AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0073120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073120 MtrunA17_Chr1g0180381 98.101 474 9 0 1 474 1 474 0.0 973
Msa0073120 MtrunA17_Chr7g0264891 74.526 475 110 5 1 472 1 467 0.0 695
Msa0073120 MtrunA17_Chr1g0210321 69.065 417 125 1 1 417 1 413 0.0 623
Msa0073120 MtrunA17_Chr6g0458201 60.337 416 149 2 2 417 3 402 0.0 523
Msa0073120 MtrunA17_Chr4g0058051 62.141 383 137 2 34 415 28 403 2.81e-176 500
Msa0073120 MtrunA17_Chr1g0169731 59.948 382 146 1 34 415 72 446 4.89e-172 491
Msa0073120 MtrunA17_Chr3g0116521 59.459 407 153 2 9 415 8 402 7.34e-170 484
Msa0073120 MtrunA17_Chr7g0237761 59.686 382 147 1 34 415 66 440 7.45e-169 483
Msa0073120 MtrunA17_Chr3g0123321 60.471 382 141 3 34 415 28 399 6.33e-159 456
Msa0073120 MtrunA17_Chr3g0123331 54.258 411 172 4 2 411 3 398 1.24e-151 437
Msa0073120 MtrunA17_Chr4g0060211 51.958 383 174 4 33 411 50 426 1.84e-144 420
Msa0073120 MtrunA17_Chr5g0416061 55.241 353 149 2 33 380 61 409 3.66e-143 417
Msa0073120 MtrunA17_Chr6g0452861 52.850 386 174 3 33 411 61 445 6.25e-143 417
Msa0073120 MtrunA17_Chr8g0362561 54.520 354 153 2 66 411 94 447 8.68e-143 417
Msa0073120 MtrunA17_Chr5g0416041 52.493 381 179 2 33 411 61 441 6.17e-138 404
Msa0073120 MtrunA17_Chr7g0216581 50.254 394 181 3 33 411 50 443 2.20e-135 398
Msa0073120 MtrunA17_Chr4g0075231 55.848 342 147 3 71 411 39 377 4.90e-135 394
Msa0073120 MtrunA17_Chr2g0288921 54.121 364 157 4 57 416 49 406 7.95e-134 392
Msa0073120 MtrunA17_Chr8g0373761 42.975 363 197 7 59 415 30 388 8.71e-90 279
Msa0073120 MtrunA17_Chr8g0373721 41.689 367 196 8 59 415 30 388 1.87e-85 268
Msa0073120 MtrunA17_Chr3g0089181 41.645 377 201 10 45 415 6 369 1.81e-84 265
Msa0073120 MtrunA17_Chr8g0373701 39.782 367 206 7 54 415 87 443 1.34e-79 254
Msa0073120 MtrunA17_Chr8g0373731 41.598 363 202 7 59 415 30 388 5.36e-78 248
Msa0073120 MtrunA17_Chr5g0403481 42.090 354 189 10 71 415 41 387 4.11e-75 241
Msa0073120 MtrunA17_Chr5g0403461 42.090 354 189 10 71 415 41 387 4.11e-75 241
Msa0073120 MtrunA17_Chr5g0403491 42.090 354 189 10 71 415 41 387 4.11e-75 241
Msa0073120 MtrunA17_Chr5g0403391 42.416 356 185 10 71 415 41 387 4.19e-75 241
Msa0073120 MtrunA17_Chr5g0414541 41.457 357 187 10 71 415 41 387 1.16e-74 239
Msa0073120 MtrunA17_Chr4g0031851 43.042 309 170 5 110 415 28 333 3.98e-73 235
Msa0073120 MtrunA17_Chr5g0403411 40.741 351 198 8 71 415 41 387 4.64e-72 233
Msa0073120 MtrunA17_Chr1g0183941 42.963 270 146 4 146 411 1 266 6.43e-64 207
Msa0073120 MtrunA17_Chr3g0113551 64.662 133 47 0 213 345 158 290 9.13e-58 193
Msa0073120 MtrunA17_Chr6g0481851 37.818 275 113 6 104 376 6 224 3.40e-45 158
Msa0073120 MtrunA17_Chr1g0212931 36.735 294 160 6 82 374 7 275 1.79e-41 150
Msa0073120 MtrunA17_Chr2g0288901 48.322 149 72 3 265 412 5 149 1.35e-40 142
Msa0073120 MtrunA17_Chr2g0288911 57.377 122 51 1 146 266 1 122 1.39e-40 142
Msa0073120 MtrunA17_Chr1g0182021 37.389 337 171 10 90 415 64 371 1.64e-39 146
Msa0073120 MtrunA17_Chr1g0183951 35.000 100 52 3 43 130 4 102 3.46e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073120 AT3G53190.1 69.474 475 133 6 1 468 2 471 0.0 645
Msa0073120 AT5G04310.1 62.780 446 152 3 6 437 18 463 0.0 560
Msa0073120 AT5G04310.2 62.780 446 152 3 6 437 18 463 0.0 560
Msa0073120 AT5G04310.3 64.692 422 137 2 6 415 18 439 0.0 555
Msa0073120 AT3G54920.1 65.271 406 124 4 20 417 22 418 0.0 544
Msa0073120 AT4G13710.1 62.565 382 140 1 34 415 88 466 1.97e-180 513
Msa0073120 AT4G13710.2 62.565 382 140 1 34 415 69 447 3.38e-180 512
Msa0073120 AT5G63180.1 59.169 409 152 4 9 415 33 428 3.38e-176 501
Msa0073120 AT1G67750.1 62.169 378 134 2 34 411 32 400 5.29e-172 489
Msa0073120 AT1G04680.1 56.429 420 170 3 8 415 7 425 6.02e-172 490
Msa0073120 AT3G07010.1 60.053 378 144 1 34 411 38 408 3.02e-169 483
Msa0073120 AT3G24670.1 61.111 378 140 1 34 411 62 432 2.21e-168 482
Msa0073120 AT3G07010.2 63.584 346 126 0 66 411 30 375 4.87e-168 479
Msa0073120 AT4G24780.2 60.000 390 150 1 26 415 21 404 7.18e-167 476
Msa0073120 AT4G24780.1 60.000 390 150 1 26 415 21 404 7.18e-167 476
Msa0073120 AT3G24230.1 58.639 382 154 2 34 415 70 447 1.40e-166 478
Msa0073120 AT4G13210.1 60.847 378 142 1 34 411 22 393 2.27e-164 470
Msa0073120 AT4G13210.2 60.847 378 142 1 34 411 59 430 3.14e-164 471
Msa0073120 AT5G48900.1 57.767 412 164 3 3 411 5 409 5.77e-161 462
Msa0073120 AT3G27400.2 53.676 408 181 2 8 415 13 412 7.19e-158 454
Msa0073120 AT3G27400.1 53.676 408 181 2 8 415 9 408 8.22e-158 454
Msa0073120 AT1G14420.1 50.474 422 190 4 10 412 31 452 1.47e-152 442
Msa0073120 AT3G01270.1 55.398 352 155 2 62 411 116 467 2.84e-143 419
Msa0073120 AT5G55720.1 50.856 409 179 6 10 416 1 389 2.35e-142 414
Msa0073120 AT5G15110.1 53.602 347 159 2 67 411 118 464 4.91e-141 413
Msa0073120 AT2G02720.1 48.537 410 193 3 21 412 39 448 1.74e-140 411
Msa0073120 AT1G11920.1 60.645 310 120 2 71 380 37 344 1.70e-137 401
Msa0073120 AT4G22090.1 54.000 350 151 4 71 416 47 390 2.07e-130 383
Msa0073120 AT4G22080.1 53.714 350 152 4 71 416 47 390 5.87e-130 382
Msa0073120 AT1G30350.1 50.000 344 156 3 68 411 33 360 1.76e-117 349
Msa0073120 AT5G09280.1 47.059 238 124 2 104 340 6 242 1.22e-68 221
Msa0073120 AT3G55140.1 36.713 286 155 6 90 374 16 276 1.80e-40 148
Msa0073120 AT3G09540.1 36.552 290 154 8 88 374 61 323 5.39e-38 142
Msa0073120 AT3G09540.3 36.207 290 151 9 88 374 61 319 1.34e-36 139
Msa0073120 AT3G55140.2 32.566 304 178 7 125 421 22 305 1.42e-34 132
Msa0073120 AT3G09540.2 37.131 237 123 5 88 323 61 272 6.51e-33 126

Find 120 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATAGCATTCAACCATTT+TGG 0.176765 1_2:+46570399 Msa0073120:CDS
TGACGATTGTTGGCCCAATC+TGG 0.246902 1_2:-46568259 None:intergenic
ACTTCTAAGGCAACAGATTC+AGG 0.249046 1_2:-46567596 None:intergenic
AACATAAGAGTCCAACAAAA+AGG 0.254751 1_2:-46572103 None:intergenic
ACTATGGCTGCTGGTGTTCT+TGG 0.258365 1_2:+46570978 Msa0073120:CDS
TATCTTAAAGTACCAGGTTT+TGG 0.259866 1_2:-46568385 None:intergenic
TTATACAAAATGAACCTCTT+TGG 0.281367 1_2:+46568413 Msa0073120:CDS
TGATGTTCCATGGTTGAAAA+AGG 0.293620 1_2:-46567537 None:intergenic
GAACTAATTGTTGACCAAAA+TGG 0.305223 1_2:-46570413 None:intergenic
AGGTTAGCAGATTGTGCTAT+AGG 0.311555 1_2:+46568283 Msa0073120:CDS
AATAGCTACAAAACCATTGA+TGG 0.315393 1_2:+46568487 Msa0073120:CDS
CATTTCCAACAATCGTCTAT+TGG 0.318679 1_2:-46568232 None:intergenic
GTTCTAAATCCATAGTGTTC+TGG 0.323445 1_2:-46570168 None:intergenic
TTAACATTGCCCTTATCTTA+AGG 0.324089 1_2:-46572246 None:intergenic
GAAATCCGATCAGCTGCTTT+AGG 0.332810 1_2:-46570948 None:intergenic
ATTTCCAACAATCGTCTATT+GGG 0.332927 1_2:-46568231 None:intergenic
TTAGGAAAATGCAGGTTGTT+TGG 0.336248 1_2:-46567499 None:intergenic
GCGAATGGACTTCGTGGAAT+TGG 0.339342 1_2:+46570832 Msa0073120:CDS
GCTGTTAAAGATCTATGGTT+AGG 0.343185 1_2:-46572133 None:intergenic
GCAGATTGTGCTATAGGGTT+TGG 0.343920 1_2:+46568289 Msa0073120:CDS
TGCTAACCTTTGACGATTGT+TGG 0.344322 1_2:-46568269 None:intergenic
ATGCTTAACCTCACTCTTCC+TGG 0.345866 1_2:+46567560 Msa0073120:CDS
GATTATAGTATGTCATATTC+TGG 0.346483 1_2:+46572017 Msa0073120:CDS
GTTACTTGCATTCCTGAGTC+TGG 0.346633 1_2:-46570378 None:intergenic
TGTGTACCTGTGAACTTCTA+AGG 0.361301 1_2:-46567609 None:intergenic
CGGTTTAATAGACGTCGTTA+TGG 0.370008 1_2:+46570272 Msa0073120:CDS
GGAGATGGAATCTCAATATT+CGG 0.372629 1_2:+46570201 Msa0073120:CDS
TTAAGATAAGGGCAATGTTA+AGG 0.380603 1_2:+46572248 Msa0073120:three_prime_UTR
GGTTAGCAGATTGTGCTATA+GGG 0.381880 1_2:+46568284 Msa0073120:CDS
GGTTTAATAGACGTCGTTAT+GGG 0.389398 1_2:+46570273 Msa0073120:CDS
GTGACGAAGAGGTTGGATTC+TGG 0.389452 1_2:+46570804 Msa0073120:CDS
TCGGATTTCTAGTCTTACTA+TGG 0.404134 1_2:+46570962 Msa0073120:CDS
GGAATGGAAGGGTAAGTAGT+AGG 0.411886 1_2:-46567387 None:intergenic
GATGCAAGGTAACCGGTATA+CGG 0.413903 1_2:+46570755 Msa0073120:intron
AACTTAATCATCATGTTACT+TGG 0.416311 1_2:-46568445 None:intergenic
AGGAGCAAAGTAGTGAGATT+AGG 0.428527 1_2:-46567517 None:intergenic
GGTGCTGATGTTCATATTGT+TGG 0.431570 1_2:+46568514 Msa0073120:CDS
TTTGTTGATTCAGGTGATAA+GGG 0.433331 1_2:+46570891 Msa0073120:CDS
CTGTTAAAGATCTATGGTTA+GGG 0.438693 1_2:-46572132 None:intergenic
TCTAGTCTTACTATGGCTGC+TGG 0.442031 1_2:+46570969 Msa0073120:CDS
GACGATTGTTGGCCCAATCT+GGG 0.446148 1_2:-46568258 None:intergenic
TATTCGGGTCAAAAGACATA+TGG 0.449746 1_2:+46570217 Msa0073120:CDS
GAGATGGAATCTCAATATTC+GGG 0.450110 1_2:+46570202 Msa0073120:CDS
TTGGAAATGCGACCCAGATT+GGG 0.450125 1_2:+46568246 Msa0073120:CDS
GAAATCTGAAGGCGATGTTA+TGG 0.455811 1_2:+46570854 Msa0073120:CDS
CACAACGAGGTTATGTTACT+AGG 0.455977 1_2:+46570336 Msa0073120:CDS
AAGGCAACAGATTCAGGGTC+TGG 0.459566 1_2:-46567590 None:intergenic
GTTTGGAACATTGTTGATGA+AGG 0.460039 1_2:-46567482 None:intergenic
TGTATGCTATTGGTGGAAGC+GGG 0.461262 1_2:+46570502 Msa0073120:CDS
GTTGGAAATGCGACCCAGAT+TGG 0.464792 1_2:+46568245 Msa0073120:CDS
TATCTCTGATGCAAGGTAAC+CGG 0.469363 1_2:+46570748 Msa0073120:intron
CTGGTGTTCTTGGTGTTGCT+AGG 0.475057 1_2:+46570988 Msa0073120:CDS
GAAACCCAATAGACGATTGT+TGG 0.475977 1_2:+46568227 Msa0073120:CDS
CTATAATCACCACCACCGTT+TGG 0.485490 1_2:-46572002 None:intergenic
CAAAATGCCAAAGGAGGAAA+AGG 0.490161 1_2:+46568313 Msa0073120:CDS
ATGAGCAGGGACAATAATCT+AGG 0.491954 1_2:+46571963 Msa0073120:intron
TGGGAGATGTATGCTATTGG+TGG 0.495777 1_2:+46570495 Msa0073120:CDS
CTGACTGCTCCTTAAGATAA+GGG 0.495942 1_2:+46572237 Msa0073120:three_prime_UTR
AGAATGCCACGTTGCAGACT+CGG 0.496617 1_2:+46570438 Msa0073120:CDS
CCTCGTTGTGGTGTGAGAAA+TGG 0.498821 1_2:-46570323 None:intergenic
CATCCTCAGGAGCCGTATAC+CGG 0.501557 1_2:-46570767 None:intergenic
TAGTGAGATTAGGAAAATGC+AGG 0.503825 1_2:-46567507 None:intergenic
TGCTTCGCGTCAACATCCTC+AGG 0.504471 1_2:-46570780 None:intergenic
ACTGACTGCTCCTTAAGATA+AGG 0.505558 1_2:+46572236 Msa0073120:three_prime_UTR
CGTTCGAGTCCAGAACACTA+TGG 0.523323 1_2:+46570159 Msa0073120:CDS
ATCAGCACCACGACCATCAA+TGG 0.524009 1_2:-46568500 None:intergenic
CTCACTCTCCACTAGTGGAA+TGG 0.531516 1_2:-46567403 None:intergenic
TGGATTCTGGTGACAGCGAA+TGG 0.532614 1_2:+46570817 Msa0073120:CDS
GTTCATCATTGTCATCCCTC+AGG 0.533136 1_2:+46568592 Msa0073120:CDS
ATGTATGCTATTGGTGGAAG+CGG 0.534035 1_2:+46570501 Msa0073120:CDS
CTTCTAAGGCAACAGATTCA+GGG 0.534724 1_2:-46567595 None:intergenic
GATGTTCATATTGTTGGTGG+TGG 0.536484 1_2:+46568520 Msa0073120:CDS
CTGTTGCCTTAGAAGTTCAC+AGG 0.539920 1_2:+46567603 Msa0073120:CDS
CTCTCCACTAGTGGAATGGA+AGG 0.541289 1_2:-46567399 None:intergenic
GTGACAGCGAATGGACTTCG+TGG 0.543746 1_2:+46570826 Msa0073120:CDS
TTACCCTTCCATTCCACTAG+TGG 0.546463 1_2:+46567395 Msa0073120:five_prime_UTR
GCTGATGTTCATATTGTTGG+TGG 0.547478 1_2:+46568517 Msa0073120:CDS
ACACTTTCACGTTGCAAAGA+CGG 0.547758 1_2:+46570252 Msa0073120:CDS
AGATGGGAGATGTATGCTAT+TGG 0.550330 1_2:+46570492 Msa0073120:CDS
GTGGTGTGAGAAATGGTTGT+TGG 0.550890 1_2:-46570316 None:intergenic
TTTGGAACATTGTTGATGAA+GGG 0.562353 1_2:-46567481 None:intergenic
GGTTAAGCATTGATGTTCCA+TGG 0.562902 1_2:-46567547 None:intergenic
GATTCAGGTGATAAGGGTGA+AGG 0.563107 1_2:+46570897 Msa0073120:CDS
TCAGGGTCTGGATGTTGACC+AGG 0.567446 1_2:-46567578 None:intergenic
TACAAAACCATTGATGGTCG+TGG 0.571754 1_2:+46568493 Msa0073120:CDS
GAAGCAAGTGACGAAGAGGT+TGG 0.573237 1_2:+46570797 Msa0073120:CDS
CACTTTGGAGAAAGCAGTCA+TGG 0.576400 1_2:+46567357 None:intergenic
CTTGGAAACACAATCCAAAG+AGG 0.579986 1_2:-46568427 None:intergenic
ACTGCATATCTTAAAGTACC+AGG 0.583146 1_2:-46568391 None:intergenic
AGAACAGAATCAGACGGAGA+TGG 0.583522 1_2:+46570186 Msa0073120:CDS
GAAGGCGATGTTATGGCGAA+TGG 0.585472 1_2:+46570861 Msa0073120:CDS
ACTCACTCACTCTCCACTAG+TGG 0.593601 1_2:-46567408 None:intergenic
TCGTGGAATTGGAAATCTGA+AGG 0.599482 1_2:+46570843 Msa0073120:CDS
GACCACTACAAACCAGACTC+AGG 0.600307 1_2:+46570366 Msa0073120:CDS
TTCCTGAGTCTGGTTTGTAG+TGG 0.607885 1_2:-46570368 None:intergenic
TTGATCCTAAAGCAGCTGAT+CGG 0.611717 1_2:+46570943 Msa0073120:CDS
ACGCGAAGCAAGTGACGAAG+AGG 0.613864 1_2:+46570793 Msa0073120:CDS
GTATGCTATTGGTGGAAGCG+GGG 0.614417 1_2:+46570503 Msa0073120:CDS
TATGCTATTGGTGGAAGCGG+GGG 0.619508 1_2:+46570504 Msa0073120:CDS
GGATTTAGAACAGAATCAGA+CGG 0.624177 1_2:+46570180 Msa0073120:CDS
AATGCCAAAGGAGGAAAAGG+TGG 0.625369 1_2:+46568316 Msa0073120:CDS
ACAAGAGCACCAAACGGTGG+TGG 0.630315 1_2:+46571993 Msa0073120:CDS
GGGACAATAATCTAGGAATG+TGG 0.631048 1_2:+46571970 Msa0073120:intron
ATTGGGCCAACAATCGTCAA+AGG 0.631186 1_2:+46568263 Msa0073120:CDS
ATTGACAGCATCATTGTCTG+AGG 0.633209 1_2:-46568362 None:intergenic
GATGCTGTCAATCCAAAACC+TGG 0.634213 1_2:+46568373 Msa0073120:CDS
ATGTGGACAAGAGCACCAAA+CGG 0.637472 1_2:+46571987 Msa0073120:CDS
TAACCGGTATACGGCTCCTG+AGG 0.641263 1_2:+46570764 Msa0073120:CDS
TAAAATCGTTGTTCACCACA+TGG 0.641341 1_2:-46570467 None:intergenic
GGGTTTGGACAAAATGCCAA+AGG 0.641402 1_2:+46568304 Msa0073120:CDS
TTTGGACAAAATGCCAAAGG+AGG 0.659473 1_2:+46568307 Msa0073120:CDS
GATGTTGACCAGGAAGAGTG+AGG 0.666585 1_2:-46567568 None:intergenic
CTGGTTTGTAGTGGTCACTG+TGG 0.694709 1_2:-46570359 None:intergenic
TGCAACGTGAAAGTGTGCAA+TGG 0.695074 1_2:-46570245 None:intergenic
TCTCCACTAGTGGAATGGAA+GGG 0.696607 1_2:-46567398 None:intergenic
CTAGTAACATAACCTCGTTG+TGG 0.712766 1_2:-46570335 None:intergenic
CCATTTCTCACACCACAACG+AGG 0.725043 1_2:+46570323 Msa0073120:CDS
TGGACAAGAGCACCAAACGG+TGG 0.739078 1_2:+46571990 Msa0073120:CDS
ATGTATCCGAGTCTGCAACG+TGG 0.774667 1_2:-46570444 None:intergenic
CAGACTCGGATACATCCATG+TGG 0.786116 1_2:+46570452 Msa0073120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAATTAATTAACTTTTTTT+AGG - chr1_2:46568924-46568943 None:intergenic 10.0%
!! TAAAAAAAGTTAATTAATTG+TGG + chr1_2:46568923-46568942 Msa0073120:intron 10.0%
!! AAAAAAAGTTAATTAATTGT+GGG + chr1_2:46568924-46568943 Msa0073120:intron 10.0%
!! AATTCCAAATAATAAATATT+TGG + chr1_2:46569633-46569652 Msa0073120:intron 10.0%
!!! TAAATGATGTATAATTTTAT+AGG - chr1_2:46569664-46569683 None:intergenic 10.0%
!!! TAATTTTTAAAATGTCAATT+AGG + chr1_2:46571245-46571264 Msa0073120:intron 10.0%
!!! TTTTCAGAAAAAATATTTAT+TGG - chr1_2:46571758-46571777 None:intergenic 10.0%
!!! TTATTTTTTGTTTTAGATTT+TGG + chr1_2:46571788-46571807 Msa0073120:intron 10.0%
!!! TTTAAATACAGAATAAATTT+TGG - chr1_2:46571844-46571863 None:intergenic 10.0%
!! CTTAATGATTATAAAGATAT+GGG - chr1_2:46567770-46567789 None:intergenic 15.0%
!! TCTTAATGATTATAAAGATA+TGG - chr1_2:46567771-46567790 None:intergenic 15.0%
!! TTAAAACAAGTTATGTAAAA+GGG + chr1_2:46567802-46567821 Msa0073120:intron 15.0%
!!! AGTCATAACAATTTTTTTTT+TGG + chr1_2:46567928-46567947 Msa0073120:intron 15.0%
!!! GTCATAACAATTTTTTTTTT+GGG + chr1_2:46567929-46567948 Msa0073120:intron 15.0%
!!! ACAATGTCATTTTATTTTTT+TGG + chr1_2:46567958-46567977 Msa0073120:intron 15.0%
!!! CAATGTCATTTTATTTTTTT+GGG + chr1_2:46567959-46567978 Msa0073120:intron 15.0%
!!! CATATAAAGATTTCATTTTT+TGG + chr1_2:46568011-46568030 Msa0073120:intron 15.0%
!!! AAATAATTTTTTTTACCTGA+GGG - chr1_2:46568610-46568629 None:intergenic 15.0%
!!! TAAATAATTTTTTTTACCTG+AGG - chr1_2:46568611-46568630 None:intergenic 15.0%
!! AAAATTATTTAGTATACGAT+TGG + chr1_2:46568620-46568639 Msa0073120:intron 15.0%
!! TTATTATACATCAATTAAGT+AGG + chr1_2:46568789-46568808 Msa0073120:intron 15.0%
!! ATTAAAATCACATACTTATA+TGG - chr1_2:46569075-46569094 None:intergenic 15.0%
!!! TTTGTTGACTAAAATATAAA+AGG + chr1_2:46569425-46569444 Msa0073120:intron 15.0%
!!! TTGTTGACTAAAATATAAAA+GGG + chr1_2:46569426-46569445 Msa0073120:intron 15.0%
!!! AACTTGTTTTAAGTAATGTA+GGG - chr1_2:46567794-46567813 None:intergenic 20.0%
!!! TAACTTGTTTTAAGTAATGT+AGG - chr1_2:46567795-46567814 None:intergenic 20.0%
!! CTTAAAACAAGTTATGTAAA+AGG + chr1_2:46567801-46567820 Msa0073120:intron 20.0%
!!! TAAGAAGTTTCATTCTTTTT+TGG + chr1_2:46567986-46568005 Msa0073120:intron 20.0%
!!! ATAAAGATTTCATTTTTTGG+AGG + chr1_2:46568014-46568033 Msa0073120:intron 20.0%
!!! TAAAGATTTCATTTTTTGGA+GGG + chr1_2:46568015-46568034 Msa0073120:intron 20.0%
!!! GTGTAACTTTTAAAAAACTA+CGG + chr1_2:46568700-46568719 Msa0073120:intron 20.0%
!! AACATACTACAAATTAGAAT+AGG - chr1_2:46569010-46569029 None:intergenic 20.0%
!!! AGTCAAATTTGCTTATATTT+AGG - chr1_2:46569147-46569166 None:intergenic 20.0%
!!! AAATGAAATACTCACTTTTT+AGG - chr1_2:46569240-46569259 None:intergenic 20.0%
!! GTGTCCAAATATTTATTATT+TGG - chr1_2:46569640-46569659 None:intergenic 20.0%
!! AAGAAAATATTAACTTTGGA+TGG - chr1_2:46570064-46570083 None:intergenic 20.0%
!! CACAAAGAAAATATTAACTT+TGG - chr1_2:46570068-46570087 None:intergenic 20.0%
!! AAGTTAGTTAATAGTTAGTT+AGG - chr1_2:46570728-46570747 None:intergenic 20.0%
!! ATTCAATCAACTAGTAATAA+AGG - chr1_2:46571055-46571074 None:intergenic 20.0%
!!! AAATAAGTTTTGAATTGCAT+TGG - chr1_2:46571418-46571437 None:intergenic 20.0%
!! ACAAAAGTAACAAAAGTAAA+AGG - chr1_2:46571657-46571676 None:intergenic 20.0%
!!! TTTAGCATCTTCAATTTTAT+TGG + chr1_2:46572166-46572185 Msa0073120:three_prime_UTR 20.0%
! AATGATTATAAAGATATGGG+AGG - chr1_2:46567767-46567786 None:intergenic 25.0%
!! TTTTCAACATCATGTATAAC+AGG + chr1_2:46568205-46568224 Msa0073120:CDS 25.0%
! TTATACAAAATGAACCTCTT+TGG + chr1_2:46568413-46568432 Msa0073120:CDS 25.0%
! AACTTAATCATCATGTTACT+TGG - chr1_2:46568448-46568467 None:intergenic 25.0%
!!! TAACTTTTAAAAAACTACGG+TGG + chr1_2:46568703-46568722 Msa0073120:intron 25.0%
! AAAGCAACTAAATACATGTT+TGG - chr1_2:46568758-46568777 None:intergenic 25.0%
!!! GTCTATTGATTTTAATTCTC+CGG + chr1_2:46569120-46569139 Msa0073120:intron 25.0%
!! AATTTGCTTATATTTAGGAC+CGG - chr1_2:46569142-46569161 None:intergenic 25.0%
! CATTCAATTAATGATGTATG+TGG + chr1_2:46569176-46569195 Msa0073120:intron 25.0%
! CATTCAATTAATGATGTATG+TGG - chr1_2:46569176-46569195 None:intergenic 25.0%
!! ATATGATTTCAAAAGTGTAG+GGG - chr1_2:46569365-46569384 None:intergenic 25.0%
!! GATATGATTTCAAAAGTGTA+GGG - chr1_2:46569366-46569385 None:intergenic 25.0%
!! TGATATGATTTCAAAAGTGT+AGG - chr1_2:46569367-46569386 None:intergenic 25.0%
! ACTAAAATATAAAAGGGTCT+TGG + chr1_2:46569432-46569451 Msa0073120:intron 25.0%
! AATTACACTTCCTCTAATTT+GGG - chr1_2:46569526-46569545 None:intergenic 25.0%
! TAATTACACTTCCTCTAATT+TGG - chr1_2:46569527-46569546 None:intergenic 25.0%
! TTTAGCATTAGAGAAATACT+TGG + chr1_2:46569602-46569621 Msa0073120:intron 25.0%
! GAATAATAAATGCTAAGAGA+AGG - chr1_2:46569791-46569810 None:intergenic 25.0%
! TTTCTTTGTGTGAACAAATA+AGG + chr1_2:46570078-46570097 Msa0073120:intron 25.0%
! ACAAAATTTGTAATGCTTGA+AGG + chr1_2:46570123-46570142 Msa0073120:intron 25.0%
! ATACCTTGACTAAAAATAGT+TGG - chr1_2:46570531-46570550 None:intergenic 25.0%
! GATTATAGTATGTCATATTC+TGG + chr1_2:46572017-46572036 Msa0073120:CDS 25.0%
! TTTGGAACATTGTTGATGAA+GGG - chr1_2:46567484-46567503 None:intergenic 30.0%
GTAAGAAGAGAGAAAAATGA+GGG - chr1_2:46567677-46567696 None:intergenic 30.0%
AGTAAGAAGAGAGAAAAATG+AGG - chr1_2:46567678-46567697 None:intergenic 30.0%
AAAGAGCTAAGAAAGAAACA+GGG - chr1_2:46567709-46567728 None:intergenic 30.0%
GATATGGGAGGAAAAAAAAA+TGG - chr1_2:46567755-46567774 None:intergenic 30.0%
TTATGTAAAAGGGTAGATCT+GGG + chr1_2:46567812-46567831 Msa0073120:intron 30.0%
AAATTCCTATTGTTCTTTGC+AGG + chr1_2:46568128-46568147 Msa0073120:intron 30.0%
ATTTCCAACAATCGTCTATT+GGG - chr1_2:46568234-46568253 None:intergenic 30.0%
!! TATCTTAAAGTACCAGGTTT+TGG - chr1_2:46568388-46568407 None:intergenic 30.0%
AATAGCTACAAAACCATTGA+TGG + chr1_2:46568487-46568506 Msa0073120:CDS 30.0%
TCACATACTTATATGGTAGA+AGG - chr1_2:46569068-46569087 None:intergenic 30.0%
GATGTATGTGGTTCATATTA+TGG - chr1_2:46569203-46569222 None:intergenic 30.0%
AAATATAAAAGGGTCTTGGA+TGG + chr1_2:46569436-46569455 Msa0073120:intron 30.0%
ACAAGACTAAACGAAACTTA+AGG + chr1_2:46569478-46569497 Msa0073120:intron 30.0%
CAAGACTAAACGAAACTTAA+GGG + chr1_2:46569479-46569498 Msa0073120:intron 30.0%
AAGACTAAACGAAACTTAAG+GGG + chr1_2:46569480-46569499 Msa0073120:intron 30.0%
ATTTACCACTTGAACTTAGA+AGG - chr1_2:46569945-46569964 None:intergenic 30.0%
! ACAATAGCATTCAACCATTT+TGG + chr1_2:46570399-46570418 Msa0073120:CDS 30.0%
GAACTAATTGTTGACCAAAA+TGG - chr1_2:46570416-46570435 None:intergenic 30.0%
!! GAGCTAGATTTTGAAAATCA+AGG - chr1_2:46570637-46570656 None:intergenic 30.0%
GCAACAATGTTAGTTATCTT+TGG - chr1_2:46570684-46570703 None:intergenic 30.0%
ACATTGTTGCAAAACAAAAG+AGG + chr1_2:46570694-46570713 Msa0073120:intron 30.0%
!!! TTTTGTTGATTCAGGTGATA+AGG + chr1_2:46570890-46570909 Msa0073120:CDS 30.0%
!! TTTGTTGATTCAGGTGATAA+GGG + chr1_2:46570891-46570910 Msa0073120:CDS 30.0%
GAAAAGAAGGAAAAGCAAAA+GGG - chr1_2:46571025-46571044 None:intergenic 30.0%
AGAAAAGAAGGAAAAGCAAA+AGG - chr1_2:46571026-46571045 None:intergenic 30.0%
TAAAGGATGCTTAGAAAAGA+AGG - chr1_2:46571038-46571057 None:intergenic 30.0%
TGAACACTAAAAACTTGGTT+TGG - chr1_2:46571087-46571106 None:intergenic 30.0%
CCAAATGAACACTAAAAACT+TGG - chr1_2:46571092-46571111 None:intergenic 30.0%
!!! CCAAGTTTTTAGTGTTCATT+TGG + chr1_2:46571089-46571108 Msa0073120:intron 30.0%
AAAAAGGGTTACAAGAGAAT+GGG - chr1_2:46572090-46572109 None:intergenic 30.0%
ACATAAGAGTCCAACAAAAA+GGG - chr1_2:46572105-46572124 None:intergenic 30.0%
AACATAAGAGTCCAACAAAA+AGG - chr1_2:46572106-46572125 None:intergenic 30.0%
CTGTTAAAGATCTATGGTTA+GGG - chr1_2:46572135-46572154 None:intergenic 30.0%
!!! GTTTTGCTGTTAAAGATCTA+TGG - chr1_2:46572141-46572160 None:intergenic 30.0%
TTAACATTGCCCTTATCTTA+AGG - chr1_2:46572249-46572268 None:intergenic 30.0%
TTAAGATAAGGGCAATGTTA+AGG + chr1_2:46572248-46572267 Msa0073120:three_prime_UTR 30.0%
! GTTTGGAACATTGTTGATGA+AGG - chr1_2:46567485-46567504 None:intergenic 35.0%
TTAGGAAAATGCAGGTTGTT+TGG - chr1_2:46567502-46567521 None:intergenic 35.0%
TAGTGAGATTAGGAAAATGC+AGG - chr1_2:46567510-46567529 None:intergenic 35.0%
TGATGTTCCATGGTTGAAAA+AGG - chr1_2:46567540-46567559 None:intergenic 35.0%
! TTGGAACAATGTAGGTTTTG+TGG - chr1_2:46567653-46567672 None:intergenic 35.0%
AAGAGAGAAAAATGAGGGTT+TGG - chr1_2:46567672-46567691 None:intergenic 35.0%
AAGAGCTAAGAAAGAAACAG+GGG - chr1_2:46567708-46567727 None:intergenic 35.0%
CAAAGAGCTAAGAAAGAAAC+AGG - chr1_2:46567710-46567729 None:intergenic 35.0%
GATACCATAGAGAACTAACT+TGG + chr1_2:46567729-46567748 Msa0073120:intron 35.0%
GTTATGTAAAAGGGTAGATC+TGG + chr1_2:46567811-46567830 Msa0073120:intron 35.0%
ACTTTCCTGCAAAGAACAAT+AGG - chr1_2:46568136-46568155 None:intergenic 35.0%
CATTTCCAACAATCGTCTAT+TGG - chr1_2:46568235-46568254 None:intergenic 35.0%
! ACTGCATATCTTAAAGTACC+AGG - chr1_2:46568394-46568413 None:intergenic 35.0%
TAGTATACGATTGGTATCAC+TGG + chr1_2:46568629-46568648 Msa0073120:intron 35.0%
TAAATGCTAAGAGAAGGTCT+TGG - chr1_2:46569785-46569804 None:intergenic 35.0%
! TTTTGCCTTCTAAGTTCAAG+TGG + chr1_2:46569937-46569956 Msa0073120:intron 35.0%
! GTTCTAAATCCATAGTGTTC+TGG - chr1_2:46570171-46570190 None:intergenic 35.0%
! GGATTTAGAACAGAATCAGA+CGG + chr1_2:46570180-46570199 Msa0073120:CDS 35.0%
GGAGATGGAATCTCAATATT+CGG + chr1_2:46570201-46570220 Msa0073120:CDS 35.0%
GAGATGGAATCTCAATATTC+GGG + chr1_2:46570202-46570221 Msa0073120:CDS 35.0%
TATTCGGGTCAAAAGACATA+TGG + chr1_2:46570217-46570236 Msa0073120:CDS 35.0%
GGTTTAATAGACGTCGTTAT+GGG + chr1_2:46570273-46570292 Msa0073120:CDS 35.0%
TAAAATCGTTGTTCACCACA+TGG - chr1_2:46570470-46570489 None:intergenic 35.0%
! TGAACAACGATTTTACGAGA+TGG + chr1_2:46570475-46570494 Msa0073120:CDS 35.0%
! GAACAACGATTTTACGAGAT+GGG + chr1_2:46570476-46570495 Msa0073120:CDS 35.0%
!!! GGACCAACTATTTTTAGTCA+AGG + chr1_2:46570525-46570544 Msa0073120:CDS 35.0%
CTAACTTTATCTCTGATGCA+AGG + chr1_2:46570741-46570760 Msa0073120:intron 35.0%
!!! GGAGCTTTTTTTGTTGATTC+AGG + chr1_2:46570882-46570901 Msa0073120:CDS 35.0%
!! TCGGATTTCTAGTCTTACTA+TGG + chr1_2:46570962-46570981 Msa0073120:CDS 35.0%
! GTGTATTTAGAACCACAGTA+GGG - chr1_2:46571186-46571205 None:intergenic 35.0%
! TGTGTATTTAGAACCACAGT+AGG - chr1_2:46571187-46571206 None:intergenic 35.0%
AGTATCAGAAGCAATCAAGT+AGG - chr1_2:46571629-46571648 None:intergenic 35.0%
AGTAAATTACTGTTCTCTCC+TGG + chr1_2:46571711-46571730 Msa0073120:intron 35.0%
GATAAGATAACAAGTCTTCC+AGG - chr1_2:46571732-46571751 None:intergenic 35.0%
! AAATGTGTTGATGAATGAGC+AGG + chr1_2:46571949-46571968 Msa0073120:intron 35.0%
! AATGTGTTGATGAATGAGCA+GGG + chr1_2:46571950-46571969 Msa0073120:intron 35.0%
CAAAAAGGGTTACAAGAGAA+TGG - chr1_2:46572091-46572110 None:intergenic 35.0%
! TCTCTTGTAACCCTTTTTGT+TGG + chr1_2:46572092-46572111 Msa0073120:CDS 35.0%
GCTGTTAAAGATCTATGGTT+AGG - chr1_2:46572136-46572155 None:intergenic 35.0%
AGGAGCAAAGTAGTGAGATT+AGG - chr1_2:46567520-46567539 None:intergenic 40.0%
!!! CTTTGCTCCTTTTTCAACCA+TGG + chr1_2:46567530-46567549 Msa0073120:CDS 40.0%
!! GGTTAAGCATTGATGTTCCA+TGG - chr1_2:46567550-46567569 None:intergenic 40.0%
!! CTTCTAAGGCAACAGATTCA+GGG - chr1_2:46567598-46567617 None:intergenic 40.0%
!! ACTTCTAAGGCAACAGATTC+AGG - chr1_2:46567599-46567618 None:intergenic 40.0%
TGTGTACCTGTGAACTTCTA+AGG - chr1_2:46567612-46567631 None:intergenic 40.0%
! ATGAGGGTTTGGAACAATGT+AGG - chr1_2:46567661-46567680 None:intergenic 40.0%
AAGAAAGAAACAGGGGAGAA+AGG - chr1_2:46567701-46567720 None:intergenic 40.0%
! ATGGCCAAGTTAGTTCTCTA+TGG - chr1_2:46567736-46567755 None:intergenic 40.0%
GAAACCCAATAGACGATTGT+TGG + chr1_2:46568227-46568246 Msa0073120:CDS 40.0%
TGCTAACCTTTGACGATTGT+TGG - chr1_2:46568272-46568291 None:intergenic 40.0%
AGGTTAGCAGATTGTGCTAT+AGG + chr1_2:46568283-46568302 Msa0073120:CDS 40.0%
GGTTAGCAGATTGTGCTATA+GGG + chr1_2:46568284-46568303 Msa0073120:CDS 40.0%
TTTGGACAAAATGCCAAAGG+AGG + chr1_2:46568307-46568326 Msa0073120:CDS 40.0%
CAAAATGCCAAAGGAGGAAA+AGG + chr1_2:46568313-46568332 Msa0073120:CDS 40.0%
ATTGACAGCATCATTGTCTG+AGG - chr1_2:46568365-46568384 None:intergenic 40.0%
CTTGGAAACACAATCCAAAG+AGG - chr1_2:46568430-46568449 None:intergenic 40.0%
! TACAAAACCATTGATGGTCG+TGG + chr1_2:46568493-46568512 Msa0073120:CDS 40.0%
!! GGTGCTGATGTTCATATTGT+TGG + chr1_2:46568514-46568533 Msa0073120:CDS 40.0%
GCTGATGTTCATATTGTTGG+TGG + chr1_2:46568517-46568536 Msa0073120:CDS 40.0%
! GATGTTCATATTGTTGGTGG+TGG + chr1_2:46568520-46568539 Msa0073120:CDS 40.0%
TCATGTATGTGCCAGAATCA+CGG - chr1_2:46568733-46568752 None:intergenic 40.0%
TCTCTCAAATGTCATTGTCG+CGG + chr1_2:46568893-46568912 Msa0073120:intron 40.0%
ACTTCCTCTAATTTGGGTCA+TGG - chr1_2:46569520-46569539 None:intergenic 40.0%
CAGATTGTTCACATGTGCAA+TGG - chr1_2:46569816-46569835 None:intergenic 40.0%
ACACTTTCACGTTGCAAAGA+CGG + chr1_2:46570252-46570271 Msa0073120:CDS 40.0%
CGGTTTAATAGACGTCGTTA+TGG + chr1_2:46570272-46570291 Msa0073120:CDS 40.0%
CTAGTAACATAACCTCGTTG+TGG - chr1_2:46570338-46570357 None:intergenic 40.0%
CACAACGAGGTTATGTTACT+AGG + chr1_2:46570336-46570355 Msa0073120:CDS 40.0%
AGATGGGAGATGTATGCTAT+TGG + chr1_2:46570492-46570511 Msa0073120:CDS 40.0%
ATGTATGCTATTGGTGGAAG+CGG + chr1_2:46570501-46570520 Msa0073120:CDS 40.0%
TATCTCTGATGCAAGGTAAC+CGG + chr1_2:46570748-46570767 Msa0073120:intron 40.0%
TCGTGGAATTGGAAATCTGA+AGG + chr1_2:46570843-46570862 Msa0073120:CDS 40.0%
GAAATCTGAAGGCGATGTTA+TGG + chr1_2:46570854-46570873 Msa0073120:CDS 40.0%
TTGATCCTAAAGCAGCTGAT+CGG + chr1_2:46570943-46570962 Msa0073120:CDS 40.0%
ATGAGCAGGGACAATAATCT+AGG + chr1_2:46571963-46571982 Msa0073120:intron 40.0%
GGGACAATAATCTAGGAATG+TGG + chr1_2:46571970-46571989 Msa0073120:intron 40.0%
ACTGACTGCTCCTTAAGATA+AGG + chr1_2:46572236-46572255 Msa0073120:three_prime_UTR 40.0%
CTGACTGCTCCTTAAGATAA+GGG + chr1_2:46572237-46572256 Msa0073120:three_prime_UTR 40.0%
GGAATGGAAGGGTAAGTAGT+AGG - chr1_2:46567390-46567409 None:intergenic 45.0%
TTACCCTTCCATTCCACTAG+TGG + chr1_2:46567395-46567414 Msa0073120:five_prime_UTR 45.0%
TCTCCACTAGTGGAATGGAA+GGG - chr1_2:46567401-46567420 None:intergenic 45.0%
ATGCTTAACCTCACTCTTCC+TGG + chr1_2:46567560-46567579 Msa0073120:CDS 45.0%
CTGTTGCCTTAGAAGTTCAC+AGG + chr1_2:46567603-46567622 Msa0073120:CDS 45.0%
TTGGAAATGCGACCCAGATT+GGG + chr1_2:46568246-46568265 Msa0073120:CDS 45.0%
ATTGGGCCAACAATCGTCAA+AGG + chr1_2:46568263-46568282 Msa0073120:CDS 45.0%
GCAGATTGTGCTATAGGGTT+TGG + chr1_2:46568289-46568308 Msa0073120:CDS 45.0%
GGGTTTGGACAAAATGCCAA+AGG + chr1_2:46568304-46568323 Msa0073120:CDS 45.0%
AATGCCAAAGGAGGAAAAGG+TGG + chr1_2:46568316-46568335 Msa0073120:CDS 45.0%
! TTTGCCACCTTTTCCTCCTT+TGG - chr1_2:46568323-46568342 None:intergenic 45.0%
GATGCTGTCAATCCAAAACC+TGG + chr1_2:46568373-46568392 Msa0073120:CDS 45.0%
GTTCATCATTGTCATCCCTC+AGG + chr1_2:46568592-46568611 Msa0073120:CDS 45.0%
CTCTCAAATGTCATTGTCGC+GGG + chr1_2:46568894-46568913 Msa0073120:intron 45.0%
TCTCAAATGTCATTGTCGCG+GGG + chr1_2:46568895-46568914 Msa0073120:intron 45.0%
! TTGGGTCATGGCCTCTTTTA+GGG - chr1_2:46569508-46569527 None:intergenic 45.0%
! TTTGGGTCATGGCCTCTTTT+AGG - chr1_2:46569509-46569528 None:intergenic 45.0%
AGAACAGAATCAGACGGAGA+TGG + chr1_2:46570186-46570205 Msa0073120:CDS 45.0%
! TGCAACGTGAAAGTGTGCAA+TGG - chr1_2:46570248-46570267 None:intergenic 45.0%
GTGGTGTGAGAAATGGTTGT+TGG - chr1_2:46570319-46570338 None:intergenic 45.0%
! TTCCTGAGTCTGGTTTGTAG+TGG - chr1_2:46570371-46570390 None:intergenic 45.0%
GTTACTTGCATTCCTGAGTC+TGG - chr1_2:46570381-46570400 None:intergenic 45.0%
TGGGAGATGTATGCTATTGG+TGG + chr1_2:46570495-46570514 Msa0073120:CDS 45.0%
TGTATGCTATTGGTGGAAGC+GGG + chr1_2:46570502-46570521 Msa0073120:CDS 45.0%
GATGCAAGGTAACCGGTATA+CGG + chr1_2:46570755-46570774 Msa0073120:intron 45.0%
GATTCAGGTGATAAGGGTGA+AGG + chr1_2:46570897-46570916 Msa0073120:CDS 45.0%
! GAAATCCGATCAGCTGCTTT+AGG - chr1_2:46570951-46570970 None:intergenic 45.0%
!! TCTAGTCTTACTATGGCTGC+TGG + chr1_2:46570969-46570988 Msa0073120:CDS 45.0%
! GATTTTCGTCAACCCTACTG+TGG + chr1_2:46571171-46571190 Msa0073120:intron 45.0%
!! ATGTGGACAAGAGCACCAAA+CGG + chr1_2:46571987-46572006 Msa0073120:CDS 45.0%
CTATAATCACCACCACCGTT+TGG - chr1_2:46572005-46572024 None:intergenic 45.0%
!!! TAAAAAAATTTCTTTTTTTT+TGG + chr1_2:46567861-46567880 Msa0073120:intron 5.0%
!!! AAAAAAATTTCTTTTTTTTT+GGG + chr1_2:46567862-46567881 Msa0073120:intron 5.0%
!! ATTCAAATTAATAAAAATAA+AGG + chr1_2:46571525-46571544 Msa0073120:intron 5.0%
CTCTCCACTAGTGGAATGGA+AGG - chr1_2:46567402-46567421 None:intergenic 50.0%
CTCACTCTCCACTAGTGGAA+TGG - chr1_2:46567406-46567425 None:intergenic 50.0%
ACTCACTCACTCTCCACTAG+TGG - chr1_2:46567411-46567430 None:intergenic 50.0%
GATGTTGACCAGGAAGAGTG+AGG - chr1_2:46567571-46567590 None:intergenic 50.0%
AAGGCAACAGATTCAGGGTC+TGG - chr1_2:46567593-46567612 None:intergenic 50.0%
GTTGGAAATGCGACCCAGAT+TGG + chr1_2:46568245-46568264 Msa0073120:CDS 50.0%
GACGATTGTTGGCCCAATCT+GGG - chr1_2:46568261-46568280 None:intergenic 50.0%
TGACGATTGTTGGCCCAATC+TGG - chr1_2:46568262-46568281 None:intergenic 50.0%
ATCAGCACCACGACCATCAA+TGG - chr1_2:46568503-46568522 None:intergenic 50.0%
! TGGGTCATGGCCTCTTTTAG+GGG - chr1_2:46569507-46569526 None:intergenic 50.0%
GAGGCCATGACCCAAATTAG+AGG + chr1_2:46569513-46569532 Msa0073120:intron 50.0%
CGTTCGAGTCCAGAACACTA+TGG + chr1_2:46570159-46570178 Msa0073120:CDS 50.0%
CCTCGTTGTGGTGTGAGAAA+TGG - chr1_2:46570326-46570345 None:intergenic 50.0%
CCATTTCTCACACCACAACG+AGG + chr1_2:46570323-46570342 Msa0073120:CDS 50.0%
! CTGGTTTGTAGTGGTCACTG+TGG - chr1_2:46570362-46570381 None:intergenic 50.0%
GACCACTACAAACCAGACTC+AGG + chr1_2:46570366-46570385 Msa0073120:CDS 50.0%
AGAATGCCACGTTGCAGACT+CGG + chr1_2:46570438-46570457 Msa0073120:CDS 50.0%
ATGTATCCGAGTCTGCAACG+TGG - chr1_2:46570447-46570466 None:intergenic 50.0%
CAGACTCGGATACATCCATG+TGG + chr1_2:46570452-46570471 Msa0073120:CDS 50.0%
GTATGCTATTGGTGGAAGCG+GGG + chr1_2:46570503-46570522 Msa0073120:CDS 50.0%
TATGCTATTGGTGGAAGCGG+GGG + chr1_2:46570504-46570523 Msa0073120:CDS 50.0%
GAAGCAAGTGACGAAGAGGT+TGG + chr1_2:46570797-46570816 Msa0073120:CDS 50.0%
GTGACGAAGAGGTTGGATTC+TGG + chr1_2:46570804-46570823 Msa0073120:CDS 50.0%
TGGATTCTGGTGACAGCGAA+TGG + chr1_2:46570817-46570836 Msa0073120:CDS 50.0%
! GCGAATGGACTTCGTGGAAT+TGG + chr1_2:46570832-46570851 Msa0073120:CDS 50.0%
GAAGGCGATGTTATGGCGAA+TGG + chr1_2:46570861-46570880 Msa0073120:CDS 50.0%
ACTATGGCTGCTGGTGTTCT+TGG + chr1_2:46570978-46570997 Msa0073120:CDS 50.0%
!! CTGGTGTTCTTGGTGTTGCT+AGG + chr1_2:46570988-46571007 Msa0073120:CDS 50.0%
TCAGGGTCTGGATGTTGACC+AGG - chr1_2:46567581-46567600 None:intergenic 55.0%
CTTAAGGGGCCCCCTAAAAG+AGG + chr1_2:46569494-46569513 Msa0073120:intron 55.0%
! GGGTCATGGCCTCTTTTAGG+GGG - chr1_2:46569506-46569525 None:intergenic 55.0%
TAACCGGTATACGGCTCCTG+AGG + chr1_2:46570764-46570783 Msa0073120:CDS 55.0%
CATCCTCAGGAGCCGTATAC+CGG - chr1_2:46570770-46570789 None:intergenic 55.0%
TGCTTCGCGTCAACATCCTC+AGG - chr1_2:46570783-46570802 None:intergenic 55.0%
ACGCGAAGCAAGTGACGAAG+AGG + chr1_2:46570793-46570812 Msa0073120:CDS 55.0%
! GTGACAGCGAATGGACTTCG+TGG + chr1_2:46570826-46570845 Msa0073120:CDS 55.0%
!! TGGACAAGAGCACCAAACGG+TGG + chr1_2:46571990-46572009 Msa0073120:CDS 55.0%
!! ACAAGAGCACCAAACGGTGG+TGG + chr1_2:46571993-46572012 Msa0073120:CDS 55.0%
ACGGTGGATCGCCGTGATTC+TGG + chr1_2:46568719-46568738 Msa0073120:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 46567363 46572284 46567363 ID=Msa0073120;Name=Msa0073120
chr1_2 mRNA 46567363 46572284 46567363 ID=Msa0073120-mRNA-1;Parent=Msa0073120;Name=Msa0073120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=131|1|1|1|1|1|5|133|474
chr1_2 exon 46567363 46567624 46567363 ID=Msa0073120-mRNA-1:exon:14123;Parent=Msa0073120-mRNA-1
chr1_2 exon 46568150 46568613 46568150 ID=Msa0073120-mRNA-1:exon:14124;Parent=Msa0073120-mRNA-1
chr1_2 exon 46570145 46570546 46570145 ID=Msa0073120-mRNA-1:exon:14125;Parent=Msa0073120-mRNA-1
chr1_2 exon 46570763 46571009 46570763 ID=Msa0073120-mRNA-1:exon:14126;Parent=Msa0073120-mRNA-1
chr1_2 exon 46571971 46572284 46571971 ID=Msa0073120-mRNA-1:exon:14127;Parent=Msa0073120-mRNA-1
chr1_2 five_prime_UTR 46567363 46567493 46567363 ID=Msa0073120-mRNA-1:five_prime_utr;Parent=Msa0073120-mRNA-1
chr1_2 CDS 46567494 46567624 46567494 ID=Msa0073120-mRNA-1:cds;Parent=Msa0073120-mRNA-1
chr1_2 CDS 46568150 46568613 46568150 ID=Msa0073120-mRNA-1:cds;Parent=Msa0073120-mRNA-1
chr1_2 CDS 46570145 46570546 46570145 ID=Msa0073120-mRNA-1:cds;Parent=Msa0073120-mRNA-1
chr1_2 CDS 46570763 46571009 46570763 ID=Msa0073120-mRNA-1:cds;Parent=Msa0073120-mRNA-1
chr1_2 CDS 46571971 46572151 46571971 ID=Msa0073120-mRNA-1:cds;Parent=Msa0073120-mRNA-1
chr1_2 three_prime_UTR 46572152 46572284 46572152 ID=Msa0073120-mRNA-1:three_prime_utr;Parent=Msa0073120-mRNA-1
Gene Sequence

>Msa0073120

ATGTTCCAAACAACCTGCATTTTCCTAATCTCACTACTTTGCTCCTTTTTCAACCATGGAACATCAATGCTTAACCTCACTCTTCCTGGTCAACATCCAGACCCTGAATCTGTTGCCTTAGAAGTTCACAGGAAAGTGAATGTTTCAATGTTAAGAAGAGAAATGCTATCAATATCAAACAAAGAGTTTTCAACATCATGTATAACAGGAAACCCAATAGACGATTGTTGGAAATGCGACCCAGATTGGGCCAACAATCGTCAAAGGTTAGCAGATTGTGCTATAGGGTTTGGACAAAATGCCAAAGGAGGAAAAGGTGGCAAATTTTACATTGTCACAGATTCCTCAGACAATGATGCTGTCAATCCAAAACCTGGTACTTTAAGATATGCAGTTATACAAAATGAACCTCTTTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCTCAAGAGCTTATTTTTAATAGCTACAAAACCATTGATGGTCGTGGTGCTGATGTTCATATTGTTGGTGGTGGTTGCATCACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCCTCAGGTAACACTAACGTGCGTTCGAGTCCAGAACACTATGGATTTAGAACAGAATCAGACGGAGATGGAATCTCAATATTCGGGTCAAAAGACATATGGATAGACCATTGCACACTTTCACGTTGCAAAGACGGTTTAATAGACGTCGTTATGGGTTCATCAGCAATAACAATCTCCAACAACCATTTCTCACACCACAACGAGGTTATGTTACTAGGCCACAGTGACCACTACAAACCAGACTCAGGAATGCAAGTAACAATAGCATTCAACCATTTTGGTCAACAATTAGTTCAGAGAATGCCACGTTGCAGACTCGGATACATCCATGTGGTGAACAACGATTTTACGAGATGGGAGATGTATGCTATTGGTGGAAGCGGGGGACCAACTATTTTTAGTCAAGGTAACCGGTATACGGCTCCTGAGGATGTTGACGCGAAGCAAGTGACGAAGAGGTTGGATTCTGGTGACAGCGAATGGACTTCGTGGAATTGGAAATCTGAAGGCGATGTTATGGCGAATGGAGCTTTTTTTGTTGATTCAGGTGATAAGGGTGAAGGTAGTTTTCAGAAAGCTTATAGTGTTGATCCTAAAGCAGCTGATCGGATTTCTAGTCTTACTATGGCTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTAGGAATGTGGACAAGAGCACCAAACGGTGGTGGTGATTATAGTATGTCATATTCTGGAGAAGAAGAGTACACAGATGACATGTCAAAGAGTACAATGTTGTTGACCCATTCTCTTGTAACCCTTTTTGTTGGACTCTTATGTTTGTTGTCCCTAACCATAGATCTTTAA

Protein sequence

>Msa0073120

MFQTTCIFLISLLCSFFNHGTSMLNLTLPGQHPDPESVALEVHRKVNVSMLRREMLSISNKEFSTSCITGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDVVMGSSAITISNNHFSHHNEVMLLGHSDHYKPDSGMQVTIAFNHFGQQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTIFSQGNRYTAPEDVDAKQVTKRLDSGDSEWTSWNWKSEGDVMANGAFFVDSGDKGEGSFQKAYSVDPKAADRISSLTMAAGVLGVARDNNLGMWTRAPNGGGDYSMSYSGEEEYTDDMSKSTMLLTHSLVTLFVGLLCLLSLTIDL*