Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871080 | XP_003618445.1 | 77.500 | 400 | 85 | 2 | 1 | 399 | 1 | 396 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871080 | sp|Q9SD53|Y3720_ARATH | 27.381 | 420 | 268 | 8 | 18 | 408 | 39 | 450 | 3.70e-43 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871080 | G7KKD4 | 77.500 | 400 | 85 | 2 | 1 | 399 | 1 | 396 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607540 | Msa0871080 | 0.814374 | 1.591666e-51 | -8.615850e-47 |
| Msa0647830 | Msa0871080 | 0.810451 | 1.145091e-50 | -8.615850e-47 |
| Msa0678820 | Msa0871080 | 0.813474 | 2.513287e-51 | -8.615850e-47 |
| Msa0767080 | Msa0871080 | 0.811620 | 6.391557e-51 | -8.615850e-47 |
| Msa0832370 | Msa0871080 | 0.806494 | 8.006305e-50 | -8.615850e-47 |
| Msa0220740 | Msa0871080 | 0.816921 | 4.309934e-52 | -8.615850e-47 |
| Msa0226250 | Msa0871080 | 0.810041 | 1.403606e-50 | -8.615850e-47 |
| Msa0392180 | Msa0871080 | 0.804866 | 1.758361e-49 | -8.615850e-47 |
| Msa0449760 | Msa0871080 | 0.802451 | 5.574780e-49 | -8.615850e-47 |
| Msa0258760 | Msa0871080 | 0.802904 | 4.495069e-49 | -8.615850e-47 |
| Msa0302580 | Msa0871080 | -0.809429 | 1.900382e-50 | -8.615850e-47 |
| Msa0536220 | Msa0871080 | 0.806915 | 6.522842e-50 | -8.615850e-47 |
| Msa0553460 | Msa0871080 | 0.806062 | 9.871205e-50 | -8.615850e-47 |
| Msa0564510 | Msa0871080 | 0.806145 | 9.483911e-50 | -8.615850e-47 |
| Msa0599770 | Msa0871080 | 0.808127 | 3.608651e-50 | -8.615850e-47 |
| Msa0599890 | Msa0871080 | 0.809543 | 1.796224e-50 | -8.615850e-47 |
| Msa0846810 | Msa0871080 | 0.855561 | 5.808523e-62 | -8.615850e-47 |
| Msa0871080 | Msa0904370 | 0.812516 | 4.076935e-51 | -8.615850e-47 |
| Msa0871080 | Msa0942080 | -0.813575 | 2.387831e-51 | -8.615850e-47 |
| Msa0871080 | Msa0990960 | 0.800165 | 1.637559e-48 | -8.615850e-47 |
| Msa0871080 | Msa1075220 | -0.824519 | 7.725413e-54 | -8.615850e-47 |
| Msa0871080 | Msa1077390 | 0.823760 | 1.164281e-53 | -8.615850e-47 |
| Msa0871080 | Msa1139000 | -0.804520 | 2.076911e-49 | -8.615850e-47 |
| Msa0871080 | Msa1162550 | -0.829665 | 4.533056e-55 | -8.615850e-47 |
| Msa0871080 | Msa1186060 | 0.811363 | 7.267514e-51 | -8.615850e-47 |
| Msa0871080 | Msa1228210 | 0.826001 | 3.445937e-54 | -8.615850e-47 |
| Msa0871080 | Msa1271300 | 0.804987 | 1.659219e-49 | -8.615850e-47 |
| Msa0871080 | Msa1278840 | 0.811911 | 5.524325e-51 | -8.615850e-47 |
| Msa0871080 | Msa1386750 | 0.803290 | 3.740389e-49 | -8.615850e-47 |
| Msa0871080 | Msa1393040 | 0.806471 | 8.094010e-50 | -8.615850e-47 |
| Msa0871080 | Msa1451620 | -0.807451 | 5.021685e-50 | -8.615850e-47 |
| Msa0871080 | Msa1464940 | 0.802881 | 4.545927e-49 | -8.615850e-47 |
| Msa0871080 | Msa1466810 | 0.809517 | 1.819865e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871080 | MtrunA17_Chr6g0452501 | 77.500 | 400 | 85 | 2 | 1 | 399 | 1 | 396 | 0.0 | 615 |
| Msa0871080 | MtrunA17_Chr6g0452531 | 77.750 | 400 | 84 | 2 | 1 | 399 | 1 | 396 | 0.0 | 612 |
| Msa0871080 | MtrunA17_Chr6g0452601 | 74.334 | 413 | 101 | 1 | 1 | 408 | 1 | 413 | 0.0 | 606 |
| Msa0871080 | MtrunA17_Chr6g0452551 | 75.610 | 410 | 91 | 5 | 1 | 408 | 1 | 403 | 0.0 | 603 |
| Msa0871080 | MtrunA17_Chr6g0452561 | 73.810 | 420 | 98 | 3 | 1 | 408 | 1 | 420 | 0.0 | 602 |
| Msa0871080 | MtrunA17_Chr6g0452611 | 75.561 | 401 | 89 | 4 | 1 | 399 | 1 | 394 | 0.0 | 583 |
| Msa0871080 | MtrunA17_Chr6g0452591 | 68.238 | 403 | 119 | 3 | 9 | 408 | 39 | 435 | 0.0 | 544 |
| Msa0871080 | MtrunA17_Chr6g0452161 | 72.544 | 397 | 102 | 3 | 9 | 398 | 9 | 405 | 0.0 | 543 |
| Msa0871080 | MtrunA17_Chr6g0457371 | 71.250 | 400 | 105 | 3 | 1 | 399 | 1 | 391 | 0.0 | 542 |
| Msa0871080 | MtrunA17_Chr3g0138001 | 67.581 | 401 | 120 | 3 | 6 | 398 | 7 | 405 | 0.0 | 523 |
| Msa0871080 | MtrunA17_Chr6g0452571 | 70.938 | 320 | 86 | 3 | 90 | 408 | 30 | 343 | 6.58e-155 | 442 |
| Msa0871080 | MtrunA17_Chr7g0218171 | 61.318 | 349 | 76 | 4 | 62 | 408 | 1 | 292 | 2.82e-136 | 392 |
| Msa0871080 | MtrunA17_Chr6g0452541 | 78.571 | 196 | 42 | 0 | 203 | 398 | 24 | 219 | 1.29e-108 | 320 |
| Msa0871080 | MtrunA17_Chr3g0118601 | 40.185 | 433 | 222 | 7 | 5 | 408 | 20 | 444 | 1.20e-99 | 304 |
| Msa0871080 | MtrunA17_Chr2g0296801 | 39.437 | 355 | 195 | 6 | 62 | 408 | 1 | 343 | 4.21e-75 | 238 |
| Msa0871080 | MtrunA17_Chr8g0335061 | 33.933 | 445 | 219 | 14 | 15 | 409 | 17 | 436 | 2.46e-69 | 226 |
| Msa0871080 | MtrunA17_Chr8g0334971 | 33.486 | 436 | 228 | 12 | 18 | 409 | 20 | 437 | 3.65e-67 | 220 |
| Msa0871080 | MtrunA17_Chr8g0335071 | 35.198 | 429 | 221 | 13 | 25 | 409 | 37 | 452 | 5.15e-67 | 220 |
| Msa0871080 | MtrunA17_Chr8g0335021 | 34.186 | 430 | 230 | 12 | 25 | 409 | 27 | 448 | 2.76e-66 | 218 |
| Msa0871080 | MtrunA17_Chr8g0334951 | 34.742 | 426 | 220 | 16 | 18 | 407 | 22 | 425 | 6.11e-62 | 206 |
| Msa0871080 | MtrunA17_Chr8g0335011 | 29.747 | 474 | 239 | 13 | 18 | 409 | 29 | 490 | 1.91e-58 | 199 |
| Msa0871080 | MtrunA17_Chr3g0138021 | 59.172 | 169 | 36 | 2 | 231 | 399 | 2 | 137 | 5.52e-57 | 185 |
| Msa0871080 | MtrunA17_Chr8g0334911 | 32.160 | 426 | 240 | 14 | 15 | 409 | 18 | 425 | 4.29e-55 | 188 |
| Msa0871080 | MtrunA17_Chr7g0265891 | 29.293 | 396 | 247 | 9 | 17 | 390 | 43 | 427 | 1.24e-49 | 174 |
| Msa0871080 | MtrunA17_Chr5g0439641 | 26.457 | 446 | 261 | 11 | 15 | 416 | 27 | 449 | 7.14e-48 | 169 |
| Msa0871080 | MtrunA17_Chr5g0439721 | 27.500 | 440 | 261 | 13 | 7 | 408 | 8 | 427 | 7.15e-47 | 167 |
| Msa0871080 | MtrunA17_Chr2g0300311 | 31.421 | 401 | 236 | 13 | 25 | 401 | 50 | 435 | 9.46e-47 | 167 |
| Msa0871080 | MtrunA17_Chr5g0401791 | 31.075 | 428 | 242 | 13 | 10 | 390 | 82 | 503 | 1.88e-46 | 167 |
| Msa0871080 | MtrunA17_Chr2g0297831 | 29.798 | 396 | 246 | 13 | 26 | 401 | 68 | 451 | 2.42e-41 | 153 |
| Msa0871080 | MtrunA17_Chr6g0452581 | 69.608 | 102 | 25 | 3 | 289 | 388 | 1 | 98 | 1.38e-36 | 130 |
| Msa0871080 | MtrunA17_Chr6g0452511 | 68.293 | 82 | 26 | 0 | 289 | 370 | 1 | 82 | 8.70e-36 | 126 |
| Msa0871080 | MtrunA17_Chr5g0440401 | 30.952 | 168 | 114 | 2 | 241 | 408 | 44 | 209 | 2.67e-25 | 102 |
| Msa0871080 | MtrunA17_Chr5g0439681 | 32.386 | 176 | 115 | 4 | 241 | 415 | 137 | 309 | 1.08e-24 | 103 |
| Msa0871080 | MtrunA17_Chr7g0218161 | 76.271 | 59 | 14 | 0 | 1 | 59 | 1 | 59 | 1.50e-23 | 93.2 |
| Msa0871080 | MtrunA17_Chr8g0354871 | 27.962 | 211 | 137 | 3 | 209 | 405 | 164 | 373 | 2.66e-22 | 97.8 |
| Msa0871080 | MtrunA17_Chr5g0439661 | 30.814 | 172 | 103 | 3 | 26 | 181 | 29 | 200 | 7.49e-21 | 90.1 |
| Msa0871080 | MtrunA17_Chr1g0170351 | 25.417 | 480 | 260 | 18 | 12 | 415 | 17 | 474 | 1.83e-19 | 90.1 |
| Msa0871080 | MtrunA17_Chr7g0238111 | 24.312 | 436 | 270 | 15 | 9 | 407 | 14 | 426 | 1.98e-19 | 89.7 |
| Msa0871080 | MtrunA17_Chr3g0091831 | 24.938 | 401 | 250 | 13 | 11 | 369 | 29 | 420 | 1.98e-17 | 84.3 |
| Msa0871080 | MtrunA17_Chr7g0238131 | 24.939 | 413 | 253 | 14 | 47 | 406 | 1 | 409 | 3.17e-17 | 83.2 |
| Msa0871080 | MtrunA17_Chr2g0297821 | 30.769 | 169 | 109 | 4 | 239 | 401 | 2 | 168 | 1.02e-15 | 75.1 |
| Msa0871080 | MtrunA17_Chr7g0238511 | 25.000 | 420 | 262 | 15 | 33 | 417 | 37 | 438 | 1.31e-15 | 78.6 |
| Msa0871080 | MtrunA17_Chr7g0238101 | 22.222 | 468 | 271 | 14 | 20 | 410 | 22 | 473 | 1.00e-14 | 75.9 |
| Msa0871080 | MtrunA17_Chr4g0002861 | 25.749 | 167 | 107 | 3 | 23 | 172 | 40 | 206 | 4.06e-14 | 74.3 |
| Msa0871080 | MtrunA17_Chr4g0002861 | 28.846 | 156 | 108 | 3 | 237 | 391 | 375 | 528 | 2.79e-11 | 65.5 |
| Msa0871080 | MtrunA17_Chr7g0242071 | 32.639 | 144 | 86 | 3 | 30 | 162 | 34 | 177 | 6.67e-14 | 73.6 |
| Msa0871080 | MtrunA17_Chr4g0002901 | 26.347 | 167 | 106 | 3 | 23 | 172 | 40 | 206 | 7.64e-14 | 73.2 |
| Msa0871080 | MtrunA17_Chr4g0002901 | 27.586 | 174 | 125 | 1 | 237 | 410 | 375 | 547 | 1.28e-13 | 72.8 |
| Msa0871080 | MtrunA17_Chr4g0002911 | 28.161 | 174 | 124 | 1 | 237 | 410 | 373 | 545 | 1.16e-13 | 72.8 |
| Msa0871080 | MtrunA17_Chr7g0242151 | 32.026 | 153 | 89 | 4 | 25 | 162 | 29 | 181 | 2.15e-13 | 72.0 |
| Msa0871080 | MtrunA17_Chr3g0107251 | 25.559 | 313 | 174 | 12 | 30 | 300 | 35 | 330 | 3.28e-13 | 71.2 |
| Msa0871080 | MtrunA17_Chr7g0238091 | 29.444 | 180 | 118 | 6 | 244 | 417 | 45 | 221 | 2.10e-12 | 66.2 |
| Msa0871080 | MtrunA17_Chr7g0238191 | 22.673 | 419 | 267 | 14 | 12 | 390 | 12 | 413 | 5.70e-12 | 67.0 |
| Msa0871080 | MtrunA17_Chr7g0238171 | 33.537 | 164 | 94 | 8 | 263 | 417 | 364 | 521 | 1.45e-11 | 66.2 |
| Msa0871080 | MtrunA17_Chr7g0238231 | 30.000 | 180 | 117 | 6 | 244 | 417 | 316 | 492 | 6.23e-11 | 63.9 |
| Msa0871080 | MtrunA17_Chr7g0232531 | 26.036 | 169 | 111 | 4 | 9 | 163 | 14 | 182 | 7.49e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871080 | AT4G31980.1 | 39.173 | 411 | 229 | 8 | 6 | 408 | 275 | 672 | 2.58e-81 | 263 |
| Msa0871080 | AT5G11290.2 | 34.390 | 410 | 252 | 7 | 6 | 408 | 15 | 414 | 2.10e-73 | 236 |
| Msa0871080 | AT2G28580.5 | 33.253 | 415 | 216 | 11 | 25 | 408 | 109 | 493 | 6.98e-60 | 203 |
| Msa0871080 | AT2G28580.4 | 33.253 | 415 | 216 | 11 | 25 | 408 | 123 | 507 | 9.20e-60 | 203 |
| Msa0871080 | AT2G28580.6 | 32.706 | 425 | 222 | 12 | 25 | 408 | 41 | 442 | 3.29e-59 | 200 |
| Msa0871080 | AT2G28580.1 | 32.706 | 425 | 222 | 12 | 25 | 408 | 109 | 510 | 9.42e-59 | 201 |
| Msa0871080 | AT2G28580.2 | 32.706 | 425 | 222 | 12 | 25 | 408 | 123 | 524 | 1.37e-58 | 201 |
| Msa0871080 | AT3G50170.1 | 30.317 | 442 | 260 | 11 | 10 | 410 | 94 | 528 | 7.75e-57 | 196 |
| Msa0871080 | AT3G50140.1 | 29.748 | 437 | 269 | 9 | 8 | 410 | 96 | 528 | 2.11e-56 | 194 |
| Msa0871080 | AT3G50150.1 | 30.115 | 435 | 269 | 11 | 7 | 410 | 68 | 498 | 1.01e-55 | 192 |
| Msa0871080 | AT2G44930.1 | 31.429 | 420 | 237 | 11 | 25 | 407 | 84 | 489 | 4.81e-55 | 190 |
| Msa0871080 | AT3G50120.1 | 30.714 | 420 | 253 | 11 | 26 | 410 | 104 | 520 | 1.32e-54 | 189 |
| Msa0871080 | AT3G50160.1 | 30.238 | 420 | 263 | 10 | 6 | 410 | 86 | 490 | 1.40e-53 | 186 |
| Msa0871080 | AT5G11290.1 | 31.356 | 354 | 227 | 6 | 62 | 408 | 1 | 345 | 5.17e-51 | 176 |
| Msa0871080 | AT3G50180.1 | 30.455 | 440 | 261 | 14 | 7 | 414 | 156 | 582 | 1.08e-49 | 177 |
| Msa0871080 | AT2G36430.1 | 28.788 | 396 | 252 | 9 | 18 | 390 | 31 | 419 | 2.32e-48 | 171 |
| Msa0871080 | AT3G50130.1 | 29.356 | 419 | 253 | 10 | 8 | 390 | 122 | 533 | 5.21e-47 | 169 |
| Msa0871080 | AT3G47250.3 | 27.644 | 416 | 270 | 10 | 18 | 406 | 54 | 465 | 2.84e-46 | 166 |
| Msa0871080 | AT3G47250.2 | 27.644 | 416 | 270 | 10 | 18 | 406 | 54 | 465 | 2.84e-46 | 166 |
| Msa0871080 | AT3G47250.1 | 27.644 | 416 | 270 | 10 | 18 | 406 | 54 | 465 | 2.84e-46 | 166 |
| Msa0871080 | AT3G50190.1 | 28.235 | 425 | 262 | 10 | 8 | 410 | 79 | 482 | 3.25e-46 | 166 |
| Msa0871080 | AT5G22540.1 | 28.395 | 405 | 256 | 8 | 8 | 390 | 15 | 407 | 9.40e-46 | 164 |
| Msa0871080 | AT1G67150.4 | 29.032 | 403 | 254 | 10 | 24 | 406 | 5 | 395 | 1.76e-44 | 159 |
| Msa0871080 | AT1G67150.1 | 29.032 | 403 | 254 | 10 | 24 | 406 | 5 | 395 | 1.76e-44 | 159 |
| Msa0871080 | AT3G47200.1 | 27.381 | 420 | 268 | 8 | 18 | 408 | 39 | 450 | 3.76e-44 | 160 |
| Msa0871080 | AT3G47200.2 | 27.381 | 420 | 268 | 8 | 18 | 408 | 39 | 450 | 3.76e-44 | 160 |
| Msa0871080 | AT5G22550.2 | 27.468 | 466 | 257 | 11 | 14 | 410 | 26 | 479 | 5.24e-44 | 160 |
| Msa0871080 | AT1G67150.2 | 28.747 | 407 | 254 | 10 | 24 | 406 | 5 | 399 | 7.62e-44 | 158 |
| Msa0871080 | AT3G44710.1 | 26.882 | 465 | 267 | 11 | 18 | 415 | 40 | 498 | 1.88e-43 | 159 |
| Msa0871080 | AT3G47210.1 | 28.997 | 369 | 232 | 6 | 18 | 367 | 86 | 443 | 5.01e-42 | 154 |
| Msa0871080 | AT2G28580.3 | 31.503 | 346 | 175 | 11 | 25 | 329 | 123 | 447 | 5.61e-41 | 151 |
| Msa0871080 | AT5G22560.1 | 25.054 | 467 | 262 | 10 | 25 | 410 | 47 | 506 | 1.87e-40 | 151 |
| Msa0871080 | AT5G22550.1 | 25.275 | 455 | 232 | 11 | 14 | 410 | 26 | 430 | 1.46e-32 | 128 |
| Msa0871080 | AT3G60470.1 | 38.286 | 175 | 104 | 3 | 235 | 408 | 358 | 529 | 1.69e-30 | 123 |
| Msa0871080 | AT3G60470.1 | 30.568 | 229 | 114 | 10 | 26 | 220 | 33 | 250 | 3.00e-17 | 84.3 |
| Msa0871080 | AT1G67150.3 | 25.564 | 399 | 230 | 13 | 24 | 406 | 5 | 352 | 1.48e-29 | 118 |
| Msa0871080 | AT3G50140.2 | 26.984 | 315 | 188 | 9 | 8 | 286 | 96 | 404 | 3.33e-29 | 118 |
| Msa0871080 | AT1G65985.1 | 25.408 | 429 | 238 | 14 | 26 | 390 | 15 | 425 | 3.80e-27 | 113 |
| Msa0871080 | AT1G65985.2 | 25.408 | 429 | 238 | 14 | 26 | 390 | 15 | 425 | 3.80e-27 | 113 |
| Msa0871080 | AT3G50170.2 | 26.603 | 312 | 181 | 11 | 10 | 280 | 94 | 398 | 1.19e-25 | 108 |
| Msa0871080 | AT3G50190.2 | 27.181 | 298 | 167 | 9 | 8 | 281 | 79 | 350 | 3.43e-25 | 105 |
| Msa0871080 | AT3G50150.2 | 27.010 | 311 | 192 | 11 | 7 | 286 | 68 | 374 | 1.29e-24 | 105 |
| Msa0871080 | AT3G50190.4 | 26.821 | 302 | 171 | 9 | 8 | 285 | 79 | 354 | 2.60e-24 | 103 |
| Msa0871080 | AT3G50190.3 | 26.821 | 302 | 171 | 9 | 8 | 285 | 79 | 354 | 2.60e-24 | 103 |
| Msa0871080 | AT3G02645.1 | 29.114 | 158 | 99 | 3 | 23 | 172 | 41 | 193 | 4.27e-15 | 77.4 |
| Msa0871080 | AT3G44700.1 | 30.275 | 109 | 68 | 3 | 25 | 125 | 48 | 156 | 1.25e-13 | 70.1 |
Find 71 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGACTTTCCATATTT+TGG | 0.129859 | 6_1:+5928844 | None:intergenic |
| TACTGATTATGTTTCTGTTT+TGG | 0.238712 | 6_1:-5928112 | Msa0871080:CDS |
| TTATTACAATAAATCAAAAT+TGG | 0.240088 | 6_1:-5928448 | Msa0871080:CDS |
| ATTGGCTAACCAAGGTTTAA+AGG | 0.247641 | 6_1:+5928620 | None:intergenic |
| TCTGTAGCTAACTTGTTTAA+TGG | 0.252482 | 6_1:-5928009 | Msa0871080:CDS |
| CAAACTGCTGCTTCCATTGC+TGG | 0.253565 | 6_1:-5927850 | Msa0871080:CDS |
| TCAGTAATATATGACTTATC+AGG | 0.258209 | 6_1:+5928129 | None:intergenic |
| CGAAACTTTATTTCGGAATC+TGG | 0.258359 | 6_1:-5928175 | Msa0871080:CDS |
| ACAAGTTCATCATGAGAAAA+TGG | 0.306284 | 6_1:+5928711 | None:intergenic |
| TTGGATTACCTTATAAATAC+TGG | 0.312190 | 6_1:-5928093 | Msa0871080:CDS |
| TCAAAATTGGATTCCGATAA+GGG | 0.319990 | 6_1:-5928435 | Msa0871080:CDS |
| CATCCGTACCAGTATTTATA+AGG | 0.321897 | 6_1:+5928085 | None:intergenic |
| GAATAACAGCGTTTGAAATC+AGG | 0.329629 | 6_1:+5928744 | None:intergenic |
| CTATTGAAAGTCAGGCTATT+AGG | 0.333558 | 6_1:-5928356 | Msa0871080:CDS |
| ATTTCGGAATCTGGTTGCTT+TGG | 0.363887 | 6_1:-5928166 | Msa0871080:CDS |
| ACTTGTTCAGAGGGAAATAC+TGG | 0.364801 | 6_1:-5928055 | Msa0871080:CDS |
| ATGATACCGAAACTTTATTT+CGG | 0.365141 | 6_1:-5928182 | Msa0871080:CDS |
| TATACTAATATCACCCTTAT+CGG | 0.367150 | 6_1:+5928422 | None:intergenic |
| ATCAAAATTGGATTCCGATA+AGG | 0.379517 | 6_1:-5928436 | Msa0871080:CDS |
| TTGGCTAACCAAGGTTTAAA+GGG | 0.399160 | 6_1:+5928621 | None:intergenic |
| AATTGTTAGAAGCTGGAGTT+AGG | 0.400251 | 6_1:-5928290 | Msa0871080:CDS |
| AATTCCTCGATTAAGAGTTC+AGG | 0.402982 | 6_1:-5928205 | Msa0871080:CDS |
| CGTTGACTGTTGCATTTACA+AGG | 0.404937 | 6_1:-5928955 | Msa0871080:CDS |
| GGGCCAATGGAAACGACATT+GGG | 0.405405 | 6_1:+5928891 | None:intergenic |
| ATAAGGGTGATATTAGTATA+AGG | 0.405612 | 6_1:-5928419 | Msa0871080:CDS |
| GTAGTGAGTTTAAGAAAAGA+AGG | 0.409038 | 6_1:+5928483 | None:intergenic |
| CTAATAGCCTGACTTTCAAT+AGG | 0.414604 | 6_1:+5928357 | None:intergenic |
| GCAACATCCTATTGAAAGTC+AGG | 0.417419 | 6_1:-5928364 | Msa0871080:CDS |
| AAAGAAGGGATCGTAGTGTT+AGG | 0.432961 | 6_1:+5928498 | None:intergenic |
| CAGATTCCGAAATAAAGTTT+CGG | 0.441185 | 6_1:+5928176 | None:intergenic |
| GTGGGTTTCCCTTTAAACCT+TGG | 0.444521 | 6_1:-5928629 | Msa0871080:CDS |
| GGCACTTCACTGATCTGATT+AGG | 0.448554 | 6_1:-5928398 | Msa0871080:CDS |
| TTCGGACATGTTATCATGGT+GGG | 0.449289 | 6_1:-5928647 | Msa0871080:CDS |
| GAAATACTGGAAAATTTGCT+TGG | 0.452996 | 6_1:-5928042 | Msa0871080:CDS |
| TATGTCATCCTTCCGCTTGG+TGG | 0.456120 | 6_1:-5929021 | Msa0871080:CDS |
| GTGATTATTGCAAAACTCCT+TGG | 0.460004 | 6_1:-5927873 | Msa0871080:CDS |
| ATAAGTTGAAGGCTGCTCTC+AGG | 0.488978 | 6_1:-5927897 | Msa0871080:CDS |
| TTAAACTTGCGTTGGTTCGT+TGG | 0.493243 | 6_1:+5928799 | None:intergenic |
| GCAACTGAATTGTTAGAAGC+TGG | 0.497793 | 6_1:-5928297 | Msa0871080:CDS |
| TAAGTCTTCTATTATACCAT+TGG | 0.502124 | 6_1:+5928602 | None:intergenic |
| GAATCCTAGGCATAAGTTGA+AGG | 0.504259 | 6_1:-5927908 | Msa0871080:CDS |
| TAGTGAGTTTAAGAAAAGAA+GGG | 0.505002 | 6_1:+5928484 | None:intergenic |
| TAGGCACGAGTTCAACGAAC+TGG | 0.510230 | 6_1:-5928337 | Msa0871080:CDS |
| GGGGCCAATGGAAACGACAT+TGG | 0.525891 | 6_1:+5928890 | None:intergenic |
| GTAAATGTTTACTTGACTTG+AGG | 0.531509 | 6_1:-5928248 | Msa0871080:CDS |
| TATAAATACTGGTACGGATG+CGG | 0.536970 | 6_1:-5928082 | Msa0871080:CDS |
| CAACGCAAGTTTAAACACCT+TGG | 0.541573 | 6_1:-5928790 | Msa0871080:CDS |
| CAGTAATATATGACTTATCA+GGG | 0.541796 | 6_1:+5928130 | None:intergenic |
| CAATATGTCATCCTTCCGCT+TGG | 0.542036 | 6_1:-5929024 | None:intergenic |
| TTTAAACCTTGGTTAGCCAA+TGG | 0.545466 | 6_1:-5928618 | Msa0871080:CDS |
| GCAGCCTTCAACTTATGCCT+AGG | 0.548110 | 6_1:+5927904 | None:intergenic |
| TTACCTTATAAATACTGGTA+CGG | 0.550507 | 6_1:-5928088 | Msa0871080:CDS |
| ATGCAACAGTCAACGGTTGA+AGG | 0.550989 | 6_1:+5928963 | None:intergenic |
| AAGTAGTAAGATTCCAGCAA+TGG | 0.553678 | 6_1:+5927837 | None:intergenic |
| ATTGTGGTGAAAGGGGCCAA+TGG | 0.566621 | 6_1:+5928878 | None:intergenic |
| TGCGGATATACTTGTTCAGA+GGG | 0.575503 | 6_1:-5928064 | Msa0871080:CDS |
| CTTGTAAATGCAACAGTCAA+CGG | 0.577935 | 6_1:+5928956 | None:intergenic |
| CAAGGTGTTTAAACTTGCGT+TGG | 0.589011 | 6_1:+5928791 | None:intergenic |
| ATTATACCATTGGCTAACCA+AGG | 0.597237 | 6_1:+5928612 | None:intergenic |
| TTTCGGACATGTTATCATGG+TGG | 0.599185 | 6_1:-5928648 | Msa0871080:CDS |
| GGCCAATGGAAACGACATTG+GGG | 0.603653 | 6_1:+5928892 | None:intergenic |
| ATGGAAGCAGCAGTTTGCCA+AGG | 0.604322 | 6_1:+5927856 | None:intergenic |
| ATGCGGATATACTTGTTCAG+AGG | 0.606196 | 6_1:-5928065 | Msa0871080:CDS |
| GATATCATCCACCAAGCGGA+AGG | 0.606930 | 6_1:+5929013 | None:intergenic |
| TCTAACAATTCAGTTGCACT+CGG | 0.634838 | 6_1:+5928303 | None:intergenic |
| CTTTGATATCATCCACCAAG+CGG | 0.652123 | 6_1:+5929009 | None:intergenic |
| TCATCCTGAACTCTTAATCG+AGG | 0.654081 | 6_1:+5928201 | None:intergenic |
| CAACAGTCAACGGTTGAAGG+TGG | 0.656871 | 6_1:+5928966 | None:intergenic |
| TTCATCATGAGAAAATGGTG+AGG | 0.671420 | 6_1:+5928716 | None:intergenic |
| AGAATCTATGTAGCTAACCA+AGG | 0.676168 | 6_1:+5928773 | None:intergenic |
| GCCAATGGAAACGACATTGG+GGG | 0.693624 | 6_1:+5928893 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTACAATAAATCAAAAT+TGG | - | chr6_1:5928358-5928377 | Msa0871080:CDS | 10.0% |
| !! | TTATTACAATAAATCAAAAT+TGG | - | chr6_1:5928358-5928377 | Msa0871080:CDS | 10.0% |
| !! | AAAAAGTTGAATTATAAAAC+AGG | + | chr6_1:5928141-5928160 | None:intergenic | 15.0% |
| !!! | GTTTTATAATTCAACTTTTT+CGG | - | chr6_1:5928141-5928160 | Msa0871080:CDS | 15.0% |
| !!! | ATTTTTTCAATAACGAAAAA+GGG | + | chr6_1:5928251-5928270 | None:intergenic | 15.0% |
| !!! | AATTTTTTCAATAACGAAAA+AGG | + | chr6_1:5928252-5928271 | None:intergenic | 15.0% |
| !! | AAAAAGTTGAATTATAAAAC+AGG | + | chr6_1:5928141-5928160 | None:intergenic | 15.0% |
| !!! | GTTTTATAATTCAACTTTTT+CGG | - | chr6_1:5928141-5928160 | Msa0871080:CDS | 15.0% |
| !!! | ATTTTTTCAATAACGAAAAA+GGG | + | chr6_1:5928251-5928270 | None:intergenic | 15.0% |
| !!! | AATTTTTTCAATAACGAAAA+AGG | + | chr6_1:5928252-5928271 | None:intergenic | 15.0% |
| !!! | CATTATTTTGTCTATTATGT+TGG | - | chr6_1:5929007-5929026 | Msa0871080:CDS | 20.0% |
| !!! | CATTATTTTGTCTATTATGT+TGG | - | chr6_1:5929007-5929026 | Msa0871080:CDS | 20.0% |
| ! | TAAGTCTTCTATTATACCAT+TGG | + | chr6_1:5928207-5928226 | None:intergenic | 25.0% |
| ! | TAGTGAGTTTAAGAAAAGAA+GGG | + | chr6_1:5928325-5928344 | None:intergenic | 25.0% |
| ! | TATACTAATATCACCCTTAT+CGG | + | chr6_1:5928387-5928406 | None:intergenic | 25.0% |
| ! | ATAAGGGTGATATTAGTATA+AGG | - | chr6_1:5928387-5928406 | Msa0871080:CDS | 25.0% |
| !! | ATGATACCGAAACTTTATTT+CGG | - | chr6_1:5928624-5928643 | Msa0871080:CDS | 25.0% |
| ! | CAGTAATATATGACTTATCA+GGG | + | chr6_1:5928679-5928698 | None:intergenic | 25.0% |
| ! | TCAGTAATATATGACTTATC+AGG | + | chr6_1:5928680-5928699 | None:intergenic | 25.0% |
| !!! | TACTGATTATGTTTCTGTTT+TGG | - | chr6_1:5928694-5928713 | Msa0871080:CDS | 25.0% |
| ! | TTGGATTACCTTATAAATAC+TGG | - | chr6_1:5928713-5928732 | Msa0871080:CDS | 25.0% |
| ! | TTACCTTATAAATACTGGTA+CGG | - | chr6_1:5928718-5928737 | Msa0871080:CDS | 25.0% |
| ! | TAAGTCTTCTATTATACCAT+TGG | + | chr6_1:5928207-5928226 | None:intergenic | 25.0% |
| ! | TAGTGAGTTTAAGAAAAGAA+GGG | + | chr6_1:5928325-5928344 | None:intergenic | 25.0% |
| ! | TATACTAATATCACCCTTAT+CGG | + | chr6_1:5928387-5928406 | None:intergenic | 25.0% |
| ! | ATAAGGGTGATATTAGTATA+AGG | - | chr6_1:5928387-5928406 | Msa0871080:CDS | 25.0% |
| !! | ATGATACCGAAACTTTATTT+CGG | - | chr6_1:5928624-5928643 | Msa0871080:CDS | 25.0% |
| ! | CAGTAATATATGACTTATCA+GGG | + | chr6_1:5928679-5928698 | None:intergenic | 25.0% |
| ! | TCAGTAATATATGACTTATC+AGG | + | chr6_1:5928680-5928699 | None:intergenic | 25.0% |
| !!! | TACTGATTATGTTTCTGTTT+TGG | - | chr6_1:5928694-5928713 | Msa0871080:CDS | 25.0% |
| ! | TTGGATTACCTTATAAATAC+TGG | - | chr6_1:5928713-5928732 | Msa0871080:CDS | 25.0% |
| ! | TTACCTTATAAATACTGGTA+CGG | - | chr6_1:5928718-5928737 | Msa0871080:CDS | 25.0% |
| ! | TTGAGTTTGCGAATTTTAGA+GGG | + | chr6_1:5927879-5927898 | None:intergenic | 30.0% |
| ! | GTTTCTGACTTTCCATATTT+TGG | + | chr6_1:5927965-5927984 | None:intergenic | 30.0% |
| ACAAGTTCATCATGAGAAAA+TGG | + | chr6_1:5928098-5928117 | None:intergenic | 30.0% | |
| GTAGTGAGTTTAAGAAAAGA+AGG | + | chr6_1:5928326-5928345 | None:intergenic | 30.0% | |
| ATCAAAATTGGATTCCGATA+AGG | - | chr6_1:5928370-5928389 | Msa0871080:CDS | 30.0% | |
| TCAAAATTGGATTCCGATAA+GGG | - | chr6_1:5928371-5928390 | Msa0871080:CDS | 30.0% | |
| ! | GTAAATGTTTACTTGACTTG+AGG | - | chr6_1:5928558-5928577 | Msa0871080:CDS | 30.0% |
| !! | TTTACTTGACTTGAGGTTTT+CGG | - | chr6_1:5928565-5928584 | Msa0871080:CDS | 30.0% |
| CAGATTCCGAAATAAAGTTT+CGG | + | chr6_1:5928633-5928652 | None:intergenic | 30.0% | |
| ! | GAAATACTGGAAAATTTGCT+TGG | - | chr6_1:5928764-5928783 | Msa0871080:CDS | 30.0% |
| !! | TCTGTAGCTAACTTGTTTAA+TGG | - | chr6_1:5928797-5928816 | Msa0871080:CDS | 30.0% |
| !! | AAGACTTGAATGCTTTTTGT+AGG | - | chr6_1:5928876-5928895 | Msa0871080:CDS | 30.0% |
| ! | TTGAGTTTGCGAATTTTAGA+GGG | + | chr6_1:5927879-5927898 | None:intergenic | 30.0% |
| ! | GTTTCTGACTTTCCATATTT+TGG | + | chr6_1:5927965-5927984 | None:intergenic | 30.0% |
| ACAAGTTCATCATGAGAAAA+TGG | + | chr6_1:5928098-5928117 | None:intergenic | 30.0% | |
| GTAGTGAGTTTAAGAAAAGA+AGG | + | chr6_1:5928326-5928345 | None:intergenic | 30.0% | |
| ATCAAAATTGGATTCCGATA+AGG | - | chr6_1:5928370-5928389 | Msa0871080:CDS | 30.0% | |
| TCAAAATTGGATTCCGATAA+GGG | - | chr6_1:5928371-5928390 | Msa0871080:CDS | 30.0% | |
| ! | GTAAATGTTTACTTGACTTG+AGG | - | chr6_1:5928558-5928577 | Msa0871080:CDS | 30.0% |
| !! | TTTACTTGACTTGAGGTTTT+CGG | - | chr6_1:5928565-5928584 | Msa0871080:CDS | 30.0% |
| CAGATTCCGAAATAAAGTTT+CGG | + | chr6_1:5928633-5928652 | None:intergenic | 30.0% | |
| ! | GAAATACTGGAAAATTTGCT+TGG | - | chr6_1:5928764-5928783 | Msa0871080:CDS | 30.0% |
| !! | TCTGTAGCTAACTTGTTTAA+TGG | - | chr6_1:5928797-5928816 | Msa0871080:CDS | 30.0% |
| !! | AAGACTTGAATGCTTTTTGT+AGG | - | chr6_1:5928876-5928895 | Msa0871080:CDS | 30.0% |
| CTTGTAAATGCAACAGTCAA+CGG | + | chr6_1:5927853-5927872 | None:intergenic | 35.0% | |
| !! | TGAGTTTGCGAATTTTAGAG+GGG | + | chr6_1:5927878-5927897 | None:intergenic | 35.0% |
| ! | GTTGAGTTTGCGAATTTTAG+AGG | + | chr6_1:5927880-5927899 | None:intergenic | 35.0% |
| !!! | ACTTTCCATATTTTGGAGCT+GGG | + | chr6_1:5927958-5927977 | None:intergenic | 35.0% |
| AGAATCTATGTAGCTAACCA+AGG | + | chr6_1:5928036-5928055 | None:intergenic | 35.0% | |
| ! | GAATAACAGCGTTTGAAATC+AGG | + | chr6_1:5928065-5928084 | None:intergenic | 35.0% |
| TTCATCATGAGAAAATGGTG+AGG | + | chr6_1:5928093-5928112 | None:intergenic | 35.0% | |
| !!! | CTTTTTCGGACATGTTATCA+TGG | - | chr6_1:5928155-5928174 | Msa0871080:CDS | 35.0% |
| TTGGCTAACCAAGGTTTAAA+GGG | + | chr6_1:5928188-5928207 | None:intergenic | 35.0% | |
| ATTGGCTAACCAAGGTTTAA+AGG | + | chr6_1:5928189-5928208 | None:intergenic | 35.0% | |
| ! | TTTAAACCTTGGTTAGCCAA+TGG | - | chr6_1:5928188-5928207 | Msa0871080:CDS | 35.0% |
| ! | ATTATACCATTGGCTAACCA+AGG | + | chr6_1:5928197-5928216 | None:intergenic | 35.0% |
| CTAATAGCCTGACTTTCAAT+AGG | + | chr6_1:5928452-5928471 | None:intergenic | 35.0% | |
| CTATTGAAAGTCAGGCTATT+AGG | - | chr6_1:5928450-5928469 | Msa0871080:CDS | 35.0% | |
| TCTAACAATTCAGTTGCACT+CGG | + | chr6_1:5928506-5928525 | None:intergenic | 35.0% | |
| AATTGTTAGAAGCTGGAGTT+AGG | - | chr6_1:5928516-5928535 | Msa0871080:CDS | 35.0% | |
| !! | TTACTTGACTTGAGGTTTTC+GGG | - | chr6_1:5928566-5928585 | Msa0871080:CDS | 35.0% |
| AATTCCTCGATTAAGAGTTC+AGG | - | chr6_1:5928601-5928620 | Msa0871080:CDS | 35.0% | |
| ! | CGAAACTTTATTTCGGAATC+TGG | - | chr6_1:5928631-5928650 | Msa0871080:CDS | 35.0% |
| CATCCGTACCAGTATTTATA+AGG | + | chr6_1:5928724-5928743 | None:intergenic | 35.0% | |
| TATAAATACTGGTACGGATG+CGG | - | chr6_1:5928724-5928743 | Msa0871080:CDS | 35.0% | |
| !! | ATGCTTTTTGTAGGAATCCT+AGG | - | chr6_1:5928885-5928904 | Msa0871080:CDS | 35.0% |
| GTGATTATTGCAAAACTCCT+TGG | - | chr6_1:5928933-5928952 | Msa0871080:CDS | 35.0% | |
| AAGTAGTAAGATTCCAGCAA+TGG | + | chr6_1:5928972-5928991 | None:intergenic | 35.0% | |
| CTTGTAAATGCAACAGTCAA+CGG | + | chr6_1:5927853-5927872 | None:intergenic | 35.0% | |
| !! | TGAGTTTGCGAATTTTAGAG+GGG | + | chr6_1:5927878-5927897 | None:intergenic | 35.0% |
| ! | GTTGAGTTTGCGAATTTTAG+AGG | + | chr6_1:5927880-5927899 | None:intergenic | 35.0% |
| !!! | ACTTTCCATATTTTGGAGCT+GGG | + | chr6_1:5927958-5927977 | None:intergenic | 35.0% |
| AGAATCTATGTAGCTAACCA+AGG | + | chr6_1:5928036-5928055 | None:intergenic | 35.0% | |
| ! | GAATAACAGCGTTTGAAATC+AGG | + | chr6_1:5928065-5928084 | None:intergenic | 35.0% |
| TTCATCATGAGAAAATGGTG+AGG | + | chr6_1:5928093-5928112 | None:intergenic | 35.0% | |
| !!! | CTTTTTCGGACATGTTATCA+TGG | - | chr6_1:5928155-5928174 | Msa0871080:CDS | 35.0% |
| TTGGCTAACCAAGGTTTAAA+GGG | + | chr6_1:5928188-5928207 | None:intergenic | 35.0% | |
| ATTGGCTAACCAAGGTTTAA+AGG | + | chr6_1:5928189-5928208 | None:intergenic | 35.0% | |
| ! | TTTAAACCTTGGTTAGCCAA+TGG | - | chr6_1:5928188-5928207 | Msa0871080:CDS | 35.0% |
| ! | ATTATACCATTGGCTAACCA+AGG | + | chr6_1:5928197-5928216 | None:intergenic | 35.0% |
| CTAATAGCCTGACTTTCAAT+AGG | + | chr6_1:5928452-5928471 | None:intergenic | 35.0% | |
| CTATTGAAAGTCAGGCTATT+AGG | - | chr6_1:5928450-5928469 | Msa0871080:CDS | 35.0% | |
| TCTAACAATTCAGTTGCACT+CGG | + | chr6_1:5928506-5928525 | None:intergenic | 35.0% | |
| AATTGTTAGAAGCTGGAGTT+AGG | - | chr6_1:5928516-5928535 | Msa0871080:CDS | 35.0% | |
| !! | TTACTTGACTTGAGGTTTTC+GGG | - | chr6_1:5928566-5928585 | Msa0871080:CDS | 35.0% |
| AATTCCTCGATTAAGAGTTC+AGG | - | chr6_1:5928601-5928620 | Msa0871080:CDS | 35.0% | |
| ! | CGAAACTTTATTTCGGAATC+TGG | - | chr6_1:5928631-5928650 | Msa0871080:CDS | 35.0% |
| CATCCGTACCAGTATTTATA+AGG | + | chr6_1:5928724-5928743 | None:intergenic | 35.0% | |
| TATAAATACTGGTACGGATG+CGG | - | chr6_1:5928724-5928743 | Msa0871080:CDS | 35.0% | |
| !! | ATGCTTTTTGTAGGAATCCT+AGG | - | chr6_1:5928885-5928904 | Msa0871080:CDS | 35.0% |
| GTGATTATTGCAAAACTCCT+TGG | - | chr6_1:5928933-5928952 | Msa0871080:CDS | 35.0% | |
| AAGTAGTAAGATTCCAGCAA+TGG | + | chr6_1:5928972-5928991 | None:intergenic | 35.0% | |
| CTTTGATATCATCCACCAAG+CGG | + | chr6_1:5927800-5927819 | None:intergenic | 40.0% | |
| ! | CGTTGACTGTTGCATTTACA+AGG | - | chr6_1:5927851-5927870 | Msa0871080:CDS | 40.0% |
| !!! | TTTCCATATTTTGGAGCTGG+GGG | + | chr6_1:5927956-5927975 | None:intergenic | 40.0% |
| !!! | CTTTCCATATTTTGGAGCTG+GGG | + | chr6_1:5927957-5927976 | None:intergenic | 40.0% |
| !!! | GACTTTCCATATTTTGGAGC+TGG | + | chr6_1:5927959-5927978 | None:intergenic | 40.0% |
| !! | TTAAACTTGCGTTGGTTCGT+TGG | + | chr6_1:5928010-5928029 | None:intergenic | 40.0% |
| ! | CAAGGTGTTTAAACTTGCGT+TGG | + | chr6_1:5928018-5928037 | None:intergenic | 40.0% |
| CAACGCAAGTTTAAACACCT+TGG | - | chr6_1:5928016-5928035 | Msa0871080:CDS | 40.0% | |
| TTTCGGACATGTTATCATGG+TGG | - | chr6_1:5928158-5928177 | Msa0871080:CDS | 40.0% | |
| TTCGGACATGTTATCATGGT+GGG | - | chr6_1:5928159-5928178 | Msa0871080:CDS | 40.0% | |
| AAAGAAGGGATCGTAGTGTT+AGG | + | chr6_1:5928311-5928330 | None:intergenic | 40.0% | |
| GCAACATCCTATTGAAAGTC+AGG | - | chr6_1:5928442-5928461 | Msa0871080:CDS | 40.0% | |
| GCAACTGAATTGTTAGAAGC+TGG | - | chr6_1:5928509-5928528 | Msa0871080:CDS | 40.0% | |
| TCATCCTGAACTCTTAATCG+AGG | + | chr6_1:5928608-5928627 | None:intergenic | 40.0% | |
| ATTTCGGAATCTGGTTGCTT+TGG | - | chr6_1:5928640-5928659 | Msa0871080:CDS | 40.0% | |
| ATGCGGATATACTTGTTCAG+AGG | - | chr6_1:5928741-5928760 | Msa0871080:CDS | 40.0% | |
| TGCGGATATACTTGTTCAGA+GGG | - | chr6_1:5928742-5928761 | Msa0871080:CDS | 40.0% | |
| ACTTGTTCAGAGGGAAATAC+TGG | - | chr6_1:5928751-5928770 | Msa0871080:CDS | 40.0% | |
| ! | GAATCCTAGGCATAAGTTGA+AGG | - | chr6_1:5928898-5928917 | Msa0871080:CDS | 40.0% |
| CTTTGATATCATCCACCAAG+CGG | + | chr6_1:5927800-5927819 | None:intergenic | 40.0% | |
| ! | CGTTGACTGTTGCATTTACA+AGG | - | chr6_1:5927851-5927870 | Msa0871080:CDS | 40.0% |
| !!! | TTTCCATATTTTGGAGCTGG+GGG | + | chr6_1:5927956-5927975 | None:intergenic | 40.0% |
| !!! | CTTTCCATATTTTGGAGCTG+GGG | + | chr6_1:5927957-5927976 | None:intergenic | 40.0% |
| !!! | GACTTTCCATATTTTGGAGC+TGG | + | chr6_1:5927959-5927978 | None:intergenic | 40.0% |
| !! | TTAAACTTGCGTTGGTTCGT+TGG | + | chr6_1:5928010-5928029 | None:intergenic | 40.0% |
| ! | CAAGGTGTTTAAACTTGCGT+TGG | + | chr6_1:5928018-5928037 | None:intergenic | 40.0% |
| CAACGCAAGTTTAAACACCT+TGG | - | chr6_1:5928016-5928035 | Msa0871080:CDS | 40.0% | |
| TTTCGGACATGTTATCATGG+TGG | - | chr6_1:5928158-5928177 | Msa0871080:CDS | 40.0% | |
| TTCGGACATGTTATCATGGT+GGG | - | chr6_1:5928159-5928178 | Msa0871080:CDS | 40.0% | |
| AAAGAAGGGATCGTAGTGTT+AGG | + | chr6_1:5928311-5928330 | None:intergenic | 40.0% | |
| GCAACATCCTATTGAAAGTC+AGG | - | chr6_1:5928442-5928461 | Msa0871080:CDS | 40.0% | |
| GCAACTGAATTGTTAGAAGC+TGG | - | chr6_1:5928509-5928528 | Msa0871080:CDS | 40.0% | |
| TCATCCTGAACTCTTAATCG+AGG | + | chr6_1:5928608-5928627 | None:intergenic | 40.0% | |
| ATTTCGGAATCTGGTTGCTT+TGG | - | chr6_1:5928640-5928659 | Msa0871080:CDS | 40.0% | |
| ATGCGGATATACTTGTTCAG+AGG | - | chr6_1:5928741-5928760 | Msa0871080:CDS | 40.0% | |
| TGCGGATATACTTGTTCAGA+GGG | - | chr6_1:5928742-5928761 | Msa0871080:CDS | 40.0% | |
| ACTTGTTCAGAGGGAAATAC+TGG | - | chr6_1:5928751-5928770 | Msa0871080:CDS | 40.0% | |
| ! | GAATCCTAGGCATAAGTTGA+AGG | - | chr6_1:5928898-5928917 | Msa0871080:CDS | 40.0% |
| ATGCAACAGTCAACGGTTGA+AGG | + | chr6_1:5927846-5927865 | None:intergenic | 45.0% | |
| GTGGGTTTCCCTTTAAACCT+TGG | - | chr6_1:5928177-5928196 | Msa0871080:CDS | 45.0% | |
| GGCACTTCACTGATCTGATT+AGG | - | chr6_1:5928408-5928427 | Msa0871080:CDS | 45.0% | |
| ! | ATAAGTTGAAGGCTGCTCTC+AGG | - | chr6_1:5928909-5928928 | Msa0871080:CDS | 45.0% |
| ATGCAACAGTCAACGGTTGA+AGG | + | chr6_1:5927846-5927865 | None:intergenic | 45.0% | |
| GTGGGTTTCCCTTTAAACCT+TGG | - | chr6_1:5928177-5928196 | Msa0871080:CDS | 45.0% | |
| GGCACTTCACTGATCTGATT+AGG | - | chr6_1:5928408-5928427 | Msa0871080:CDS | 45.0% | |
| ! | ATAAGTTGAAGGCTGCTCTC+AGG | - | chr6_1:5928909-5928928 | Msa0871080:CDS | 45.0% |
| GATATCATCCACCAAGCGGA+AGG | + | chr6_1:5927796-5927815 | None:intergenic | 50.0% | |
| CAACAGTCAACGGTTGAAGG+TGG | + | chr6_1:5927843-5927862 | None:intergenic | 50.0% | |
| ! | ACCCCCAATGTCGTTTCCAT+TGG | - | chr6_1:5927912-5927931 | Msa0871080:CDS | 50.0% |
| GCCAATGGAAACGACATTGG+GGG | + | chr6_1:5927916-5927935 | None:intergenic | 50.0% | |
| GGCCAATGGAAACGACATTG+GGG | + | chr6_1:5927917-5927936 | None:intergenic | 50.0% | |
| GGGCCAATGGAAACGACATT+GGG | + | chr6_1:5927918-5927937 | None:intergenic | 50.0% | |
| ATTGTGGTGAAAGGGGCCAA+TGG | + | chr6_1:5927931-5927950 | None:intergenic | 50.0% | |
| TGGGGGTGATTGTGGTGAAA+GGG | + | chr6_1:5927939-5927958 | None:intergenic | 50.0% | |
| TCACCCCCAGCTCCAAAATA+TGG | - | chr6_1:5927950-5927969 | Msa0871080:CDS | 50.0% | |
| TAGGCACGAGTTCAACGAAC+TGG | - | chr6_1:5928469-5928488 | Msa0871080:CDS | 50.0% | |
| !! | CTTGACTTGAGGTTTTCGGG+AGG | - | chr6_1:5928569-5928588 | Msa0871080:CDS | 50.0% |
| GCAGCCTTCAACTTATGCCT+AGG | + | chr6_1:5928905-5928924 | None:intergenic | 50.0% | |
| ATGGAAGCAGCAGTTTGCCA+AGG | + | chr6_1:5928953-5928972 | None:intergenic | 50.0% | |
| ! | CAAACTGCTGCTTCCATTGC+TGG | - | chr6_1:5928956-5928975 | Msa0871080:CDS | 50.0% |
| GATATCATCCACCAAGCGGA+AGG | + | chr6_1:5927796-5927815 | None:intergenic | 50.0% | |
| CAACAGTCAACGGTTGAAGG+TGG | + | chr6_1:5927843-5927862 | None:intergenic | 50.0% | |
| ! | ACCCCCAATGTCGTTTCCAT+TGG | - | chr6_1:5927912-5927931 | Msa0871080:CDS | 50.0% |
| GCCAATGGAAACGACATTGG+GGG | + | chr6_1:5927916-5927935 | None:intergenic | 50.0% | |
| GGCCAATGGAAACGACATTG+GGG | + | chr6_1:5927917-5927936 | None:intergenic | 50.0% | |
| GGGCCAATGGAAACGACATT+GGG | + | chr6_1:5927918-5927937 | None:intergenic | 50.0% | |
| ATTGTGGTGAAAGGGGCCAA+TGG | + | chr6_1:5927931-5927950 | None:intergenic | 50.0% | |
| TGGGGGTGATTGTGGTGAAA+GGG | + | chr6_1:5927939-5927958 | None:intergenic | 50.0% | |
| TCACCCCCAGCTCCAAAATA+TGG | - | chr6_1:5927950-5927969 | Msa0871080:CDS | 50.0% | |
| TAGGCACGAGTTCAACGAAC+TGG | - | chr6_1:5928469-5928488 | Msa0871080:CDS | 50.0% | |
| !! | CTTGACTTGAGGTTTTCGGG+AGG | - | chr6_1:5928569-5928588 | Msa0871080:CDS | 50.0% |
| GCAGCCTTCAACTTATGCCT+AGG | + | chr6_1:5928905-5928924 | None:intergenic | 50.0% | |
| ATGGAAGCAGCAGTTTGCCA+AGG | + | chr6_1:5928953-5928972 | None:intergenic | 50.0% | |
| ! | CAAACTGCTGCTTCCATTGC+TGG | - | chr6_1:5928956-5928975 | Msa0871080:CDS | 50.0% |
| GGGGCCAATGGAAACGACAT+TGG | + | chr6_1:5927919-5927938 | None:intergenic | 55.0% | |
| GGGGGTGATTGTGGTGAAAG+GGG | + | chr6_1:5927938-5927957 | None:intergenic | 55.0% | |
| CTGGGGGTGATTGTGGTGAA+AGG | + | chr6_1:5927940-5927959 | None:intergenic | 55.0% | |
| ! | TTTGGAGCTGGGGGTGATTG+TGG | + | chr6_1:5927947-5927966 | None:intergenic | 55.0% |
| GGGGCCAATGGAAACGACAT+TGG | + | chr6_1:5927919-5927938 | None:intergenic | 55.0% | |
| GGGGGTGATTGTGGTGAAAG+GGG | + | chr6_1:5927938-5927957 | None:intergenic | 55.0% | |
| CTGGGGGTGATTGTGGTGAA+AGG | + | chr6_1:5927940-5927959 | None:intergenic | 55.0% | |
| ! | TTTGGAGCTGGGGGTGATTG+TGG | + | chr6_1:5927947-5927966 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 5927786 | 5929042 | 5927786 | ID=Msa0871080;Name=Msa0871080 |
| chr6_1 | mRNA | 5927786 | 5929042 | 5927786 | ID=Msa0871080-mRNA-1;Parent=Msa0871080;Name=Msa0871080-mRNA-1;_AED=0.06;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|418 |
| chr6_1 | exon | 5927786 | 5929042 | 5927786 | ID=Msa0871080-mRNA-1:exon:1805;Parent=Msa0871080-mRNA-1 |
| chr6_1 | CDS | 5927786 | 5929042 | 5927786 | ID=Msa0871080-mRNA-1:cds;Parent=Msa0871080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
