Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829650 | XP_013462464.1 | 95.519 | 424 | 18 | 1 | 3 | 425 | 1 | 424 | 0.0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829650 | sp|Q9M0Y3|ENT3_ARATH | 69.512 | 410 | 122 | 2 | 15 | 424 | 10 | 416 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829650 | A0A072V578 | 95.519 | 424 | 18 | 1 | 3 | 425 | 1 | 424 | 0.0 | 823 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053860 | Msa0829650 | 0.805586 | 1.242574e-49 | -8.615850e-47 |
| Msa0092410 | Msa0829650 | 0.800995 | 1.109617e-48 | -8.615850e-47 |
| Msa0101240 | Msa0829650 | 0.803406 | 3.539297e-49 | -8.615850e-47 |
| Msa0614380 | Msa0829650 | 0.823543 | 1.309028e-53 | -8.615850e-47 |
| Msa0708310 | Msa0829650 | 0.822879 | 1.869951e-53 | -8.615850e-47 |
| Msa0709120 | Msa0829650 | 0.802307 | 5.969749e-49 | -8.615850e-47 |
| Msa0712260 | Msa0829650 | 0.811857 | 5.676389e-51 | -8.615850e-47 |
| Msa0743870 | Msa0829650 | 0.814320 | 1.636038e-51 | -8.615850e-47 |
| Msa0743930 | Msa0829650 | 0.800705 | 1.271678e-48 | -8.615850e-47 |
| Msa0772740 | Msa0829650 | 0.802259 | 6.106884e-49 | -8.615850e-47 |
| Msa0823540 | Msa0829650 | 0.811799 | 5.842401e-51 | -8.615850e-47 |
| Msa0829650 | Msa0863990 | 0.801310 | 9.563332e-49 | -8.615850e-47 |
| Msa0829650 | Msa0865970 | 0.802516 | 5.406053e-49 | -8.615850e-47 |
| Msa0829650 | Msa0867870 | 0.932787 | 5.034170e-95 | -8.615850e-47 |
| Msa0829650 | Msa0881350 | 0.801763 | 7.723518e-49 | -8.615850e-47 |
| Msa0829650 | Msa0899970 | 0.803638 | 3.168579e-49 | -8.615850e-47 |
| Msa0829650 | Msa0945130 | 0.804432 | 2.165931e-49 | -8.615850e-47 |
| Msa0829650 | Msa0965290 | 0.808299 | 3.316455e-50 | -8.615850e-47 |
| Msa0829650 | Msa0999680 | 0.813134 | 2.984463e-51 | -8.615850e-47 |
| Msa0829650 | Msa1012800 | 0.805602 | 1.233368e-49 | -8.615850e-47 |
| Msa0829650 | Msa1030810 | 0.810718 | 1.002556e-50 | -8.615850e-47 |
| Msa0829650 | Msa1043120 | 0.808135 | 3.593799e-50 | -8.615850e-47 |
| Msa0829650 | Msa1069890 | 0.815585 | 8.572504e-52 | -8.615850e-47 |
| Msa0829650 | Msa1089450 | 0.817755 | 2.796836e-52 | -8.615850e-47 |
| Msa0829650 | Msa1133210 | 0.802723 | 4.900866e-49 | -8.615850e-47 |
| Msa0829650 | Msa1234620 | 0.808644 | 2.799144e-50 | -8.615850e-47 |
| Msa0829650 | Msa1259860 | 0.823161 | 1.607220e-53 | -8.615850e-47 |
| Msa0829650 | Msa1337310 | 0.806143 | 9.489262e-50 | -8.615850e-47 |
| Msa0829650 | Msa1353890 | 0.822598 | 2.174633e-53 | -8.615850e-47 |
| Msa0829650 | Msa1360420 | 0.817491 | 3.208524e-52 | -8.615850e-47 |
| Msa0829650 | Msa1366550 | 0.834047 | 3.755272e-56 | -8.615850e-47 |
| Msa0829650 | Msa1369690 | 0.805102 | 1.569765e-49 | -8.615850e-47 |
| Msa0829650 | Msa1369920 | -0.812756 | 3.611885e-51 | -8.615850e-47 |
| Msa0829650 | Msa1399260 | 0.801128 | 1.042026e-48 | -8.615850e-47 |
| Msa0829650 | Msa1418240 | 0.809626 | 1.724033e-50 | -8.615850e-47 |
| Msa0829650 | Msa1430550 | 0.804599 | 1.999117e-49 | -8.615850e-47 |
| Msa0829650 | Msa1434040 | 0.804278 | 2.332308e-49 | -8.615850e-47 |
| Msa0829650 | Msa1463030 | 0.825888 | 3.666067e-54 | -8.615850e-47 |
| Msa0130850 | Msa0829650 | 0.813803 | 2.127569e-51 | -8.615850e-47 |
| Msa0136630 | Msa0829650 | 0.809457 | 1.874242e-50 | -8.615850e-47 |
| Msa0138900 | Msa0829650 | 0.805477 | 1.310258e-49 | -8.615850e-47 |
| Msa0139670 | Msa0829650 | 0.801885 | 7.290024e-49 | -8.615850e-47 |
| Msa0152560 | Msa0829650 | 0.821858 | 3.228888e-53 | -8.615850e-47 |
| Msa0231190 | Msa0829650 | 0.816139 | 6.449492e-52 | -8.615850e-47 |
| Msa0234090 | Msa0829650 | 0.816119 | 6.518236e-52 | -8.615850e-47 |
| Msa0380600 | Msa0829650 | 0.810061 | 1.390130e-50 | -8.615850e-47 |
| Msa0382370 | Msa0829650 | 0.818972 | 1.482781e-52 | -8.615850e-47 |
| Msa0430240 | Msa0829650 | 0.812565 | 3.977432e-51 | -8.615850e-47 |
| Msa0432160 | Msa0829650 | 0.823072 | 1.686500e-53 | -8.615850e-47 |
| Msa0476680 | Msa0829650 | 0.829205 | 5.865105e-55 | -8.615850e-47 |
| Msa0304570 | Msa0829650 | 0.804383 | 2.218241e-49 | -8.615850e-47 |
| Msa0317970 | Msa0829650 | 0.807636 | 4.588176e-50 | -8.615850e-47 |
| Msa0340340 | Msa0829650 | 0.800207 | 1.605784e-48 | -8.615850e-47 |
| Msa0485240 | Msa0829650 | 0.808388 | 3.173981e-50 | -8.615850e-47 |
| Msa0521010 | Msa0829650 | 0.828152 | 1.053988e-54 | -8.615850e-47 |
| Msa0574600 | Msa0829650 | 0.805093 | 1.576752e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829650 | MtrunA17_Chr2g0280991 | 95.519 | 424 | 18 | 1 | 3 | 425 | 1 | 424 | 0.0 | 823 |
| Msa0829650 | MtrunA17_Chr2g0280971 | 69.398 | 415 | 126 | 1 | 10 | 424 | 30 | 443 | 0.0 | 598 |
| Msa0829650 | MtrunA17_Chr4g0022871 | 69.363 | 408 | 123 | 1 | 15 | 422 | 7 | 412 | 0.0 | 567 |
| Msa0829650 | MtrunA17_Chr2g0323381 | 70.343 | 408 | 119 | 1 | 15 | 422 | 7 | 412 | 0.0 | 563 |
| Msa0829650 | MtrunA17_Chr4g0022861 | 65.909 | 396 | 133 | 1 | 27 | 422 | 3 | 396 | 0.0 | 534 |
| Msa0829650 | MtrunA17_Chr4g0022801 | 64.394 | 396 | 111 | 2 | 55 | 422 | 10 | 403 | 1.48e-168 | 478 |
| Msa0829650 | MtrunA17_Chr8g0335821 | 63.085 | 363 | 134 | 0 | 60 | 422 | 2 | 364 | 2.37e-155 | 443 |
| Msa0829650 | MtrunA17_Chr1g0184961 | 61.328 | 256 | 85 | 2 | 55 | 303 | 104 | 352 | 1.40e-102 | 308 |
| Msa0829650 | MtrunA17_Chr4g0020331 | 31.340 | 418 | 249 | 10 | 16 | 420 | 23 | 415 | 3.32e-56 | 191 |
| Msa0829650 | MtrunA17_Chr2g0280961 | 72.000 | 125 | 34 | 1 | 255 | 378 | 107 | 231 | 4.93e-55 | 182 |
| Msa0829650 | MtrunA17_Chr2g0280961 | 57.778 | 90 | 38 | 0 | 60 | 149 | 2 | 91 | 1.39e-28 | 112 |
| Msa0829650 | MtrunA17_Chr3g0103741 | 29.108 | 426 | 263 | 10 | 9 | 420 | 23 | 423 | 4.48e-46 | 164 |
| Msa0829650 | MtrunA17_Chr4g0063911 | 27.739 | 429 | 254 | 12 | 11 | 420 | 7 | 398 | 7.07e-38 | 141 |
| Msa0829650 | MtrunA17_Chr1g0184971 | 61.905 | 63 | 24 | 0 | 306 | 368 | 2 | 64 | 2.65e-20 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829650 | AT4G05120.1 | 69.512 | 410 | 122 | 2 | 15 | 424 | 10 | 416 | 0.0 | 593 |
| Msa0829650 | AT4G05120.2 | 69.512 | 410 | 122 | 2 | 15 | 424 | 10 | 416 | 0.0 | 593 |
| Msa0829650 | AT4G05110.3 | 66.341 | 410 | 135 | 2 | 15 | 424 | 10 | 416 | 0.0 | 564 |
| Msa0829650 | AT4G05110.1 | 66.341 | 410 | 135 | 2 | 15 | 424 | 10 | 416 | 0.0 | 564 |
| Msa0829650 | AT4G05140.1 | 64.878 | 410 | 142 | 1 | 15 | 424 | 10 | 417 | 0.0 | 563 |
| Msa0829650 | AT4G05110.2 | 65.937 | 411 | 137 | 2 | 15 | 425 | 10 | 417 | 0.0 | 562 |
| Msa0829650 | AT4G05130.1 | 64.706 | 408 | 141 | 2 | 15 | 422 | 10 | 414 | 0.0 | 542 |
| Msa0829650 | AT1G61630.1 | 59.712 | 417 | 167 | 1 | 9 | 425 | 2 | 417 | 0.0 | 512 |
| Msa0829650 | AT3G09990.1 | 57.073 | 410 | 169 | 2 | 17 | 423 | 11 | 416 | 3.14e-167 | 476 |
| Msa0829650 | AT1G70330.1 | 30.861 | 418 | 254 | 10 | 16 | 420 | 55 | 450 | 3.23e-51 | 179 |
| Msa0829650 | AT1G02630.1 | 29.238 | 407 | 241 | 9 | 24 | 420 | 20 | 389 | 4.44e-50 | 174 |
| Msa0829650 | AT1G02630.2 | 29.293 | 198 | 138 | 2 | 24 | 220 | 20 | 216 | 2.22e-24 | 103 |
Find 117 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATTTAGAATGAATATT+TGG | 0.185466 | 5_4:+2699716 | None:intergenic |
| TGGTGTAAATATTGCGATTT+TGG | 0.214234 | 5_4:-2703733 | Msa0829650:five_prime_UTR |
| TGCATTATCCAGCTTGAATT+TGG | 0.217471 | 5_4:-2702181 | Msa0829650:intron |
| CCATTAAACATGAGAGAAAA+AGG | 0.223576 | 5_4:+2699280 | None:intergenic |
| GCACTTACCCCTGGCTTTCT+TGG | 0.225122 | 5_4:+2702091 | None:intergenic |
| CAATACTAGACTGCGGAATT+TGG | 0.227313 | 5_4:-2701552 | Msa0829650:CDS |
| GATCTTTCTCACTTCATTCT+TGG | 0.247612 | 5_4:-2700133 | Msa0829650:CDS |
| GTATTTCACTATGGGCAATT+TGG | 0.282482 | 5_4:+2700768 | None:intergenic |
| TGTTTGCTAGTTGCTTGTTT+TGG | 0.290570 | 5_4:-2701319 | Msa0829650:CDS |
| TTCTACTTTACTGCAAAATA+TGG | 0.293765 | 5_4:-2700171 | Msa0829650:CDS |
| CGAACGGTAGTATTTCACTA+TGG | 0.294830 | 5_4:+2700759 | None:intergenic |
| ATCTTTCTCACTTCATTCTT+GGG | 0.295376 | 5_4:-2700132 | Msa0829650:CDS |
| CCACATGGAATATTTATAAA+AGG | 0.295739 | 5_4:-2703808 | Msa0829650:five_prime_UTR |
| GATCATTAATAGTCTTTGTT+TGG | 0.319364 | 5_4:+2700680 | None:intergenic |
| TTGTAGGTATCCAATTGTTT+TGG | 0.328113 | 5_4:-2700316 | Msa0829650:intron |
| GAATCAAATCACAGTTGATT+TGG | 0.337625 | 5_4:-2703753 | Msa0829650:five_prime_UTR |
| GATATATTCCACTTATTCAT+TGG | 0.347343 | 5_4:-2700260 | Msa0829650:CDS |
| GCAGCTGACCTAGCTGCTGC+TGG | 0.358535 | 5_4:-2700706 | Msa0829650:CDS |
| CTTGACTGGTTGTGGATCAT+AGG | 0.374248 | 5_4:-2699762 | Msa0829650:CDS |
| CTTGCTGGTTTGTCAGCATC+AGG | 0.376835 | 5_4:-2701094 | Msa0829650:CDS |
| GTTTATCAACCGTTTGCAAT+TGG | 0.381860 | 5_4:-2701611 | Msa0829650:CDS |
| GTTATGCAGTCTTACCTTGC+TGG | 0.384768 | 5_4:-2701109 | Msa0829650:intron |
| TATGAAACTGTTCAATCATA+TGG | 0.387243 | 5_4:+2699473 | None:intergenic |
| ACTTATTCATTGGTTGAAGT+TGG | 0.391649 | 5_4:-2700250 | Msa0829650:CDS |
| TACATAGCAACCAAAACAAT+TGG | 0.393161 | 5_4:+2700306 | None:intergenic |
| AATACCGGAACACATCAATT+AGG | 0.394806 | 5_4:-2700435 | Msa0829650:CDS |
| GACTTGGTTCCCTTGTATCA+TGG | 0.396349 | 5_4:-2701887 | Msa0829650:CDS |
| ACATCAGGGAGAGGTGGAAT+TGG | 0.397951 | 5_4:-2701358 | Msa0829650:CDS |
| GGTCCTGAGCAGAATGCTTT+GGG | 0.404651 | 5_4:-2699834 | Msa0829650:CDS |
| GTTATCAAGAAACAATTGTT+TGG | 0.410292 | 5_4:+2700530 | None:intergenic |
| TTGCCGGTGCTGTTCTTGAC+TGG | 0.414847 | 5_4:-2699776 | Msa0829650:CDS |
| CAGTTGGATTTAGCAACATC+AGG | 0.415092 | 5_4:-2701373 | Msa0829650:CDS |
| GGGTCCTGAGCAGAATGCTT+TGG | 0.418613 | 5_4:-2699835 | Msa0829650:CDS |
| GAAACACATGAACACTTAGA+AGG | 0.425786 | 5_4:-2703642 | Msa0829650:five_prime_UTR |
| GAACAGTTTCATAGATCAAA+AGG | 0.430583 | 5_4:-2699463 | Msa0829650:three_prime_UTR |
| CTGTCATAACACACACAGTT+AGG | 0.436882 | 5_4:+2700094 | None:intergenic |
| TTACTATTACAAATTGTTCC+CGG | 0.438872 | 5_4:-2701841 | Msa0829650:intron |
| TTCATACAAGTAAAAGTGTA+TGG | 0.441818 | 5_4:+2699603 | None:intergenic |
| ACTTTAAATGTGTGAAATCA+TGG | 0.442734 | 5_4:-2699378 | Msa0829650:three_prime_UTR |
| GTGCTGTTCTTGACTGGTTG+TGG | 0.444191 | 5_4:-2699770 | Msa0829650:CDS |
| TGAAGAAATATCATCCTTCA+AGG | 0.445158 | 5_4:-2701646 | Msa0829650:intron |
| ACTAGACTGCGGAATTTGGC+TGG | 0.446916 | 5_4:-2701548 | Msa0829650:CDS |
| ACCAATGTAAGTACCCTTGA+AGG | 0.456083 | 5_4:+2701632 | None:intergenic |
| TCCTTGCAAAGAGAGAGAAT+TGG | 0.458351 | 5_4:+2703663 | None:intergenic |
| TGAATATGATAACAAACAAT+TGG | 0.460910 | 5_4:-2700565 | Msa0829650:CDS |
| AAAGAAAGATATTGAGTATG+TGG | 0.464363 | 5_4:+2699316 | None:intergenic |
| ATTGGTTGAAGTTGGAATCA+AGG | 0.465511 | 5_4:-2700242 | Msa0829650:CDS |
| GGTTGCTATGTATAATGTGC+TGG | 0.467128 | 5_4:-2700295 | Msa0829650:CDS |
| ACCAATTCTCTCTCTTTGCA+AGG | 0.471511 | 5_4:-2703664 | Msa0829650:five_prime_UTR |
| TGTGCCTAATTGATGTGTTC+CGG | 0.475509 | 5_4:+2700431 | None:intergenic |
| AACTTCAACCAATGAATAAG+TGG | 0.480603 | 5_4:+2700252 | None:intergenic |
| GAACGGTAGTATTTCACTAT+GGG | 0.489123 | 5_4:+2700760 | None:intergenic |
| AGATCAACCTGCACAAACTC+CGG | 0.490536 | 5_4:+2701241 | None:intergenic |
| AAACTTGCCTTGTAACCTCT+TGG | 0.492093 | 5_4:+2700066 | None:intergenic |
| TACAATAAGAAGCATGAAAG+TGG | 0.493351 | 5_4:+2701505 | None:intergenic |
| AGCAAACATATACCAATGTA+AGG | 0.495000 | 5_4:+2701334 | None:intergenic |
| CAAAATATGGTGACCAAGGA+TGG | 0.498240 | 5_4:-2700158 | Msa0829650:CDS |
| TATGTGCCCGGAGTTTGTGC+AGG | 0.502537 | 5_4:-2701248 | Msa0829650:intron |
| TTTGCAGTAAAGTAGAATGC+TGG | 0.504345 | 5_4:+2700177 | None:intergenic |
| TTTCCCAAAGCATTCTGCTC+AGG | 0.510605 | 5_4:+2699831 | None:intergenic |
| TGGCTATAAATTGAACAAGT+GGG | 0.513157 | 5_4:-2702161 | Msa0829650:five_prime_UTR |
| ACTGGAGAACCAAGAAAGCC+AGG | 0.515050 | 5_4:-2702100 | Msa0829650:CDS |
| ATCTCACAATGGACTTCGCA+AGG | 0.517727 | 5_4:-2701023 | Msa0829650:CDS |
| ATTGAACAAGTGGGGTGGAA+TGG | 0.517762 | 5_4:-2702152 | Msa0829650:exon |
| TCCTTCAAGGGTACTTACAT+TGG | 0.518028 | 5_4:-2701633 | Msa0829650:CDS |
| ACTATTGTTCCAATTGCAAA+CGG | 0.521316 | 5_4:+2701602 | None:intergenic |
| TTGGCTATAAATTGAACAAG+TGG | 0.522408 | 5_4:-2702162 | Msa0829650:five_prime_UTR |
| CACATTGAAGGTGGCATGGT+TGG | 0.523177 | 5_4:-2701283 | Msa0829650:CDS |
| ATTGCCGACGCTCACATTGA+AGG | 0.530426 | 5_4:-2701295 | Msa0829650:CDS |
| TCATTCTTGGGACTCACCAA+TGG | 0.532878 | 5_4:-2700120 | Msa0829650:CDS |
| TGAGAAAGATCATCCATCCT+TGG | 0.534083 | 5_4:+2700145 | None:intergenic |
| TTTGTAATAGTAATCTCCTA+TGG | 0.535947 | 5_4:+2701851 | None:intergenic |
| TTAGAGAAGAGAAACTGAAC+TGG | 0.537595 | 5_4:-2699681 | Msa0829650:three_prime_UTR |
| CGCTCACATTGAAGGTGGCA+TGG | 0.538344 | 5_4:-2701287 | Msa0829650:CDS |
| AGTGGCACCAAGAGGTTACA+AGG | 0.539089 | 5_4:-2700073 | Msa0829650:intron |
| AATTACAAAGTATTTGAGCT+CGG | 0.548672 | 5_4:+2699421 | None:intergenic |
| ACATGCTGTTCCATGATACA+AGG | 0.549452 | 5_4:+2701877 | None:intergenic |
| AATTACAAGAAAACAAAAGC+TGG | 0.551652 | 5_4:-2703602 | Msa0829650:intron |
| GTTGAAGTTGGAATCAAGGA+AGG | 0.553599 | 5_4:-2700238 | Msa0829650:CDS |
| TTTGGATGCCAGCAGCAGCT+AGG | 0.564184 | 5_4:+2700698 | None:intergenic |
| CGTTCGAAAGCAGCCTCAGA+GGG | 0.567189 | 5_4:-2700742 | Msa0829650:CDS |
| CAAGTGGGGTGGAATGGTCA+TGG | 0.567689 | 5_4:-2702146 | Msa0829650:exon |
| ATAACTGCTAGCAATGGCAC+TGG | 0.569122 | 5_4:-2702118 | Msa0829650:CDS |
| GGTGGAATTGGACCTTACAT+TGG | 0.569807 | 5_4:-2701346 | Msa0829650:CDS |
| GATCAACCTGCACAAACTCC+GGG | 0.576052 | 5_4:+2701242 | None:intergenic |
| TCTAAATTGTTCGATCACAC+AGG | 0.582081 | 5_4:-2699704 | Msa0829650:three_prime_UTR |
| GGCTATAAATTGAACAAGTG+GGG | 0.587656 | 5_4:-2702160 | Msa0829650:five_prime_UTR |
| GATTTAGCAACATCAGGGAG+AGG | 0.591461 | 5_4:-2701367 | Msa0829650:CDS |
| CTGGAGAACCAAGAAAGCCA+GGG | 0.591532 | 5_4:-2702099 | Msa0829650:CDS |
| GCCACCTTCAATGTGAGCGT+CGG | 0.591723 | 5_4:+2701291 | None:intergenic |
| GAAGAAATATCATCCTTCAA+GGG | 0.593035 | 5_4:-2701645 | Msa0829650:intron |
| ACACACAGTTAGGTATCCAT+TGG | 0.596973 | 5_4:+2700104 | None:intergenic |
| TGGAACAGCATGTTGACCAT+AGG | 0.599501 | 5_4:-2701867 | Msa0829650:CDS |
| CCGTTCGAAAGCAGCCTCAG+AGG | 0.599704 | 5_4:-2700743 | Msa0829650:CDS |
| CAACCAGTCAAGAACAGCAC+CGG | 0.605751 | 5_4:+2699773 | None:intergenic |
| TTAGCAACATCAGGGAGAGG+TGG | 0.611744 | 5_4:-2701364 | Msa0829650:CDS |
| CCTCTGAGGCTGCTTTCGAA+CGG | 0.617493 | 5_4:+2700743 | None:intergenic |
| AGTTGGATTTAGCAACATCA+GGG | 0.627711 | 5_4:-2701372 | Msa0829650:CDS |
| GACACTATAACTGCTAGCAA+TGG | 0.632200 | 5_4:-2702124 | Msa0829650:CDS |
| ACTGCAAAATATGGTGACCA+AGG | 0.633140 | 5_4:-2700162 | Msa0829650:CDS |
| ACACATGAACACTTAGAAGG+TGG | 0.637720 | 5_4:-2703639 | Msa0829650:five_prime_UTR |
| ATGATAACAAACAATTGGAG+CGG | 0.645102 | 5_4:-2700560 | Msa0829650:CDS |
| TTGAAGTTGGAATCAAGGAA+GGG | 0.647516 | 5_4:-2700237 | Msa0829650:CDS |
| TATGGACGAAAATAGCTGCA+TGG | 0.648258 | 5_4:+2699491 | None:intergenic |
| GGGAAAATACAAAGCAATCG+CGG | 0.658679 | 5_4:-2701925 | Msa0829650:CDS |
| AGTATGTGGTTGAAATGCAA+AGG | 0.660889 | 5_4:+2699330 | None:intergenic |
| TATAAATTGAACAAGTGGGG+TGG | 0.661431 | 5_4:-2702157 | Msa0829650:five_prime_UTR |
| GAACACATCAATTAGGCACA+TGG | 0.662987 | 5_4:-2700428 | Msa0829650:intron |
| GCCGACGCTCACATTGAAGG+TGG | 0.663539 | 5_4:-2701292 | Msa0829650:CDS |
| TCTCACAATGGACTTCGCAA+GGG | 0.672477 | 5_4:-2701022 | Msa0829650:CDS |
| CATGCTGTTCCATGATACAA+GGG | 0.675388 | 5_4:+2701878 | None:intergenic |
| ATATACCCGTCAAAAGACAA+AGG | 0.678092 | 5_4:+2699799 | None:intergenic |
| CTGATGCTGACAAACCAGCA+AGG | 0.683173 | 5_4:+2701095 | None:intergenic |
| TGGAGAACCAAGAAAGCCAG+GGG | 0.704338 | 5_4:-2702098 | Msa0829650:intron |
| CGAAGATCAATACTAGACTG+CGG | 0.707751 | 5_4:-2701559 | Msa0829650:CDS |
| GTTATGACAGTGGCACCAAG+AGG | 0.714743 | 5_4:-2700081 | Msa0829650:CDS |
| AACTGTGTGTGTTATGACAG+TGG | 0.732698 | 5_4:-2700091 | Msa0829650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTAATTGTATTGTTTT+AGG | - | chr5_4:2699699-2699718 | Msa0829650:three_prime_UTR | 10.0% |
| !!! | TAATTAATTGTATTGTTTTA+GGG | - | chr5_4:2699700-2699719 | Msa0829650:three_prime_UTR | 10.0% |
| !! | TTAAATGTTACATAAAAATT+GGG | + | chr5_4:2699959-2699978 | None:intergenic | 10.0% |
| !! | ATTAAATGTTACATAAAAAT+TGG | + | chr5_4:2699960-2699979 | None:intergenic | 10.0% |
| !!! | TTTTATTGATAGATAATTAT+AGG | - | chr5_4:2700101-2700120 | Msa0829650:CDS | 10.0% |
| !!! | ACTTTTTTTATTACAAAAAA+AGG | + | chr5_4:2700577-2700596 | None:intergenic | 10.0% |
| !!! | TACTTTTTCTTTATAATTAA+AGG | - | chr5_4:2700693-2700712 | Msa0829650:CDS | 10.0% |
| !! | AAACAAATTTAAAAATGAAA+AGG | + | chr5_4:2703707-2703726 | None:intergenic | 10.0% |
| !! | TATTATTTATCAATAATCGA+AGG | - | chr5_4:2699511-2699530 | Msa0829650:three_prime_UTR | 15.0% |
| !! | ATTATTTATCAATAATCGAA+GGG | - | chr5_4:2699512-2699531 | Msa0829650:three_prime_UTR | 15.0% |
| !! | TAGGTAACAAATTATTTAAT+CGG | - | chr5_4:2699925-2699944 | Msa0829650:intron | 15.0% |
| !! | AATGAAAAAAAATAAAAGGT+AGG | + | chr5_4:2700349-2700368 | None:intergenic | 15.0% |
| !! | GAACAATGAAAAAAAATAAA+AGG | + | chr5_4:2700353-2700372 | None:intergenic | 15.0% |
| !! | TTACTTACTAAAAATAAGTT+TGG | - | chr5_4:2700464-2700483 | Msa0829650:CDS | 15.0% |
| !! | TATTGTTCTTAAGAAAAATT+TGG | + | chr5_4:2701278-2701297 | None:intergenic | 15.0% |
| !! | AAAAATTTGAATAAGTTATG+TGG | + | chr5_4:2701845-2701864 | None:intergenic | 15.0% |
| !! | ATAAAATGACAAAACAAAAT+AGG | + | chr5_4:2702663-2702682 | None:intergenic | 15.0% |
| !!! | AACAATTTAGAATGAATATT+TGG | + | chr5_4:2703346-2703365 | None:intergenic | 15.0% |
| !!! | ATTTTTTATGGTATTAAACA+AGG | - | chr5_4:2703525-2703544 | Msa0829650:intron | 15.0% |
| !!! | AGAAAAAAGTTGTTGAATTT+TGG | - | chr5_4:2699743-2699762 | Msa0829650:exon | 20.0% |
| !! | AATAAAAAAAGTCAATGATG+TGG | - | chr5_4:2700585-2700604 | Msa0829650:intron | 20.0% |
| !!! | GAGACTTTGTAATTTTAAAA+AGG | + | chr5_4:2701881-2701900 | None:intergenic | 20.0% |
| !!! | AGTTGTTTCTTTTGATATAA+AGG | - | chr5_4:2702176-2702195 | Msa0829650:intron | 20.0% |
| !!! | TTGATATAAAGGTATTGATT+CGG | - | chr5_4:2702187-2702206 | Msa0829650:intron | 20.0% |
| !! | TGAATATGATAACAAACAAT+TGG | - | chr5_4:2702494-2702513 | Msa0829650:intron | 20.0% |
| !!! | TATTTTCATACAAAAATCCA+GGG | + | chr5_4:2702608-2702627 | None:intergenic | 20.0% |
| !!! | TTTCCTGTAATGATTTTTTA+TGG | - | chr5_4:2703513-2703532 | Msa0829650:intron | 20.0% |
| !! | ATACCATAAAAAATCATTAC+AGG | + | chr5_4:2703519-2703538 | None:intergenic | 20.0% |
| !! | CCTTTTATAAATATTCCATG+TGG | + | chr5_4:2699254-2699273 | None:intergenic | 25.0% |
| ! | CCACATGGAATATTTATAAA+AGG | - | chr5_4:2699251-2699270 | Msa0829650:three_prime_UTR | 25.0% |
| ! | AATTACAAGAAAACAAAAGC+TGG | - | chr5_4:2699457-2699476 | Msa0829650:three_prime_UTR | 25.0% |
| ! | TATCAAAGAAAACAAGTTGT+TGG | - | chr5_4:2699841-2699860 | Msa0829650:intron | 25.0% |
| ! | TGAAATAAGTTTAAACAAGC+TGG | - | chr5_4:2699867-2699886 | Msa0829650:intron | 25.0% |
| !!! | TATAGTATTGTTGATGATGT+CGG | + | chr5_4:2700212-2700231 | None:intergenic | 25.0% |
| ! | TCATTGTTCTTCTATATTCT+TGG | - | chr5_4:2700364-2700383 | Msa0829650:intron | 25.0% |
| ! | AAAATATGTTCACAAGGATT+TGG | + | chr5_4:2700637-2700656 | None:intergenic | 25.0% |
| ! | AGTGGAAGAAAAAAAAAAGA+TGG | + | chr5_4:2700995-2701014 | None:intergenic | 25.0% |
| ! | CAAATTCAGATCACAATAAA+TGG | + | chr5_4:2701092-2701111 | None:intergenic | 25.0% |
| ! | ATGTATTAACTAATGCAAAC+AGG | - | chr5_4:2701113-2701132 | Msa0829650:intron | 25.0% |
| ! | TGTATTAACTAATGCAAACA+GGG | - | chr5_4:2701114-2701133 | Msa0829650:intron | 25.0% |
| ! | TTTGTAATAGTAATCTCCTA+TGG | + | chr5_4:2701211-2701230 | None:intergenic | 25.0% |
| ! | TTACTATTACAAATTGTTCC+CGG | - | chr5_4:2701218-2701237 | Msa0829650:intron | 25.0% |
| ! | TAGATTATAGGATTGGAAAA+TGG | + | chr5_4:2701586-2701605 | None:intergenic | 25.0% |
| ! | TGCAAATTAGATTATAGGAT+TGG | + | chr5_4:2701593-2701612 | None:intergenic | 25.0% |
| !! | TATAATCTAATTTGCAGCAT+CGG | - | chr5_4:2701597-2701616 | Msa0829650:CDS | 25.0% |
| ! | ACTTAATAAGCTAAGGAAAT+TGG | + | chr5_4:2701639-2701658 | None:intergenic | 25.0% |
| ! | TCTAATAGCAGTAACTTAAA+AGG | + | chr5_4:2702129-2702148 | None:intergenic | 25.0% |
| ! | GATCATTAATAGTCTTTGTT+TGG | + | chr5_4:2702382-2702401 | None:intergenic | 25.0% |
| !!! | TTTTTCGATTATGTCCTAAA+AGG | - | chr5_4:2702452-2702471 | Msa0829650:intron | 25.0% |
| ! | GTTATCAAGAAACAATTGTT+TGG | + | chr5_4:2702532-2702551 | None:intergenic | 25.0% |
| !! | GTATTTTCATACAAAAATCC+AGG | + | chr5_4:2702609-2702628 | None:intergenic | 25.0% |
| !! | GGATTTTTGTATGAAAATAC+CGG | - | chr5_4:2702609-2702628 | Msa0829650:intron | 25.0% |
| !!! | TTGTCATTTTATCCTTTAGA+TGG | - | chr5_4:2702671-2702690 | Msa0829650:intron | 25.0% |
| ! | TGGTATCAAAATCAATTTCA+CGG | + | chr5_4:2702697-2702716 | None:intergenic | 25.0% |
| !! | TTGATACCAAGTTTTTATGT+TGG | - | chr5_4:2702708-2702727 | Msa0829650:intron | 25.0% |
| ! | GATATATTCCACTTATTCAT+TGG | - | chr5_4:2702799-2702818 | Msa0829650:intron | 25.0% |
| ! | TTCTACTTTACTGCAAAATA+TGG | - | chr5_4:2702888-2702907 | Msa0829650:intron | 25.0% |
| ! | TCTAAGTTCTGTACTAATTT+CGG | - | chr5_4:2703185-2703204 | Msa0829650:intron | 25.0% |
| !! | TTCATACAAGTAAAAGTGTA+TGG | + | chr5_4:2703459-2703478 | None:intergenic | 25.0% |
| ! | TATGAAACTGTTCAATCATA+TGG | + | chr5_4:2703589-2703608 | None:intergenic | 25.0% |
| !! | AATTACAAAGTATTTGAGCT+CGG | + | chr5_4:2703641-2703660 | None:intergenic | 25.0% |
| ! | ACTTTAAATGTGTGAAATCA+TGG | - | chr5_4:2703681-2703700 | Msa0829650:five_prime_UTR | 25.0% |
| ! | AAAGAAAGATATTGAGTATG+TGG | + | chr5_4:2703746-2703765 | None:intergenic | 25.0% |
| ! | CATTAAACATGAGAGAAAAA+GGG | + | chr5_4:2703781-2703800 | None:intergenic | 25.0% |
| GAATCAAATCACAGTTGATT+TGG | - | chr5_4:2699306-2699325 | Msa0829650:three_prime_UTR | 30.0% | |
| ! | TGGTGTAAATATTGCGATTT+TGG | - | chr5_4:2699326-2699345 | Msa0829650:three_prime_UTR | 30.0% |
| TACAACATAGAAACAGAGTT+TGG | + | chr5_4:2699654-2699673 | None:intergenic | 30.0% | |
| ! | ATGTATTTTATTGCCTCTTC+TGG | + | chr5_4:2700170-2700189 | None:intergenic | 30.0% |
| ! | AAATAAGTTTGGTGAGTGAT+TGG | - | chr5_4:2700475-2700494 | Msa0829650:CDS | 30.0% |
| ! | TGTGGTTTTTGATCAACAAA+TGG | - | chr5_4:2700603-2700622 | Msa0829650:intron | 30.0% |
| ! | GTGGTTTTTGATCAACAAAT+GGG | - | chr5_4:2700604-2700623 | Msa0829650:intron | 30.0% |
| ! | TGGTTTTTGATCAACAAATG+GGG | - | chr5_4:2700605-2700624 | Msa0829650:intron | 30.0% |
| !!! | AACATATTTTGCCGACTTTA+GGG | - | chr5_4:2700647-2700666 | Msa0829650:intron | 30.0% |
| CTTCTTATGGTCACATAATA+TGG | + | chr5_4:2700738-2700757 | None:intergenic | 30.0% | |
| ATTTATAGCCAAATTCAAGC+TGG | + | chr5_4:2700889-2700908 | None:intergenic | 30.0% | |
| TTGGCTATAAATTGAACAAG+TGG | - | chr5_4:2700897-2700916 | Msa0829650:intron | 30.0% | |
| TGGCTATAAATTGAACAAGT+GGG | - | chr5_4:2700898-2700917 | Msa0829650:intron | 30.0% | |
| CGATACGTTAATATCTTCTT+CGG | + | chr5_4:2701064-2701083 | None:intergenic | 30.0% | |
| !!! | GTTTGTTTTTTTCTTGGACT+TGG | - | chr5_4:2701156-2701175 | Msa0829650:intron | 30.0% |
| TGAAGAAATATCATCCTTCA+AGG | - | chr5_4:2701413-2701432 | Msa0829650:intron | 30.0% | |
| GAAGAAATATCATCCTTCAA+GGG | - | chr5_4:2701414-2701433 | Msa0829650:intron | 30.0% | |
| ACTATTGTTCCAATTGCAAA+CGG | + | chr5_4:2701460-2701479 | None:intergenic | 30.0% | |
| ! | TACAATAAGAAGCATGAAAG+TGG | + | chr5_4:2701557-2701576 | None:intergenic | 30.0% |
| GATGCTGCAAATTAGATTAT+AGG | + | chr5_4:2701598-2701617 | None:intergenic | 30.0% | |
| AGCAAACATATACCAATGTA+AGG | + | chr5_4:2701728-2701747 | None:intergenic | 30.0% | |
| ! | TGATTTATGTTTTATGTGCC+CGG | - | chr5_4:2701799-2701818 | Msa0829650:intron | 30.0% |
| !! | AGATTTTTCGAAAGCAAACT+TGG | + | chr5_4:2702020-2702039 | None:intergenic | 30.0% |
| ! | CAAAAGTTTCGATACCTTTT+AGG | + | chr5_4:2702469-2702488 | None:intergenic | 30.0% |
| !!! | AAAGGTATCGAAACTTTTGT+AGG | - | chr5_4:2702470-2702489 | Msa0829650:intron | 30.0% |
| ATGATAACAAACAATTGGAG+CGG | - | chr5_4:2702499-2702518 | Msa0829650:intron | 30.0% | |
| ! | TTGTAGGTATCCAATTGTTT+TGG | - | chr5_4:2702743-2702762 | Msa0829650:intron | 30.0% |
| TACATAGCAACCAAAACAAT+TGG | + | chr5_4:2702756-2702775 | None:intergenic | 30.0% | |
| AACTTCAACCAATGAATAAG+TGG | + | chr5_4:2702810-2702829 | None:intergenic | 30.0% | |
| ! | ACTTATTCATTGGTTGAAGT+TGG | - | chr5_4:2702809-2702828 | Msa0829650:intron | 30.0% |
| ATCTTTCTCACTTCATTCTT+GGG | - | chr5_4:2702927-2702946 | Msa0829650:intron | 30.0% | |
| ! | CATCAACATTTTATGAGTTG+TGG | + | chr5_4:2703026-2703045 | None:intergenic | 30.0% |
| TCTAGTGTTAGTGTCATATT+CGG | + | chr5_4:2703082-2703101 | None:intergenic | 30.0% | |
| AATATGTGTGAATGTTGCAT+TGG | - | chr5_4:2703161-2703180 | Msa0829650:intron | 30.0% | |
| GAACAGTTTCATAGATCAAA+AGG | - | chr5_4:2703596-2703615 | Msa0829650:intron | 30.0% | |
| CCATTAAACATGAGAGAAAA+AGG | + | chr5_4:2703782-2703801 | None:intergenic | 30.0% | |
| ! | CCTTTTTCTCTCATGTTTAA+TGG | - | chr5_4:2703779-2703798 | Msa0829650:five_prime_UTR | 30.0% |
| GAAACACATGAACACTTAGA+AGG | - | chr5_4:2699417-2699436 | Msa0829650:three_prime_UTR | 35.0% | |
| !!! | TGTTTTAGGGCTGAATGAAT+AGG | - | chr5_4:2699713-2699732 | Msa0829650:three_prime_UTR | 35.0% |
| TCTTCTGTTTCCATTCACAT+TGG | + | chr5_4:2700035-2700054 | None:intergenic | 35.0% | |
| CATAGAGTTAGAGAGAATGA+AGG | + | chr5_4:2700301-2700320 | None:intergenic | 35.0% | |
| CATTCTCTCTAACTCTATGT+AGG | - | chr5_4:2700302-2700321 | Msa0829650:CDS | 35.0% | |
| TTGTATTTCGGAGCTCATTA+GGG | + | chr5_4:2700544-2700563 | None:intergenic | 35.0% | |
| !!! | GAACATATTTTGCCGACTTT+AGG | - | chr5_4:2700646-2700665 | Msa0829650:intron | 35.0% |
| !!! | ACATATTTTGCCGACTTTAG+GGG | - | chr5_4:2700648-2700667 | Msa0829650:intron | 35.0% |
| ! | ATTTTCATGACCCCTAAAGT+CGG | + | chr5_4:2700661-2700680 | None:intergenic | 35.0% |
| TGCATTATCCAGCTTGAATT+TGG | - | chr5_4:2700878-2700897 | Msa0829650:intron | 35.0% | |
| GGCTATAAATTGAACAAGTG+GGG | - | chr5_4:2700899-2700918 | Msa0829650:intron | 35.0% | |
| TATAAATTGAACAAGTGGGG+TGG | - | chr5_4:2700902-2700921 | Msa0829650:intron | 35.0% | |
| !!! | GTAAGCTGTTTTGTTTTCAG+TGG | + | chr5_4:2701013-2701032 | None:intergenic | 35.0% |
| !!! | ATCGCGGTTTGTTTTTTTCT+TGG | - | chr5_4:2701150-2701169 | Msa0829650:intron | 35.0% |
| GTCTTACAAAGAATGTCAAC+CGG | - | chr5_4:2701309-2701328 | Msa0829650:CDS | 35.0% | |
| AAAGAATGTCAACCGGAAAA+TGG | - | chr5_4:2701316-2701335 | Msa0829650:CDS | 35.0% | |
| !! | ATCAGAAACAAGCCATTTTC+CGG | + | chr5_4:2701331-2701350 | None:intergenic | 35.0% |
| GTTTATCAACCGTTTGCAAT+TGG | - | chr5_4:2701448-2701467 | Msa0829650:intron | 35.0% | |
| GGAAGCTACTTAATAAGCTA+AGG | + | chr5_4:2701646-2701665 | None:intergenic | 35.0% | |
| GTCACAACACAAATAGATTG+CGG | + | chr5_4:2701667-2701686 | None:intergenic | 35.0% | |
| TCTATTTGTGTTGTGACAGT+TGG | - | chr5_4:2701670-2701689 | Msa0829650:intron | 35.0% | |
| AGTTGGATTTAGCAACATCA+GGG | - | chr5_4:2701687-2701706 | Msa0829650:intron | 35.0% | |
| !! | TGTTTGCTAGTTGCTTGTTT+TGG | - | chr5_4:2701740-2701759 | Msa0829650:intron | 35.0% |
| GCTTTCGAAAAATCTCACAA+TGG | - | chr5_4:2702025-2702044 | Msa0829650:intron | 35.0% | |
| ACTGCTATTAGATAGTGCAT+TGG | - | chr5_4:2702137-2702156 | Msa0829650:exon | 35.0% | |
| GTATTTCACTATGGGCAATT+TGG | + | chr5_4:2702294-2702313 | None:intergenic | 35.0% | |
| GAACGGTAGTATTTCACTAT+GGG | + | chr5_4:2702302-2702321 | None:intergenic | 35.0% | |
| !!! | TTAACACTATCGATTTTCCC+TGG | - | chr5_4:2702588-2702607 | Msa0829650:intron | 35.0% |
| AATACCGGAACACATCAATT+AGG | - | chr5_4:2702624-2702643 | Msa0829650:intron | 35.0% | |
| ! | CCAAGTTTTTATGTTGGCAA+CGG | - | chr5_4:2702714-2702733 | Msa0829650:intron | 35.0% |
| ATTGGTTGAAGTTGGAATCA+AGG | - | chr5_4:2702817-2702836 | Msa0829650:intron | 35.0% | |
| TTGAAGTTGGAATCAAGGAA+GGG | - | chr5_4:2702822-2702841 | Msa0829650:intron | 35.0% | |
| TTTGCAGTAAAGTAGAATGC+TGG | + | chr5_4:2702885-2702904 | None:intergenic | 35.0% | |
| GATCTTTCTCACTTCATTCT+TGG | - | chr5_4:2702926-2702945 | Msa0829650:intron | 35.0% | |
| ! | TGTCTATTTTCGTGCTTCAT+AGG | + | chr5_4:2703053-2703072 | None:intergenic | 35.0% |
| ! | TCTTGTCCTTTGTCTTTTGA+CGG | - | chr5_4:2703254-2703273 | Msa0829650:intron | 35.0% |
| ATATACCCGTCAAAAGACAA+AGG | + | chr5_4:2703263-2703282 | None:intergenic | 35.0% | |
| TCTAAATTGTTCGATCACAC+AGG | - | chr5_4:2703355-2703374 | Msa0829650:intron | 35.0% | |
| TTAGAGAAGAGAAACTGAAC+TGG | - | chr5_4:2703378-2703397 | Msa0829650:intron | 35.0% | |
| AGTATGTGGTTGAAATGCAA+AGG | + | chr5_4:2703732-2703751 | None:intergenic | 35.0% | |
| ACCAATTCTCTCTCTTTGCA+AGG | - | chr5_4:2699395-2699414 | Msa0829650:three_prime_UTR | 40.0% | |
| TCCTTGCAAAGAGAGAGAAT+TGG | + | chr5_4:2699399-2699418 | None:intergenic | 40.0% | |
| ACACATGAACACTTAGAAGG+TGG | - | chr5_4:2699420-2699439 | Msa0829650:three_prime_UTR | 40.0% | |
| CATAGAAACAGAGTTTGGCA+AGG | + | chr5_4:2699649-2699668 | None:intergenic | 40.0% | |
| GTTTCTATGTTGTAGCGTTC+TGG | - | chr5_4:2699660-2699679 | Msa0829650:three_prime_UTR | 40.0% | |
| !!! | TTTTGAAGTGTGTTTCCTCG+TGG | - | chr5_4:2699901-2699920 | Msa0829650:intron | 40.0% |
| ! | TTTGAAGTGTGTTTCCTCGT+GGG | - | chr5_4:2699902-2699921 | Msa0829650:intron | 40.0% |
| !! | TAATTTGTTACCTACCCACG+AGG | + | chr5_4:2699919-2699938 | None:intergenic | 40.0% |
| TCTGTTTCCATTCACATTGG+CGG | + | chr5_4:2700032-2700051 | None:intergenic | 40.0% | |
| AAGACTACGTACGTATGTCA+GGG | - | chr5_4:2700051-2700070 | Msa0829650:intron | 40.0% | |
| GTTGTATTTCGGAGCTCATT+AGG | + | chr5_4:2700545-2700564 | None:intergenic | 40.0% | |
| ! | GGTTGATGCGAGTTGTATTT+CGG | + | chr5_4:2700556-2700575 | None:intergenic | 40.0% |
| GTCGGCAAAATATGTTCACA+AGG | + | chr5_4:2700643-2700662 | None:intergenic | 40.0% | |
| GACCATAAGAAGTTGTAGTG+AGG | - | chr5_4:2700746-2700765 | Msa0829650:CDS | 40.0% | |
| CACCTCACTACAACTTCTTA+TGG | + | chr5_4:2700751-2700770 | None:intergenic | 40.0% | |
| GACACTATAACTGCTAGCAA+TGG | - | chr5_4:2700935-2700954 | Msa0829650:intron | 40.0% | |
| GGGAAAATACAAAGCAATCG+CGG | - | chr5_4:2701134-2701153 | Msa0829650:intron | 40.0% | |
| CATGCTGTTCCATGATACAA+GGG | + | chr5_4:2701184-2701203 | None:intergenic | 40.0% | |
| ACATGCTGTTCCATGATACA+AGG | + | chr5_4:2701185-2701204 | None:intergenic | 40.0% | |
| !! | TCCTTCAAGGGTACTTACAT+TGG | - | chr5_4:2701426-2701445 | Msa0829650:intron | 40.0% |
| ACCAATGTAAGTACCCTTGA+AGG | + | chr5_4:2701430-2701449 | None:intergenic | 40.0% | |
| CGAAGATCAATACTAGACTG+CGG | - | chr5_4:2701500-2701519 | Msa0829650:intron | 40.0% | |
| CAATACTAGACTGCGGAATT+TGG | - | chr5_4:2701507-2701526 | Msa0829650:intron | 40.0% | |
| CAGTTGGATTTAGCAACATC+AGG | - | chr5_4:2701686-2701705 | Msa0829650:intron | 40.0% | |
| CGAACGGTAGTATTTCACTA+TGG | + | chr5_4:2702303-2702322 | None:intergenic | 40.0% | |
| TGTGCCTAATTGATGTGTTC+CGG | + | chr5_4:2702631-2702650 | None:intergenic | 40.0% | |
| GAACACATCAATTAGGCACA+TGG | - | chr5_4:2702631-2702650 | Msa0829650:intron | 40.0% | |
| TCAATTTCACGGCCATCTAA+AGG | + | chr5_4:2702686-2702705 | None:intergenic | 40.0% | |
| CCGTTGCCAACATAAAAACT+TGG | + | chr5_4:2702717-2702736 | None:intergenic | 40.0% | |
| GGTTGCTATGTATAATGTGC+TGG | - | chr5_4:2702764-2702783 | Msa0829650:intron | 40.0% | |
| GTTGAAGTTGGAATCAAGGA+AGG | - | chr5_4:2702821-2702840 | Msa0829650:intron | 40.0% | |
| ACTGCAAAATATGGTGACCA+AGG | - | chr5_4:2702897-2702916 | Msa0829650:intron | 40.0% | |
| CAAAATATGGTGACCAAGGA+TGG | - | chr5_4:2702901-2702920 | Msa0829650:intron | 40.0% | |
| TGAGAAAGATCATCCATCCT+TGG | + | chr5_4:2702917-2702936 | None:intergenic | 40.0% | |
| ACACACAGTTAGGTATCCAT+TGG | + | chr5_4:2702958-2702977 | None:intergenic | 40.0% | |
| CTGTCATAACACACACAGTT+AGG | + | chr5_4:2702968-2702987 | None:intergenic | 40.0% | |
| AACTGTGTGTGTTATGACAG+TGG | - | chr5_4:2702968-2702987 | Msa0829650:intron | 40.0% | |
| AAACTTGCCTTGTAACCTCT+TGG | + | chr5_4:2702996-2703015 | None:intergenic | 40.0% | |
| TTCGGAGTTTGTATTGTTGC+AGG | - | chr5_4:2703203-2703222 | Msa0829650:intron | 40.0% | |
| TCGGAGTTTGTATTGTTGCA+GGG | - | chr5_4:2703204-2703223 | Msa0829650:intron | 40.0% | |
| ! | CTTGTCCTTTGTCTTTTGAC+GGG | - | chr5_4:2703255-2703274 | Msa0829650:intron | 40.0% |
| !! | CTTTTGACGGGTATATTTGC+CGG | - | chr5_4:2703267-2703286 | Msa0829650:intron | 40.0% |
| TATGGACGAAAATAGCTGCA+TGG | + | chr5_4:2703571-2703590 | None:intergenic | 40.0% | |
| GCAAGGTTGTTTGGAGAAAG+TGG | + | chr5_4:2699632-2699651 | None:intergenic | 45.0% | |
| CAGAGTTTGGCAAGGTTGTT+TGG | + | chr5_4:2699641-2699660 | None:intergenic | 45.0% | |
| GAAGACTACGTACGTATGTC+AGG | - | chr5_4:2700050-2700069 | Msa0829650:intron | 45.0% | |
| AACATAGTGAGGCACAGATC+TGG | + | chr5_4:2700146-2700165 | None:intergenic | 45.0% | |
| CCTCTTCTGGTAACATAGTG+AGG | + | chr5_4:2700157-2700176 | None:intergenic | 45.0% | |
| CCTCACTATGTTACCAGAAG+AGG | - | chr5_4:2700154-2700173 | Msa0829650:CDS | 45.0% | |
| AGAGAGAATGAAGGCAAGTC+TGG | + | chr5_4:2700292-2700311 | None:intergenic | 45.0% | |
| ATTGAACAAGTGGGGTGGAA+TGG | - | chr5_4:2700907-2700926 | Msa0829650:intron | 45.0% | |
| ATAACTGCTAGCAATGGCAC+TGG | - | chr5_4:2700941-2700960 | Msa0829650:intron | 45.0% | |
| ! | GACTTGGTTCCCTTGTATCA+TGG | - | chr5_4:2701172-2701191 | Msa0829650:intron | 45.0% |
| TGGAACAGCATGTTGACCAT+AGG | - | chr5_4:2701192-2701211 | Msa0829650:intron | 45.0% | |
| CGAGACGTAAGTTACTTACC+GGG | + | chr5_4:2701239-2701258 | None:intergenic | 45.0% | |
| CCGAGACGTAAGTTACTTAC+CGG | + | chr5_4:2701240-2701259 | None:intergenic | 45.0% | |
| CCGGTAAGTAACTTACGTCT+CGG | - | chr5_4:2701237-2701256 | Msa0829650:intron | 45.0% | |
| GATTTAGCAACATCAGGGAG+AGG | - | chr5_4:2701692-2701711 | Msa0829650:intron | 45.0% | |
| GGTGGAATTGGACCTTACAT+TGG | - | chr5_4:2701713-2701732 | Msa0829650:intron | 45.0% | |
| AGATCAACCTGCACAAACTC+CGG | + | chr5_4:2701821-2701840 | None:intergenic | 45.0% | |
| GTTATGCAGTCTTACCTTGC+TGG | - | chr5_4:2701950-2701969 | Msa0829650:intron | 45.0% | |
| ! | ATCTCACAATGGACTTCGCA+AGG | - | chr5_4:2702036-2702055 | Msa0829650:intron | 45.0% |
| ! | TCTCACAATGGACTTCGCAA+GGG | - | chr5_4:2702037-2702056 | Msa0829650:intron | 45.0% |
| TGATCAAGTGAATGCGTGAG+AGG | + | chr5_4:2702091-2702110 | None:intergenic | 45.0% | |
| ! | AACAGTTTTCGATCCCTCTG+AGG | + | chr5_4:2702333-2702352 | None:intergenic | 45.0% |
| TTGGCAACGGTGATCTTTGT+AGG | - | chr5_4:2702727-2702746 | Msa0829650:intron | 45.0% | |
| TCATTCTTGGGACTCACCAA+TGG | - | chr5_4:2702939-2702958 | Msa0829650:intron | 45.0% | |
| ! | TTTCCCAAAGCATTCTGCTC+AGG | + | chr5_4:2703231-2703250 | None:intergenic | 45.0% |
| ! | CTTGACTGGTTGTGGATCAT+AGG | - | chr5_4:2703297-2703316 | Msa0829650:intron | 45.0% |
| !! | AAAAAAAATCAAATTATTAT+CGG | + | chr5_4:2703113-2703132 | None:intergenic | 5.0% |
| AAGTGTGTTTCCTCGTGGGT+AGG | - | chr5_4:2699906-2699925 | Msa0829650:intron | 50.0% | |
| GATTGAGCCGCCAATGTGAA+TGG | - | chr5_4:2700022-2700041 | Msa0829650:intron | 50.0% | |
| ! | TGAGGCACAGATCTGGTTTC+TGG | + | chr5_4:2700139-2700158 | None:intergenic | 50.0% |
| ACTGGAGAACCAAGAAAGCC+AGG | - | chr5_4:2700959-2700978 | Msa0829650:intron | 50.0% | |
| CTGGAGAACCAAGAAAGCCA+GGG | - | chr5_4:2700960-2700979 | Msa0829650:intron | 50.0% | |
| TGGAGAACCAAGAAAGCCAG+GGG | - | chr5_4:2700961-2700980 | Msa0829650:intron | 50.0% | |
| ! | AAAGATGGAGCACTTACCCC+TGG | + | chr5_4:2700980-2700999 | None:intergenic | 50.0% |
| ! | ACTTACGTCTCGGCTTGACA+TGG | - | chr5_4:2701247-2701266 | Msa0829650:intron | 50.0% |
| ACTAGACTGCGGAATTTGGC+TGG | - | chr5_4:2701511-2701530 | Msa0829650:CDS | 50.0% | |
| TTAGCAACATCAGGGAGAGG+TGG | - | chr5_4:2701695-2701714 | Msa0829650:intron | 50.0% | |
| ACATCAGGGAGAGGTGGAAT+TGG | - | chr5_4:2701701-2701720 | Msa0829650:intron | 50.0% | |
| ATTGCCGACGCTCACATTGA+AGG | - | chr5_4:2701764-2701783 | Msa0829650:intron | 50.0% | |
| CACATTGAAGGTGGCATGGT+TGG | - | chr5_4:2701776-2701795 | Msa0829650:intron | 50.0% | |
| GATCAACCTGCACAAACTCC+GGG | + | chr5_4:2701820-2701839 | None:intergenic | 50.0% | |
| CTGATGCTGACAAACCAGCA+AGG | + | chr5_4:2701967-2701986 | None:intergenic | 50.0% | |
| !! | CTTGCTGGTTTGTCAGCATC+AGG | - | chr5_4:2701965-2701984 | Msa0829650:intron | 50.0% |
| GTTATGACAGTGGCACCAAG+AGG | - | chr5_4:2702978-2702997 | Msa0829650:intron | 50.0% | |
| AGTGGCACCAAGAGGTTACA+AGG | - | chr5_4:2702986-2703005 | Msa0829650:intron | 50.0% | |
| GGTCCTGAGCAGAATGCTTT+GGG | - | chr5_4:2703225-2703244 | Msa0829650:intron | 50.0% | |
| CAACCAGTCAAGAACAGCAC+CGG | + | chr5_4:2703289-2703308 | None:intergenic | 50.0% | |
| ! | GTGCTGTTCTTGACTGGTTG+TGG | - | chr5_4:2703289-2703308 | Msa0829650:intron | 50.0% |
| CAAGTGGGGTGGAATGGTCA+TGG | - | chr5_4:2700913-2700932 | Msa0829650:intron | 55.0% | |
| ! | GCACTTACCCCTGGCTTTCT+TGG | + | chr5_4:2700971-2700990 | None:intergenic | 55.0% |
| GCCACCTTCAATGTGAGCGT+CGG | + | chr5_4:2701771-2701790 | None:intergenic | 55.0% | |
| CGCTCACATTGAAGGTGGCA+TGG | - | chr5_4:2701772-2701791 | Msa0829650:intron | 55.0% | |
| TATGTGCCCGGAGTTTGTGC+AGG | - | chr5_4:2701811-2701830 | Msa0829650:intron | 55.0% | |
| !! | CCTCTGAGGCTGCTTTCGAA+CGG | + | chr5_4:2702319-2702338 | None:intergenic | 55.0% |
| CGTTCGAAAGCAGCCTCAGA+GGG | - | chr5_4:2702317-2702336 | Msa0829650:intron | 55.0% | |
| TTTGGATGCCAGCAGCAGCT+AGG | + | chr5_4:2702364-2702383 | None:intergenic | 55.0% | |
| GGGTCCTGAGCAGAATGCTT+TGG | - | chr5_4:2703224-2703243 | Msa0829650:intron | 55.0% | |
| !! | TTGCCGGTGCTGTTCTTGAC+TGG | - | chr5_4:2703283-2703302 | Msa0829650:intron | 55.0% |
| GCCGACGCTCACATTGAAGG+TGG | - | chr5_4:2701767-2701786 | Msa0829650:intron | 60.0% | |
| CCGTTCGAAAGCAGCCTCAG+AGG | - | chr5_4:2702316-2702335 | Msa0829650:intron | 60.0% | |
| GCAGCTGACCTAGCTGCTGC+TGG | - | chr5_4:2702353-2702372 | Msa0829650:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 2699241 | 2703840 | 2699241 | ID=Msa0829650;Name=Msa0829650 |
| chr5_4 | mRNA | 2699241 | 2703840 | 2699241 | ID=Msa0829650-mRNA-1;Parent=Msa0829650;Name=Msa0829650-mRNA-1;_AED=0.36;_eAED=0.36;_QI=274|1|1|1|0.88|0.9|10|505|425 |
| chr5_4 | exon | 2699241 | 2699856 | 2699241 | ID=Msa0829650-mRNA-1:exon:952;Parent=Msa0829650-mRNA-1 |
| chr5_4 | exon | 2700074 | 2700332 | 2700074 | ID=Msa0829650-mRNA-1:exon:951;Parent=Msa0829650-mRNA-1 |
| chr5_4 | exon | 2700429 | 2700589 | 2700429 | ID=Msa0829650-mRNA-1:exon:950;Parent=Msa0829650-mRNA-1 |
| chr5_4 | exon | 2700678 | 2700856 | 2700678 | ID=Msa0829650-mRNA-1:exon:949;Parent=Msa0829650-mRNA-1 |
| chr5_4 | exon | 2701017 | 2701122 | 2701017 | ID=Msa0829650-mRNA-1:exon:948;Parent=Msa0829650-mRNA-1 |
| chr5_4 | exon | 2701249 | 2701392 | 2701249 | ID=Msa0829650-mRNA-1:exon:947;Parent=Msa0829650-mRNA-1 |
| chr5_4 | exon | 2701508 | 2701663 | 2701508 | ID=Msa0829650-mRNA-1:exon:946;Parent=Msa0829650-mRNA-1 |
| chr5_4 | exon | 2701842 | 2701946 | 2701842 | ID=Msa0829650-mRNA-1:exon:945;Parent=Msa0829650-mRNA-1 |
| chr5_4 | exon | 2702099 | 2702191 | 2702099 | ID=Msa0829650-mRNA-1:exon:944;Parent=Msa0829650-mRNA-1 |
| chr5_4 | exon | 2703603 | 2703840 | 2703603 | ID=Msa0829650-mRNA-1:exon:943;Parent=Msa0829650-mRNA-1 |
| chr5_4 | five_prime_UTR | 2703603 | 2703840 | 2703603 | ID=Msa0829650-mRNA-1:five_prime_utr;Parent=Msa0829650-mRNA-1 |
| chr5_4 | five_prime_UTR | 2702156 | 2702191 | 2702156 | ID=Msa0829650-mRNA-1:five_prime_utr;Parent=Msa0829650-mRNA-1 |
| chr5_4 | CDS | 2702099 | 2702155 | 2702099 | ID=Msa0829650-mRNA-1:cds;Parent=Msa0829650-mRNA-1 |
| chr5_4 | CDS | 2701842 | 2701946 | 2701842 | ID=Msa0829650-mRNA-1:cds;Parent=Msa0829650-mRNA-1 |
| chr5_4 | CDS | 2701508 | 2701663 | 2701508 | ID=Msa0829650-mRNA-1:cds;Parent=Msa0829650-mRNA-1 |
| chr5_4 | CDS | 2701249 | 2701392 | 2701249 | ID=Msa0829650-mRNA-1:cds;Parent=Msa0829650-mRNA-1 |
| chr5_4 | CDS | 2701017 | 2701122 | 2701017 | ID=Msa0829650-mRNA-1:cds;Parent=Msa0829650-mRNA-1 |
| chr5_4 | CDS | 2700678 | 2700856 | 2700678 | ID=Msa0829650-mRNA-1:cds;Parent=Msa0829650-mRNA-1 |
| chr5_4 | CDS | 2700429 | 2700589 | 2700429 | ID=Msa0829650-mRNA-1:cds;Parent=Msa0829650-mRNA-1 |
| chr5_4 | CDS | 2700074 | 2700332 | 2700074 | ID=Msa0829650-mRNA-1:cds;Parent=Msa0829650-mRNA-1 |
| chr5_4 | CDS | 2699746 | 2699856 | 2699746 | ID=Msa0829650-mRNA-1:cds;Parent=Msa0829650-mRNA-1 |
| chr5_4 | three_prime_UTR | 2699241 | 2699745 | 2699241 | ID=Msa0829650-mRNA-1:three_prime_utr;Parent=Msa0829650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
