AlfalfaGEDB | Msa0864940

M. sativa cultivar zhongmu-4 / Msa0864940

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0864940	XP_003618014.1	90.769	195	18	0	1	195	1	195	7.20e-75	234

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0864940	G7K500	90.769	195	18	0	1	195	1	195	3.44e-75	234

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017670	Msa0864940	0.824196	9.199287e-54	-8.615850e-47
Msa0032460	Msa0864940	0.830261	3.244257e-55	-8.615850e-47
Msa0071850	Msa0864940	0.800799	1.216376e-48	-8.615850e-47
Msa0073120	Msa0864940	0.811148	8.091600e-51	-8.615850e-47
Msa0081980	Msa0864940	0.825148	5.490788e-54	-8.615850e-47
Msa0082020	Msa0864940	0.800997	1.108087e-48	-8.615850e-47
Msa0098040	Msa0864940	0.808371	3.200702e-50	-8.615850e-47
Msa0108880	Msa0864940	0.801908	7.211232e-49	-8.615850e-47
Msa0658640	Msa0864940	0.825314	5.015746e-54	-8.615850e-47
Msa0666700	Msa0864940	0.804214	2.405500e-49	-8.615850e-47
Msa0703600	Msa0864940	0.834044	3.763017e-56	-8.615850e-47
Msa0709200	Msa0864940	0.836726	7.905279e-57	-8.615850e-47
Msa0732420	Msa0864940	0.819297	1.250459e-52	-8.615850e-47
Msa0735780	Msa0864940	0.815560	8.682733e-52	-8.615850e-47
Msa0770330	Msa0864940	0.905719	3.189024e-80	-8.615850e-47
Msa0792370	Msa0864940	0.827205	1.778905e-54	-8.615850e-47
Msa0805330	Msa0864940	0.805126	1.551474e-49	-8.615850e-47
Msa0826310	Msa0864940	0.971471	3.237489e-133	-8.615850e-47
Msa0121330	Msa0864940	0.803870	2.835894e-49	-8.615850e-47
Msa0128460	Msa0864940	0.803981	2.688908e-49	-8.615850e-47
Msa0140130	Msa0864940	0.809977	1.448950e-50	-8.615850e-47
Msa0140280	Msa0864940	0.812631	3.846438e-51	-8.615850e-47
Msa0173290	Msa0864940	0.803937	2.746114e-49	-8.615850e-47
Msa0174290	Msa0864940	0.823733	1.181647e-53	-8.615850e-47
Msa0185960	Msa0864940	0.802874	4.559702e-49	-8.615850e-47
Msa0188610	Msa0864940	0.803709	3.063126e-49	-8.615850e-47
Msa0219270	Msa0864940	0.807464	4.991200e-50	-8.615850e-47
Msa0367690	Msa0864940	0.817129	3.869542e-52	-8.615850e-47
Msa0380670	Msa0864940	0.816804	4.578916e-52	-8.615850e-47
Msa0415450	Msa0864940	0.813646	2.303505e-51	-8.615850e-47
Msa0430300	Msa0864940	0.805503	1.293455e-49	-8.615850e-47
Msa0457570	Msa0864940	0.801307	9.576441e-49	-8.615850e-47
Msa0460070	Msa0864940	0.812213	4.746799e-51	-8.615850e-47
Msa0307670	Msa0864940	0.832542	8.909337e-56	-8.615850e-47
Msa0567170	Msa0864940	0.839803	1.273284e-57	-8.615850e-47
Msa0842680	Msa0864940	0.809852	1.541486e-50	-8.615850e-47
Msa0864940	Msa0905240	0.800275	1.555382e-48	-8.615850e-47
Msa0864940	Msa1042190	0.800402	1.465657e-48	-8.615850e-47
Msa0864940	Msa1078820	0.810220	1.284705e-50	-8.615850e-47
Msa0864940	Msa1081690	0.827238	1.747278e-54	-8.615850e-47
Msa0864940	Msa1123970	0.805249	1.462471e-49	-8.615850e-47
Msa0864940	Msa1132530	0.825676	4.117594e-54	-8.615850e-47
Msa0864940	Msa1167470	0.800173	1.631963e-48	-8.615850e-47
Msa0864940	Msa1169650	0.803682	3.102655e-49	-8.615850e-47
Msa0864940	Msa1226520	0.820460	6.780222e-53	-8.615850e-47
Msa0864940	Msa1303650	0.800280	1.552348e-48	-8.615850e-47
Msa0864940	Msa1409410	0.808665	2.769830e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0864940	MtrunA17_Chr5g0447991	90.769	195	18	0	1	195	1	195	6.62e-79	234

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 70 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTATTAAATAATGCTTATTT+TGG	0.137891	5_4:-65528709	None:intergenic
CTTTGTATGATTATGCATTT+TGG	0.148495	5_4:+65530498	Msa0864940:three_prime_UTR
TTCAGCTGAAGATTCTTCTT+TGG	0.248746	5_4:-65529811	None:intergenic
ACCTCAACAGTGGCCATAAT+TGG	0.274025	5_4:-65528970	None:intergenic
TTCTGTTGTTGAGGCTGTTC+AGG	0.288375	5_4:+65530013	Msa0864940:CDS
TCTGATGCTGCTGGTGTGAT+TGG	0.302513	5_4:-65529786	None:intergenic
GTCGAGGAAACAAAAGAAAA+TGG	0.336894	5_4:+65529987	Msa0864940:CDS
TCTATTGGGAGAATGAATTA+TGG	0.354702	5_4:-65528681	None:intergenic
ATTACTGAAAAGGTTACATT+AGG	0.365107	5_4:-65530469	None:intergenic
GTAAGCATGTTTGGCAATAA+TGG	0.367425	5_4:-65528762	None:intergenic
CTCAACAGGTTCCTTTGTCT+CGG	0.374352	5_4:-65529934	None:intergenic
TCTGTCTCAGATTCTGCAGC+TGG	0.400444	5_4:-65530041	None:intergenic
TGGACTCTCAATGATTTCTT+CGG	0.404920	5_4:-65529766	None:intergenic
CTCAGCTTTAACCAAAGGTT+TGG	0.405277	5_4:-65529838	None:intergenic
TTACATTAGGTAAACTCAAA+TGG	0.406842	5_4:-65530456	None:intergenic
GCTTACTAGCATTCAGTGAA+TGG	0.421591	5_4:+65528779	Msa0864940:five_prime_UTR
CCTTACTCACTCTTCTCAGT+TGG	0.426357	5_4:-65530248	None:intergenic
ATTTAGAATGGTTTATATAG+AGG	0.427250	5_4:-65528868	None:intergenic
AGCTGAAGAAGCCAAACCTT+TGG	0.430085	5_4:+65529827	Msa0864940:CDS
TGAGACAGAAAATGTTGTTA+AGG	0.433126	5_4:+65530055	Msa0864940:CDS
TGAATGCTAGTAAGCATGTT+TGG	0.437182	5_4:-65528771	None:intergenic
GGTAGCTGAGGCTGAAACTA+AGG	0.438659	5_4:+65530088	Msa0864940:CDS
ATGTAAATGTCAAATGACTA+AGG	0.440901	5_4:-65530584	None:intergenic
CCAACTGAGAAGAGTGAGTA+AGG	0.442677	5_4:+65530248	Msa0864940:CDS
GGTTGAGAAAGAAGAAGCCT+TGG	0.446199	5_4:+65530157	Msa0864940:CDS
AACAAAGTTAAGATTGCTAT+AGG	0.461132	5_4:-65528925	None:intergenic
TCTTTGGTTTCTGATGCTGC+TGG	0.462673	5_4:-65529795	None:intergenic
CTTACTAGCATTCAGTGAAT+GGG	0.465281	5_4:+65528780	Msa0864940:five_prime_UTR
AAAGGAACATATTACTGAAA+AGG	0.467777	5_4:-65530479	None:intergenic
TACATTAGGTAAACTCAAAT+GGG	0.470364	5_4:-65530455	None:intergenic
TGGTTTATATAGAGGTTTGA+GGG	0.484870	5_4:-65528860	None:intergenic
TCCAATTATGGCCACTGTTG+AGG	0.502667	5_4:+65528969	Msa0864940:exon
AAGTGTTTAATTAGAGAGAG+TGG	0.506459	5_4:+65530293	Msa0864940:three_prime_UTR
TACAGCAGAGGAAACAAAGA+AGG	0.515632	5_4:+65529902	Msa0864940:CDS
AATTGAGAAGAGTGAAGAAG+AGG	0.516526	5_4:+65530223	Msa0864940:CDS
ACTCTCAATGATTTCTTCGG+TGG	0.520132	5_4:-65529763	None:intergenic
GGTTAAAGCTGAGGCAAAAG+AGG	0.520787	5_4:+65529848	Msa0864940:CDS
ATGGTTTATATAGAGGTTTG+AGG	0.531817	5_4:-65528861	None:intergenic
GGAAGAACAAACCGAGACAA+AGG	0.535864	5_4:+65529923	Msa0864940:CDS
AGAAGAGAAAAGTGAGGAGA+AGG	0.537941	5_4:+65530136	Msa0864940:CDS
TTTGCCTCAGCTTTAACCAA+AGG	0.538136	5_4:-65529843	None:intergenic
GTTGAGGAAACAAAAGAAAA+CGG	0.538839	5_4:+65529951	Msa0864940:CDS
TGTAAATGTCAAATGACTAA+GGG	0.557652	5_4:-65530583	None:intergenic
AGCCTTGGATGAAAAGAAAG+AGG	0.562181	5_4:+65530172	Msa0864940:CDS
TGATGAAAGAAATGAGGTGG+GGG	0.570922	5_4:-65528830	None:intergenic
CGAGACAAAGGAACCTGTTG+AGG	0.574462	5_4:+65529935	Msa0864940:CDS
ATTTGACATTTACATAAACT+CGG	0.580684	5_4:+65530592	Msa0864940:three_prime_UTR
CAAACCTTTGGTTAAAGCTG+AGG	0.582591	5_4:+65529839	Msa0864940:CDS
AGTTGATGAAAGAAATGAGG+TGG	0.608604	5_4:-65528833	None:intergenic
AGCTTAGAGATGAGGTAACA+AGG	0.612100	5_4:-65528732	None:intergenic
AAATGGTGATTCTGTTGTTG+AGG	0.613322	5_4:+65530004	Msa0864940:CDS
GTGGCAAAAGCTTAGAGATG+AGG	0.617154	5_4:-65528740	None:intergenic
ACTACTAGTAGCTAAATGCA+TGG	0.617396	5_4:+65530415	Msa0864940:three_prime_UTR
CTACTAGTAGCTAAATGCAT+GGG	0.617641	5_4:+65530416	Msa0864940:three_prime_UTR
TGTTGTTAAGGATGAGAATG+TGG	0.621253	5_4:+65530067	Msa0864940:CDS
GTTGATGAAAGAAATGAGGT+GGG	0.621816	5_4:-65528832	None:intergenic
TGATAACTGAGCAGTGTCGT+CGG	0.622323	5_4:-65529721	None:intergenic
ACAAGTTGATGAAAGAAATG+AGG	0.623867	5_4:-65528836	None:intergenic
CAAAATGCATAATCATACAA+AGG	0.624630	5_4:-65530497	None:intergenic
AGCCACAGAAGAGAAAAGTG+AGG	0.638283	5_4:+65530130	Msa0864940:CDS
AGCATGTTTGGCAATAATGG+TGG	0.642031	5_4:-65528759	None:intergenic
CAACTGAGAAGAGTGAGTAA+GGG	0.654993	5_4:+65530249	Msa0864940:CDS
CGGTGATTCAGCTAATGTCG+AGG	0.660660	5_4:+65529971	Msa0864940:CDS
TTACTAGCATTCAGTGAATG+GGG	0.664936	5_4:+65528781	Msa0864940:five_prime_UTR
GGATGAGAATGTGGTAGCTG+AGG	0.670593	5_4:+65530076	Msa0864940:CDS
GGTGGTAGAAGAAGTTCTTG+TGG	0.675484	5_4:+65529869	Msa0864940:CDS
TAAAGCTGAGGCAAAAGAGG+TGG	0.676484	5_4:+65529851	Msa0864940:CDS
TTGATGAAAGAAATGAGGTG+GGG	0.683097	5_4:-65528831	None:intergenic
GGCTGTGAAAGATACAGCAG+AGG	0.684792	5_4:+65529890	Msa0864940:CDS
TGGTAGAGTTACCTCAACAG+TGG	0.712754	5_4:-65528980	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTATTAAATAATGCTTATTT+TGG	-	chr5_4:65528712-65528731	None:intergenic	10.0%
!!!	TTAATTTTGATGAAAAATAA+TGG	-	chr5_4:65528895-65528914	None:intergenic	10.0%
!!	ATGGAAATATTAATTATAAT+TGG	+	chr5_4:65529357-65529376	Msa0864940:intron	10.0%
!!!	TTATTAAATAATGCTTATTT+TGG	-	chr5_4:65528712-65528731	None:intergenic	10.0%
!!!	TTAATTTTGATGAAAAATAA+TGG	-	chr5_4:65528895-65528914	None:intergenic	10.0%
!!	ATGGAAATATTAATTATAAT+TGG	+	chr5_4:65529357-65529376	Msa0864940:intron	10.0%
!!!	AAAAATAATGGAATTTAGAA+TGG	-	chr5_4:65528883-65528902	None:intergenic	15.0%
!!!	AATCAATGTTTAAAATCAAA+TGG	-	chr5_4:65529052-65529071	None:intergenic	15.0%
!!!	AATTTTGAGTCTTTTATTTT+TGG	+	chr5_4:65529463-65529482	Msa0864940:intron	15.0%
!!!	AAAAATAATGGAATTTAGAA+TGG	-	chr5_4:65528883-65528902	None:intergenic	15.0%
!!!	AATCAATGTTTAAAATCAAA+TGG	-	chr5_4:65529052-65529071	None:intergenic	15.0%
!!!	AATTTTGAGTCTTTTATTTT+TGG	+	chr5_4:65529463-65529482	Msa0864940:intron	15.0%
!!!	ATTTAGAATGGTTTATATAG+AGG	-	chr5_4:65528871-65528890	None:intergenic	20.0%
!!!	TTTTCTTTGTATTCCAATTA+TGG	+	chr5_4:65528957-65528976	Msa0864940:exon	20.0%
!!!	AATATTTTAAAGCATCTAGT+AGG	+	chr5_4:65529086-65529105	Msa0864940:intron	20.0%
!!	AATCAAATTGTGATTCATAT+TGG	+	chr5_4:65529175-65529194	Msa0864940:intron	20.0%
!!	AAAAATTGAAGCTCTTAAAA+TGG	+	chr5_4:65529338-65529357	Msa0864940:intron	20.0%
!!	AGATAATTTATCCTTATGAA+CGG	-	chr5_4:65529501-65529520	None:intergenic	20.0%
!!!	TTTACTTTTTAATCGAACTT+TGG	-	chr5_4:65529532-65529551	None:intergenic	20.0%
!!!	GAACAAAATTTGTTTTAGAT+AGG	+	chr5_4:65529556-65529575	Msa0864940:intron	20.0%
!!	ATTTGACATTTACATAAACT+CGG	+	chr5_4:65530592-65530611	Msa0864940:three_prime_UTR	20.0%
!!!	ATTTAGAATGGTTTATATAG+AGG	-	chr5_4:65528871-65528890	None:intergenic	20.0%
!!!	TTTTCTTTGTATTCCAATTA+TGG	+	chr5_4:65528957-65528976	Msa0864940:exon	20.0%
!!!	AATATTTTAAAGCATCTAGT+AGG	+	chr5_4:65529086-65529105	Msa0864940:intron	20.0%
!!	AATCAAATTGTGATTCATAT+TGG	+	chr5_4:65529175-65529194	Msa0864940:intron	20.0%
!!	AAAAATTGAAGCTCTTAAAA+TGG	+	chr5_4:65529338-65529357	Msa0864940:intron	20.0%
!!	AGATAATTTATCCTTATGAA+CGG	-	chr5_4:65529501-65529520	None:intergenic	20.0%
!!!	TTTACTTTTTAATCGAACTT+TGG	-	chr5_4:65529532-65529551	None:intergenic	20.0%
!!!	GAACAAAATTTGTTTTAGAT+AGG	+	chr5_4:65529556-65529575	Msa0864940:intron	20.0%
!!	ATTTGACATTTACATAAACT+CGG	+	chr5_4:65530592-65530611	Msa0864940:three_prime_UTR	20.0%
!!!	TTATTTTGGATCACTCTATT+GGG	-	chr5_4:65528698-65528717	None:intergenic	25.0%
!	AACAAAGTTAAGATTGCTAT+AGG	-	chr5_4:65528928-65528947	None:intergenic	25.0%
!	AAAAACCAAGTACTTGAAAT+TGG	-	chr5_4:65529003-65529022	None:intergenic	25.0%
!!!	TCAATATTTTAATGTCTCTC+CGG	-	chr5_4:65529254-65529273	None:intergenic	25.0%
!!!	ACCTTTTTTAATGCATTAGA+TGG	+	chr5_4:65529276-65529295	Msa0864940:intron	25.0%
!	TCATATCTTCTTGAGTAAAT+AGG	-	chr5_4:65529311-65529330	None:intergenic	25.0%
!	TTTCAATACTCTGACTAATA+TGG	-	chr5_4:65529435-65529454	None:intergenic	25.0%
!	GATAATTTATCCTTATGAAC+GGG	-	chr5_4:65529500-65529519	None:intergenic	25.0%
!!	CAAATGTTGTTTATTAGACA+AGG	-	chr5_4:65529649-65529668	None:intergenic	25.0%
!	TACATTAGGTAAACTCAAAT+GGG	-	chr5_4:65530458-65530477	None:intergenic	25.0%
!	TTACATTAGGTAAACTCAAA+TGG	-	chr5_4:65530459-65530478	None:intergenic	25.0%
!	ATTACTGAAAAGGTTACATT+AGG	-	chr5_4:65530472-65530491	None:intergenic	25.0%
!	AAAGGAACATATTACTGAAA+AGG	-	chr5_4:65530482-65530501	None:intergenic	25.0%
!	CAAAATGCATAATCATACAA+AGG	-	chr5_4:65530500-65530519	None:intergenic	25.0%
!!	CTTTGTATGATTATGCATTT+TGG	+	chr5_4:65530498-65530517	Msa0864940:three_prime_UTR	25.0%
!	TGTAAATGTCAAATGACTAA+GGG	-	chr5_4:65530586-65530605	None:intergenic	25.0%
!	ATGTAAATGTCAAATGACTA+AGG	-	chr5_4:65530587-65530606	None:intergenic	25.0%
!!!	TTATTTTGGATCACTCTATT+GGG	-	chr5_4:65528698-65528717	None:intergenic	25.0%
!	AACAAAGTTAAGATTGCTAT+AGG	-	chr5_4:65528928-65528947	None:intergenic	25.0%
!	AAAAACCAAGTACTTGAAAT+TGG	-	chr5_4:65529003-65529022	None:intergenic	25.0%
!!!	TCAATATTTTAATGTCTCTC+CGG	-	chr5_4:65529254-65529273	None:intergenic	25.0%
!!!	ACCTTTTTTAATGCATTAGA+TGG	+	chr5_4:65529276-65529295	Msa0864940:intron	25.0%
!	TCATATCTTCTTGAGTAAAT+AGG	-	chr5_4:65529311-65529330	None:intergenic	25.0%
!	TTTCAATACTCTGACTAATA+TGG	-	chr5_4:65529435-65529454	None:intergenic	25.0%
!	GATAATTTATCCTTATGAAC+GGG	-	chr5_4:65529500-65529519	None:intergenic	25.0%
!!	CAAATGTTGTTTATTAGACA+AGG	-	chr5_4:65529649-65529668	None:intergenic	25.0%
!	TACATTAGGTAAACTCAAAT+GGG	-	chr5_4:65530458-65530477	None:intergenic	25.0%
!	TTACATTAGGTAAACTCAAA+TGG	-	chr5_4:65530459-65530478	None:intergenic	25.0%
!	ATTACTGAAAAGGTTACATT+AGG	-	chr5_4:65530472-65530491	None:intergenic	25.0%
!	AAAGGAACATATTACTGAAA+AGG	-	chr5_4:65530482-65530501	None:intergenic	25.0%
!	CAAAATGCATAATCATACAA+AGG	-	chr5_4:65530500-65530519	None:intergenic	25.0%
!!	CTTTGTATGATTATGCATTT+TGG	+	chr5_4:65530498-65530517	Msa0864940:three_prime_UTR	25.0%
!	TGTAAATGTCAAATGACTAA+GGG	-	chr5_4:65530586-65530605	None:intergenic	25.0%
!	ATGTAAATGTCAAATGACTA+AGG	-	chr5_4:65530587-65530606	None:intergenic	25.0%
	TCTATTGGGAGAATGAATTA+TGG	-	chr5_4:65528684-65528703	None:intergenic	30.0%
!!!	CTTATTTTGGATCACTCTAT+TGG	-	chr5_4:65528699-65528718	None:intergenic	30.0%
!!	ACAAGTTGATGAAAGAAATG+AGG	-	chr5_4:65528839-65528858	None:intergenic	30.0%
	TGGTTTATATAGAGGTTTGA+GGG	-	chr5_4:65528863-65528882	None:intergenic	30.0%
	ATGGTTTATATAGAGGTTTG+AGG	-	chr5_4:65528864-65528883	None:intergenic	30.0%
!!!	CACATGACATGTTTTAATCA+CGG	+	chr5_4:65529148-65529167	Msa0864940:intron	30.0%
!!!	ACATGACATGTTTTAATCAC+GGG	+	chr5_4:65529149-65529168	Msa0864940:intron	30.0%
	GCCATCTAATGCATTAAAAA+AGG	-	chr5_4:65529280-65529299	None:intergenic	30.0%
	ATCTTCTTGAGTAAATAGGA+AGG	-	chr5_4:65529307-65529326	None:intergenic	30.0%
	ATGTGCATGATTAATTCATG+TGG	-	chr5_4:65529401-65529420	None:intergenic	30.0%
!!	TTTTCTTTTGTTTCCTCAAC+AGG	-	chr5_4:65529951-65529970	None:intergenic	30.0%
	GTTGAGGAAACAAAAGAAAA+CGG	+	chr5_4:65529951-65529970	Msa0864940:CDS	30.0%
	TGAGACAGAAAATGTTGTTA+AGG	+	chr5_4:65530055-65530074	Msa0864940:CDS	30.0%
!	CTCAATTTTTGCATCATTGT+TGG	-	chr5_4:65530210-65530229	None:intergenic	30.0%
	AAGTGTTTAATTAGAGAGAG+TGG	+	chr5_4:65530293-65530312	Msa0864940:three_prime_UTR	30.0%
	TCTATTGGGAGAATGAATTA+TGG	-	chr5_4:65528684-65528703	None:intergenic	30.0%
!!!	CTTATTTTGGATCACTCTAT+TGG	-	chr5_4:65528699-65528718	None:intergenic	30.0%
!!	ACAAGTTGATGAAAGAAATG+AGG	-	chr5_4:65528839-65528858	None:intergenic	30.0%
	TGGTTTATATAGAGGTTTGA+GGG	-	chr5_4:65528863-65528882	None:intergenic	30.0%
	ATGGTTTATATAGAGGTTTG+AGG	-	chr5_4:65528864-65528883	None:intergenic	30.0%
!!!	CACATGACATGTTTTAATCA+CGG	+	chr5_4:65529148-65529167	Msa0864940:intron	30.0%
!!!	ACATGACATGTTTTAATCAC+GGG	+	chr5_4:65529149-65529168	Msa0864940:intron	30.0%
	GCCATCTAATGCATTAAAAA+AGG	-	chr5_4:65529280-65529299	None:intergenic	30.0%
	ATCTTCTTGAGTAAATAGGA+AGG	-	chr5_4:65529307-65529326	None:intergenic	30.0%
	ATGTGCATGATTAATTCATG+TGG	-	chr5_4:65529401-65529420	None:intergenic	30.0%
!!	TTTTCTTTTGTTTCCTCAAC+AGG	-	chr5_4:65529951-65529970	None:intergenic	30.0%
	GTTGAGGAAACAAAAGAAAA+CGG	+	chr5_4:65529951-65529970	Msa0864940:CDS	30.0%
	TGAGACAGAAAATGTTGTTA+AGG	+	chr5_4:65530055-65530074	Msa0864940:CDS	30.0%
!	CTCAATTTTTGCATCATTGT+TGG	-	chr5_4:65530210-65530229	None:intergenic	30.0%
	AAGTGTTTAATTAGAGAGAG+TGG	+	chr5_4:65530293-65530312	Msa0864940:three_prime_UTR	30.0%
	GTAAGCATGTTTGGCAATAA+TGG	-	chr5_4:65528765-65528784	None:intergenic	35.0%
	TGAATGCTAGTAAGCATGTT+TGG	-	chr5_4:65528774-65528793	None:intergenic	35.0%
	CTTACTAGCATTCAGTGAAT+GGG	+	chr5_4:65528780-65528799	Msa0864940:five_prime_UTR	35.0%
	TTACTAGCATTCAGTGAATG+GGG	+	chr5_4:65528781-65528800	Msa0864940:five_prime_UTR	35.0%
	TTGATGAAAGAAATGAGGTG+GGG	-	chr5_4:65528834-65528853	None:intergenic	35.0%
!	GTTGATGAAAGAAATGAGGT+GGG	-	chr5_4:65528835-65528854	None:intergenic	35.0%
!!	AGTTGATGAAAGAAATGAGG+TGG	-	chr5_4:65528836-65528855	None:intergenic	35.0%
!	CTCTACCAATTTCAAGTACT+TGG	+	chr5_4:65528995-65529014	Msa0864940:intron	35.0%
	CGTGATTAAAACATGTCATG+TGG	-	chr5_4:65529150-65529169	None:intergenic	35.0%
	ATTTATCCTTATGAACGGGA+GGG	-	chr5_4:65529496-65529515	None:intergenic	35.0%
	AATTTATCCTTATGAACGGG+AGG	-	chr5_4:65529497-65529516	None:intergenic	35.0%
	TGATCTGAATATGATTCTGC+AGG	+	chr5_4:65529674-65529693	Msa0864940:intron	35.0%
	TGGACTCTCAATGATTTCTT+CGG	-	chr5_4:65529769-65529788	None:intergenic	35.0%
	TTCAGCTGAAGATTCTTCTT+TGG	-	chr5_4:65529814-65529833	None:intergenic	35.0%
	GTCGAGGAAACAAAAGAAAA+TGG	+	chr5_4:65529987-65530006	Msa0864940:CDS	35.0%
	AAATGGTGATTCTGTTGTTG+AGG	+	chr5_4:65530004-65530023	Msa0864940:CDS	35.0%
	TGTTGTTAAGGATGAGAATG+TGG	+	chr5_4:65530067-65530086	Msa0864940:CDS	35.0%
!	TTCCTCTTTCTTTTCATCCA+AGG	-	chr5_4:65530177-65530196	None:intergenic	35.0%
	AATTGAGAAGAGTGAAGAAG+AGG	+	chr5_4:65530223-65530242	Msa0864940:CDS	35.0%
	ACTACTAGTAGCTAAATGCA+TGG	+	chr5_4:65530415-65530434	Msa0864940:three_prime_UTR	35.0%
	CTACTAGTAGCTAAATGCAT+GGG	+	chr5_4:65530416-65530435	Msa0864940:three_prime_UTR	35.0%
	GTAAGCATGTTTGGCAATAA+TGG	-	chr5_4:65528765-65528784	None:intergenic	35.0%
	TGAATGCTAGTAAGCATGTT+TGG	-	chr5_4:65528774-65528793	None:intergenic	35.0%
	CTTACTAGCATTCAGTGAAT+GGG	+	chr5_4:65528780-65528799	Msa0864940:five_prime_UTR	35.0%
	TTACTAGCATTCAGTGAATG+GGG	+	chr5_4:65528781-65528800	Msa0864940:five_prime_UTR	35.0%
	TTGATGAAAGAAATGAGGTG+GGG	-	chr5_4:65528834-65528853	None:intergenic	35.0%
!	GTTGATGAAAGAAATGAGGT+GGG	-	chr5_4:65528835-65528854	None:intergenic	35.0%
!!	AGTTGATGAAAGAAATGAGG+TGG	-	chr5_4:65528836-65528855	None:intergenic	35.0%
!	CTCTACCAATTTCAAGTACT+TGG	+	chr5_4:65528995-65529014	Msa0864940:intron	35.0%
	CGTGATTAAAACATGTCATG+TGG	-	chr5_4:65529150-65529169	None:intergenic	35.0%
	ATTTATCCTTATGAACGGGA+GGG	-	chr5_4:65529496-65529515	None:intergenic	35.0%
	AATTTATCCTTATGAACGGG+AGG	-	chr5_4:65529497-65529516	None:intergenic	35.0%
	TGATCTGAATATGATTCTGC+AGG	+	chr5_4:65529674-65529693	Msa0864940:intron	35.0%
	TGGACTCTCAATGATTTCTT+CGG	-	chr5_4:65529769-65529788	None:intergenic	35.0%
	TTCAGCTGAAGATTCTTCTT+TGG	-	chr5_4:65529814-65529833	None:intergenic	35.0%
	GTCGAGGAAACAAAAGAAAA+TGG	+	chr5_4:65529987-65530006	Msa0864940:CDS	35.0%
	AAATGGTGATTCTGTTGTTG+AGG	+	chr5_4:65530004-65530023	Msa0864940:CDS	35.0%
	TGTTGTTAAGGATGAGAATG+TGG	+	chr5_4:65530067-65530086	Msa0864940:CDS	35.0%
!	TTCCTCTTTCTTTTCATCCA+AGG	-	chr5_4:65530177-65530196	None:intergenic	35.0%
	AATTGAGAAGAGTGAAGAAG+AGG	+	chr5_4:65530223-65530242	Msa0864940:CDS	35.0%
	ACTACTAGTAGCTAAATGCA+TGG	+	chr5_4:65530415-65530434	Msa0864940:three_prime_UTR	35.0%
	CTACTAGTAGCTAAATGCAT+GGG	+	chr5_4:65530416-65530435	Msa0864940:three_prime_UTR	35.0%
	AGCTTAGAGATGAGGTAACA+AGG	-	chr5_4:65528735-65528754	None:intergenic	40.0%
	AGCATGTTTGGCAATAATGG+TGG	-	chr5_4:65528762-65528781	None:intergenic	40.0%
	GCTTACTAGCATTCAGTGAA+TGG	+	chr5_4:65528779-65528798	Msa0864940:five_prime_UTR	40.0%
	TGATGAAAGAAATGAGGTGG+GGG	-	chr5_4:65528833-65528852	None:intergenic	40.0%
	TGTCATGTGGAAGTAATGCA+GGG	-	chr5_4:65529137-65529156	None:intergenic	40.0%
	ATGTCATGTGGAAGTAATGC+AGG	-	chr5_4:65529138-65529157	None:intergenic	40.0%
	CTCTGACTAATATGGACACA+TGG	-	chr5_4:65529427-65529446	None:intergenic	40.0%
	ACTCTCAATGATTTCTTCGG+TGG	-	chr5_4:65529766-65529785	None:intergenic	40.0%
!	CTCAGCTTTAACCAAAGGTT+TGG	-	chr5_4:65529841-65529860	None:intergenic	40.0%
	CAAACCTTTGGTTAAAGCTG+AGG	+	chr5_4:65529839-65529858	Msa0864940:CDS	40.0%
!	TTTGCCTCAGCTTTAACCAA+AGG	-	chr5_4:65529846-65529865	None:intergenic	40.0%
	TACAGCAGAGGAAACAAAGA+AGG	+	chr5_4:65529902-65529921	Msa0864940:CDS	40.0%
	AGAAGAGAAAAGTGAGGAGA+AGG	+	chr5_4:65530136-65530155	Msa0864940:CDS	40.0%
	AGCCTTGGATGAAAAGAAAG+AGG	+	chr5_4:65530172-65530191	Msa0864940:CDS	40.0%
	CAACTGAGAAGAGTGAGTAA+GGG	+	chr5_4:65530249-65530268	Msa0864940:CDS	40.0%
	AGCTTAGAGATGAGGTAACA+AGG	-	chr5_4:65528735-65528754	None:intergenic	40.0%
	AGCATGTTTGGCAATAATGG+TGG	-	chr5_4:65528762-65528781	None:intergenic	40.0%
	GCTTACTAGCATTCAGTGAA+TGG	+	chr5_4:65528779-65528798	Msa0864940:five_prime_UTR	40.0%
	TGATGAAAGAAATGAGGTGG+GGG	-	chr5_4:65528833-65528852	None:intergenic	40.0%
	TGTCATGTGGAAGTAATGCA+GGG	-	chr5_4:65529137-65529156	None:intergenic	40.0%
	ATGTCATGTGGAAGTAATGC+AGG	-	chr5_4:65529138-65529157	None:intergenic	40.0%
	CTCTGACTAATATGGACACA+TGG	-	chr5_4:65529427-65529446	None:intergenic	40.0%
	ACTCTCAATGATTTCTTCGG+TGG	-	chr5_4:65529766-65529785	None:intergenic	40.0%
!	CTCAGCTTTAACCAAAGGTT+TGG	-	chr5_4:65529841-65529860	None:intergenic	40.0%
	CAAACCTTTGGTTAAAGCTG+AGG	+	chr5_4:65529839-65529858	Msa0864940:CDS	40.0%
!	TTTGCCTCAGCTTTAACCAA+AGG	-	chr5_4:65529846-65529865	None:intergenic	40.0%
	TACAGCAGAGGAAACAAAGA+AGG	+	chr5_4:65529902-65529921	Msa0864940:CDS	40.0%
	AGAAGAGAAAAGTGAGGAGA+AGG	+	chr5_4:65530136-65530155	Msa0864940:CDS	40.0%
	AGCCTTGGATGAAAAGAAAG+AGG	+	chr5_4:65530172-65530191	Msa0864940:CDS	40.0%
	CAACTGAGAAGAGTGAGTAA+GGG	+	chr5_4:65530249-65530268	Msa0864940:CDS	40.0%
	GTGGCAAAAGCTTAGAGATG+AGG	-	chr5_4:65528743-65528762	None:intergenic	45.0%
	TCCAATTATGGCCACTGTTG+AGG	+	chr5_4:65528969-65528988	Msa0864940:exon	45.0%
	ACCTCAACAGTGGCCATAAT+TGG	-	chr5_4:65528973-65528992	None:intergenic	45.0%
	TGGTAGAGTTACCTCAACAG+TGG	-	chr5_4:65528983-65529002	None:intergenic	45.0%
	AAATCGCGTCACGTTGTAAC+CGG	+	chr5_4:65529232-65529251	Msa0864940:intron	45.0%
	TGATAACTGAGCAGTGTCGT+CGG	-	chr5_4:65529724-65529743	None:intergenic	45.0%
!	TCTTTGGTTTCTGATGCTGC+TGG	-	chr5_4:65529798-65529817	None:intergenic	45.0%
	AGCTGAAGAAGCCAAACCTT+TGG	+	chr5_4:65529827-65529846	Msa0864940:CDS	45.0%
	GGTTAAAGCTGAGGCAAAAG+AGG	+	chr5_4:65529848-65529867	Msa0864940:CDS	45.0%
	TAAAGCTGAGGCAAAAGAGG+TGG	+	chr5_4:65529851-65529870	Msa0864940:CDS	45.0%
	GGTGGTAGAAGAAGTTCTTG+TGG	+	chr5_4:65529869-65529888	Msa0864940:CDS	45.0%
	GGAAGAACAAACCGAGACAA+AGG	+	chr5_4:65529923-65529942	Msa0864940:CDS	45.0%
	CTCAACAGGTTCCTTTGTCT+CGG	-	chr5_4:65529937-65529956	None:intergenic	45.0%
	TTCTGTTGTTGAGGCTGTTC+AGG	+	chr5_4:65530013-65530032	Msa0864940:CDS	45.0%
	AGCCACAGAAGAGAAAAGTG+AGG	+	chr5_4:65530130-65530149	Msa0864940:CDS	45.0%
!!	CTCCTCACTTTTCTCTTCTG+TGG	-	chr5_4:65530135-65530154	None:intergenic	45.0%
	GGTTGAGAAAGAAGAAGCCT+TGG	+	chr5_4:65530157-65530176	Msa0864940:CDS	45.0%
	CCTTACTCACTCTTCTCAGT+TGG	-	chr5_4:65530251-65530270	None:intergenic	45.0%
	CCAACTGAGAAGAGTGAGTA+AGG	+	chr5_4:65530248-65530267	Msa0864940:CDS	45.0%
	GTGGCAAAAGCTTAGAGATG+AGG	-	chr5_4:65528743-65528762	None:intergenic	45.0%
	TCCAATTATGGCCACTGTTG+AGG	+	chr5_4:65528969-65528988	Msa0864940:exon	45.0%
	ACCTCAACAGTGGCCATAAT+TGG	-	chr5_4:65528973-65528992	None:intergenic	45.0%
	TGGTAGAGTTACCTCAACAG+TGG	-	chr5_4:65528983-65529002	None:intergenic	45.0%
	AAATCGCGTCACGTTGTAAC+CGG	+	chr5_4:65529232-65529251	Msa0864940:intron	45.0%
	TGATAACTGAGCAGTGTCGT+CGG	-	chr5_4:65529724-65529743	None:intergenic	45.0%
!	TCTTTGGTTTCTGATGCTGC+TGG	-	chr5_4:65529798-65529817	None:intergenic	45.0%
	AGCTGAAGAAGCCAAACCTT+TGG	+	chr5_4:65529827-65529846	Msa0864940:CDS	45.0%
	GGTTAAAGCTGAGGCAAAAG+AGG	+	chr5_4:65529848-65529867	Msa0864940:CDS	45.0%
	TAAAGCTGAGGCAAAAGAGG+TGG	+	chr5_4:65529851-65529870	Msa0864940:CDS	45.0%
	GGTGGTAGAAGAAGTTCTTG+TGG	+	chr5_4:65529869-65529888	Msa0864940:CDS	45.0%
	GGAAGAACAAACCGAGACAA+AGG	+	chr5_4:65529923-65529942	Msa0864940:CDS	45.0%
	CTCAACAGGTTCCTTTGTCT+CGG	-	chr5_4:65529937-65529956	None:intergenic	45.0%
	TTCTGTTGTTGAGGCTGTTC+AGG	+	chr5_4:65530013-65530032	Msa0864940:CDS	45.0%
	AGCCACAGAAGAGAAAAGTG+AGG	+	chr5_4:65530130-65530149	Msa0864940:CDS	45.0%
!!	CTCCTCACTTTTCTCTTCTG+TGG	-	chr5_4:65530135-65530154	None:intergenic	45.0%
	GGTTGAGAAAGAAGAAGCCT+TGG	+	chr5_4:65530157-65530176	Msa0864940:CDS	45.0%
	CCTTACTCACTCTTCTCAGT+TGG	-	chr5_4:65530251-65530270	None:intergenic	45.0%
	CCAACTGAGAAGAGTGAGTA+AGG	+	chr5_4:65530248-65530267	Msa0864940:CDS	45.0%
	GGGGGCAGTTCAAGAATCTT+GGG	-	chr5_4:65528815-65528834	None:intergenic	50.0%
	TGGGGGCAGTTCAAGAATCT+TGG	-	chr5_4:65528816-65528835	None:intergenic	50.0%
	CTCAAACCCTCCCGTTCATA+AGG	+	chr5_4:65529487-65529506	Msa0864940:intron	50.0%
	TCTGATGCTGCTGGTGTGAT+TGG	-	chr5_4:65529789-65529808	None:intergenic	50.0%
	GGCTGTGAAAGATACAGCAG+AGG	+	chr5_4:65529890-65529909	Msa0864940:CDS	50.0%
	CGAGACAAAGGAACCTGTTG+AGG	+	chr5_4:65529935-65529954	Msa0864940:CDS	50.0%
	CGGTGATTCAGCTAATGTCG+AGG	+	chr5_4:65529971-65529990	Msa0864940:CDS	50.0%
	TCTGTCTCAGATTCTGCAGC+TGG	-	chr5_4:65530044-65530063	None:intergenic	50.0%
	GGATGAGAATGTGGTAGCTG+AGG	+	chr5_4:65530076-65530095	Msa0864940:CDS	50.0%
	GGTAGCTGAGGCTGAAACTA+AGG	+	chr5_4:65530088-65530107	Msa0864940:CDS	50.0%
	GGGGGCAGTTCAAGAATCTT+GGG	-	chr5_4:65528815-65528834	None:intergenic	50.0%
	TGGGGGCAGTTCAAGAATCT+TGG	-	chr5_4:65528816-65528835	None:intergenic	50.0%
	CTCAAACCCTCCCGTTCATA+AGG	+	chr5_4:65529487-65529506	Msa0864940:intron	50.0%
	TCTGATGCTGCTGGTGTGAT+TGG	-	chr5_4:65529789-65529808	None:intergenic	50.0%
	GGCTGTGAAAGATACAGCAG+AGG	+	chr5_4:65529890-65529909	Msa0864940:CDS	50.0%
	CGAGACAAAGGAACCTGTTG+AGG	+	chr5_4:65529935-65529954	Msa0864940:CDS	50.0%
	CGGTGATTCAGCTAATGTCG+AGG	+	chr5_4:65529971-65529990	Msa0864940:CDS	50.0%
	TCTGTCTCAGATTCTGCAGC+TGG	-	chr5_4:65530044-65530063	None:intergenic	50.0%
	GGATGAGAATGTGGTAGCTG+AGG	+	chr5_4:65530076-65530095	Msa0864940:CDS	50.0%
	GGTAGCTGAGGCTGAAACTA+AGG	+	chr5_4:65530088-65530107	Msa0864940:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	65528668	65530621	65528668	ID=Msa0864940;Name=Msa0864940
chr5_4	mRNA	65528668	65530621	65528668	ID=Msa0864940-mRNA-1;Parent=Msa0864940;Name=Msa0864940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=308\|1\|1\|1\|1\|1\|2\|353\|195
chr5_4	exon	65528668	65528990	65528668	ID=Msa0864940-mRNA-1:exon:20659;Parent=Msa0864940-mRNA-1
chr5_4	exon	65529696	65530621	65529696	ID=Msa0864940-mRNA-1:exon:20660;Parent=Msa0864940-mRNA-1
chr5_4	five_prime_UTR	65528668	65528975	65528668	ID=Msa0864940-mRNA-1:five_prime_utr;Parent=Msa0864940-mRNA-1
chr5_4	CDS	65528976	65528990	65528976	ID=Msa0864940-mRNA-1:cds;Parent=Msa0864940-mRNA-1
chr5_4	CDS	65529696	65530268	65529696	ID=Msa0864940-mRNA-1:cds;Parent=Msa0864940-mRNA-1
chr5_4	three_prime_UTR	65530269	65530621	65530269	ID=Msa0864940-mRNA-1:three_prime_utr;Parent=Msa0864940-mRNA-1

Gene Sequence

>Msa0864940

ATGGCCACTGTTGAGGTTGTATCAGCACAGACTGCACTCTCCGACGACACTGCTCAGTTATCATTGAAATCTGATGAAAAAACCACCGAAGAAATCATTGAGAGTCCAATCACACCAGCAGCATCAGAAACCAAAGAAGAATCTTCAGCTGAAGAAGCCAAACCTTTGGTTAAAGCTGAGGCAAAAGAGGTGGTAGAAGAAGTTCTTGTGGCTGTGAAAGATACAGCAGAGGAAACAAAGAAGGAAGAACAAACCGAGACAAAGGAACCTGTTGAGGAAACAAAAGAAAACGGTGATTCAGCTAATGTCGAGGAAACAAAAGAAAATGGTGATTCTGTTGTTGAGGCTGTTCAGGAAAAACCAGCTGCAGAATCTGAGACAGAAAATGTTGTTAAGGATGAGAATGTGGTAGCTGAGGCTGAAACTAAGGACAATGTTAAGACAGAAGAAGCCACAGAAGAGAAAAGTGAGGAGAAGGTTGAGAAAGAAGAAGCCTTGGATGAAAAGAAAGAGGAAGAAGTGATCACCAACAATGATGCAAAAATTGAGAAGAGTGAAGAAGAGGCTCCAACTGAGAAGAGTGAGTAA

Protein sequence

>Msa0864940

MATVEVVSAQTALSDDTAQLSLKSDEKTTEEIIESPITPAASETKEESSAEEAKPLVKAEAKEVVEEVLVAVKDTAEETKKEEQTETKEPVEETKENGDSANVEETKENGDSVVEAVQEKPAAESETENVVKDENVVAEAETKDNVKTEEATEEKSEEKVEKEEALDEKKEEEVITNNDAKIEKSEEEAPTEKSE*