042 | Msa0768230:CDS |
| TAGCGTAGACGCCTGTAAAT+GGG | 0.468004 | 5_2:-33106315 | Msa0768230:CDS |
| TTGTAATCGCAAACATAGTC+AGG | 0.468893 | 5_2:+33108489 | None:intergenic |
| GATGTTGATTGTAAGACAAA+AGG | 0.469158 | 5_2:-33106004 | Msa0768230:three_prime_UTR |
| TGCAATTCAAGAAAATATTA+CGG | 0.473579 | 5_2:-33106875 | Msa0768230:intron |
| TGAAAGGAAATAAAGGGCTT+GGG | 0.478954 | 5_2:+33107438 | None:intergenic |
| GGAAATAAAGGGCTTGGGTA+AGG | 0.488355 | 5_2:+33107443 | None:intergenic |
| ACTAATAGAGTAAAGTACTA+TGG | 0.493858 | 5_2:-33109121 | Msa0768230:exon |
| CATTGTTTGTAAGATTGCTC+AGG | 0.497846 | 5_2:-33109013 | Msa0768230:intron |
| ATGTGAGGTTTATCTATCCT+TGG | 0.499257 | 5_2:-33108539 | Msa0768230:CDS |
| GGGCTAAAGAAGTCGAAGAA+TGG | 0.502003 | 5_2:-33106739 | Msa0768230:CDS |
| CACTGCCATAATCGAGGAGC+TGG | 0.502304 | 5_2:+33107601 | None:intergenic |
| GCAATGAAATAACTGTTCAT+TGG | 0.502502 | 5_2:-33107272 | Msa0768230:CDS |
| ATTAAGGGGCGATGTGTTGT+GGG | 0.504054 | 5_2:-33107645 | Msa0768230:CDS |
| GGCTAAAGAAGTCGAAGAAT+GGG | 0.505630 | 5_2:-33106738 | Msa0768230:CDS |
| AAAATGTGAAAGGAAATAAA+GGG | 0.515292 | 5_2:+33107432 | None:intergenic |
| AATTAAGGGGCGATGTGTTG+TGG | 0.528844 | 5_2:-33107646 | Msa0768230:CDS |
| TGTGGCTTTGTCTCAGACAA+AGG | 0.531495 | 5_2:-33107297 | Msa0768230:CDS |
| GTTGGAATGAGAGAGTTAGA+GGG | 0.537450 | 5_2:-33106026 | Msa0768230:three_prime_UTR |
| ATAAATGAAACTATGGTCAC+TGG | 0.538215 | 5_2:+33109081 | None:intergenic |
| GCGAATGGAACATACATGGA+TGG | 0.539178 | 5_2:+33106686 | None:intergenic |
| ACTTAGCGAGGCAGCTGCAA+AGG | 0.541239 | 5_2:-33108628 | Msa0768230:CDS |
| AGCTCAAGGAGGAGTTCGAT+TGG | 0.552862 | 5_2:-33106123 | Msa0768230:CDS |
| TGACGATAGGAAGACGTGAC+AGG | 0.552963 | 5_2:+33106156 | None:intergenic |
| TCTGAAGGCTCAACACTCAA+AGG | 0.561237 | 5_2:-33106278 | Msa0768230:intron |
| TTTATCTAGCAAGTGTTCAT+GGG | 0.562069 | 5_2:-33108568 | Msa0768230:CDS |
| AAATTCTATGACTTAGAGCT+AGG | 0.566926 | 5_2:-33106910 | Msa0768230:CDS |
| CGAATGGAACATACATGGAT+GGG | 0.569051 | 5_2:+33106687 | None:intergenic |
| GCCATAATCGAGGAGCTGGT+TGG | 0.571467 | 5_2:+33107605 | None:intergenic |
| TGTCTCCCATAAAATGTGAA+AGG | 0.584972 | 5_2:+33107422 | None:intergenic |
| GTCAATCTGCGATTAGCTCA+AGG | 0.593415 | 5_2:-33106137 | Msa0768230:CDS |
| CCAATGAATGGGGAGAAGAT+GGG | 0.617876 | 5_2:-33109041 | Msa0768230:CDS |
| ATTCAATACACCAATGAATG+GGG | 0.621732 | 5_2:-33109051 | Msa0768230:CDS |
| GTTCATGGGCAGATCATGTG+AGG | 0.627592 | 5_2:-33108554 | Msa0768230:CDS |
| GAGACAAAGCCACAATGTAG+AGG | 0.631748 | 5_2:+33107306 | None:intergenic |
| GCATATAAAGATGCATCTGA+AGG | 0.632248 | 5_2:-33106293 | Msa0768230:CDS |
| TATATGCAGCCTCTACATTG+TGG | 0.633231 | 5_2:-33107315 | Msa0768230:intron |
| ATCAGAAAACTGGAATTAAG+GGG | 0.638877 | 5_2:-33107659 | Msa0768230:CDS |
| CTCCTGCAAACAGAAAGTAT+GGG | 0.644964 | 5_2:-33106759 | Msa0768230:intron |
| AGAACAGGCTCGACTTAGCG+AGG | 0.646000 | 5_2:-33108640 | Msa0768230:intron |
| TTATGGCACTGCCATAATCG+AGG | 0.653840 | 5_2:+33107595 | None:intergenic |
| GGCTTTGTCTCAGACAAAGG+AGG | 0.657039 | 5_2:-33107294 | Msa0768230:CDS |
| AAGTGCAAAGCAGACGACCA+AGG | 0.658164 | 5_2:+33108522 | None:intergenic |
| GCTAATCGCAGATTGACGAT+AGG | 0.663108 | 5_2:+33106143 | None:intergenic |
| AATCTGCGATTAGCTCAAGG+AGG | 0.767138 | 5_2:-33106134 | Msa0768230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTTTATTTTATAT+TGG | + | chr5_2:33106746-33106765 | None:intergenic | 0.0% |
| !! | AAGTAAATTTATCATTATTA+TGG | + | chr5_2:33106276-33106295 | None:intergenic | 10.0% |
| !! | AAATAAATAAAACATAGAAA+AGG | + | chr5_2:33107239-33107258 | None:intergenic | 10.0% |
| !!! | TACAAATTAGTTTATTAATT+TGG | + | chr5_2:33107528-33107547 | None:intergenic | 10.0% |
| !! | TATAACAAAAACAAAATAAT+GGG | + | chr5_2:33107552-33107571 | None:intergenic | 10.0% |
| !! | ATATAACAAAAACAAAATAA+TGG | + | chr5_2:33107553-33107572 | None:intergenic | 10.0% |
| !!! | AATTTGCTTATAAAAAGAAA+CGG | + | chr5_2:33106215-33106234 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTTGTTTTTT+AGG | - | chr5_2:33106224-33106243 | Msa0768230:intron | 15.0% |
| !! | TCATTCAATTAATGATATAT+TGG | - | chr5_2:33106314-33106333 | Msa0768230:CDS | 15.0% |
| !!! | AAATAAATCTAAAACATGAT+TGG | - | chr5_2:33106761-33106780 | Msa0768230:intron | 15.0% |
| !!! | ATTAGTTTATTAATTTGGAA+AGG | + | chr5_2:33107523-33107542 | None:intergenic | 15.0% |
| !! | ATAACAAAAACAAAATAATG+GGG | + | chr5_2:33107551-33107570 | None:intergenic | 15.0% |
| !! | GAAATATATTATATGTGATT+TGG | + | chr5_2:33107705-33107724 | None:intergenic | 15.0% |
| !! | ACATTAATTTCAAAGTTATA+TGG | + | chr5_2:33107727-33107746 | None:intergenic | 15.0% |
| !! | GTAAATAAAACATAGTATAT+TGG | - | chr5_2:33107878-33107897 | Msa0768230:intron | 15.0% |
| !!! | TACTAACATATTTTTGTATT+CGG | + | chr5_2:33108497-33108516 | None:intergenic | 15.0% |
| !! | AAGTTAAAATTTGTCTAAAA+TGG | + | chr5_2:33108552-33108571 | None:intergenic | 15.0% |
| !! | CACAAATAAATTAATAAATC+CGG | + | chr5_2:33108682-33108701 | None:intergenic | 15.0% |
| !! | ATTAATTTATTTGTGGTATA+TGG | - | chr5_2:33108687-33108706 | Msa0768230:intron | 15.0% |
| !! | TTATTTATAAAAAGAAACGG+AGG | - | chr5_2:33106377-33106396 | Msa0768230:intron | 20.0% |
| !! | TATTTATAAAAAGAAACGGA+GGG | - | chr5_2:33106378-33106397 | Msa0768230:intron | 20.0% |
| !!! | AATGTGTAGATTGTTTTTTA+AGG | - | chr5_2:33106663-33106682 | Msa0768230:intron | 20.0% |
| !!! | ATGTGTAGATTGTTTTTTAA+GGG | - | chr5_2:33106664-33106683 | Msa0768230:intron | 20.0% |
| !!! | TTTAGTTGTATTTCTGTTAA+TGG | + | chr5_2:33106998-33107017 | None:intergenic | 20.0% |
| !! | TAGATTAAATCAAGGTTTAA+TGG | - | chr5_2:33107162-33107181 | Msa0768230:intron | 20.0% |
| !! | AGATTAAATCAAGGTTTAAT+GGG | - | chr5_2:33107163-33107182 | Msa0768230:intron | 20.0% |
| !! | TGCAAAGCATATTATTAATA+AGG | + | chr5_2:33107352-33107371 | None:intergenic | 20.0% |
| !! | AAAATGTGAAAGGAAATAAA+GGG | + | chr5_2:33107645-33107664 | None:intergenic | 20.0% |
| !! | TAAAATGTGAAAGGAAATAA+AGG | + | chr5_2:33107646-33107665 | None:intergenic | 20.0% |
| !!! | TTATTTCCTTTCACATTTTA+TGG | - | chr5_2:33107646-33107665 | Msa0768230:CDS | 20.0% |
| !!! | TATTTCCTTTCACATTTTAT+GGG | - | chr5_2:33107647-33107666 | Msa0768230:CDS | 20.0% |
| !!! | ATGTCAAACTTTTTTAATGA+TGG | + | chr5_2:33107966-33107985 | None:intergenic | 20.0% |
| !! | TGCAATTCAAGAAAATATTA+CGG | - | chr5_2:33108199-33108218 | Msa0768230:intron | 20.0% |
| !! | TATTAGTACGATAATTACTA+TGG | - | chr5_2:33108414-33108433 | Msa0768230:intron | 20.0% |
| !! | CGGATTTATTAATTTATTTG+TGG | - | chr5_2:33108680-33108699 | Msa0768230:intron | 20.0% |
| !! | TTTAGTGAAATAACAATAGT+TGG | - | chr5_2:33109030-33109049 | Msa0768230:CDS | 20.0% |
| !! | ACTAATAGAGTAAAGTACTA+TGG | - | chr5_2:33105953-33105972 | Msa0768230:three_prime_UTR | 25.0% |
| !! | CAAAAGCATAAATGAAACTA+TGG | + | chr5_2:33106003-33106022 | None:intergenic | 25.0% |
| ! | ATTGAAAGATAACAAGCTAA+AGG | + | chr5_2:33106098-33106117 | None:intergenic | 25.0% |
| ! | CACATTAAAATCTACATTGA+CGG | + | chr5_2:33106649-33106668 | None:intergenic | 25.0% |
| !!! | TGTGTAGATTGTTTTTTAAG+GGG | - | chr5_2:33106665-33106684 | Msa0768230:intron | 25.0% |
| !! | GATTGCTGTTCAAATATAAT+TGG | - | chr5_2:33106717-33106736 | Msa0768230:CDS | 25.0% |
| ! | CAATCAAAGATACAAAGTTA+GGG | - | chr5_2:33106904-33106923 | Msa0768230:CDS | 25.0% |
| ! | AACTAAAAACAACATCAGAT+AGG | - | chr5_2:33107011-33107030 | Msa0768230:intron | 25.0% |
| ! | TTGATTTAATCTAGTTAAGG+AGG | + | chr5_2:33107155-33107174 | None:intergenic | 25.0% |
| ! | TCCTTAACTAGATTAAATCA+AGG | - | chr5_2:33107154-33107173 | Msa0768230:intron | 25.0% |
| ! | ACCTTGATTTAATCTAGTTA+AGG | + | chr5_2:33107158-33107177 | None:intergenic | 25.0% |
| ! | TAGTTCAATGAATTTGACTA+CGG | + | chr5_2:33107291-33107310 | None:intergenic | 25.0% |
| !!! | GCATTTACATTTAGGTTTTA+TGG | + | chr5_2:33107499-33107518 | None:intergenic | 25.0% |
| !!! | AGAGTTTTTTAGTCATAAAG+AGG | + | chr5_2:33107580-33107599 | None:intergenic | 25.0% |
| ! | TGTAAAAATGTTTACACCAT+CGG | + | chr5_2:33108050-33108069 | None:intergenic | 25.0% |
| !! | GAAAGTACAATTTCTTGTAA+TGG | + | chr5_2:33108267-33108286 | None:intergenic | 25.0% |
| ! | AAATTAATAAATCCGGACTA+TGG | + | chr5_2:33108675-33108694 | None:intergenic | 25.0% |
| !! | CTAATTTTTCTGATATGCTT+CGG | - | chr5_2:33108732-33108751 | Msa0768230:intron | 25.0% |
| ATAAATGAAACTATGGTCAC+TGG | + | chr5_2:33105996-33106015 | None:intergenic | 30.0% | |
| TGATTCAATACACCAATGAA+TGG | - | chr5_2:33106021-33106040 | Msa0768230:three_prime_UTR | 30.0% | |
| GATTCAATACACCAATGAAT+GGG | - | chr5_2:33106022-33106041 | Msa0768230:three_prime_UTR | 30.0% | |
| ATTCAATACACCAATGAATG+GGG | - | chr5_2:33106023-33106042 | Msa0768230:three_prime_UTR | 30.0% | |
| AAATTGAATTTCCCACTGTT+AGG | - | chr5_2:33106124-33106143 | Msa0768230:CDS | 30.0% | |
| AATTGAATTTCCCACTGTTA+GGG | - | chr5_2:33106125-33106144 | Msa0768230:CDS | 30.0% | |
| CGCATTCAAACATATATAAG+TGG | - | chr5_2:33106161-33106180 | Msa0768230:CDS | 30.0% | |
| GTACAAAAATTAAGATGGGA+CGG | + | chr5_2:33106187-33106206 | None:intergenic | 30.0% | |
| ! | GGGAGTACAAAAATTAAGAT+GGG | + | chr5_2:33106191-33106210 | None:intergenic | 30.0% |
| ! | AGGGAGTACAAAAATTAAGA+TGG | + | chr5_2:33106192-33106211 | None:intergenic | 30.0% |
| TGCTTATAAAAAGAAACGGA+GGG | + | chr5_2:33106211-33106230 | None:intergenic | 30.0% | |
| TTGCTTATAAAAAGAAACGG+AGG | + | chr5_2:33106212-33106231 | None:intergenic | 30.0% | |
| AAATCATTGTTTGCAGATTC+TGG | + | chr5_2:33106489-33106508 | None:intergenic | 30.0% | |
| ATTTATCTAGCAAGTGTTCA+TGG | - | chr5_2:33106505-33106524 | Msa0768230:intron | 30.0% | |
| TTTATCTAGCAAGTGTTCAT+GGG | - | chr5_2:33106506-33106525 | Msa0768230:intron | 30.0% | |
| !!! | GTGTAGATTGTTTTTTAAGG+GGG | - | chr5_2:33106666-33106685 | Msa0768230:intron | 30.0% |
| ! | CTGAATATTTTATTGTAGCG+TGG | + | chr5_2:33106798-33106817 | None:intergenic | 30.0% |
| ATACGTAAACACGTCTTAAT+TGG | + | chr5_2:33106858-33106877 | None:intergenic | 30.0% | |
| CCTAACTTTGTATCTTTGAT+TGG | + | chr5_2:33106906-33106925 | None:intergenic | 30.0% | |
| CCAATCAAAGATACAAAGTT+AGG | - | chr5_2:33106903-33106922 | Msa0768230:CDS | 30.0% | |
| !! | TGTTAATGGCTGTTTGTTTT+GGG | + | chr5_2:33106984-33107003 | None:intergenic | 30.0% |
| !!! | ATTCTGTTAAGGAAGTGTTT+TGG | + | chr5_2:33107096-33107115 | None:intergenic | 30.0% |
| ! | GTCGTGTTATTATTCTGTTA+AGG | + | chr5_2:33107107-33107126 | None:intergenic | 30.0% |
| TTATTGTCCATTACACTTTC+AGG | - | chr5_2:33107381-33107400 | Msa0768230:intron | 30.0% | |
| TATTGTCCATTACACTTTCA+GGG | - | chr5_2:33107382-33107401 | Msa0768230:intron | 30.0% | |
| GATTGTAAAGATCAGAAAAC+TGG | - | chr5_2:33107405-33107424 | Msa0768230:intron | 30.0% | |
| AGATCAGAAAACTGGAATTA+AGG | - | chr5_2:33107413-33107432 | Msa0768230:intron | 30.0% | |
| GATCAGAAAACTGGAATTAA+GGG | - | chr5_2:33107414-33107433 | Msa0768230:CDS | 30.0% | |
| ATCAGAAAACTGGAATTAAG+GGG | - | chr5_2:33107415-33107434 | Msa0768230:CDS | 30.0% | |
| GCAATGAAATAACTGTTCAT+TGG | - | chr5_2:33107802-33107821 | Msa0768230:intron | 30.0% | |
| AGCAATGAATTTGACATACA+TGG | + | chr5_2:33107851-33107870 | None:intergenic | 30.0% | |
| AAATTCTATGACTTAGAGCT+AGG | - | chr5_2:33108164-33108183 | Msa0768230:intron | 30.0% | |
| ATCTTTATATGCCCATTTAC+AGG | + | chr5_2:33108773-33108792 | None:intergenic | 30.0% | |
| !!! | TTTTGATAATGACACGAAGT+TGG | - | chr5_2:33108993-33109012 | Msa0768230:intron | 30.0% |
| ! | GATGTTGATTGTAAGACAAA+AGG | - | chr5_2:33109070-33109089 | Msa0768230:CDS | 30.0% |
| CATTGTTTGTAAGATTGCTC+AGG | - | chr5_2:33106061-33106080 | Msa0768230:exon | 35.0% | |
| AAAGATAACAAGCTAAAGGC+AGG | + | chr5_2:33106094-33106113 | None:intergenic | 35.0% | |
| ATTGAATTTCCCACTGTTAG+GGG | - | chr5_2:33106126-33106145 | Msa0768230:CDS | 35.0% | |
| ATGTGAGGTTTATCTATCCT+TGG | - | chr5_2:33106535-33106554 | Msa0768230:intron | 35.0% | |
| TTGTAATCGCAAACATAGTC+AGG | + | chr5_2:33106588-33106607 | None:intergenic | 35.0% | |
| !!! | TAGATTGTTTTTTAAGGGGG+TGG | - | chr5_2:33106669-33106688 | Msa0768230:intron | 35.0% |
| !!! | AGATTGTTTTTTAAGGGGGT+GGG | - | chr5_2:33106670-33106689 | Msa0768230:intron | 35.0% |
| ! | CTGTTAATGGCTGTTTGTTT+TGG | + | chr5_2:33106985-33107004 | None:intergenic | 35.0% |
| TAGGTAGAAACAAAGCAATG+CGG | - | chr5_2:33107030-33107049 | Msa0768230:intron | 35.0% | |
| !! | TTTGGCTGAGATGTTAGTTT+TGG | + | chr5_2:33107078-33107097 | None:intergenic | 35.0% |
| ATTGTCCATTACACTTTCAG+GGG | - | chr5_2:33107383-33107402 | Msa0768230:intron | 35.0% | |
| !! | GGAAAGGAGCATTTACATTT+AGG | + | chr5_2:33107507-33107526 | None:intergenic | 35.0% |
| TGAAAGGAAATAAAGGGCTT+GGG | + | chr5_2:33107639-33107658 | None:intergenic | 35.0% | |
| TGTCTCCCATAAAATGTGAA+AGG | + | chr5_2:33107655-33107674 | None:intergenic | 35.0% | |
| ! | TTTTATGGGAGACATTCATC+AGG | - | chr5_2:33107661-33107680 | Msa0768230:CDS | 35.0% |
| TCTAATTGTTTACGCGATGA+AGG | - | chr5_2:33108106-33108125 | Msa0768230:intron | 35.0% | |
| AGTATTGTGAGGCATAGTAA+TGG | + | chr5_2:33108229-33108248 | None:intergenic | 35.0% | |
| ! | AACCAATGATGAGTATTGTG+AGG | + | chr5_2:33108240-33108259 | None:intergenic | 35.0% |
| GCATATAAAGATGCATCTGA+AGG | - | chr5_2:33108781-33108800 | Msa0768230:intron | 35.0% | |
| TTTGTAAGATTGCTCAGGTC+AGG | - | chr5_2:33106066-33106085 | Msa0768230:exon | 40.0% | |
| ATGTATGATCCCCTAACAGT+GGG | + | chr5_2:33106138-33106157 | None:intergenic | 40.0% | |
| AATGTATGATCCCCTAACAG+TGG | + | chr5_2:33106139-33106158 | None:intergenic | 40.0% | |
| ! | ATACCTGATTTTGCGAGAAC+AGG | - | chr5_2:33106419-33106438 | Msa0768230:intron | 40.0% |
| TTTATTGTAGCGTGGTACAC+TGG | + | chr5_2:33106790-33106809 | None:intergenic | 40.0% | |
| ATGTCCACGTGTAGGTTAAT+TGG | + | chr5_2:33106835-33106854 | None:intergenic | 40.0% | |
| TTAATTGGATGTCCACGTGT+AGG | + | chr5_2:33106843-33106862 | None:intergenic | 40.0% | |
| AGAGATACAGCCTAAAACAC+AGG | - | chr5_2:33106955-33106974 | Msa0768230:intron | 40.0% | |
| !!! | TAATGGCTGTTTGTTTTGGG+TGG | + | chr5_2:33106981-33107000 | None:intergenic | 40.0% |
| AGGCGTTAATCGTTGGAAAT+GGG | + | chr5_2:33107135-33107154 | None:intergenic | 40.0% | |
| ! | ACAATCCCCTGAAAGTGTAA+TGG | + | chr5_2:33107391-33107410 | None:intergenic | 40.0% |
| GTGAAAGGAAATAAAGGGCT+TGG | + | chr5_2:33107640-33107659 | None:intergenic | 40.0% | |
| TATATGCAGCCTCTACATTG+TGG | - | chr5_2:33107759-33107778 | Msa0768230:intron | 40.0% | |
| ! | AACTGTCATTTGTTGACCGA+TGG | - | chr5_2:33108031-33108050 | Msa0768230:intron | 40.0% |
| TTGTTTACGCGATGAAGGTT+TGG | - | chr5_2:33108111-33108130 | Msa0768230:intron | 40.0% | |
| TGTTTACGCGATGAAGGTTT+GGG | - | chr5_2:33108112-33108131 | Msa0768230:intron | 40.0% | |
| TGCCTCACAATACTCATCAT+TGG | - | chr5_2:33108235-33108254 | Msa0768230:intron | 40.0% | |
| TCTGTTTGCAGGAGAAAATG+TGG | + | chr5_2:33108309-33108328 | None:intergenic | 40.0% | |
| TCTCCTGCAAACAGAAAGTA+TGG | - | chr5_2:33108314-33108333 | Msa0768230:intron | 40.0% | |
| ! | CTCCTGCAAACAGAAAGTAT+GGG | - | chr5_2:33108315-33108334 | Msa0768230:intron | 40.0% |
| GGCTAAAGAAGTCGAAGAAT+GGG | - | chr5_2:33108336-33108355 | Msa0768230:intron | 40.0% | |
| CGAATGGAACATACATGGAT+GGG | + | chr5_2:33108390-33108409 | None:intergenic | 40.0% | |
| ATCGTACTAATAGCTGCGAA+TGG | + | chr5_2:33108406-33108425 | None:intergenic | 40.0% | |
| GGAATACACAAGCTTGACTT+TGG | - | chr5_2:33108708-33108727 | Msa0768230:intron | 40.0% | |
| AGTTGGAATGAGAGAGTTAG+AGG | - | chr5_2:33109047-33109066 | Msa0768230:CDS | 40.0% | |
| GTTGGAATGAGAGAGTTAGA+GGG | - | chr5_2:33109048-33109067 | Msa0768230:CDS | 40.0% | |
| ACCAATGAATGGGGAGAAGA+TGG | - | chr5_2:33106032-33106051 | Msa0768230:three_prime_UTR | 45.0% | |
| CCAATGAATGGGGAGAAGAT+GGG | - | chr5_2:33106033-33106052 | Msa0768230:three_prime_UTR | 45.0% | |
| !!! | TTGTTTTTTAAGGGGGTGGG+TGG | - | chr5_2:33106673-33106692 | Msa0768230:intron | 45.0% |
| !!! | TGTTTTTTAAGGGGGTGGGT+GGG | - | chr5_2:33106674-33106693 | Msa0768230:intron | 45.0% |
| CCACGTGTAGGTTAATTGGT+AGG | + | chr5_2:33106831-33106850 | None:intergenic | 45.0% | |
| CCTACCAATTAACCTACACG+TGG | - | chr5_2:33106828-33106847 | Msa0768230:intron | 45.0% | |
| !! | TTTTGGGTGGCCTGTGTTTT+AGG | + | chr5_2:33106968-33106987 | None:intergenic | 45.0% |
| GTTAATCGTTGGAAATGGGG+GGG | + | chr5_2:33107131-33107150 | None:intergenic | 45.0% | |
| CGTTAATCGTTGGAAATGGG+GGG | + | chr5_2:33107132-33107151 | None:intergenic | 45.0% | |
| GCGTTAATCGTTGGAAATGG+GGG | + | chr5_2:33107133-33107152 | None:intergenic | 45.0% | |
| GGCGTTAATCGTTGGAAATG+GGG | + | chr5_2:33107134-33107153 | None:intergenic | 45.0% | |
| ! | GAGGCGTTAATCGTTGGAAA+TGG | + | chr5_2:33107136-33107155 | None:intergenic | 45.0% |
| !! | GTTAAGGAGGCGTTAATCGT+TGG | + | chr5_2:33107142-33107161 | None:intergenic | 45.0% |
| CTAGTGACATCTTCGACTCA+TGG | + | chr5_2:33107320-33107339 | None:intergenic | 45.0% | |
| AATTAAGGGGCGATGTGTTG+TGG | - | chr5_2:33107428-33107447 | Msa0768230:CDS | 45.0% | |
| ATTAAGGGGCGATGTGTTGT+GGG | - | chr5_2:33107429-33107448 | Msa0768230:CDS | 45.0% | |
| TTATGGCACTGCCATAATCG+AGG | + | chr5_2:33107482-33107501 | None:intergenic | 45.0% | |
| GGAAATAAAGGGCTTGGGTA+AGG | + | chr5_2:33107634-33107653 | None:intergenic | 45.0% | |
| GAGACAAAGCCACAATGTAG+AGG | + | chr5_2:33107771-33107790 | None:intergenic | 45.0% | |
| !! | TGTGGCTTTGTCTCAGACAA+AGG | - | chr5_2:33107777-33107796 | Msa0768230:intron | 45.0% |
| AGCCCATACTTTCTGTTTGC+AGG | + | chr5_2:33108320-33108339 | None:intergenic | 45.0% | |
| GGGCTAAAGAAGTCGAAGAA+TGG | - | chr5_2:33108335-33108354 | Msa0768230:intron | 45.0% | |
| GCGAATGGAACATACATGGA+TGG | + | chr5_2:33108391-33108410 | None:intergenic | 45.0% | |
| AGCTGCGAATGGAACATACA+TGG | + | chr5_2:33108395-33108414 | None:intergenic | 45.0% | |
| GCTGCTGACATCTAACAATG+AGG | + | chr5_2:33108524-33108543 | None:intergenic | 45.0% | |
| CTTCTCTCTGTACCATAGTC+CGG | - | chr5_2:33108660-33108679 | Msa0768230:intron | 45.0% | |
| TAGCGTAGACGCCTGTAAAT+GGG | - | chr5_2:33108759-33108778 | Msa0768230:intron | 45.0% | |
| TCTGAAGGCTCAACACTCAA+AGG | - | chr5_2:33108796-33108815 | Msa0768230:intron | 45.0% | |
| GCTAATCGCAGATTGACGAT+AGG | + | chr5_2:33108934-33108953 | None:intergenic | 45.0% | |
| ! | GTCAATCTGCGATTAGCTCA+AGG | - | chr5_2:33108937-33108956 | Msa0768230:intron | 45.0% |
| ! | AATCTGCGATTAGCTCAAGG+AGG | - | chr5_2:33108940-33108959 | Msa0768230:intron | 45.0% |
| !!! | ATAAATAAATTTTTCTTTTT+AGG | + | chr5_2:33106365-33106384 | None:intergenic | 5.0% |
| !! | AATTTATTTATAAAAAGAAA+CGG | - | chr5_2:33106374-33106393 | Msa0768230:intron | 5.0% |
| CCCATCTTCTCCCCATTCAT+TGG | + | chr5_2:33106036-33106055 | None:intergenic | 50.0% | |
| GAGCCTGTTCTCGCAAAATC+AGG | + | chr5_2:33106425-33106444 | None:intergenic | 50.0% | |
| GTTCATGGGCAGATCATGTG+AGG | - | chr5_2:33106520-33106539 | Msa0768230:intron | 50.0% | |
| AAGTGCAAAGCAGACGACCA+AGG | + | chr5_2:33106555-33106574 | None:intergenic | 50.0% | |
| ACCAACCAGCTCCTCGATTA+TGG | - | chr5_2:33107468-33107487 | Msa0768230:intron | 50.0% | |
| ! | GGCTTTGTCTCAGACAAAGG+AGG | - | chr5_2:33107780-33107799 | Msa0768230:intron | 50.0% |
| CGGACTATGGTACAGAGAGA+AGG | + | chr5_2:33108662-33108681 | None:intergenic | 50.0% | |
| GTAGCGTAGACGCCTGTAAA+TGG | - | chr5_2:33108758-33108777 | Msa0768230:intron | 50.0% | |
| TGACGATAGGAAGACGTGAC+AGG | + | chr5_2:33108921-33108940 | None:intergenic | 50.0% | |
| AGCTCAAGGAGGAGTTCGAT+TGG | - | chr5_2:33108951-33108970 | Msa0768230:intron | 50.0% | |
| AGAACAGGCTCGACTTAGCG+AGG | - | chr5_2:33106434-33106453 | Msa0768230:intron | 55.0% | |
| ACTTAGCGAGGCAGCTGCAA+AGG | - | chr5_2:33106446-33106465 | Msa0768230:intron | 55.0% | |
| !! | TTTTTAAGGGGGTGGGTGGG+TGG | - | chr5_2:33106677-33106696 | Msa0768230:intron | 55.0% |
| !! | TTTTAAGGGGGTGGGTGGGT+GGG | - | chr5_2:33106678-33106697 | Msa0768230:intron | 55.0% |
| GCCATAATCGAGGAGCTGGT+TGG | + | chr5_2:33107472-33107491 | None:intergenic | 55.0% | |
| CACTGCCATAATCGAGGAGC+TGG | + | chr5_2:33107476-33107495 | None:intergenic | 55.0% | |
| TTTAAGGGGGTGGGTGGGTG+GGG | - | chr5_2:33106679-33106698 | Msa0768230:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 33105940 | 33109156 | 33105940 | ID=Msa0768230;Name=Msa0768230 |
| chr5_2 | mRNA | 33105940 | 33109156 | 33105940 | ID=Msa0768230-mRNA-1;Parent=Msa0768230;Name=Msa0768230-mRNA-1;_AED=0.13;_eAED=0.13;_QI=32|0.87|0.88|1|1|1|9|127|289 |
| chr5_2 | exon | 33105940 | 33106188 | 33105940 | ID=Msa0768230-mRNA-1:exon:11795;Parent=Msa0768230-mRNA-1 |
| chr5_2 | exon | 33106279 | 33106334 | 33106279 | ID=Msa0768230-mRNA-1:exon:11794;Parent=Msa0768230-mRNA-1 |
| chr5_2 | exon | 33106701 | 33106768 | 33106701 | ID=Msa0768230-mRNA-1:exon:11793;Parent=Msa0768230-mRNA-1 |
| chr5_2 | exon | 33106876 | 33106968 | 33106876 | ID=Msa0768230-mRNA-1:exon:11792;Parent=Msa0768230-mRNA-1 |
| chr5_2 | exon | 33107245 | 33107328 | 33107245 | ID=Msa0768230-mRNA-1:exon:11791;Parent=Msa0768230-mRNA-1 |
| chr5_2 | exon | 33107414 | 33107469 | 33107414 | ID=Msa0768230-mRNA-1:exon:11790;Parent=Msa0768230-mRNA-1 |
| chr5_2 | exon | 33107586 | 33107693 | 33107586 | ID=Msa0768230-mRNA-1:exon:11789;Parent=Msa0768230-mRNA-1 |
| chr5_2 | exon | 33108484 | 33108655 | 33108484 | ID=Msa0768230-mRNA-1:exon:11788;Parent=Msa0768230-mRNA-1 |
| chr5_2 | exon | 33109014 | 33109156 | 33109014 | ID=Msa0768230-mRNA-1:exon:11787;Parent=Msa0768230-mRNA-1 |
| chr5_2 | five_prime_UTR | 33109125 | 33109156 | 33109125 | ID=Msa0768230-mRNA-1:five_prime_utr;Parent=Msa0768230-mRNA-1 |
| chr5_2 | CDS | 33109014 | 33109124 | 33109014 | ID=Msa0768230-mRNA-1:cds;Parent=Msa0768230-mRNA-1 |
| chr5_2 | CDS | 33108484 | 33108655 | 33108484 | ID=Msa0768230-mRNA-1:cds;Parent=Msa0768230-mRNA-1 |
| chr5_2 | CDS | 33107586 | 33107693 | 33107586 | ID=Msa0768230-mRNA-1:cds;Parent=Msa0768230-mRNA-1 |
| chr5_2 | CDS | 33107414 | 33107469 | 33107414 | ID=Msa0768230-mRNA-1:cds;Parent=Msa0768230-mRNA-1 |
| chr5_2 | CDS | 33107245 | 33107328 | 33107245 | ID=Msa0768230-mRNA-1:cds;Parent=Msa0768230-mRNA-1 |
| chr5_2 | CDS | 33106876 | 33106968 | 33106876 | ID=Msa0768230-mRNA-1:cds;Parent=Msa0768230-mRNA-1 |
| chr5_2 | CDS | 33106701 | 33106768 | 33106701 | ID=Msa0768230-mRNA-1:cds;Parent=Msa0768230-mRNA-1 |
| chr5_2 | CDS | 33106279 | 33106334 | 33106279 | ID=Msa0768230-mRNA-1:cds;Parent=Msa0768230-mRNA-1 |
| chr5_2 | CDS | 33106067 | 33106188 | 33106067 | ID=Msa0768230-mRNA-1:cds;Parent=Msa0768230-mRNA-1 |
| chr5_2 | three_prime_UTR | 33105940 | 33106066 | 33105940 | ID=Msa0768230-mRNA-1:three_prime_utr;Parent=Msa0768230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
