AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0234090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0234090 MtrunA17_Chr2g0282361 87.500 256 13 5 1 241 1 252 5.30e-136 383
Msa0234090 MtrunA17_Chr4g0047141 68.205 195 48 9 65 248 50 241 2.63e-64 201
Msa0234090 MtrunA17_Chr2g0317321 56.716 201 59 7 61 242 51 242 3.95e-53 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0234090 AT1G28280.2 57.025 242 62 11 34 242 7 239 7.86e-66 205
Msa0234090 AT1G28280.1 56.846 241 62 11 34 241 7 238 2.47e-65 204
Msa0234090 AT3G15300.1 50.249 201 64 12 65 242 29 216 4.61e-38 133
Msa0234090 AT5G53830.1 52.970 202 54 12 72 239 45 239 6.98e-37 130
Msa0234090 AT2G33780.1 44.503 191 79 7 66 245 26 200 5.86e-33 119
Msa0234090 AT1G80450.1 36.842 171 84 8 76 242 15 165 1.54e-13 67.4
Msa0234090 AT5G08480.2 35.673 171 91 6 76 243 17 171 7.75e-11 59.7
Msa0234090 AT5G08480.3 35.673 171 91 6 76 243 17 171 7.75e-11 59.7

Find 62 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACAAATGTTGTTGGATA+TGG 0.219375 2_2:+6580055 None:intergenic
GAATAACCGGATCGGTTAAA+TGG 0.240342 2_2:+6579728 None:intergenic
GAAACTTGAGTTGGAGAAAA+TGG 0.246762 2_2:+6579841 None:intergenic
ACCTGGTTCGGATCTTGTTA+TGG 0.250404 2_2:+6580081 None:intergenic
CCTGGTTCGGATCTTGTTAT+GGG 0.271576 2_2:+6580082 None:intergenic
TGCTAGAAATGGTTCTTCTT+TGG 0.294813 2_2:-6579699 Msa0234090:CDS
CAAGTTGTTCAAATGTTAAC+TGG 0.300641 2_2:-6580010 Msa0234090:CDS
TGGGTCTTGGTGAAGGAATT+TGG 0.302573 2_2:+6580155 None:intergenic
ACTACTTCTCCTAGGGCTTC+AGG 0.309005 2_2:-6579566 Msa0234090:CDS
GAGAAAATGGGTGGTAATAA+AGG 0.316316 2_2:+6579854 None:intergenic
TTGTGTCCATTACTTGTTAT+GGG 0.319171 2_2:+6580136 None:intergenic
GTTGTGTCCATTACTTGTTA+TGG 0.323237 2_2:+6580135 None:intergenic
TCGGGTATGAGTGGTGTAAC+CGG 0.325510 2_2:+6579752 None:intergenic
CCATTACTTGTTATGGGTCT+TGG 0.332135 2_2:+6580142 None:intergenic
TGGGTCTTGGTGATTGAATT+TGG 0.337028 2_2:+6580101 None:intergenic
GTAATAAAGGGTTAATGTTA+AGG 0.349071 2_2:+6579867 None:intergenic
TCGGATCTTGTTATGGGTCT+TGG 0.376668 2_2:+6580088 None:intergenic
TTGGTGGAATGTTATGGTTA+TGG 0.382884 2_2:+6579942 None:intergenic
GATAAAGCTATAAGAGAAAA+GGG 0.393487 2_2:-6579662 Msa0234090:CDS
TTGGTGATTGAATTTGGTTA+TGG 0.403350 2_2:+6580107 None:intergenic
GTCTCTAGGAGTTGAAGCTC+TGG 0.403528 2_2:+6579619 None:intergenic
ATTGAATTTGGTTATGGCTA+TGG 0.404356 2_2:+6580113 None:intergenic
TATTCTTCTGCTGCTAGAAA+TGG 0.410030 2_2:-6579710 Msa0234090:CDS
TGGATATGGGTTACCTGGTT+CGG 0.412484 2_2:+6580069 None:intergenic
AAGGAATTTGGTTATGGCTA+TGG 0.434064 2_2:+6580167 None:intergenic
TTGGTGAAGGAATTTGGTTA+TGG 0.445585 2_2:+6580161 None:intergenic
AGATAAAGCTATAAGAGAAA+AGG 0.448878 2_2:-6579663 Msa0234090:CDS
GAACAAATGTTGTTGGATAT+GGG 0.451854 2_2:+6580056 None:intergenic
GAGCAAGAGAAGGAAAATCT+AGG 0.454989 2_2:+6579780 None:intergenic
TCCTTCTCTTGCTCTTAGCC+CGG 0.462751 2_2:-6579771 Msa0234090:CDS
TCTAGCAGCAGAAGAATAAC+CGG 0.465008 2_2:+6579715 None:intergenic
AATAACCGGATCGGTTAAAT+GGG 0.468362 2_2:+6579729 None:intergenic
GGAATGTTATGGTTATGGTT+TGG 0.475070 2_2:+6579947 None:intergenic
TCAGCTTGAACAAATGTTGT+TGG 0.479156 2_2:+6580049 None:intergenic
CCGGATCGGTTAAATGGGTC+GGG 0.492665 2_2:+6579734 None:intergenic
CCCGACCCATTTAACCGATC+CGG 0.495027 2_2:-6579734 Msa0234090:CDS
AGAAAATGGGTGGTAATAAA+GGG 0.497203 2_2:+6579855 None:intergenic
CCAAGACCCATAACAAGTAA+TGG 0.503842 2_2:-6580142 Msa0234090:CDS
CTTGTTATGGGTCTTGGTGA+AGG 0.506753 2_2:+6580148 None:intergenic
TCAAATGTTAACTGGTTCCT+CGG 0.513372 2_2:-6580002 Msa0234090:CDS
GGAGTTGAAGCTCTGGGAGA+AGG 0.513871 2_2:+6579626 None:intergenic
GAAGGAAAATCTAGGATACT+AGG 0.515704 2_2:+6579788 None:intergenic
CGGGTATGAGTGGTGTAACC+GGG 0.519254 2_2:+6579753 None:intergenic
CATTGATGATGTGGAATCCA+TGG 0.533309 2_2:+6580273 None:intergenic
ACCGGATCGGTTAAATGGGT+CGG 0.534670 2_2:+6579733 None:intergenic
AAACTTGAGTTGGAGAAAAT+GGG 0.542299 2_2:+6579842 None:intergenic
GTTGTTGGATATGGGTTACC+TGG 0.543727 2_2:+6580064 None:intergenic
TTGGTATCTCATTGATGATG+TGG 0.551120 2_2:+6580264 None:intergenic
GAAGCCCTAGGAGAAGTAGT+AGG 0.571572 2_2:+6579569 None:intergenic
CAAACTCAAACTCAAAGCAA+TGG 0.576732 2_2:-6580196 Msa0234090:CDS
GATGAAGGACCTGAAGCCCT+AGG 0.577284 2_2:+6579557 None:intergenic
TCTCTAGGAGTTGAAGCTCT+GGG 0.580776 2_2:+6579620 None:intergenic
AAACGAGGTTCAGAGTCTCT+AGG 0.581466 2_2:+6579605 None:intergenic
ACGAGGTGAGAAACTTGAGT+TGG 0.589923 2_2:+6579832 None:intergenic
CCCATAACAAGATCCGAACC+AGG 0.590432 2_2:-6580082 Msa0234090:CDS
TTAAATGGGTCGGGTATGAG+TGG 0.616779 2_2:+6579743 None:intergenic
AAGATCTCTTGTTTGTTACG+AGG 0.644449 2_2:+6579815 None:intergenic
TTGAACAACTTGTTTGAACG+AGG 0.648447 2_2:+6580021 None:intergenic
CAGCAGAAGAATAACCGGAT+CGG 0.656027 2_2:+6579720 None:intergenic
ACCGGGCTAAGAGCAAGAGA+AGG 0.662342 2_2:+6579770 None:intergenic
CTTGAGTTGGAGAAAATGGG+TGG 0.666617 2_2:+6579845 None:intergenic
ATCATCAATGAGATACCAAG+AGG 0.685459 2_2:-6580260 Msa0234090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAAACCTTGTTGTTTTTT+TGG + chr2_2:6579883-6579902 None:intergenic 25.0%
! GTAATAAAGGGTTAATGTTA+AGG + chr2_2:6579939-6579958 None:intergenic 25.0%
! AGATAAAGCTATAAGAGAAA+AGG - chr2_2:6580140-6580159 Msa0234090:CDS 25.0%
! GATAAAGCTATAAGAGAAAA+GGG - chr2_2:6580141-6580160 Msa0234090:CDS 25.0%
!!! GAATATTTTGAAGAAGATGA+AGG + chr2_2:6580264-6580283 None:intergenic 25.0%
!!! TTGAAACCTTGTTGTTTTTT+TGG + chr2_2:6579883-6579902 None:intergenic 25.0%
! GTAATAAAGGGTTAATGTTA+AGG + chr2_2:6579939-6579958 None:intergenic 25.0%
! AGATAAAGCTATAAGAGAAA+AGG - chr2_2:6580140-6580159 Msa0234090:CDS 25.0%
! GATAAAGCTATAAGAGAAAA+GGG - chr2_2:6580141-6580160 Msa0234090:CDS 25.0%
!!! GAATATTTTGAAGAAGATGA+AGG + chr2_2:6580264-6580283 None:intergenic 25.0%
!! TGAGTTTGAGTTTGAGTTTT+TGG + chr2_2:6579601-6579620 None:intergenic 30.0%
!! TTGTGTCCATTACTTGTTAT+GGG + chr2_2:6579670-6579689 None:intergenic 30.0%
ATTGAATTTGGTTATGGCTA+TGG + chr2_2:6579693-6579712 None:intergenic 30.0%
! TTGGTGATTGAATTTGGTTA+TGG + chr2_2:6579699-6579718 None:intergenic 30.0%
GAACAAATGTTGTTGGATAT+GGG + chr2_2:6579750-6579769 None:intergenic 30.0%
TGAACAAATGTTGTTGGATA+TGG + chr2_2:6579751-6579770 None:intergenic 30.0%
CAAGTTGTTCAAATGTTAAC+TGG - chr2_2:6579793-6579812 Msa0234090:CDS 30.0%
!!! GTTTTTTTGGTGGAATGTTA+TGG + chr2_2:6579870-6579889 None:intergenic 30.0%
ATTCCACCAAAAAAACAACA+AGG - chr2_2:6579874-6579893 Msa0234090:CDS 30.0%
!!! AAACCTTGTTGTTTTTTTGG+TGG + chr2_2:6579880-6579899 None:intergenic 30.0%
AGAAAATGGGTGGTAATAAA+GGG + chr2_2:6579951-6579970 None:intergenic 30.0%
!! AAACTTGAGTTGGAGAAAAT+GGG + chr2_2:6579964-6579983 None:intergenic 30.0%
!! TGAGTTTGAGTTTGAGTTTT+TGG + chr2_2:6579601-6579620 None:intergenic 30.0%
!! TTGTGTCCATTACTTGTTAT+GGG + chr2_2:6579670-6579689 None:intergenic 30.0%
ATTGAATTTGGTTATGGCTA+TGG + chr2_2:6579693-6579712 None:intergenic 30.0%
! TTGGTGATTGAATTTGGTTA+TGG + chr2_2:6579699-6579718 None:intergenic 30.0%
GAACAAATGTTGTTGGATAT+GGG + chr2_2:6579750-6579769 None:intergenic 30.0%
TGAACAAATGTTGTTGGATA+TGG + chr2_2:6579751-6579770 None:intergenic 30.0%
CAAGTTGTTCAAATGTTAAC+TGG - chr2_2:6579793-6579812 Msa0234090:CDS 30.0%
!!! GTTTTTTTGGTGGAATGTTA+TGG + chr2_2:6579870-6579889 None:intergenic 30.0%
ATTCCACCAAAAAAACAACA+AGG - chr2_2:6579874-6579893 Msa0234090:CDS 30.0%
!!! AAACCTTGTTGTTTTTTTGG+TGG + chr2_2:6579880-6579899 None:intergenic 30.0%
AGAAAATGGGTGGTAATAAA+GGG + chr2_2:6579951-6579970 None:intergenic 30.0%
!! AAACTTGAGTTGGAGAAAAT+GGG + chr2_2:6579964-6579983 None:intergenic 30.0%
!! TTGGTATCTCATTGATGATG+TGG + chr2_2:6579542-6579561 None:intergenic 35.0%
ATCATCAATGAGATACCAAG+AGG - chr2_2:6579543-6579562 Msa0234090:CDS 35.0%
! GAGATGATTTTTGTTCCTCT+TGG + chr2_2:6579561-6579580 None:intergenic 35.0%
!!! TGAGTTTGAGTTTTTGGTGA+AGG + chr2_2:6579595-6579614 None:intergenic 35.0%
CAAACTCAAACTCAAAGCAA+TGG - chr2_2:6579607-6579626 Msa0234090:CDS 35.0%
AAGGAATTTGGTTATGGCTA+TGG + chr2_2:6579639-6579658 None:intergenic 35.0%
TTGGTGAAGGAATTTGGTTA+TGG + chr2_2:6579645-6579664 None:intergenic 35.0%
! GTTGTGTCCATTACTTGTTA+TGG + chr2_2:6579671-6579690 None:intergenic 35.0%
TCAGCTTGAACAAATGTTGT+TGG + chr2_2:6579757-6579776 None:intergenic 35.0%
! TTGAACAACTTGTTTGAACG+AGG + chr2_2:6579785-6579804 None:intergenic 35.0%
! TCAAATGTTAACTGGTTCCT+CGG - chr2_2:6579801-6579820 Msa0234090:CDS 35.0%
GGAATGTTATGGTTATGGTT+TGG + chr2_2:6579859-6579878 None:intergenic 35.0%
TTGGTGGAATGTTATGGTTA+TGG + chr2_2:6579864-6579883 None:intergenic 35.0%
GAGAAAATGGGTGGTAATAA+AGG + chr2_2:6579952-6579971 None:intergenic 35.0%
!! GAAACTTGAGTTGGAGAAAA+TGG + chr2_2:6579965-6579984 None:intergenic 35.0%
! AAGATCTCTTGTTTGTTACG+AGG + chr2_2:6579991-6580010 None:intergenic 35.0%
! GAAGGAAAATCTAGGATACT+AGG + chr2_2:6580018-6580037 None:intergenic 35.0%
AATAACCGGATCGGTTAAAT+GGG + chr2_2:6580077-6580096 None:intergenic 35.0%
TATTCTTCTGCTGCTAGAAA+TGG - chr2_2:6580093-6580112 Msa0234090:CDS 35.0%
TGCTAGAAATGGTTCTTCTT+TGG - chr2_2:6580104-6580123 Msa0234090:CDS 35.0%
! TTTTTCCTACTACTTCTCCT+AGG - chr2_2:6580229-6580248 Msa0234090:CDS 35.0%
! TTTTCCTACTACTTCTCCTA+GGG - chr2_2:6580230-6580249 Msa0234090:CDS 35.0%
!! TTGGTATCTCATTGATGATG+TGG + chr2_2:6579542-6579561 None:intergenic 35.0%
ATCATCAATGAGATACCAAG+AGG - chr2_2:6579543-6579562 Msa0234090:CDS 35.0%
! GAGATGATTTTTGTTCCTCT+TGG + chr2_2:6579561-6579580 None:intergenic 35.0%
!!! TGAGTTTGAGTTTTTGGTGA+AGG + chr2_2:6579595-6579614 None:intergenic 35.0%
CAAACTCAAACTCAAAGCAA+TGG - chr2_2:6579607-6579626 Msa0234090:CDS 35.0%
AAGGAATTTGGTTATGGCTA+TGG + chr2_2:6579639-6579658 None:intergenic 35.0%
TTGGTGAAGGAATTTGGTTA+TGG + chr2_2:6579645-6579664 None:intergenic 35.0%
! GTTGTGTCCATTACTTGTTA+TGG + chr2_2:6579671-6579690 None:intergenic 35.0%
TCAGCTTGAACAAATGTTGT+TGG + chr2_2:6579757-6579776 None:intergenic 35.0%
! TTGAACAACTTGTTTGAACG+AGG + chr2_2:6579785-6579804 None:intergenic 35.0%
! TCAAATGTTAACTGGTTCCT+CGG - chr2_2:6579801-6579820 Msa0234090:CDS 35.0%
GGAATGTTATGGTTATGGTT+TGG + chr2_2:6579859-6579878 None:intergenic 35.0%
TTGGTGGAATGTTATGGTTA+TGG + chr2_2:6579864-6579883 None:intergenic 35.0%
GAGAAAATGGGTGGTAATAA+AGG + chr2_2:6579952-6579971 None:intergenic 35.0%
!! GAAACTTGAGTTGGAGAAAA+TGG + chr2_2:6579965-6579984 None:intergenic 35.0%
! AAGATCTCTTGTTTGTTACG+AGG + chr2_2:6579991-6580010 None:intergenic 35.0%
! GAAGGAAAATCTAGGATACT+AGG + chr2_2:6580018-6580037 None:intergenic 35.0%
AATAACCGGATCGGTTAAAT+GGG + chr2_2:6580077-6580096 None:intergenic 35.0%
TATTCTTCTGCTGCTAGAAA+TGG - chr2_2:6580093-6580112 Msa0234090:CDS 35.0%
TGCTAGAAATGGTTCTTCTT+TGG - chr2_2:6580104-6580123 Msa0234090:CDS 35.0%
! TTTTTCCTACTACTTCTCCT+AGG - chr2_2:6580229-6580248 Msa0234090:CDS 35.0%
! TTTTCCTACTACTTCTCCTA+GGG - chr2_2:6580230-6580249 Msa0234090:CDS 35.0%
!! CCATTACTTGTTATGGGTCT+TGG + chr2_2:6579664-6579683 None:intergenic 40.0%
CCAAGACCCATAACAAGTAA+TGG - chr2_2:6579661-6579680 Msa0234090:CDS 40.0%
! TGGGTCTTGGTGATTGAATT+TGG + chr2_2:6579705-6579724 None:intergenic 40.0%
GAGCAAGAGAAGGAAAATCT+AGG + chr2_2:6580026-6580045 None:intergenic 40.0%
GAATAACCGGATCGGTTAAA+TGG + chr2_2:6580078-6580097 None:intergenic 40.0%
TCTAGCAGCAGAAGAATAAC+CGG + chr2_2:6580091-6580110 None:intergenic 40.0%
GGAGAAGTAGTAGGAAAAAG+AGG + chr2_2:6580228-6580247 None:intergenic 40.0%
!! CCATTACTTGTTATGGGTCT+TGG + chr2_2:6579664-6579683 None:intergenic 40.0%
CCAAGACCCATAACAAGTAA+TGG - chr2_2:6579661-6579680 Msa0234090:CDS 40.0%
! TGGGTCTTGGTGATTGAATT+TGG + chr2_2:6579705-6579724 None:intergenic 40.0%
GAGCAAGAGAAGGAAAATCT+AGG + chr2_2:6580026-6580045 None:intergenic 40.0%
GAATAACCGGATCGGTTAAA+TGG + chr2_2:6580078-6580097 None:intergenic 40.0%
TCTAGCAGCAGAAGAATAAC+CGG + chr2_2:6580091-6580110 None:intergenic 40.0%
GGAGAAGTAGTAGGAAAAAG+AGG + chr2_2:6580228-6580247 None:intergenic 40.0%
TGGGTCTTGGTGAAGGAATT+TGG + chr2_2:6579651-6579670 None:intergenic 45.0%
! CTTGTTATGGGTCTTGGTGA+AGG + chr2_2:6579658-6579677 None:intergenic 45.0%
! TCGGATCTTGTTATGGGTCT+TGG + chr2_2:6579718-6579737 None:intergenic 45.0%
!! CCTGGTTCGGATCTTGTTAT+GGG + chr2_2:6579724-6579743 None:intergenic 45.0%
!! ACCTGGTTCGGATCTTGTTA+TGG + chr2_2:6579725-6579744 None:intergenic 45.0%
! TGGATATGGGTTACCTGGTT+CGG + chr2_2:6579737-6579756 None:intergenic 45.0%
! GTTGTTGGATATGGGTTACC+TGG + chr2_2:6579742-6579761 None:intergenic 45.0%
!! CTTGAGTTGGAGAAAATGGG+TGG + chr2_2:6579961-6579980 None:intergenic 45.0%
ACGAGGTGAGAAACTTGAGT+TGG + chr2_2:6579974-6579993 None:intergenic 45.0%
TTAAATGGGTCGGGTATGAG+TGG + chr2_2:6580063-6580082 None:intergenic 45.0%
CAGCAGAAGAATAACCGGAT+CGG + chr2_2:6580086-6580105 None:intergenic 45.0%
! TCTCTAGGAGTTGAAGCTCT+GGG + chr2_2:6580186-6580205 None:intergenic 45.0%
AAACGAGGTTCAGAGTCTCT+AGG + chr2_2:6580201-6580220 None:intergenic 45.0%
GGAAAAAGAGGAAGCAAACG+AGG + chr2_2:6580216-6580235 None:intergenic 45.0%
TGGGTCTTGGTGAAGGAATT+TGG + chr2_2:6579651-6579670 None:intergenic 45.0%
! CTTGTTATGGGTCTTGGTGA+AGG + chr2_2:6579658-6579677 None:intergenic 45.0%
! TCGGATCTTGTTATGGGTCT+TGG + chr2_2:6579718-6579737 None:intergenic 45.0%
!! CCTGGTTCGGATCTTGTTAT+GGG + chr2_2:6579724-6579743 None:intergenic 45.0%
!! ACCTGGTTCGGATCTTGTTA+TGG + chr2_2:6579725-6579744 None:intergenic 45.0%
! TGGATATGGGTTACCTGGTT+CGG + chr2_2:6579737-6579756 None:intergenic 45.0%
! GTTGTTGGATATGGGTTACC+TGG + chr2_2:6579742-6579761 None:intergenic 45.0%
!! CTTGAGTTGGAGAAAATGGG+TGG + chr2_2:6579961-6579980 None:intergenic 45.0%
ACGAGGTGAGAAACTTGAGT+TGG + chr2_2:6579974-6579993 None:intergenic 45.0%
TTAAATGGGTCGGGTATGAG+TGG + chr2_2:6580063-6580082 None:intergenic 45.0%
CAGCAGAAGAATAACCGGAT+CGG + chr2_2:6580086-6580105 None:intergenic 45.0%
! TCTCTAGGAGTTGAAGCTCT+GGG + chr2_2:6580186-6580205 None:intergenic 45.0%
AAACGAGGTTCAGAGTCTCT+AGG + chr2_2:6580201-6580220 None:intergenic 45.0%
GGAAAAAGAGGAAGCAAACG+AGG + chr2_2:6580216-6580235 None:intergenic 45.0%
CCCATAACAAGATCCGAACC+AGG - chr2_2:6579721-6579740 Msa0234090:CDS 50.0%
!!! AGCTTGTTTTGCTGTCTCCG+AGG + chr2_2:6579821-6579840 None:intergenic 50.0%
TCCTTCTCTTGCTCTTAGCC+CGG - chr2_2:6580032-6580051 Msa0234090:CDS 50.0%
TCGGGTATGAGTGGTGTAAC+CGG + chr2_2:6580054-6580073 None:intergenic 50.0%
ACCGGATCGGTTAAATGGGT+CGG + chr2_2:6580073-6580092 None:intergenic 50.0%
! GTCTCTAGGAGTTGAAGCTC+TGG + chr2_2:6580187-6580206 None:intergenic 50.0%
GAAGCCCTAGGAGAAGTAGT+AGG + chr2_2:6580237-6580256 None:intergenic 50.0%
ACTACTTCTCCTAGGGCTTC+AGG - chr2_2:6580237-6580256 Msa0234090:CDS 50.0%
CCCATAACAAGATCCGAACC+AGG - chr2_2:6579721-6579740 Msa0234090:CDS 50.0%
!!! AGCTTGTTTTGCTGTCTCCG+AGG + chr2_2:6579821-6579840 None:intergenic 50.0%
TCCTTCTCTTGCTCTTAGCC+CGG - chr2_2:6580032-6580051 Msa0234090:CDS 50.0%
TCGGGTATGAGTGGTGTAAC+CGG + chr2_2:6580054-6580073 None:intergenic 50.0%
ACCGGATCGGTTAAATGGGT+CGG + chr2_2:6580073-6580092 None:intergenic 50.0%
! GTCTCTAGGAGTTGAAGCTC+TGG + chr2_2:6580187-6580206 None:intergenic 50.0%
GAAGCCCTAGGAGAAGTAGT+AGG + chr2_2:6580237-6580256 None:intergenic 50.0%
ACTACTTCTCCTAGGGCTTC+AGG - chr2_2:6580237-6580256 Msa0234090:CDS 50.0%
ACCGGGCTAAGAGCAAGAGA+AGG + chr2_2:6580036-6580055 None:intergenic 55.0%
CGGGTATGAGTGGTGTAACC+GGG + chr2_2:6580053-6580072 None:intergenic 55.0%
CCGGATCGGTTAAATGGGTC+GGG + chr2_2:6580072-6580091 None:intergenic 55.0%
CCCGACCCATTTAACCGATC+CGG - chr2_2:6580069-6580088 Msa0234090:CDS 55.0%
!! GGAGTTGAAGCTCTGGGAGA+AGG + chr2_2:6580180-6580199 None:intergenic 55.0%
GATGAAGGACCTGAAGCCCT+AGG + chr2_2:6580249-6580268 None:intergenic 55.0%
ACCGGGCTAAGAGCAAGAGA+AGG + chr2_2:6580036-6580055 None:intergenic 55.0%
CGGGTATGAGTGGTGTAACC+GGG + chr2_2:6580053-6580072 None:intergenic 55.0%
CCGGATCGGTTAAATGGGTC+GGG + chr2_2:6580072-6580091 None:intergenic 55.0%
CCCGACCCATTTAACCGATC+CGG - chr2_2:6580069-6580088 Msa0234090:CDS 55.0%
!! GGAGTTGAAGCTCTGGGAGA+AGG + chr2_2:6580180-6580199 None:intergenic 55.0%
GATGAAGGACCTGAAGCCCT+AGG + chr2_2:6580249-6580268 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 6579532 6580293 6579532 ID=Msa0234090;Name=Msa0234090
chr2_2 mRNA 6579532 6580293 6579532 ID=Msa0234090-mRNA-1;Parent=Msa0234090;Name=Msa0234090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|253
chr2_2 exon 6579532 6580293 6579532 ID=Msa0234090-mRNA-1:exon:2907;Parent=Msa0234090-mRNA-1
chr2_2 CDS 6579532 6580293 6579532 ID=Msa0234090-mRNA-1:cds;Parent=Msa0234090-mRNA-1
Gene Sequence

>Msa0234090

ATGGATTCCACATCATCAATGAGATACCAAGAGGAACAAAAATCATCTCTCACTTCACTACCTTCACCAAAAACTCAAACTCAAACTCAAAGCAATGGACACAACCATAGCCATAACCAAATTCCTTCACCAAGACCCATAACAAGTAATGGACACAACCATAGCCATAACCAAATTCAATCACCAAGACCCATAACAAGATCCGAACCAGGTAACCCATATCCAACAACATTTGTTCAAGCTGACACAACCTCGTTCAAACAAGTTGTTCAAATGTTAACTGGTTCCTCGGAGACAGCAAAACAAGCTTCAAGTTCAACAAAACCAAACCATAACCATAACATTCCACCAAAAAAACAACAAGGTTTCAAACTCTATGAAAGAAGAAACTCATTTCACAAAAACCTTAACATTAACCCTTTATTACCACCCATTTTCTCCAACTCAAGTTTCTCACCTCGTAACAAACAAGAGATCTTGTCACCTAGTATCCTAGATTTTCCTTCTCTTGCTCTTAGCCCGGTTACACCACTCATACCCGACCCATTTAACCGATCCGGTTATTCTTCTGCTGCTAGAAATGGTTCTTCTTTGGATTCTTTAGCTGAAGATAAAGCTATAAGAGAAAAGGGATTCTTTCTGCATCCTTCTCCCAGAGCTTCAACTCCTAGAGACTCTGAACCTCGTTTGCTTCCTCTTTTTCCTACTACTTCTCCTAGGGCTTCAGGTCCTTCATCTTCTTCAAAATATTCTGCATCTTGA

Protein sequence

>Msa0234090

MDSTSSMRYQEEQKSSLTSLPSPKTQTQTQSNGHNHSHNQIPSPRPITSNGHNHSHNQIQSPRPITRSEPGNPYPTTFVQADTTSFKQVVQMLTGSSETAKQASSSTKPNHNHNIPPKKQQGFKLYERRNSFHKNLNINPLLPPIFSNSSFSPRNKQEILSPSILDFPSLALSPVTPLIPDPFNRSGYSSAARNGSSLDSLAEDKAIREKGFFLHPSPRASTPRDSEPRLLPLFPTTSPRASGPSSSSKYSAS*