AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386750 MtrunA17_Chr2g0290351 91.571 700 15 2 1 656 1 700 0.0 1305
Msa1386750 MtrunA17_Chr3g0101951 42.077 549 247 14 7 499 14 547 3.14e-128 393
Msa1386750 MtrunA17_Chr5g0423001 29.310 406 178 11 142 501 58 400 3.83e-39 152
Msa1386750 MtrunA17_Chr2g0293961 34.507 142 83 4 356 491 250 387 8.16e-12 67.8
Msa1386750 MtrunA17_Chr5g0423021 33.333 78 48 1 10 87 23 96 1.70e-11 61.6
Msa1386750 MtrunA17_Chr1g0192931 29.927 137 92 3 356 491 51 184 4.59e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386750 AT5G55600.2 38.309 556 268 10 5 503 3 540 9.02e-115 358
Msa1386750 AT5G55600.1 38.309 556 268 10 5 503 3 540 9.02e-115 358
Msa1386750 AT5G55600.3 38.309 556 268 10 5 503 3 540 9.02e-115 358
Msa1386750 AT1G68580.2 29.340 576 340 14 10 538 10 565 1.15e-64 225
Msa1386750 AT1G68580.4 30.189 530 310 13 10 499 10 519 8.25e-63 218
Msa1386750 AT1G68580.3 32.783 424 247 8 142 538 57 469 5.05e-61 213
Msa1386750 AT1G68580.5 32.783 424 247 8 142 538 107 519 1.59e-60 213
Msa1386750 AT1G68580.1 34.392 378 217 7 142 499 57 423 1.58e-59 206

Find 212 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGACAGTCCGCCTTTCTTT+TGG 0.168579 tig0020858:+118235 None:intergenic
TTCTTGCATTTCAAATTATC+AGG 0.174104 tig0020858:-115930 Msa1386750:three_prime_UTR
ACCTTATCATTGACCTTAAA+AGG 0.202223 tig0020858:+117987 None:intergenic
TCATTCATTTGTGTATATTA+TGG 0.207594 tig0020858:-118639 Msa1386750:CDS
TAACATGTGGGTTAATATAT+TGG 0.208099 tig0020858:-116897 Msa1386750:CDS
GAATATATGGTAAAGGTAAA+TGG 0.210997 tig0020858:-116388 Msa1386750:three_prime_UTR
CGCCCTCCTGAATCTGTTAA+AGG 0.213743 tig0020858:-117343 Msa1386750:CDS
CTACTAACGTTGTTTATAAA+TGG 0.214973 tig0020858:-121525 Msa1386750:CDS
CATCTGGGTCGTTGTGGTTT+TGG 0.216394 tig0020858:-121932 Msa1386750:five_prime_UTR
AGTAACCAGCCTATACTTTC+TGG 0.267064 tig0020858:-118278 Msa1386750:CDS
GTACAACCTTTAACAGATTC+AGG 0.267647 tig0020858:+117337 None:intergenic
GCTCCTGCTGCATCAAGTTT+TGG 0.267891 tig0020858:+116425 None:intergenic
TGGTTCTATACCAGTTTATC+AGG 0.278923 tig0020858:+119251 None:intergenic
CTGAGATCCATGTATGTTCT+AGG 0.288673 tig0020858:-118355 Msa1386750:CDS
AGAGGACAGCGAGGAGAATT+TGG 0.289739 tig0020858:-116477 Msa1386750:CDS
TTCCTAAACCAACCCTAAAT+TGG 0.291254 tig0020858:+121845 None:intergenic
TTCCCACCATCTTCAAATTT+CGG 0.300490 tig0020858:+118215 None:intergenic
TCTGGTTTGGAAGAACTTAA+TGG 0.303372 tig0020858:-116707 Msa1386750:CDS
AGTAGCAAAACCTGACAAAC+TGG 0.320545 tig0020858:-117401 Msa1386750:CDS
CACCAATTTAGGGTTGGTTT+AGG 0.328851 tig0020858:-121847 Msa1386750:five_prime_UTR
TAATAATGAAATGAAACTTC+AGG 0.341011 tig0020858:-116322 Msa1386750:three_prime_UTR
ACTTCTATTCCTCTTATTGC+TGG 0.341426 tig0020858:+118166 None:intergenic
AAAGGAGGGTTTGAAGAAAA+TGG 0.342107 tig0020858:+122235 Msa1386760:CDS
TAGCTTGAAACTTGGGGCGG+GGG 0.346760 tig0020858:+116837 None:intergenic
TTAGTGTATAGCTTATGTTT+TGG 0.347011 tig0020858:-116242 Msa1386750:three_prime_UTR
AGCTTGAAACTTGGGGCGGG+GGG 0.355476 tig0020858:+116838 None:intergenic
TTTCATCACACCTAATGTTC+AGG 0.361881 tig0020858:-118471 Msa1386750:CDS
TCCACAACATAAACATCATA+TGG 0.362397 tig0020858:-122136 Msa1386750:five_prime_UTR
ATCGACTCTGGTGGCTTTGA+TGG 0.362743 tig0020858:-116623 Msa1386750:CDS
AGTTTCAGACTCGGGTATTT+CGG 0.362958 tig0020858:+118062 None:intergenic
ATGCCTGGTGTGGGGATGGA+TGG 0.370592 tig0020858:-117291 Msa1386750:CDS
GATTCGGTGCTAGCTGTTGT+GGG 0.371308 tig0020858:-121613 Msa1386750:CDS
TGTTGACTGGCTCAACCATT+TGG 0.374513 tig0020858:-121485 Msa1386750:CDS
ATACAGGTTACATGAATATA+TGG 0.374671 tig0020858:-116401 Msa1386750:exon
AAACAACAAAACAAGGATTA+AGG 0.374788 tig0020858:+122095 None:intergenic
TTCAGCAAATGCTGCAGGAC+TGG 0.376226 tig0020858:-119324 Msa1386750:CDS
AAAGGTTGTACTTTCGAGAT+TGG 0.378680 tig0020858:-117325 Msa1386750:CDS
AACATGTGGGTTAATATATT+GGG 0.382749 tig0020858:-116896 Msa1386750:CDS
ATATCTGAACTTTGAATGTT+CGG 0.390684 tig0020858:+119127 None:intergenic
CACCGCATACCCAGTTTGTC+AGG 0.392151 tig0020858:+117391 None:intergenic
TCTCAAGATAGTGGCATTAG+AGG 0.393901 tig0020858:-117954 Msa1386750:CDS
AATATATGGTAAAGGTAAAT+GGG 0.396001 tig0020858:-116387 Msa1386750:three_prime_UTR
GCACTGATCACCTGAACATT+AGG 0.397724 tig0020858:+118461 None:intergenic
CAGCTGTGGATGCCTGGTGT+GGG 0.404079 tig0020858:-117300 Msa1386750:CDS
ACCTGTCAGGTTTATTCGCC+TGG 0.412098 tig0020858:-117226 Msa1386750:intron
CCTGGTGTGGGGATGGATGG+TGG 0.416330 tig0020858:-117288 Msa1386750:CDS
GTCTTGATATTTAGTTCATG+TGG 0.416492 tig0020858:-116171 Msa1386750:three_prime_UTR
GGCTCAACCATTTGGTTTCG+AGG 0.417021 tig0020858:-121477 Msa1386750:CDS
CTAGAATCAAATGGGGCAAA+AGG 0.421754 tig0020858:+121978 None:intergenic
TTAGGAGTCAGAACTGTTGC+AGG 0.423318 tig0020858:+118422 None:intergenic
TTGAAGGATTTAAGGATGTC+AGG 0.423670 tig0020858:-121736 Msa1386750:exon
GTAGCTGAAAAGGGTTCTTC+TGG 0.423827 tig0020858:-118128 Msa1386750:CDS
GGATTCGGTGCTAGCTGTTG+TGG 0.425224 tig0020858:-121614 Msa1386750:CDS
TTCTGAAAGTGGAACCTGTC+AGG 0.427690 tig0020858:-117239 Msa1386750:CDS
GAACCCCACTTCACAAAACC+TGG 0.428520 tig0020858:-122170 Msa1386750:five_prime_UTR
ACATACAACCATATATGAAT+AGG 0.430735 tig0020858:+115979 None:intergenic
TTGTATTTCTCGTAATGCTT+AGG 0.431456 tig0020858:+118404 None:intergenic
GTGGATGCCTGGTGTGGGGA+TGG 0.431806 tig0020858:-117295 Msa1386750:CDS
TATGTGCACCTATTCATATA+TGG 0.434674 tig0020858:-115987 Msa1386750:three_prime_UTR
GTCAAGAAATACAATGGGTA+AGG 0.435122 tig0020858:-118033 Msa1386750:CDS
GGGTATTTCGGTACACCATT+TGG 0.436068 tig0020858:+118074 None:intergenic
GGAGTACTCGGTAGCTGAAA+AGG 0.436611 tig0020858:-118138 Msa1386750:CDS
AAATCACTATCTCGGTTACT+TGG 0.437572 tig0020858:-118606 Msa1386750:CDS
TCCTTACACCAATTTAGGGT+TGG 0.438520 tig0020858:-121853 Msa1386750:five_prime_UTR
GCTAATTCTGCAGTGGTCAA+TGG 0.443108 tig0020858:-116818 Msa1386750:CDS
CAAAGTACAAACTTTACCCT+TGG 0.444087 tig0020858:+116081 None:intergenic
TTAAAAGGCAGCTCAGGCTT+AGG 0.446133 tig0020858:+118002 None:intergenic
TCAGCAAATGCTGCAGGACT+GGG 0.449382 tig0020858:-119323 Msa1386750:CDS
GCTTGAAACTTGGGGCGGGG+GGG 0.450862 tig0020858:+116839 None:intergenic
CCCTATTCTTCCCAAAAGAA+AGG 0.451024 tig0020858:-118246 Msa1386750:CDS
ATCAAACAAAATTACCATTA+CGG 0.457769 tig0020858:+121443 None:intergenic
TTTGCTGTTGGTGGCGGTGG+TGG 0.458052 tig0020858:-121762 Msa1386750:five_prime_UTR
TCACTCAAGATGATCCTTTG+AGG 0.458314 tig0020858:-118190 Msa1386750:CDS
CCCTCATGAAGATCAAGCTC+TGG 0.461208 tig0020858:+118500 None:intergenic
TTCTCTGACAGGTACACTGC+TGG 0.462184 tig0020858:-119351 Msa1386750:intron
TGATGCAGCAGGAGCAATAC+AGG 0.466863 tig0020858:-116417 Msa1386750:CDS
ACCTTCGGATTTCCCAAGAC+TGG 0.467234 tig0020858:-116925 Msa1386750:CDS
TTATAAATGGAGGGCAAGGA+GGG 0.470720 tig0020858:-121512 Msa1386750:CDS
TTAGCTTGAAACTTGGGGCG+GGG 0.472188 tig0020858:+116836 None:intergenic
GCTGTTGATGCTTCTGAAAG+TGG 0.475625 tig0020858:-117250 Msa1386750:CDS
CATGTTATCAATCCAGTCTT+GGG 0.476256 tig0020858:+116913 None:intergenic
GCAGCTGTGGATGCCTGGTG+TGG 0.478486 tig0020858:-117301 Msa1386750:CDS
ACATGTTATCAATCCAGTCT+TGG 0.478789 tig0020858:+116912 None:intergenic
TGCAGAATTAGCTTGAAACT+TGG 0.478885 tig0020858:+116829 None:intergenic
AAAGACAAGGATTGTAACTC+TGG 0.481296 tig0020858:-116563 Msa1386750:CDS
TTGGAGCAGCTGTGGATGCC+TGG 0.482162 tig0020858:-117306 Msa1386750:CDS
ACCAACCCTAAATTGGTGTA+AGG 0.482492 tig0020858:+121852 None:intergenic
GCAGAATTAGCTTGAAACTT+GGG 0.486363 tig0020858:+116830 None:intergenic
GCAACTTCAACTTTAGCGAT+TGG 0.490850 tig0020858:+116752 None:intergenic
CATTTCAAATTATCAGGGAT+CGG 0.490995 tig0020858:-115924 Msa1386750:three_prime_UTR
TAAGCTGCCTAGAACATACA+TGG 0.491541 tig0020858:+118348 None:intergenic
TTGACCTTAAAAGGCAGCTC+AGG 0.493307 tig0020858:+117996 None:intergenic
AATAATGAAATGAAACTTCA+GGG 0.497134 tig0020858:-116321 Msa1386750:three_prime_UTR
ACGGTGGTTTCACCGTGGTC+AGG 0.498848 tig0020858:-118540 Msa1386750:CDS
GATGTCCTCGTCTTCATGAA+TGG 0.501392 tig0020858:+116643 None:intergenic
CTTTGAGGTCCAGCAATAAG+AGG 0.501940 tig0020858:-118175 Msa1386750:CDS
AGGAATCTATCGCACCGTAA+TGG 0.504905 tig0020858:-121457 Msa1386750:intron
CTCAGCTTAGTAAGTGCAAA+GGG 0.507557 tig0020858:+118308 None:intergenic
CTGGTGTGGGGATGGATGGT+GGG 0.509149 tig0020858:-117287 Msa1386750:CDS
TTTAAGGATGTCAGGTGATG+AGG 0.510759 tig0020858:-121728 Msa1386750:exon
AATGCAAGAATCGTGGCATA+TGG 0.516188 tig0020858:+115943 None:intergenic
AAAGTACAAACTTTACCCTT+GGG 0.516308 tig0020858:+116082 None:intergenic
CTAACGTTGTTTATAAATGG+AGG 0.516838 tig0020858:-121522 Msa1386750:CDS
TAAATGGAGGGCAAGGAGGG+AGG 0.518145 tig0020858:-121509 Msa1386750:CDS
TGGCCGAAAAGAGAGACCTT+CGG 0.518772 tig0020858:-116940 Msa1386750:CDS
GATGATTCAGCAAATGCTGC+AGG 0.521797 tig0020858:-119329 Msa1386750:CDS
ACAAATAAATAAACAACGAT+GGG 0.522252 tig0020858:+121819 None:intergenic
GCTTGATCTTCATGAGGGTG+AGG 0.522274 tig0020858:-118495 Msa1386750:CDS
ATCGAGGAGTTTAGCTCCCA+AGG 0.524438 tig0020858:-116098 Msa1386750:three_prime_UTR
GAGTTTCTCTCTCAAGATAG+TGG 0.524873 tig0020858:-117963 Msa1386750:CDS
ATCAGTGCTGAGTGCATCAA+TGG 0.524900 tig0020858:-118446 Msa1386750:CDS
CAAGGAGGGAGGTTGTTGAC+TGG 0.527134 tig0020858:-121498 Msa1386750:CDS
CAATTCAAACCAGAAAGTAT+AGG 0.528562 tig0020858:+118269 None:intergenic
AACAAATAAATAAACAACGA+TGG 0.532291 tig0020858:+121818 None:intergenic
TGTGTATATTATGGCTGAAG+AGG 0.534012 tig0020858:-118630 Msa1386750:CDS
ACTTCAACTTTAGCGATTGG+TGG 0.534261 tig0020858:+116755 None:intergenic
TCTTGATATTTAGTTCATGT+GGG 0.535617 tig0020858:-116170 Msa1386750:three_prime_UTR
TAAAGTTGAAGTTGCTCCAA+AGG 0.536046 tig0020858:-116744 Msa1386750:CDS
TCTTGCATTTCAAATTATCA+GGG 0.537761 tig0020858:-115929 Msa1386750:three_prime_UTR
GTTACATGAATATATGGTAA+AGG 0.539182 tig0020858:-116395 Msa1386750:exon
ATAGATTCCTCGAAACCAAA+TGG 0.540101 tig0020858:+121470 None:intergenic
GGTTAATATATTGGGAAAGC+CGG 0.540636 tig0020858:-116888 Msa1386750:CDS
CTTATGAATGAGATGCCAAA+TGG 0.540972 tig0020858:-118089 Msa1386750:CDS
CCACCATCCATCCCCACACC+AGG 0.544987 tig0020858:+117288 None:intergenic
ATATAGTACTTCATGATCAA+AGG 0.545394 tig0020858:+116039 None:intergenic
GTATGAAGAGAATGACTTTG+TGG 0.547437 tig0020858:-116682 Msa1386750:CDS
AACCCCACTTCACAAAACCT+GGG 0.547741 tig0020858:-122169 Msa1386750:five_prime_UTR
AAACTGTCAAGAAATACAAT+GGG 0.548990 tig0020858:-118038 Msa1386750:CDS
ATTAGCTTGAAACTTGGGGC+GGG 0.549751 tig0020858:+116835 None:intergenic
TGAAGTGGGGTTCAAGGCAA+TGG 0.550570 tig0020858:+122180 Msa1386760:CDS
GAGTACTCGGTAGCTGAAAA+GGG 0.550745 tig0020858:-118137 Msa1386750:CDS
GAAGACGAGGACATCGACTC+TGG 0.550759 tig0020858:-116635 Msa1386750:CDS
TAGAAGTTCTGTGGAGTACT+CGG 0.551129 tig0020858:-118150 Msa1386750:CDS
CTCTTATTGCTGGACCTCAA+AGG 0.552719 tig0020858:+118176 None:intergenic
TAGAATCAAATGGGGCAAAA+GGG 0.555346 tig0020858:+121979 None:intergenic
GAAGAGGAAAATCACTATCT+CGG 0.555716 tig0020858:-118614 Msa1386750:CDS
TTTCGAGATTGGAGCAGCTG+TGG 0.556598 tig0020858:-117314 Msa1386750:CDS
AAAACTGTCAAGAAATACAA+TGG 0.558350 tig0020858:-118039 Msa1386750:CDS
CGAGGAGAATTTGGTGATGG+AGG 0.561975 tig0020858:-116468 Msa1386750:CDS
GATGCTGATGCTGACAACAC+TGG 0.563948 tig0020858:-116500 Msa1386750:CDS
TTTATAAATGGAGGGCAAGG+AGG 0.565218 tig0020858:-121513 Msa1386750:CDS
AGCTGTGGATGCCTGGTGTG+GGG 0.568395 tig0020858:-117299 Msa1386750:CDS
GACTGTCCGAAATTTGAAGA+TGG 0.568426 tig0020858:-118221 Msa1386750:CDS
GAACCAAAACTTGATGCAGC+AGG 0.570105 tig0020858:-116428 Msa1386750:CDS
TCATGAATGGCATGGAGTGG+TGG 0.570434 tig0020858:+116656 None:intergenic
ACGCAGTTTCAAGTTTCAGT+GGG 0.572265 tig0020858:+116121 None:intergenic
TGTCCGAAATTTGAAGATGG+TGG 0.572463 tig0020858:-118218 Msa1386750:CDS
TCAAACCAGAAAGTATAGGC+TGG 0.573089 tig0020858:+118273 None:intergenic
GTCCGAAATTTGAAGATGGT+GGG 0.574514 tig0020858:-118217 Msa1386750:CDS
TAACGTTGTTTATAAATGGA+GGG 0.575354 tig0020858:-121521 Msa1386750:CDS
GCCATATGATGTTTATGTTG+TGG 0.577993 tig0020858:+122135 None:intergenic
CAGAATTAGCTTGAAACTTG+GGG 0.579815 tig0020858:+116831 None:intergenic
TACGCAGTTTCAAGTTTCAG+TGG 0.581082 tig0020858:+116120 None:intergenic
TTGTTTATAAATGGAGGGCA+AGG 0.581384 tig0020858:-121516 Msa1386750:CDS
TCCAGTCTTGGGAAATCCGA+AGG 0.584903 tig0020858:+116924 None:intergenic
TTAACAGATTCAGGAGGGCG+TGG 0.585022 tig0020858:+117346 None:intergenic
AAGTGATATGTCAAGAGCGT+GGG 0.585434 tig0020858:-121675 Msa1386750:CDS
ACATATGCAGAGGATAATGA+TGG 0.586922 tig0020858:-116288 Msa1386750:three_prime_UTR
ACCAGGCGAATAAACCTGAC+AGG 0.587917 tig0020858:+117225 None:intergenic
TCCAGAGCTTGATCTTCATG+AGG 0.590258 tig0020858:-118501 Msa1386750:CDS
TACATGGATCTCAGATGAAG+AGG 0.592642 tig0020858:+118364 None:intergenic
AATCAAATGGGGCAAAAGGG+TGG 0.592683 tig0020858:+121982 None:intergenic
CCTCGTCTTCATGAATGGCA+TGG 0.593293 tig0020858:+116648 None:intergenic
CAGCGAGGAGAATTTGGTGA+TGG 0.593565 tig0020858:-116471 Msa1386750:CDS
AAGACTGGATTGATAACATG+TGG 0.594651 tig0020858:-116910 Msa1386750:CDS
ATAGTGGCATTAGAGGATGC+TGG 0.595657 tig0020858:-117947 Msa1386750:CDS
GGTAGTAGCAGTGATGATGA+TGG 0.595660 tig0020858:-116542 Msa1386750:CDS
CAAAGGAAAACAACAAAACA+AGG 0.599427 tig0020858:+122088 None:intergenic
ATTACGTATATATAATCAGT+AGG 0.600377 tig0020858:+116350 None:intergenic
TCAAGAAATACAATGGGTAA+GGG 0.605604 tig0020858:-118032 Msa1386750:CDS
TAGCTGTTGTGGGGACTGAG+AGG 0.606373 tig0020858:-121603 Msa1386750:CDS
TAAGAGGAATAGAAGTTCTG+TGG 0.608266 tig0020858:-118159 Msa1386750:CDS
AACCTGACAAACTGGGTATG+CGG 0.612126 tig0020858:-117393 Msa1386750:CDS
TCTCTTGATACGTTCGCAGA+TGG 0.613005 tig0020858:-119299 Msa1386750:CDS
GCTCAGCTTAGTAAGTGCAA+AGG 0.620095 tig0020858:+118307 None:intergenic
CAAGTGATATGTCAAGAGCG+TGG 0.624113 tig0020858:-121676 Msa1386750:CDS
TCGAGGAGTTTAGCTCCCAA+GGG 0.625019 tig0020858:-116097 Msa1386750:three_prime_UTR
GTGGTCAATGGATCTATGAC+TGG 0.625673 tig0020858:-116806 Msa1386750:CDS
ATTCGGTGCTAGCTGTTGTG+GGG 0.629390 tig0020858:-121612 Msa1386750:CDS
CCAGAGCTTGATCTTCATGA+GGG 0.630541 tig0020858:-118500 Msa1386750:CDS
AAACTGGGTATGCGGTGTGA+CGG 0.631659 tig0020858:-117385 Msa1386750:CDS
GTAGCAAAACCTGACAAACT+GGG 0.634153 tig0020858:-117400 Msa1386750:CDS
GTTTCAAGCTAATTCTGCAG+TGG 0.637616 tig0020858:-116825 Msa1386750:CDS
AGAGAGAAACTATAGCGTCA+TGG 0.637683 tig0020858:+122018 None:intergenic
TGCATCTCATAAGAAGCTCA+AGG 0.639988 tig0020858:-117904 Msa1386750:intron
AACCTTTAACAGATTCAGGA+GGG 0.647433 tig0020858:+117341 None:intergenic
TTTACTTGAGACATATGTCG+GGG 0.650312 tig0020858:-121636 Msa1386750:CDS
GACGAGGACATCGACTCTGG+TGG 0.650694 tig0020858:-116632 Msa1386750:CDS
AATTTGAAATGCAAGAATCG+TGG 0.651892 tig0020858:+115936 None:intergenic
TTTCAGTCTAGAATCAAATG+GGG 0.653321 tig0020858:+121971 None:intergenic
TGTGGCACCATCAAAACCAA+AGG 0.657312 tig0020858:+122071 None:intergenic
TAGTAGTAATACATATGCAG+AGG 0.657740 tig0020858:-116298 Msa1386750:three_prime_UTR
CAACCTTTAACAGATTCAGG+AGG 0.659968 tig0020858:+117340 None:intergenic
CCATGCCATTCATGAAGACG+AGG 0.663027 tig0020858:-116648 Msa1386750:CDS
TGATGCGTTTGATAAAGACA+AGG 0.663316 tig0020858:-116576 Msa1386750:CDS
AATTAGCTTGAAACTTGGGG+CGG 0.666624 tig0020858:+116834 None:intergenic
TGGGGACTGAGAGGAGTGTG+AGG 0.667261 tig0020858:-121594 Msa1386750:CDS
AAACTTGAAACTGCGTATCG+AGG 0.669583 tig0020858:-116114 Msa1386750:three_prime_UTR
TCGGAAAATGATCGACAATG+TGG 0.673085 tig0020858:-115905 Msa1386750:three_prime_UTR
TATTCTTCCCAAAAGAAAGG+CGG 0.679220 tig0020858:-118243 Msa1386750:CDS
AGACTGGATTGATAACATGT+GGG 0.679658 tig0020858:-116909 Msa1386750:CDS
GGCGTGGTCGTACTAATAAG+CGG 0.679908 tig0020858:+117362 None:intergenic
TGATGCTGACAACACTGGAG+AGG 0.684947 tig0020858:-116495 Msa1386750:CDS
TCTTCATGAATGGCATGGAG+TGG 0.688507 tig0020858:+116653 None:intergenic
CATGCTTGACTTCCTGACCA+CGG 0.697314 tig0020858:+118528 None:intergenic
GGTTTGGAAGAACTTAATGG+CGG 0.697748 tig0020858:-116704 Msa1386750:CDS
AGAAGTGAAGTCAAACAATG+TGG 0.698720 tig0020858:+122053 None:intergenic
GATGATGGCTCTGACAATGA+CGG 0.699323 tig0020858:-116527 Msa1386750:CDS
TTACTTGAGACATATGTCGG+GGG 0.716612 tig0020858:-121635 Msa1386750:CDS
CAACACTGGAGAGGACAGCG+AGG 0.747441 tig0020858:-116486 Msa1386750:CDS
TTTGCACTTACTAAGCTGAG+CGG 0.753729 tig0020858:-118305 Msa1386750:CDS
AAAGTACGGTGGTTTCACCG+TGG 0.758266 tig0020858:-118545 Msa1386750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTTCTTCTAATTTAT+AGG - tig0020858:119559-119578 Msa1386750:intron 10.0%
!!! CATTGATTGTAAATAAAAAA+TGG + tig0020858:117787-117806 None:intergenic 15.0%
!! AAACAAGAAAGAAAAATATT+AGG + tig0020858:117870-117889 None:intergenic 15.0%
!!! AAGTTTAGCTTAATTTTATA+TGG - tig0020858:118394-118413 Msa1386750:CDS 15.0%
!! AAATTGTACATAAAATGATT+CGG + tig0020858:118660-118679 None:intergenic 15.0%
!!! CTAAAATGTTTATTTTATCA+TGG + tig0020858:121076-121095 None:intergenic 15.0%
!!! AAAGATTGATTTTTTTCATC+TGG - tig0020858:116274-116293 Msa1386750:three_prime_UTR 20.0%
!!! AAGATTGATTTTTTTCATCT+GGG - tig0020858:116275-116294 Msa1386750:three_prime_UTR 20.0%
!!! TTTGAGTTTTAGGATTTTTT+GGG - tig0020858:116328-116347 Msa1386750:three_prime_UTR 20.0%
!! ACAAATAAATAAACAACGAT+GGG + tig0020858:116406-116425 None:intergenic 20.0%
!! AACAAATAAATAAACAACGA+TGG + tig0020858:116407-116426 None:intergenic 20.0%
!! ATCAAACAAAATTACCATTA+CGG + tig0020858:116782-116801 None:intergenic 20.0%
!!! TTTAAAACCATGATGTAATT+AGG - tig0020858:117270-117289 Msa1386750:CDS 20.0%
!! AATCTAGATTCACAATAAAT+CGG + tig0020858:118051-118070 None:intergenic 20.0%
!! ATAAATCAACAAAAGAAAAG+TGG + tig0020858:118148-118167 None:intergenic 20.0%
!! AATGAAAAGAAGAAAATAAC+AGG + tig0020858:118367-118386 None:intergenic 20.0%
!!! GTTATTTTCTTCTTTTCATT+TGG - tig0020858:118367-118386 Msa1386750:CDS 20.0%
!! AATTGTACATAAAATGATTC+GGG + tig0020858:118659-118678 None:intergenic 20.0%
!! ACAAAAGTAAAGACAATTAA+AGG - tig0020858:118687-118706 Msa1386750:intron 20.0%
!! AAACAGTTTACATACATATA+TGG + tig0020858:119195-119214 None:intergenic 20.0%
!! AGTAAGCTAAAAATAACTTA+TGG - tig0020858:119394-119413 Msa1386750:intron 20.0%
!! ATAAAAGTCAATGATAACAA+GGG + tig0020858:119510-119529 None:intergenic 20.0%
!! AATAAAAGTCAATGATAACA+AGG + tig0020858:119511-119530 None:intergenic 20.0%
!!! TTGTTATCATTGACTTTTAT+TGG - tig0020858:119510-119529 Msa1386750:intron 20.0%
!! TCATTCATTTGTGTATATTA+TGG - tig0020858:119583-119602 Msa1386750:intron 20.0%
!! AAGACAAAAAGAAACAAAAA+AGG - tig0020858:119651-119670 Msa1386750:intron 20.0%
!! AGACAAAAAGAAACAAAAAA+GGG - tig0020858:119652-119671 Msa1386750:intron 20.0%
!! AAACAAATCATTTACACTAA+CGG + tig0020858:120547-120566 None:intergenic 20.0%
!! TAAATTATATATCTATTGGC+TGG - tig0020858:120693-120712 Msa1386750:intron 20.0%
!!! AAATTATATATCTATTGGCT+GGG - tig0020858:120694-120713 Msa1386750:intron 20.0%
!! ACAAGTATAAATAATGATTG+CGG - tig0020858:120728-120747 Msa1386750:intron 20.0%
!!! TGTTTATTTTATCATGGAAA+TGG + tig0020858:121070-121089 None:intergenic 20.0%
!! AATATATGGTAAAGGTAAAT+GGG - tig0020858:121835-121854 Msa1386750:five_prime_UTR 20.0%
!! ATTACGTATATATAATCAGT+AGG + tig0020858:121875-121894 None:intergenic 20.0%
!! TAATAATGAAATGAAACTTC+AGG - tig0020858:121900-121919 Msa1386750:five_prime_UTR 20.0%
!! AATAATGAAATGAAACTTCA+GGG - tig0020858:121901-121920 Msa1386750:five_prime_UTR 20.0%
! AAACAACAAAACAAGGATTA+AGG + tig0020858:116130-116149 None:intergenic 25.0%
!!! TTTTCAGTCTAGAATCAAAT+GGG + tig0020858:116255-116274 None:intergenic 25.0%
!!! TTTTTCAGTCTAGAATCAAA+TGG + tig0020858:116256-116275 None:intergenic 25.0%
!!! GTTTGAGTTTTAGGATTTTT+TGG - tig0020858:116327-116346 Msa1386750:three_prime_UTR 25.0%
!! TTTTTCCTTACACCAATTTA+GGG - tig0020858:116365-116384 Msa1386750:three_prime_UTR 25.0%
!! TTTTTACTTGAGACATATGT+CGG - tig0020858:116584-116603 Msa1386750:CDS 25.0%
! TAATCCATCAAAAATTGTTG+AGG + tig0020858:116672-116691 None:intergenic 25.0%
!!! CAACAATTTTTGATGGATTA+TGG - tig0020858:116672-116691 Msa1386750:CDS 25.0%
! CTACTAACGTTGTTTATAAA+TGG - tig0020858:116697-116716 Msa1386750:CDS 25.0%
! TAACGTTGTTTATAAATGGA+GGG - tig0020858:116701-116720 Msa1386750:CDS 25.0%
! TTTGTATGAGTTATTGTTTG+TGG - tig0020858:116840-116859 Msa1386750:CDS 25.0%
!!! TATGTGGTGAATTGTTTTAT+TGG - tig0020858:116872-116891 Msa1386750:CDS 25.0%
!!! GAATTGTTTTATTGGATGAA+TGG - tig0020858:116880-116899 Msa1386750:CDS 25.0%
! TTTATTGGATGAATGGTTAT+TGG - tig0020858:116887-116906 Msa1386750:CDS 25.0%
! TTCATGATCACTTATATTGT+TGG - tig0020858:117084-117103 Msa1386750:intron 25.0%
!! TATATTGTTGGTTAATGCAA+AGG - tig0020858:117096-117115 Msa1386750:intron 25.0%
! TAGAAAATTGTGAACAAATG+AGG - tig0020858:117161-117180 Msa1386750:intron 25.0%
!!! TACATCATGGTTTTAAATTG+TGG + tig0020858:117267-117286 None:intergenic 25.0%
!! AGTAAATAGTTTGTATGACT+TGG + tig0020858:117379-117398 None:intergenic 25.0%
! AGATTGGACTATTATTCTTT+GGG + tig0020858:117410-117429 None:intergenic 25.0%
! AAGATTGGACTATTATTCTT+TGG + tig0020858:117411-117430 None:intergenic 25.0%
!! TTCTCAATGTAATGTGTTTT+CGG + tig0020858:117538-117557 None:intergenic 25.0%
! TACAATCAATGCATTAAACA+TGG - tig0020858:117796-117815 Msa1386750:intron 25.0%
!!! ATGTTTATCGATTTTGGATA+TGG - tig0020858:118010-118029 Msa1386750:CDS 25.0%
! ATCTAGATTCACAATAAATC+GGG + tig0020858:118050-118069 None:intergenic 25.0%
!!! ATGTAGTCAACTGTTTTTTA+TGG - tig0020858:118104-118123 Msa1386750:CDS 25.0%
!!! TTTTTTACTACTACCATACA+TGG + tig0020858:118259-118278 None:intergenic 25.0%
! ATTATTTGCCAATTGATCAA+AGG + tig0020858:118442-118461 None:intergenic 25.0%
! GTTCTATCATAAACCATATT+TGG + tig0020858:118489-118508 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG - tig0020858:118493-118512 Msa1386750:CDS 25.0%
! AAGTAAAGACAATTAAAGGA+AGG - tig0020858:118691-118710 Msa1386750:intron 25.0%
!!! AGATGGATTTTAATAGTCAT+TGG + tig0020858:118994-119013 None:intergenic 25.0%
! CATGTCATATAAAGATACAA+AGG + tig0020858:119028-119047 None:intergenic 25.0%
! ATATCTGAACTTTGAATGTT+CGG + tig0020858:119098-119117 None:intergenic 25.0%
! TTCAAAGTTCAGATATTGTA+TGG - tig0020858:119102-119121 Msa1386750:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + tig0020858:119259-119278 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + tig0020858:119260-119279 None:intergenic 25.0%
! AAAACTGTCAAGAAATACAA+TGG - tig0020858:120183-120202 Msa1386750:intron 25.0%
! AAACTGTCAAGAAATACAAT+GGG - tig0020858:120184-120203 Msa1386750:intron 25.0%
! CAAGTATAAATAATGATTGC+GGG - tig0020858:120729-120748 Msa1386750:intron 25.0%
!!! AACCTGTTATTAATTTGTGT+AGG - tig0020858:120779-120798 Msa1386750:intron 25.0%
! TTCCTACACAAATTAATAAC+AGG + tig0020858:120784-120803 None:intergenic 25.0%
!!! GTTATTAATTTGTGTAGGAA+TGG - tig0020858:120784-120803 Msa1386750:intron 25.0%
! GAAAAATTGTTCATTGTTTC+TGG - tig0020858:121149-121168 Msa1386750:intron 25.0%
!! ACACACATAATGTTTTTCTT+TGG - tig0020858:121207-121226 Msa1386750:intron 25.0%
!! CACACATAATGTTTTTCTTT+GGG - tig0020858:121208-121227 Msa1386750:intron 25.0%
!! TAACATGTGGGTTAATATAT+TGG - tig0020858:121325-121344 Msa1386750:intron 25.0%
!! AACATGTGGGTTAATATATT+GGG - tig0020858:121326-121345 Msa1386750:intron 25.0%
! ATACAGGTTACATGAATATA+TGG - tig0020858:121821-121840 Msa1386750:five_prime_UTR 25.0%
! GTTACATGAATATATGGTAA+AGG - tig0020858:121827-121846 Msa1386750:five_prime_UTR 25.0%
! GAATATATGGTAAAGGTAAA+TGG - tig0020858:121834-121853 Msa1386750:five_prime_UTR 25.0%
!! TTAGTGTATAGCTTATGTTT+TGG - tig0020858:121980-121999 Msa1386750:five_prime_UTR 25.0%
!! TAGTGTATAGCTTATGTTTT+GGG - tig0020858:121981-122000 Msa1386750:five_prime_UTR 25.0%
!! TCTTGATATTTAGTTCATGT+GGG - tig0020858:122052-122071 Msa1386750:five_prime_UTR 25.0%
! ATATAGTACTTCATGATCAA+AGG + tig0020858:122186-122205 Msa1386760:CDS 25.0%
! ACATACAACCATATATGAAT+AGG + tig0020858:122246-122265 Msa1386760:CDS 25.0%
! TTCTTGCATTTCAAATTATC+AGG - tig0020858:122292-122311 Msa1386750:five_prime_UTR 25.0%
! TCTTGCATTTCAAATTATCA+GGG - tig0020858:122293-122312 Msa1386750:five_prime_UTR 25.0%
AACCTCAAAAAGAACAACAA+CGG + tig0020858:115907-115926 None:intergenic 30.0%
!! CCTTTTTGAGAGTGAAAAAA+GGG + tig0020858:115960-115979 None:intergenic 30.0%
!!! CCTTTTTTCACTCTCAAAAA+GGG - tig0020858:115958-115977 Msa1386750:three_prime_UTR 30.0%
! GAAAAAGAGAGGATTTTGAA+GGG + tig0020858:116016-116035 None:intergenic 30.0%
! AGAAAAAGAGAGGATTTTGA+AGG + tig0020858:116017-116036 None:intergenic 30.0%
TCCACAACATAAACATCATA+TGG - tig0020858:116086-116105 Msa1386750:three_prime_UTR 30.0%
CAAAGGAAAACAACAAAACA+AGG + tig0020858:116137-116156 None:intergenic 30.0%
!!! CTTGTTTTGTTGTTTTCCTT+TGG - tig0020858:116135-116154 Msa1386750:three_prime_UTR 30.0%
!!! TTGTTTTCCTTTGGTTTTGA+TGG - tig0020858:116144-116163 Msa1386750:three_prime_UTR 30.0%
! TTTCAGTCTAGAATCAAATG+GGG + tig0020858:116254-116273 None:intergenic 30.0%
!!! GGTTTTGGTTTTTTCATCAA+TGG - tig0020858:116305-116324 Msa1386750:three_prime_UTR 30.0%
!! TCATCAATGGTTTGAGTTTT+AGG - tig0020858:116318-116337 Msa1386750:three_prime_UTR 30.0%
! GTTTTTCCTTACACCAATTT+AGG - tig0020858:116364-116383 Msa1386750:three_prime_UTR 30.0%
TCAAGTAAAAATGAATCACG+CGG + tig0020858:116575-116594 None:intergenic 30.0%
! TTTTACTTGAGACATATGTC+GGG - tig0020858:116585-116604 Msa1386750:CDS 30.0%
! TGTTCCTCAACAATTTTTGA+TGG - tig0020858:116665-116684 Msa1386750:CDS 30.0%
CTAACGTTGTTTATAAATGG+AGG - tig0020858:116700-116719 Msa1386750:CDS 30.0%
!!! ATGAATGGTTATTGGCTTTT+GGG - tig0020858:116895-116914 Msa1386750:CDS 30.0%
AACTTGACCAAATTCTTGTA+GGG + tig0020858:117039-117058 None:intergenic 30.0%
AAACTTGACCAAATTCTTGT+AGG + tig0020858:117040-117059 None:intergenic 30.0%
CAATCTTCCTAATTACATCA+TGG + tig0020858:117280-117299 None:intergenic 30.0%
TGATGTAATTAGGAAGATTG+AGG - tig0020858:117280-117299 Msa1386750:CDS 30.0%
AGGTAATAACTAGAGAACTA+GGG - tig0020858:117300-117319 Msa1386750:CDS 30.0%
! AATGTAATGTGTTTTCGGAA+TGG + tig0020858:117533-117552 None:intergenic 30.0%
AATCAATGCATTAAACATGG+TGG - tig0020858:117799-117818 Msa1386750:intron 30.0%
ATCAATGCATTAAACATGGT+GGG - tig0020858:117800-117819 Msa1386750:intron 30.0%
!!! TCTCGAATGTTTATCGATTT+TGG - tig0020858:118004-118023 Msa1386750:CDS 30.0%
TTGTGAATCTAGATTCACTA+TGG - tig0020858:118056-118075 Msa1386750:CDS 30.0%
!! ACATTAAGTTTTGGCAATGT+CGG + tig0020858:118088-118107 None:intergenic 30.0%
! CAGTTGACTACATTAAGTTT+TGG + tig0020858:118097-118116 None:intergenic 30.0%
!! ATCGATTTGATAACCATGTA+TGG - tig0020858:118243-118262 Msa1386750:CDS 30.0%
! AAAATAGCCTCTCCTTTTAA+TGG - tig0020858:118275-118294 Msa1386750:CDS 30.0%
! AAATAGCCTCTCCTTTTAAT+GGG - tig0020858:118276-118295 Msa1386750:CDS 30.0%
!! TATGGCTAGAAAATTTTGAC+AGG - tig0020858:118412-118431 Msa1386750:CDS 30.0%
!! ATGGCTAGAAAATTTTGACA+GGG - tig0020858:118413-118432 Msa1386750:CDS 30.0%
CAATACCTTAATTGTCTTCA+TGG + tig0020858:118608-118627 None:intergenic 30.0%
!! AAGGTATTGAGTTGAATACT+TGG - tig0020858:118619-118638 Msa1386750:CDS 30.0%
CAGAAAAATACCTGATAAAC+TGG - tig0020858:118961-118980 Msa1386750:intron 30.0%
! GATATTTTCATAAGCTATCC+TGG - tig0020858:119359-119378 Msa1386750:intron 30.0%
! AAGCACTTGTTAGATTGTTT+GGG + tig0020858:119448-119467 None:intergenic 30.0%
! TAAGCACTTGTTAGATTGTT+TGG + tig0020858:119449-119468 None:intergenic 30.0%
AACAAAAAAGGGTGAAAGTA+CGG - tig0020858:119663-119682 Msa1386750:intron 30.0%
TTGTATTTCTCGTAATGCTT+AGG + tig0020858:119821-119840 None:intergenic 30.0%
! CAATTCAAACCAGAAAGTAT+AGG + tig0020858:119956-119975 None:intergenic 30.0%
TCAAGAAATACAATGGGTAA+GGG - tig0020858:120190-120209 Msa1386750:intron 30.0%
ACCTTATCATTGACCTTAAA+AGG + tig0020858:120238-120257 None:intergenic 30.0%
!! GGTTTTGTATGATGACATAA+TGG - tig0020858:120339-120358 Msa1386750:intron 30.0%
TGAGTGAGAGAAGAAATATA+AGG + tig0020858:120404-120423 None:intergenic 30.0%
!!! CTTTTAAAGTCACACATGAT+TGG - tig0020858:120623-120642 Msa1386750:intron 30.0%
AGGAAATACTACAAGAAAAC+GGG + tig0020858:121043-121062 None:intergenic 30.0%
CAGGAAATACTACAAGAAAA+CGG + tig0020858:121044-121063 None:intergenic 30.0%
TTTATCATGGAAATGGAAAC+AGG + tig0020858:121063-121082 None:intergenic 30.0%
!! TTGTTTCTGGAAATGCATTA+TGG - tig0020858:121162-121181 Msa1386750:intron 30.0%
! AGGTGAAGAGAAGTTTTTAT+TGG - tig0020858:121262-121281 Msa1386750:intron 30.0%
TAGTAGTAATACATATGCAG+AGG - tig0020858:121924-121943 Msa1386750:five_prime_UTR 30.0%
! GTCTTGATATTTAGTTCATG+TGG - tig0020858:122051-122070 Msa1386750:five_prime_UTR 30.0%
AAAGTACAAACTTTACCCTT+GGG + tig0020858:122143-122162 Msa1386760:CDS 30.0%
TATGTGCACCTATTCATATA+TGG - tig0020858:122235-122254 Msa1386750:five_prime_UTR 30.0%
! AATTTGAAATGCAAGAATCG+TGG + tig0020858:122289-122308 Msa1386760:CDS 30.0%
CATTTCAAATTATCAGGGAT+CGG - tig0020858:122298-122317 Msa1386750:five_prime_UTR 30.0%
!!! CCCTTTTTTCACTCTCAAAA+AGG - tig0020858:115957-115976 Msa1386750:three_prime_UTR 35.0%
!! CCCTTTTTGAGAGTGAAAAA+AGG + tig0020858:115961-115980 None:intergenic 35.0%
AAAGGAGGGTTTGAAGAAAA+TGG + tig0020858:115990-116009 None:intergenic 35.0%
!! ATTTTGAAGGGTGAAAAGGA+GGG + tig0020858:116004-116023 None:intergenic 35.0%
AATGGATGAGAGAAAAAGAG+AGG + tig0020858:116027-116046 None:intergenic 35.0%
TTGTGGAAAAACAAAAACCC+AGG + tig0020858:116073-116092 None:intergenic 35.0%
GCCATATGATGTTTATGTTG+TGG + tig0020858:116090-116109 None:intergenic 35.0%
AGAAGTGAAGTCAAACAATG+TGG + tig0020858:116172-116191 None:intergenic 35.0%
TAGAATCAAATGGGGCAAAA+GGG + tig0020858:116246-116265 None:intergenic 35.0%
TTCCTAAACCAACCCTAAAT+TGG + tig0020858:116380-116399 None:intergenic 35.0%
!! GGTGGATTTTGAAGGATTTA+AGG - tig0020858:116478-116497 Msa1386750:CDS 35.0%
TTGAAGGATTTAAGGATGTC+AGG - tig0020858:116486-116505 Msa1386750:CDS 35.0%
!!! TTGATGCTGTTTTTGTGTCA+TGG - tig0020858:116517-116536 Msa1386750:CDS 35.0%
!!! TGATGCTGTTTTTGTGTCAT+GGG - tig0020858:116518-116537 Msa1386750:CDS 35.0%
TTTACTTGAGACATATGTCG+GGG - tig0020858:116586-116605 Msa1386750:CDS 35.0%
TTGTTTATAAATGGAGGGCA+AGG - tig0020858:116706-116725 Msa1386750:CDS 35.0%
ATAGATTCCTCGAAACCAAA+TGG + tig0020858:116755-116774 None:intergenic 35.0%
!!! GATGAATGGTTATTGGCTTT+TGG - tig0020858:116894-116913 Msa1386750:CDS 35.0%
! TTTGGGAATTTTTGTCACGA+AGG - tig0020858:116912-116931 Msa1386750:CDS 35.0%
TAACAAGAACACATGAGCTT+AGG + tig0020858:116957-116976 None:intergenic 35.0%
TGTTCTTGTTAGATGCTACA+TGG - tig0020858:116966-116985 Msa1386750:intron 35.0%
! ATAAGAAGAAGTGCAATGTG+TGG + tig0020858:117010-117029 None:intergenic 35.0%
AAGGTTATCAATTGTGACTG+TGG - tig0020858:117115-117134 Msa1386750:intron 35.0%
GAGGTAATAACTAGAGAACT+AGG - tig0020858:117299-117318 Msa1386750:CDS 35.0%
! AACTAGAGAACTAGGGTTTT+AGG - tig0020858:117307-117326 Msa1386750:CDS 35.0%
! ACTAGAGAACTAGGGTTTTA+GGG - tig0020858:117308-117327 Msa1386750:CDS 35.0%
! TAGCTGACATGGTTTAAGAT+TGG + tig0020858:117426-117445 None:intergenic 35.0%
TGTTGCTGTGATAAAGGATA+CGG - tig0020858:117595-117614 Msa1386750:intron 35.0%
GAAATCTGTTGTAATCCTTG+AGG - tig0020858:117630-117649 Msa1386750:intron 35.0%
CAGATTGTGATTTCTGTGAT+CGG - tig0020858:117719-117738 Msa1386750:intron 35.0%
ATGGATCAAAACTCGAAACT+CGG + tig0020858:117902-117921 None:intergenic 35.0%
!!! AGTTTCGAGTTTTGATCCAT+CGG - tig0020858:117902-117921 Msa1386750:intron 35.0%
! ATTCGAGATTTGTATCGATC+GGG + tig0020858:117992-118011 None:intergenic 35.0%
! CATTCGAGATTTGTATCGAT+CGG + tig0020858:117993-118012 None:intergenic 35.0%
ATCAACAAAAGAAAAGTGGC+TGG + tig0020858:118144-118163 None:intergenic 35.0%
! AATAGCCTCTCCTTTTAATG+GGG - tig0020858:118277-118296 Msa1386750:CDS 35.0%
TGAAGCTATGTGTCCAAATA+TGG - tig0020858:118473-118492 Msa1386750:CDS 35.0%
!!! TACTTCATGCTAGTTTTCTG+TGG - tig0020858:118733-118752 Msa1386750:intron 35.0%
! GAATAAAAGTGGGTTCAAAG+TGG + tig0020858:118810-118829 None:intergenic 35.0%
CGTGACAAGAGAATAAAAGT+GGG + tig0020858:118820-118839 None:intergenic 35.0%
!! CCACTTTTATTCTCTTGTCA+CGG - tig0020858:118818-118837 Msa1386750:intron 35.0%
! AACCTCAATTTTTCTCTGAC+AGG - tig0020858:118860-118879 Msa1386750:intron 35.0%
TACCTGTCAGAGAAAAATTG+AGG + tig0020858:118865-118884 None:intergenic 35.0%
! TGGTTCTATACCAGTTTATC+AGG + tig0020858:118974-118993 None:intergenic 35.0%
ATCTGCAATGCAGAAAACAT+AGG + tig0020858:119065-119084 None:intergenic 35.0%
AGTTCAGATATTGTATGGTC+AGG - tig0020858:119107-119126 Msa1386750:intron 35.0%
! AGTTATTTCCACGCATTGTT+GGG - tig0020858:119233-119252 Msa1386750:intron 35.0%
! TGACTTTTATTGGCATACAG+AGG - tig0020858:119520-119539 Msa1386750:intron 35.0%
TGTGTATATTATGGCTGAAG+AGG - tig0020858:119592-119611 Msa1386750:intron 35.0%
GAAGAGGAAAATCACTATCT+CGG - tig0020858:119608-119627 Msa1386750:intron 35.0%
AAATCACTATCTCGGTTACT+TGG - tig0020858:119616-119635 Msa1386750:intron 35.0%
TTTCATCACACCTAATGTTC+AGG - tig0020858:119751-119770 Msa1386750:intron 35.0%
!! CCTTTCTTTTGGGAAGAATA+GGG + tig0020858:119979-119998 None:intergenic 35.0%
TATTCTTCCCAAAAGAAAGG+CGG - tig0020858:119979-119998 Msa1386750:intron 35.0%
TTCCCACCATCTTCAAATTT+CGG + tig0020858:120010-120029 None:intergenic 35.0%
ACTTCTATTCCTCTTATTGC+TGG + tig0020858:120059-120078 None:intergenic 35.0%
TAAGAGGAATAGAAGTTCTG+TGG - tig0020858:120063-120082 Msa1386750:intron 35.0%
CTTATGAATGAGATGCCAAA+TGG - tig0020858:120133-120152 Msa1386750:intron 35.0%
!!! ACAGTTTTAGTTTCAGACTC+GGG + tig0020858:120171-120190 None:intergenic 35.0%
!!! GACAGTTTTAGTTTCAGACT+CGG + tig0020858:120172-120191 None:intergenic 35.0%
GTCAAGAAATACAATGGGTA+AGG - tig0020858:120189-120208 Msa1386750:intron 35.0%
!!! GCCTTTTAAGGTCAATGATA+AGG - tig0020858:120234-120253 Msa1386750:intron 35.0%
!! GTGATTTTTGAGGAAGAATG+TGG - tig0020858:120751-120770 Msa1386750:intron 35.0%
AACCTTTAACAGATTCAGGA+GGG + tig0020858:120884-120903 None:intergenic 35.0%
GTACAACCTTTAACAGATTC+AGG + tig0020858:120888-120907 None:intergenic 35.0%
AAAGGTTGTACTTTCGAGAT+TGG - tig0020858:120897-120916 Msa1386750:intron 35.0%
CAAGTAATTCAAGTCATACC+AGG + tig0020858:121017-121036 None:intergenic 35.0%
CTGGTATGACTTGAATTACT+TGG - tig0020858:121015-121034 Msa1386750:intron 35.0%
GGAAATACTACAAGAAAACG+GGG + tig0020858:121042-121061 None:intergenic 35.0%
! ATGGTAATGTGATTCTCTTC+AGG - tig0020858:121242-121261 Msa1386750:intron 35.0%
CATGTTATCAATCCAGTCTT+GGG + tig0020858:121312-121331 None:intergenic 35.0%
ACATGTTATCAATCCAGTCT+TGG + tig0020858:121313-121332 None:intergenic 35.0%
! AAGACTGGATTGATAACATG+TGG - tig0020858:121312-121331 Msa1386750:intron 35.0%
! AGACTGGATTGATAACATGT+GGG - tig0020858:121313-121332 Msa1386750:intron 35.0%
GGTTAATATATTGGGAAAGC+CGG - tig0020858:121334-121353 Msa1386750:intron 35.0%
GATAAAAAGCTGCAAATGTC+CGG + tig0020858:121356-121375 None:intergenic 35.0%
! CAGAATTAGCTTGAAACTTG+GGG + tig0020858:121394-121413 None:intergenic 35.0%
! GCAGAATTAGCTTGAAACTT+GGG + tig0020858:121395-121414 None:intergenic 35.0%
! TGCAGAATTAGCTTGAAACT+TGG + tig0020858:121396-121415 None:intergenic 35.0%
TAAAGTTGAAGTTGCTCCAA+AGG - tig0020858:121478-121497 Msa1386750:CDS 35.0%
! GATGATTTTTGCTCAACCTT+TGG + tig0020858:121497-121516 None:intergenic 35.0%
AAGGTTGAGCAAAAATCATC+TGG - tig0020858:121497-121516 Msa1386750:CDS 35.0%
TGAGCAAAAATCATCTGGTT+TGG - tig0020858:121502-121521 Msa1386750:CDS 35.0%
!! TCTGGTTTGGAAGAACTTAA+TGG - tig0020858:121515-121534 Msa1386750:CDS 35.0%
GTATGAAGAGAATGACTTTG+TGG - tig0020858:121540-121559 Msa1386750:CDS 35.0%
TGATGCGTTTGATAAAGACA+AGG - tig0020858:121646-121665 Msa1386750:CDS 35.0%
AAAGACAAGGATTGTAACTC+TGG - tig0020858:121659-121678 Msa1386750:CDS 35.0%
!! TTGGTGATGGAGGAAAAAAT+TGG - tig0020858:121764-121783 Msa1386750:five_prime_UTR 35.0%
ACATATGCAGAGGATAATGA+TGG - tig0020858:121934-121953 Msa1386750:five_prime_UTR 35.0%
!!! ATAGCTTATGTTTTGGGTTG+AGG - tig0020858:121987-122006 Msa1386750:five_prime_UTR 35.0%
CAAAGTACAAACTTTACCCT+TGG + tig0020858:122144-122163 Msa1386760:CDS 35.0%
!! CACCGTTGTTGTTCTTTTTG+AGG - tig0020858:115902-115921 Msa1386750:three_prime_UTR 40.0%
!! GATTTTGAAGGGTGAAAAGG+AGG + tig0020858:116005-116024 None:intergenic 40.0%
!! GAGGATTTTGAAGGGTGAAA+AGG + tig0020858:116008-116027 None:intergenic 40.0%
!! AAACCCAGGTTTTGTGAAGT+GGG + tig0020858:116059-116078 None:intergenic 40.0%
!! AAAACCCAGGTTTTGTGAAG+TGG + tig0020858:116060-116079 None:intergenic 40.0%
AGAGAGAAACTATAGCGTCA+TGG + tig0020858:116207-116226 None:intergenic 40.0%
CTAGAATCAAATGGGGCAAA+AGG + tig0020858:116247-116266 None:intergenic 40.0%
!!! TTTTTTCATCTGGGTCGTTG+TGG - tig0020858:116284-116303 Msa1386750:three_prime_UTR 40.0%
!!! ATTTTTTGGGCTAGCTCGAT+AGG - tig0020858:116341-116360 Msa1386750:three_prime_UTR 40.0%
!!! TTTTTTGGGCTAGCTCGATA+GGG - tig0020858:116342-116361 Msa1386750:three_prime_UTR 40.0%
! TCCTTACACCAATTTAGGGT+TGG - tig0020858:116369-116388 Msa1386750:three_prime_UTR 40.0%
ACCAACCCTAAATTGGTGTA+AGG + tig0020858:116373-116392 None:intergenic 40.0%
!! CACCAATTTAGGGTTGGTTT+AGG - tig0020858:116375-116394 Msa1386750:three_prime_UTR 40.0%
!!! TAGAGTGTTGCTTTTGCTGT+TGG - tig0020858:116448-116467 Msa1386750:CDS 40.0%
TTTAAGGATGTCAGGTGATG+AGG - tig0020858:116494-116513 Msa1386750:CDS 40.0%
! AAGTGATATGTCAAGAGCGT+GGG - tig0020858:116547-116566 Msa1386750:CDS 40.0%
TTACTTGAGACATATGTCGG+GGG - tig0020858:116587-116606 Msa1386750:CDS 40.0%
TTTATAAATGGAGGGCAAGG+AGG - tig0020858:116709-116728 Msa1386750:CDS 40.0%
TTATAAATGGAGGGCAAGGA+GGG - tig0020858:116710-116729 Msa1386750:CDS 40.0%
TTTGTGGTTGCAAGTGTATG+TGG - tig0020858:116856-116875 Msa1386750:CDS 40.0%
TGAGTCACCCTACAAGAATT+TGG - tig0020858:117029-117048 Msa1386750:intron 40.0%
TGACCTCAAAAGTCTTTACG+TGG - tig0020858:117219-117238 Msa1386750:intron 40.0%
GGACTATTATTCTTTGGGCT+GGG + tig0020858:117405-117424 None:intergenic 40.0%
TGGACTATTATTCTTTGGGC+TGG + tig0020858:117406-117425 None:intergenic 40.0%
! CTTTCATTGACTAGCTGACA+TGG + tig0020858:117437-117456 None:intergenic 40.0%
CGTGACACAATACACTCTAT+CGG - tig0020858:117472-117491 Msa1386750:intron 40.0%
GTGACACAATACACTCTATC+GGG - tig0020858:117473-117492 Msa1386750:intron 40.0%
!! CTTTAAAATGACGCGTCAGT+GGG + tig0020858:117510-117529 None:intergenic 40.0%
CAAGTCTGTTGCTGTGATAA+AGG - tig0020858:117589-117608 Msa1386750:intron 40.0%
TTGTAATCCTTGAGGCTTGA+TGG - tig0020858:117638-117657 Msa1386750:intron 40.0%
! GGCTTGATGGATAAGGAAAT+TGG - tig0020858:117651-117670 Msa1386750:intron 40.0%
AAATCACAATCTGGCAGCTA+CGG + tig0020858:117712-117731 None:intergenic 40.0%
CGATCACAGAAATCACAATC+TGG + tig0020858:117721-117740 None:intergenic 40.0%
TGGATCAAAACTCGAAACTC+GGG + tig0020858:117901-117920 None:intergenic 40.0%
ACAGGTGACCATTGTTATGA+GGG + tig0020858:118349-118368 None:intergenic 40.0%
AACAGGTGACCATTGTTATG+AGG + tig0020858:118350-118369 None:intergenic 40.0%
! CAGGGTATCCTTTGATCAAT+TGG - tig0020858:118431-118450 Msa1386750:CDS 40.0%
CAATTTGATCCCCAGTTAGT+GGG - tig0020858:118518-118537 Msa1386750:CDS 40.0%
TGCGTCCATGAAGACAATTA+AGG - tig0020858:118600-118619 Msa1386750:CDS 40.0%
ACGGCAAAAATGGAATGCAA+CGG + tig0020858:118759-118778 None:intergenic 40.0%
AGCAAAAGACACGGCAAAAA+TGG + tig0020858:118769-118788 None:intergenic 40.0%
CCATGTTGTAGCAAAAGACA+CGG + tig0020858:118778-118797 None:intergenic 40.0%
CCGTGACAAGAGAATAAAAG+TGG + tig0020858:118821-118840 None:intergenic 40.0%
CAAAGGAAACTAACGACAGA+TGG + tig0020858:119011-119030 None:intergenic 40.0%
CAATGCAGAAAACATAGGCA+TGG + tig0020858:119060-119079 None:intergenic 40.0%
CTTCAGCTGTTTAGCACAAA+AGG + tig0020858:119141-119160 None:intergenic 40.0%
! CAGTTATTTCCACGCATTGT+TGG - tig0020858:119232-119251 Msa1386750:intron 40.0%
CTTACTTTCATAAGCTCTCC+AGG + tig0020858:119380-119399 None:intergenic 40.0%
AGATTGTTTGGGAGAGCTTA+TGG + tig0020858:119437-119456 None:intergenic 40.0%
AATGATAACAAGGGTCTGTG+TGG + tig0020858:119501-119520 None:intergenic 40.0%
! AAAAAAGGGTGAAAGTACGG+TGG - tig0020858:119666-119685 Msa1386750:intron 40.0%
TACATGGATCTCAGATGAAG+AGG + tig0020858:119861-119880 None:intergenic 40.0%
CTCAGCTTAGTAAGTGCAAA+GGG + tig0020858:119917-119936 None:intergenic 40.0%
TTTGCACTTACTAAGCTGAG+CGG - tig0020858:119917-119936 Msa1386750:intron 40.0%
AGTAACCAGCCTATACTTTC+TGG - tig0020858:119944-119963 Msa1386750:intron 40.0%
! TCAAACCAGAAAGTATAGGC+TGG + tig0020858:119952-119971 None:intergenic 40.0%
CCCTATTCTTCCCAAAAGAA+AGG - tig0020858:119976-119995 Msa1386750:intron 40.0%
!! GCCTTTCTTTTGGGAAGAAT+AGG + tig0020858:119980-119999 None:intergenic 40.0%
GACTGTCCGAAATTTGAAGA+TGG - tig0020858:120001-120020 Msa1386750:intron 40.0%
TGTCCGAAATTTGAAGATGG+TGG - tig0020858:120004-120023 Msa1386750:intron 40.0%
GTCCGAAATTTGAAGATGGT+GGG - tig0020858:120005-120024 Msa1386750:intron 40.0%
TCACTCAAGATGATCCTTTG+AGG - tig0020858:120032-120051 Msa1386750:intron 40.0%
! TAGAAGTTCTGTGGAGTACT+CGG - tig0020858:120072-120091 Msa1386750:intron 40.0%
AGTTTCAGACTCGGGTATTT+CGG + tig0020858:120163-120182 None:intergenic 40.0%
GAGTTTCTCTCTCAAGATAG+TGG - tig0020858:120259-120278 Msa1386750:intron 40.0%
! TCTCAAGATAGTGGCATTAG+AGG - tig0020858:120268-120287 Msa1386750:intron 40.0%
TGCATCTCATAAGAAGCTCA+AGG - tig0020858:120318-120337 Msa1386750:intron 40.0%
TGACGACTATGACTGATTGA+TGG + tig0020858:120573-120592 None:intergenic 40.0%
! ATGATTGCGGGTGATTTTTG+AGG - tig0020858:120741-120760 Msa1386750:intron 40.0%
! GTTTTGCTACTCTTTGTGCA+GGG + tig0020858:120812-120831 None:intergenic 40.0%
AGTAGCAAAACCTGACAAAC+TGG - tig0020858:120821-120840 Msa1386750:intron 40.0%
GTAGCAAAACCTGACAAACT+GGG - tig0020858:120822-120841 Msa1386750:intron 40.0%
CAACCTTTAACAGATTCAGG+AGG + tig0020858:120885-120904 None:intergenic 40.0%
! AATCCGAAGGTCTCTCTTTT+CGG + tig0020858:121288-121307 None:intergenic 40.0%
! AATTAGCTTGAAACTTGGGG+CGG + tig0020858:121391-121410 None:intergenic 40.0%
GTTTCAAGCTAATTCTGCAG+TGG - tig0020858:121397-121416 Msa1386750:intron 40.0%
ACTTCAACTTTAGCGATTGG+TGG + tig0020858:121470-121489 None:intergenic 40.0%
GCAACTTCAACTTTAGCGAT+TGG + tig0020858:121473-121492 None:intergenic 40.0%
GGTTTGGAAGAACTTAATGG+CGG - tig0020858:121518-121537 Msa1386750:CDS 40.0%
!! ACGCAGTTTCAAGTTTCAGT+GGG + tig0020858:122104-122123 None:intergenic 40.0%
!! TACGCAGTTTCAAGTTTCAG+TGG + tig0020858:122105-122124 None:intergenic 40.0%
AAACTTGAAACTGCGTATCG+AGG - tig0020858:122108-122127 Msa1386750:five_prime_UTR 40.0%
AATGCAAGAATCGTGGCATA+TGG + tig0020858:122282-122301 Msa1386760:CDS 40.0%
TCGGAAAATGATCGACAATG+TGG - tig0020858:122317-122336 Msa1386750:five_prime_UTR 40.0%
! GTTTTGTGAAGTGGGGTTCA+AGG + tig0020858:116051-116070 None:intergenic 45.0%
AACCCCACTTCACAAAACCT+GGG - tig0020858:116053-116072 Msa1386750:three_prime_UTR 45.0%
!! AACCCAGGTTTTGTGAAGTG+GGG + tig0020858:116058-116077 None:intergenic 45.0%
TGTGGCACCATCAAAACCAA+AGG + tig0020858:116154-116173 None:intergenic 45.0%
AATCAAATGGGGCAAAAGGG+TGG + tig0020858:116243-116262 None:intergenic 45.0%
!!! AGTGTTGCTTTTGCTGTTGG+TGG - tig0020858:116451-116470 Msa1386750:CDS 45.0%
!!! TGCTGTTTTTGTGTCATGGG+AGG - tig0020858:116521-116540 Msa1386750:CDS 45.0%
CAAGTGATATGTCAAGAGCG+TGG - tig0020858:116546-116565 Msa1386750:CDS 45.0%
! TGTTGACTGGCTCAACCATT+TGG - tig0020858:116737-116756 Msa1386750:CDS 45.0%
AGGAATCTATCGCACCGTAA+TGG - tig0020858:116765-116784 Msa1386750:CDS 45.0%
! CCACCACGTAAAGACTTTTG+AGG + tig0020858:117225-117244 None:intergenic 45.0%
CCTCAAAAGTCTTTACGTGG+TGG - tig0020858:117222-117241 Msa1386750:intron 45.0%
TGATACATTTCAGCTCCACG+TGG + tig0020858:117342-117361 None:intergenic 45.0%
!! GCTTTAAAATGACGCGTCAG+TGG + tig0020858:117511-117530 None:intergenic 45.0%
! TGACAGTGTTGAAGAAGCAC+AGG + tig0020858:117571-117590 None:intergenic 45.0%
CTGTGATAAAGGATACGGAG+TGG - tig0020858:117600-117619 Msa1386750:intron 45.0%
TGATAAAGGATACGGAGTGG+TGG - tig0020858:117603-117622 Msa1386750:intron 45.0%
GATAAAGGATACGGAGTGGT+GGG - tig0020858:117604-117623 Msa1386750:intron 45.0%
ATAAAGGATACGGAGTGGTG+GGG - tig0020858:117605-117624 Msa1386750:intron 45.0%
! TCCTTGAGGCTTGATGGATA+AGG - tig0020858:117644-117663 Msa1386750:intron 45.0%
TCCTTATCCATCAAGCCTCA+AGG + tig0020858:117648-117667 None:intergenic 45.0%
!! CGAGTTTTGATCCATCGGTA+AGG - tig0020858:117907-117926 Msa1386750:CDS 45.0%
ATCGGTAAGGTTGCTGCATT+GGG - tig0020858:117920-117939 Msa1386750:CDS 45.0%
GCAATTTGATCCCCAGTTAG+TGG - tig0020858:118517-118536 Msa1386750:CDS 45.0%
! CCGTGTCTTTTGCTACAACA+TGG - tig0020858:118775-118794 Msa1386750:intron 45.0%
GATGATTCAGCAAATGCTGC+AGG - tig0020858:118893-118912 Msa1386750:intron 45.0%
TCTCTTGATACGTTCGCAGA+TGG - tig0020858:118923-118942 Msa1386750:intron 45.0%
! AAACAGCTGAAGCACTACTC+AGG - tig0020858:119149-119168 Msa1386750:intron 45.0%
! AACAGCTGAAGCACTACTCA+GGG - tig0020858:119150-119169 Msa1386750:intron 45.0%
TACTCAGGGTTTGACAGGAA+AGG - tig0020858:119164-119183 Msa1386750:intron 45.0%
ACTCAGGGTTTGACAGGAAA+GGG - tig0020858:119165-119184 Msa1386750:intron 45.0%
TCCAGAGCTTGATCTTCATG+AGG - tig0020858:119721-119740 Msa1386750:intron 45.0%
CCAGAGCTTGATCTTCATGA+GGG - tig0020858:119722-119741 Msa1386750:intron 45.0%
! GCACTGATCACCTGAACATT+AGG + tig0020858:119764-119783 None:intergenic 45.0%
! ATCAGTGCTGAGTGCATCAA+TGG - tig0020858:119776-119795 Msa1386750:intron 45.0%
TTAGGAGTCAGAACTGTTGC+AGG + tig0020858:119803-119822 None:intergenic 45.0%
GCTCAGCTTAGTAAGTGCAA+AGG + tig0020858:119918-119937 None:intergenic 45.0%
CTCTTATTGCTGGACCTCAA+AGG + tig0020858:120049-120068 None:intergenic 45.0%
!! CTTTGAGGTCCAGCAATAAG+AGG - tig0020858:120047-120066 Msa1386750:intron 45.0%
GAGTACTCGGTAGCTGAAAA+GGG - tig0020858:120085-120104 Msa1386750:intron 45.0%
GTAGCTGAAAAGGGTTCTTC+TGG - tig0020858:120094-120113 Msa1386750:intron 45.0%
GGGTATTTCGGTACACCATT+TGG + tig0020858:120151-120170 None:intergenic 45.0%
TTAAAAGGCAGCTCAGGCTT+AGG + tig0020858:120223-120242 None:intergenic 45.0%
! TAAGCCTGAGCTGCCTTTTA+AGG - tig0020858:120222-120241 Msa1386750:intron 45.0%
TTGACCTTAAAAGGCAGCTC+AGG + tig0020858:120229-120248 None:intergenic 45.0%
ATAGTGGCATTAGAGGATGC+TGG - tig0020858:120275-120294 Msa1386750:intron 45.0%
!! CATAATGGACGCAGTAGATG+AGG - tig0020858:120354-120373 Msa1386750:intron 45.0%
AGATGAGGAGGAACATCTAG+AGG - tig0020858:120369-120388 Msa1386750:intron 45.0%
! GGTTTTGCTACTCTTTGTGC+AGG + tig0020858:120813-120832 None:intergenic 45.0%
AACCTGACAAACTGGGTATG+CGG - tig0020858:120829-120848 Msa1386750:intron 45.0%
! GCTGTTGATGCTTCTGAAAG+TGG - tig0020858:120972-120991 Msa1386750:intron 45.0%
! TTCTGAAAGTGGAACCTGTC+AGG - tig0020858:120983-121002 Msa1386750:intron 45.0%
TCTTTGGGCAAGACATCTCA+TGG - tig0020858:121223-121242 Msa1386750:intron 45.0%
! ATTAGCTTGAAACTTGGGGC+GGG + tig0020858:121390-121409 None:intergenic 45.0%
GCTAATTCTGCAGTGGTCAA+TGG - tig0020858:121404-121423 Msa1386750:intron 45.0%
GTGGTCAATGGATCTATGAC+TGG - tig0020858:121416-121435 Msa1386750:intron 45.0%
TCTTCATGAATGGCATGGAG+TGG + tig0020858:121572-121591 None:intergenic 45.0%
GATGTCCTCGTCTTCATGAA+TGG + tig0020858:121582-121601 None:intergenic 45.0%
! GGTAGTAGCAGTGATGATGA+TGG - tig0020858:121680-121699 Msa1386750:CDS 45.0%
!! GATGATGGCTCTGACAATGA+CGG - tig0020858:121695-121714 Msa1386750:CDS 45.0%
GAACCAAAACTTGATGCAGC+AGG - tig0020858:121794-121813 Msa1386750:five_prime_UTR 45.0%
!! AAATTAAATTATATATCTAT+TGG - tig0020858:120689-120708 Msa1386750:intron 5.0%
TGAAGTGGGGTTCAAGGCAA+TGG + tig0020858:116045-116064 None:intergenic 50.0%
GAACCCCACTTCACAAAACC+TGG - tig0020858:116052-116071 Msa1386750:three_prime_UTR 50.0%
! CATCTGGGTCGTTGTGGTTT+TGG - tig0020858:116290-116309 Msa1386750:three_prime_UTR 50.0%
!!! GTTGCTTTTGCTGTTGGTGG+CGG - tig0020858:116454-116473 Msa1386750:CDS 50.0%
GAGACATATGTCGGGGGATT+CGG - tig0020858:116593-116612 Msa1386750:CDS 50.0%
!! GATTCGGTGCTAGCTGTTGT+GGG - tig0020858:116609-116628 Msa1386750:CDS 50.0%
!! ATTCGGTGCTAGCTGTTGTG+GGG - tig0020858:116610-116629 Msa1386750:CDS 50.0%
! GGCTCAACCATTTGGTTTCG+AGG - tig0020858:116745-116764 Msa1386750:CDS 50.0%
CAATTGCGACTGCAATGCAG+TGG - tig0020858:117196-117215 Msa1386750:intron 50.0%
TTACGTGGTGGTTGCAGTTG+TGG - tig0020858:117234-117253 Msa1386750:CDS 50.0%
! TTTAGGGTTGAGCAACCACG+TGG - tig0020858:117324-117343 Msa1386750:CDS 50.0%
TAAAGGATACGGAGTGGTGG+GGG - tig0020858:117606-117625 Msa1386750:intron 50.0%
CTGGCAGCTACGGAAAGATT+AGG + tig0020858:117702-117721 None:intergenic 50.0%
CAATGCAGCAACCTTACCGA+TGG + tig0020858:117921-117940 None:intergenic 50.0%
CATCGGTAAGGTTGCTGCAT+TGG - tig0020858:117919-117938 Msa1386750:CDS 50.0%
! CCTCTCCTTTTAATGGGGCA+GGG - tig0020858:118282-118301 Msa1386750:CDS 50.0%
TGCAACCCTGCCCCATTAAA+AGG + tig0020858:118290-118309 None:intergenic 50.0%
ACTCTCCTCGATCCCTATAC+CGG - tig0020858:118318-118337 Msa1386750:CDS 50.0%
CATTGTTATGAGGGCTCCAC+CGG + tig0020858:118340-118359 None:intergenic 50.0%
TTCTCTGACAGGTACACTGC+TGG - tig0020858:118871-118890 Msa1386750:intron 50.0%
TTCAGCAAATGCTGCAGGAC+TGG - tig0020858:118898-118917 Msa1386750:intron 50.0%
TCAGCAAATGCTGCAGGACT+GGG - tig0020858:118899-118918 Msa1386750:intron 50.0%
AGCACTACTCAGGGTTTGAC+AGG - tig0020858:119159-119178 Msa1386750:intron 50.0%
AAAGTACGGTGGTTTCACCG+TGG - tig0020858:119677-119696 Msa1386750:intron 50.0%
CATGCTTGACTTCCTGACCA+CGG + tig0020858:119697-119716 None:intergenic 50.0%
CCCTCATGAAGATCAAGCTC+TGG + tig0020858:119725-119744 None:intergenic 50.0%
GCTTGATCTTCATGAGGGTG+AGG - tig0020858:119727-119746 Msa1386750:intron 50.0%
! GGACAGTCCGCCTTTCTTTT+GGG + tig0020858:119989-120008 None:intergenic 50.0%
! GGAGTACTCGGTAGCTGAAA+AGG - tig0020858:120084-120103 Msa1386750:intron 50.0%
AATGGACGCAGTAGATGAGG+AGG - tig0020858:120357-120376 Msa1386750:intron 50.0%
AAACTGGGTATGCGGTGTGA+CGG - tig0020858:120837-120856 Msa1386750:intron 50.0%
GGCGTGGTCGTACTAATAAG+CGG + tig0020858:120863-120882 None:intergenic 50.0%
TTAACAGATTCAGGAGGGCG+TGG + tig0020858:120879-120898 None:intergenic 50.0%
CGCCCTCCTGAATCTGTTAA+AGG - tig0020858:120879-120898 Msa1386750:intron 50.0%
TTTCGAGATTGGAGCAGCTG+TGG - tig0020858:120908-120927 Msa1386750:intron 50.0%
ACCTGTCAGGTTTATTCGCC+TGG - tig0020858:120996-121015 Msa1386750:intron 50.0%
ACCAGGCGAATAAACCTGAC+AGG + tig0020858:121000-121019 None:intergenic 50.0%
TGGCCGAAAAGAGAGACCTT+CGG - tig0020858:121282-121301 Msa1386750:intron 50.0%
ACCTTCGGATTTCCCAAGAC+TGG - tig0020858:121297-121316 Msa1386750:intron 50.0%
TCCAGTCTTGGGAAATCCGA+AGG + tig0020858:121301-121320 None:intergenic 50.0%
! TTAGCTTGAAACTTGGGGCG+GGG + tig0020858:121389-121408 None:intergenic 50.0%
TCATGAATGGCATGGAGTGG+TGG + tig0020858:121569-121588 None:intergenic 50.0%
CCTCGTCTTCATGAATGGCA+TGG + tig0020858:121577-121596 None:intergenic 50.0%
CCATGCCATTCATGAAGACG+AGG - tig0020858:121574-121593 Msa1386750:CDS 50.0%
!! ATCGACTCTGGTGGCTTTGA+TGG - tig0020858:121599-121618 Msa1386750:CDS 50.0%
GATGCTGATGCTGACAACAC+TGG - tig0020858:121722-121741 Msa1386750:CDS 50.0%
TGATGCTGACAACACTGGAG+AGG - tig0020858:121727-121746 Msa1386750:exon 50.0%
AGAGGACAGCGAGGAGAATT+TGG - tig0020858:121745-121764 Msa1386750:five_prime_UTR 50.0%
! CAGCGAGGAGAATTTGGTGA+TGG - tig0020858:121751-121770 Msa1386750:five_prime_UTR 50.0%
!! CGAGGAGAATTTGGTGATGG+AGG - tig0020858:121754-121773 Msa1386750:five_prime_UTR 50.0%
! GCTCCTGCTGCATCAAGTTT+TGG + tig0020858:121800-121819 None:intergenic 50.0%
TGATGCAGCAGGAGCAATAC+AGG - tig0020858:121805-121824 Msa1386750:five_prime_UTR 50.0%
! ATCGAGGAGTTTAGCTCCCA+AGG - tig0020858:122124-122143 Msa1386750:five_prime_UTR 50.0%
! TCGAGGAGTTTAGCTCCCAA+GGG - tig0020858:122125-122144 Msa1386750:five_prime_UTR 50.0%
!!! GTGGCGGTGGTGGATTTTGA+AGG - tig0020858:116470-116489 Msa1386750:CDS 55.0%
!! GGATTCGGTGCTAGCTGTTG+TGG - tig0020858:116608-116627 Msa1386750:CDS 55.0%
TAGCTGTTGTGGGGACTGAG+AGG - tig0020858:116619-116638 Msa1386750:CDS 55.0%
TAAATGGAGGGCAAGGAGGG+AGG - tig0020858:116713-116732 Msa1386750:CDS 55.0%
CAAGGAGGGAGGTTGTTGAC+TGG - tig0020858:116724-116743 Msa1386750:CDS 55.0%
! GCCTCTCCTTTTAATGGGGC+AGG - tig0020858:118281-118300 Msa1386750:CDS 55.0%
CCCTGCCCCATTAAAAGGAG+AGG + tig0020858:118285-118304 None:intergenic 55.0%
ATGAGGGCTCCACCGGTATA+GGG + tig0020858:118333-118352 None:intergenic 55.0%
TATGAGGGCTCCACCGGTAT+AGG + tig0020858:118334-118353 None:intergenic 55.0%
CGGTGGAGCCCTCATAACAA+TGG - tig0020858:118338-118357 Msa1386750:CDS 55.0%
GATCCCCAGTTAGTGGGATG+AGG - tig0020858:118524-118543 Msa1386750:CDS 55.0%
CAGCCTCATCCCACTAACTG+GGG + tig0020858:118530-118549 None:intergenic 55.0%
CCAGCCTCATCCCACTAACT+GGG + tig0020858:118531-118550 None:intergenic 55.0%
AAACAGGGCCCAACAATGCG+TGG + tig0020858:119244-119263 None:intergenic 55.0%
ACGCATTGTTGGGCCCTGTT+TGG - tig0020858:119243-119262 Msa1386750:intron 55.0%
! CGGACAGTCCGCCTTTCTTT+TGG + tig0020858:119990-120009 None:intergenic 55.0%
CACCGCATACCCAGTTTGTC+AGG + tig0020858:120834-120853 None:intergenic 55.0%
TAGCTTGAAACTTGGGGCGG+GGG + tig0020858:121388-121407 None:intergenic 55.0%
!! GAAGACGAGGACATCGACTC+TGG - tig0020858:121587-121606 Msa1386750:CDS 55.0%
!!! GCTTTTGCTGTTGGTGGCGG+TGG - tig0020858:116457-116476 Msa1386750:CDS 60.0%
!! TTTGCTGTTGGTGGCGGTGG+TGG - tig0020858:116460-116479 Msa1386750:CDS 60.0%
! TGGGGACTGAGAGGAGTGTG+AGG - tig0020858:116628-116647 Msa1386750:CDS 60.0%
CTCCTCGATCCCTATACCGG+TGG - tig0020858:118321-118340 Msa1386750:CDS 60.0%
CTCCACCGGTATAGGGATCG+AGG + tig0020858:118326-118345 None:intergenic 60.0%
CCCAGTTAGTGGGATGAGGC+TGG - tig0020858:118528-118547 Msa1386750:CDS 60.0%
GCCAGCCTCATCCCACTAAC+TGG + tig0020858:118532-118551 None:intergenic 60.0%
ACGGTGGTTTCACCGTGGTC+AGG - tig0020858:119682-119701 Msa1386750:intron 60.0%
TTGGAGCAGCTGTGGATGCC+TGG - tig0020858:120916-120935 Msa1386750:intron 60.0%
CAGCTGTGGATGCCTGGTGT+GGG - tig0020858:120922-120941 Msa1386750:intron 60.0%
AGCTGTGGATGCCTGGTGTG+GGG - tig0020858:120923-120942 Msa1386750:intron 60.0%
ATGCCTGGTGTGGGGATGGA+TGG - tig0020858:120931-120950 Msa1386750:intron 60.0%
CTGGTGTGGGGATGGATGGT+GGG - tig0020858:120935-120954 Msa1386750:intron 60.0%
AGCTTGAAACTTGGGGCGGG+GGG + tig0020858:121387-121406 None:intergenic 60.0%
!! GACGAGGACATCGACTCTGG+TGG - tig0020858:121590-121609 Msa1386750:CDS 60.0%
CAACACTGGAGAGGACAGCG+AGG - tig0020858:121736-121755 Msa1386750:exon 60.0%
GCAGCTGTGGATGCCTGGTG+TGG - tig0020858:120921-120940 Msa1386750:intron 65.0%
GTGGATGCCTGGTGTGGGGA+TGG - tig0020858:120927-120946 Msa1386750:intron 65.0%
CCACCATCCATCCCCACACC+AGG + tig0020858:120937-120956 None:intergenic 65.0%
CCTGGTGTGGGGATGGATGG+TGG - tig0020858:120934-120953 Msa1386750:intron 65.0%
GCTTGAAACTTGGGGCGGGG+GGG + tig0020858:121386-121405 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0020858 gene 115883 122361 115883 ID=Msa1386750;Name=Msa1386750
tig0020858 mRNA 115883 122361 115883 ID=Msa1386750-mRNA-1;Parent=Msa1386750;Name=Msa1386750-mRNA-1;_AED=0.03;_eAED=0.03;_QI=618|0.6|0.66|1|1|1|6|526|656
tig0020858 exon 115883 116980 115883 ID=Msa1386750-mRNA-1:exon:10340;Parent=Msa1386750-mRNA-1
tig0020858 exon 117227 117443 117227 ID=Msa1386750-mRNA-1:exon:10339;Parent=Msa1386750-mRNA-1
tig0020858 exon 117905 118663 117905 ID=Msa1386750-mRNA-1:exon:10338;Parent=Msa1386750-mRNA-1
tig0020858 exon 119126 119161 119126 ID=Msa1386750-mRNA-1:exon:10337;Parent=Msa1386750-mRNA-1
tig0020858 exon 119262 119362 119262 ID=Msa1386750-mRNA-1:exon:10336;Parent=Msa1386750-mRNA-1
tig0020858 exon 121458 122361 121458 ID=Msa1386750-mRNA-1:exon:10335;Parent=Msa1386750-mRNA-1
tig0020858 five_prime_UTR 121744 122361 121744 ID=Msa1386750-mRNA-1:five_prime_utr;Parent=Msa1386750-mRNA-1
tig0020858 CDS 121458 121743 121458 ID=Msa1386750-mRNA-1:cds;Parent=Msa1386750-mRNA-1
tig0020858 CDS 119262 119362 119262 ID=Msa1386750-mRNA-1:cds;Parent=Msa1386750-mRNA-1
tig0020858 CDS 119126 119161 119126 ID=Msa1386750-mRNA-1:cds;Parent=Msa1386750-mRNA-1
tig0020858 CDS 117905 118663 117905 ID=Msa1386750-mRNA-1:cds;Parent=Msa1386750-mRNA-1
tig0020858 CDS 117227 117443 117227 ID=Msa1386750-mRNA-1:cds;Parent=Msa1386750-mRNA-1
tig0020858 CDS 116409 116980 116409 ID=Msa1386750-mRNA-1:cds;Parent=Msa1386750-mRNA-1
tig0020858 three_prime_UTR 115883 116408 115883 ID=Msa1386750-mRNA-1:three_prime_utr;Parent=Msa1386750-mRNA-1
Gene Sequence

>Msa1386750

ATGTCAGGTGATGAGGTTGATGCTGTTTTTGTGTCATGGGAGGAGCAAGTGATATGTCAAGAGCGTGGGAACCGCGTGATTCATTTTTACTTGAGACATATGTCGGGGGATTCGGTGCTAGCTGTTGTGGGGACTGAGAGGAGTGTGAGGCACATGATGTATGTTGTTCCTCAACAATTTTTGATGGATTATGGATCTACTAACGTTGTTTATAAATGGAGGGCAAGGAGGGAGGTTGTTGACTGGCTCAACCATTTGGTTTCGAGGAATCTATCGCACCGTAATGGTACACTGCTGGATGATTCAGCAAATGCTGCAGGACTGGGCTCTCTTGATACGTTCGCAGATGGAATCAATGCTAATAACAGAAAAATACCTGATAAACTGATTTCTAAGAAGCCGAACATTCAAAGTTCAGATATTGTTCATTCATTTGTGTATATTATGGCTGAAGAGGAAAATCACTATCTCGGTTACTTGGAAGATATGTATGAAGACAAAAAGAAACAAAAAAGGGTGAAAGTACGGTGGTTTCACCGTGGTCAGGAAGTCAAGCATGTGATTCCAGAGCTTGATCTTCATGAGGGTGAGGTTTTCATCACACCTAATGTTCAGGTGATCAGTGCTGAGTGCATCAATGGTCCTGCAACAGTTCTGACTCCTAAGCATTACGAGAAATACAAAGCTGAGTTGCTGCGTACCTCTTCATCTGAGATCCATGTATGTTCTAGGCAGCTTAAAAATAATAAGCTGAAACCCTTTGCACTTACTAAGCTGAGCGGTTATAGTAACCAGCCTATACTTTCTGGTTTGAATTGCCCTATTCTTCCCAAAAGAAAGGCGGACTGTCCGAAATTTGAAGATGGTGGGAACTTCACTCAAGATGATCCTTTGAGGTCCAGCAATAAGAGGAATAGAAGTTCTGTGGAGTACTCGGTAGCTGAAAAGGGTTCTTCTGGTCTGCAAAACTCTTTTCTTATGAATGAGATGCCAAATGGTGTACCGAAATACCCGAGTCTGAAACTAAAACTGTCAAGAAATACAATGGGTAAGGGTATCGAACCTAAGCCTGAGCTGCCTTTTAAGGTCAATGATAAGGTAGAGTTTCTCTCTCAAGATAGTGGCATTAGAGGATGCTGGTTTAGATGTACAATCTTGTATGCATCTCATAAGAAGCTCAAGGAATGGATCCCTGCACAAAGAGTAGCAAAACCTGACAAACTGGGTATGCGGTGTGACGGCCGCTTATTAGTACGACCACGCCCTCCTGAATCTGTTAAAGGTTGTACTTTCGAGATTGGAGCAGCTGTGGATGCCTGGTGTGGGGATGGATGGTGGGAAAGTATTATAACTGCTGTTGATGCTTCTGAAAGTGGAACCTGTCAGGTTTATTCGCCTGGTGAAGAGAAGTTTTTATTGGCCGAAAAGAGAGACCTTCGGATTTCCCAAGACTGGATTGATAACATGTGGGTTAATATATTGGGAAAGCCGGACATTTGCAGCTTTTTATCTTCAAATCCCCCCCGCCCCAAGTTTCAAGCTAATTCTGCAGTGGTCAATGGATCTATGACTGGCAGTTCTGCAACATCTGAAAGTAAATCGCCACCAATCGCTAAAGTTGAAGTTGCTCCAAAGGTTGAGCAAAAATCATCTGGTTTGGAAGAACTTAATGGCGGTATGAAGAGAATGACTTTGTGGAAACCACCACTCCATGCCATTCATGAAGACGAGGACATCGACTCTGGTGGCTTTGATGGTGATACTGAGACTGACAATGTTGTTGATGCGTTTGATAAAGACAAGGATTGTAACTCTGGTAGTAGCAGTGATGATGATGGCTCTGACAATGACGGTGATGATGCTGATGCTGACAACACTGGAGAGGACAGCGAGGAGAATTTGGTGATGGAGGAAAAAATTGGTCGTTCTGAACCAAAACTTGATGCAGCAGGAGCAATACAGGTTACATGA
Protein sequence

>Msa1386750

MSGDEVDAVFVSWEEQVICQERGNRVIHFYLRHMSGDSVLAVVGTERSVRHMMYVVPQQFLMDYGSTNVVYKWRARREVVDWLNHLVSRNLSHRNGTLLDDSANAAGLGSLDTFADGINANNRKIPDKLISKKPNIQSSDIVHSFVYIMAEEENHYLGYLEDMYEDKKKQKRVKVRWFHRGQEVKHVIPELDLHEGEVFITPNVQVISAECINGPATVLTPKHYEKYKAELLRTSSSEIHVCSRQLKNNKLKPFALTKLSGYSNQPILSGLNCPILPKRKADCPKFEDGGNFTQDDPLRSSNKRNRSSVEYSVAEKGSSGLQNSFLMNEMPNGVPKYPSLKLKLSRNTMGKGIEPKPELPFKVNDKVEFLSQDSGIRGCWFRCTILYASHKKLKEWIPAQRVAKPDKLGMRCDGRLLVRPRPPESVKGCTFEIGAAVDAWCGDGWWESIITAVDASESGTCQVYSPGEEKFLLAEKRDLRISQDWIDNMWVNILGKPDICSFLSSNPPRPKFQANSAVVNGSMTGSSATSESKSPPIAKVEVAPKVEQKSSGLEELNGGMKRMTLWKPPLHAIHEDEDIDSGGFDGDTETDNVVDAFDKDKDCNSGSSSDDDGSDNDGDDADADNTGEDSEENLVMEEKIGRSEPKLDAAGAIQVT*