AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0970060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970060 MtrunA17_Chr6g0448921 96.875 256 8 0 18 273 505 760 1.85e-174 500
Msa0970060 MtrunA17_Chr2g0281451 53.333 165 77 0 106 270 945 1109 1.23e-46 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970060 AT5G08390.1 52.675 243 111 2 35 273 596 838 6.14e-68 225
Msa0970060 AT5G23430.1 53.659 246 110 2 32 273 591 836 5.44e-65 218
Msa0970060 AT5G23430.3 53.252 246 110 3 32 273 591 835 1.53e-62 211
Msa0970060 AT5G23430.2 53.252 246 110 3 32 273 591 835 1.53e-62 211
Msa0970060 AT1G61210.1 49.383 162 82 0 109 270 1018 1179 4.51e-45 162
Msa0970060 AT1G11160.1 48.235 170 88 0 102 271 851 1020 4.93e-45 162
Msa0970060 AT1G11160.2 48.235 170 88 0 102 271 849 1018 5.17e-45 162
Msa0970060 AT1G61210.2 49.383 162 82 0 109 270 1016 1177 5.36e-45 162
Msa0970060 AT1G11160.3 48.235 170 88 0 102 271 807 976 5.55e-45 162
Msa0970060 AT1G61210.3 49.383 162 82 0 109 270 914 1075 7.76e-45 162
Msa0970060 AT1G11160.4 46.711 152 81 0 102 253 849 1000 1.61e-37 140

Find 91 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTCTATTGCTGATTTAA+TGG 0.170068 6_4:-1486628 Msa0970060:CDS
ATCCATCTCTGTTCAGTTTC+TGG 0.177016 6_4:+1488113 None:intergenic
CGTCAACAACTAACCTAATA+TGG 0.183816 6_4:-1483958 Msa0970060:three_prime_UTR
TTGAACCTGGTCAGAGTATT+TGG 0.252786 6_4:-1484991 Msa0970060:CDS
TAGTAGCATTGTCCCATATT+AGG 0.272260 6_4:+1483945 None:intergenic
CGGTAACTATTATATTACTA+TGG 0.299714 6_4:-1483781 Msa0970060:three_prime_UTR
CAAAGCTCTTCAAAATGTTA+TGG 0.310115 6_4:-1488427 Msa0970060:CDS
CGAGTTGAATCTGGCACTTC+AGG 0.312564 6_4:-1484324 Msa0970060:CDS
TTGTGCTGATGGCTTCTCTT+TGG 0.321035 6_4:-1488397 Msa0970060:CDS
TGTGGCCTTCTCAGTGGATA+TGG 0.331053 6_4:+1486668 None:intergenic
AAAGCTCTTCAAAATGTTAT+GGG 0.405431 6_4:-1488426 Msa0970060:CDS
AATCTTGTTATTATAACAAA+AGG 0.415545 6_4:-1483669 Msa0970060:three_prime_UTR
ATCTGCACACGAGTTGAATC+TGG 0.417698 6_4:-1484333 Msa0970060:CDS
TTCATGTGCTTCCTTTCAGT+GGG 0.418710 6_4:-1487886 Msa0970060:CDS
TGATGTTGTTAGCATTATAA+TGG 0.425724 6_4:-1485419 Msa0970060:CDS
ATGATTTCTTTCAATGCCTT+CGG 0.430819 6_4:-1483801 Msa0970060:three_prime_UTR
TATAATGGAGAAAATTGATA+TGG 0.431528 6_4:-1485404 Msa0970060:CDS
CATTAGCACGATGGCAAAGA+TGG 0.434176 6_4:-1485612 Msa0970060:CDS
CACTTCTCACTTTGGAAAAG+AGG 0.435437 6_4:-1487970 Msa0970060:CDS
GCAAGGCATATAATAGTTAC+CGG 0.440214 6_4:+1483714 None:intergenic
TAACAGAGAGAAATATGAAC+GGG 0.442038 6_4:+1483835 None:intergenic
TATCCATTTCACTTTGCAAA+AGG 0.445351 6_4:+1485338 None:intergenic
AATGCGCTCACTTCTCACTT+TGG 0.468567 6_4:-1487978 Msa0970060:CDS
TCAGGTTGTCTTCAGACGTT+GGG 0.469042 6_4:-1485657 Msa0970060:intron
ATGGGAAACTGTTGTGCTGA+TGG 0.469214 6_4:-1488408 Msa0970060:CDS
CGTGGAAATGTTATTGAACC+TGG 0.471889 6_4:-1485004 Msa0970060:CDS
CATATTAGGTTAGTTGTTGA+CGG 0.473903 6_4:+1483959 None:intergenic
GTTCATGTGCTTCCTTTCAG+TGG 0.486951 6_4:-1487887 Msa0970060:CDS
TTGATATTGAAGCAGAGAAA+AGG 0.488918 6_4:-1484924 Msa0970060:intron
GTCTTGTGACAGATGAAGGC+GGG 0.490913 6_4:-1488138 Msa0970060:intron
ATATTAGGTTAGTTGTTGAC+GGG 0.506571 6_4:+1483960 None:intergenic
GTCAACAACTAACCTAATAT+GGG 0.507617 6_4:-1483957 Msa0970060:three_prime_UTR
GAACCGTTCATCCAAGTTGA+AGG 0.509048 6_4:-1486574 Msa0970060:intron
TTCAATATCAACACCAACAG+AGG 0.510562 6_4:+1484936 None:intergenic
TCTTGCTGCTCAAGTTACAT+TGG 0.511413 6_4:-1484270 Msa0970060:three_prime_UTR
ACATCAGCTCAACTCAGCTC+TGG 0.517777 6_4:+1484054 None:intergenic
TTCAGGTTGTCTTCAGACGT+TGG 0.525512 6_4:-1485658 Msa0970060:intron
CTTGCTTGATACAAATGGCT+AGG 0.528751 6_4:-1488457 None:intergenic
CCATGAGAAATTCTGTGTCT+AGG 0.531227 6_4:+1487923 None:intergenic
AGTTACATTGGTGCCTGTAG+AGG 0.535181 6_4:-1484258 Msa0970060:three_prime_UTR
CCTTTCATCTATAGAAGAGG+AGG 0.535391 6_4:-1484368 Msa0970060:intron
GTCACACTTGACTTATGTAC+AGG 0.545071 6_4:-1485382 Msa0970060:CDS
AGTCATCAATACCTTCAACT+TGG 0.549279 6_4:+1486563 None:intergenic
CAAAACTAATCTATCAGCAA+AGG 0.552395 6_4:+1484021 None:intergenic
CATTTCACTTTGCAAAAGGT+CGG 0.553812 6_4:+1485342 None:intergenic
TTCTGTTTATAAGCTTAATG+TGG 0.556126 6_4:-1483993 Msa0970060:three_prime_UTR
ACTTCTCACTTTGGAAAAGA+GGG 0.557684 6_4:-1487969 Msa0970060:CDS
CTTGTTATTATAACAAAAGG+AGG 0.566976 6_4:-1483666 Msa0970060:three_prime_UTR
AAAACTAATCTATCAGCAAA+GGG 0.569619 6_4:+1484022 None:intergenic
ATACAATCACGCCTAACCTA+AGG 0.569752 6_4:+1483869 None:intergenic
GGCCAGAAACTGAACAGAGA+TGG 0.570415 6_4:-1488115 Msa0970060:CDS
TCTTGTGACAGATGAAGGCG+GGG 0.571492 6_4:-1488137 Msa0970060:intron
ATTAGCACGATGGCAAAGAT+GGG 0.575800 6_4:-1485611 Msa0970060:CDS
CTATCAGCTAAACCCTCTGT+TGG 0.576290 6_4:-1484949 Msa0970060:CDS
CTGAACCAAATACTCTGACC+AGG 0.577894 6_4:+1484986 None:intergenic
CAGTATAGTACCCCACTGAA+AGG 0.580226 6_4:+1487875 None:intergenic
CCTAGACACAGAATTTCTCA+TGG 0.588437 6_4:-1487923 Msa0970060:CDS
CAGGTTCAATAACATTTCCA+CGG 0.589296 6_4:+1485005 None:intergenic
ATACCTTCAACTTGGATGAA+CGG 0.589985 6_4:+1486571 None:intergenic
TGCAAAAGGTCGGTAAGAAG+TGG 0.595122 6_4:+1485352 None:intergenic
ATGAATCGACAACTTTGTCC+CGG 0.597331 6_4:-1483733 Msa0970060:three_prime_UTR
GTTTCCTACCTTCTCTGATG+AGG 0.600412 6_4:-1484770 Msa0970060:intron
GACACAGAATTTCTCATGGG+AGG 0.608414 6_4:-1487919 Msa0970060:CDS
AACTATTATATGCCTTGCGG+TGG 0.609819 6_4:-1483709 Msa0970060:three_prime_UTR
ACATTCCATATCCACTGAGA+AGG 0.620300 6_4:-1486673 Msa0970060:CDS
TTGCTTGATACAAATGGCTA+GGG 0.620401 6_4:-1488456 None:intergenic
AACATGTACCTCATCAGAGA+AGG 0.621499 6_4:+1484762 None:intergenic
CTAATTCTTCAACATACACA+CGG 0.631656 6_4:-1484080 Msa0970060:three_prime_UTR
TGTACCTCATCAGAGAAGGT+AGG 0.639478 6_4:+1484766 None:intergenic
TCAATATCAACACCAACAGA+GGG 0.642194 6_4:+1484937 None:intergenic
AATAAAACAAGGCCACCGCA+AGG 0.643219 6_4:+1483697 None:intergenic
GGAAAGAAATGATGTTACAG+AGG 0.650052 6_4:-1485636 Msa0970060:CDS
TAGACATCTATCTATATCCG+TGG 0.651017 6_4:-1485022 Msa0970060:CDS
GTAACAGAGAGAAATATGAA+CGG 0.652522 6_4:+1483834 None:intergenic
TCATGTGCTTCCTTTCAGTG+GGG 0.652570 6_4:-1487885 Msa0970060:intron
CTAGACACAGAATTTCTCAT+GGG 0.652893 6_4:-1487922 Msa0970060:CDS
TCAAGAGTGATGATGACAAG+TGG 0.653158 6_4:-1484125 Msa0970060:three_prime_UTR
CAAGGCATATAATAGTTACC+GGG 0.654622 6_4:+1483715 None:intergenic
AAAGGAAGCACATGAACTGA+TGG 0.660400 6_4:+1487893 None:intergenic
AGAGTGATGATGACAAGTGG+CGG 0.662047 6_4:-1484122 Msa0970060:three_prime_UTR
AGTAATATAATAGTTACCGA+AGG 0.662872 6_4:+1483785 None:intergenic
AAGATTAATAAAATAAAACA+AGG 0.668425 6_4:+1483686 None:intergenic
ATTAGTGTCGTATATAACGT+AGG 0.674829 6_4:-1483758 Msa0970060:three_prime_UTR
TTCATCGCTAGCAGAAACTG+TGG 0.675065 6_4:+1486650 None:intergenic
CTTGTGACAGATGAAGGCGG+GGG 0.677463 6_4:-1488136 Msa0970060:intron
TGTCTTGTGACAGATGAAGG+CGG 0.677742 6_4:-1488139 Msa0970060:intron
GGTAACTATTATATGCCTTG+CGG 0.685764 6_4:-1483712 Msa0970060:three_prime_UTR
AGAAACTGTGGCCTTCTCAG+TGG 0.693092 6_4:+1486662 None:intergenic
TACAGAGGTCATTAGCACGA+TGG 0.700017 6_4:-1485621 Msa0970060:CDS
TCTATTGAAGTACAGAAACG+AGG 0.753821 6_4:-1488088 Msa0970060:intron
AACAGAGAGAAATATGAACG+GGG 0.759594 6_4:+1483836 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTTTTTCAAATTTAAT+AGG - chr6_4:1485159-1485178 Msa0970060:intron 10.0%
!!! AGTATTTTATTTTATAGATT+CGG - chr6_4:1487026-1487045 Msa0970060:intron 10.0%
!! AAATTAATTAAATTGTGTAA+TGG + chr6_4:1487247-1487266 None:intergenic 10.0%
!! AAGATTAATAAAATAAAACA+AGG + chr6_4:1488422-1488441 None:intergenic 10.0%
!! ATCATTATAACATAATAACA+AGG + chr6_4:1483871-1483890 None:intergenic 15.0%
!! TTATGCTCTTTAAATTATAT+AGG - chr6_4:1484101-1484120 Msa0970060:three_prime_UTR 15.0%
!! TATGCTCTTTAAATTATATA+GGG - chr6_4:1484102-1484121 Msa0970060:three_prime_UTR 15.0%
!! TCTGATAATATCAAAATATT+TGG + chr6_4:1484541-1484560 None:intergenic 15.0%
!! CTTATTGAATAAAATTCATA+CGG - chr6_4:1484852-1484871 Msa0970060:intron 15.0%
!! TTATTGAATAAAATTCATAC+GGG - chr6_4:1484853-1484872 Msa0970060:intron 15.0%
!! TATTAACATGTAACAAATAT+TGG + chr6_4:1485266-1485285 None:intergenic 15.0%
!!! ACTTTTTATTACTTTTGTAT+TGG - chr6_4:1485606-1485625 Msa0970060:CDS 15.0%
!! TATCATAAAAGAAAAGAAAA+AGG + chr6_4:1485730-1485749 None:intergenic 15.0%
!! AAATAATGATTAATGATGTA+TGG - chr6_4:1485995-1486014 Msa0970060:intron 15.0%
!!! TTTTAAGCTATAATATAAAG+CGG + chr6_4:1486245-1486264 None:intergenic 15.0%
!!! GAACAATTTAAATGTAATTT+TGG - chr6_4:1486367-1486386 Msa0970060:intron 15.0%
!! GTTATATGATTAGATAAAAA+AGG - chr6_4:1487541-1487560 Msa0970060:intron 15.0%
!!! AATCTTGTTATTATAACAAA+AGG - chr6_4:1488436-1488455 Msa0970060:CDS 15.0%
!! TAATCTTATGTGAATTAACA+AGG - chr6_4:1483751-1483770 Msa0970060:three_prime_UTR 20.0%
!! ATGTTATAATGATTGATTGT+TGG - chr6_4:1483878-1483897 Msa0970060:three_prime_UTR 20.0%
!! TGTTATAATGATTGATTGTT+GGG - chr6_4:1483879-1483898 Msa0970060:three_prime_UTR 20.0%
!! AATATCAAAATATTTGGACT+TGG + chr6_4:1484535-1484554 None:intergenic 20.0%
!!! CTTTTGTTATAAACAAAGTT+CGG + chr6_4:1484797-1484816 None:intergenic 20.0%
!! TTTATTCAATAAGAGAGAAA+GGG + chr6_4:1484845-1484864 None:intergenic 20.0%
!!! TTTTATTCAATAAGAGAGAA+AGG + chr6_4:1484846-1484865 None:intergenic 20.0%
!! TTATTGGATGAAATTAATGT+AGG + chr6_4:1484922-1484941 None:intergenic 20.0%
!!! TTGTTTTCAAAGATTTGTAT+AGG + chr6_4:1485113-1485132 None:intergenic 20.0%
!! AAAAGTAATAAAAAGTTCCA+AGG + chr6_4:1485602-1485621 None:intergenic 20.0%
!!! TTTCTTTTATGATATCTGAT+AGG - chr6_4:1485736-1485755 Msa0970060:intron 20.0%
!!! TTCTTTTATGATATCTGATA+GGG - chr6_4:1485737-1485756 Msa0970060:intron 20.0%
!! AATGTATCTGTTGAAATTAT+AGG - chr6_4:1485797-1485816 Msa0970060:intron 20.0%
!! TGTTGAAATTATAGGAATTT+AGG - chr6_4:1485805-1485824 Msa0970060:intron 20.0%
!!! TTTTGAAACCATTATATTTC+AGG - chr6_4:1486430-1486449 Msa0970060:intron 20.0%
!!! AATTTTTGTGTTCTCTTTTA+TGG - chr6_4:1486570-1486589 Msa0970060:intron 20.0%
!! AACTTAATTGTATTTATTCC+AGG - chr6_4:1486656-1486675 Msa0970060:CDS 20.0%
!!! TATAATGGAGAAAATTGATA+TGG - chr6_4:1486701-1486720 Msa0970060:intron 20.0%
!!! TCTCTTTTACTGTTATAATA+AGG - chr6_4:1486801-1486820 Msa0970060:intron 20.0%
!!! TGTTTTTTATTTTATGCGAT+TGG - chr6_4:1487425-1487444 Msa0970060:intron 20.0%
!! TAATCAGGAAATAATGTATT+AGG - chr6_4:1487675-1487694 Msa0970060:intron 20.0%
! AAAGCTCTTCAAAATGTTAT+GGG - chr6_4:1483679-1483698 Msa0970060:three_prime_UTR 25.0%
! ATAACATAATAACAAGGTCA+GGG + chr6_4:1483865-1483884 None:intergenic 25.0%
! TATAACATAATAACAAGGTC+AGG + chr6_4:1483866-1483885 None:intergenic 25.0%
! TTCTACTTCTATTAGATTTG+AGG - chr6_4:1484291-1484310 Msa0970060:three_prime_UTR 25.0%
! CAGAAAATTCACTTTAATTG+CGG - chr6_4:1484318-1484337 Msa0970060:CDS 25.0%
! GTCATATTTCAAGACAATTA+AGG + chr6_4:1484445-1484464 None:intergenic 25.0%
! TCCAATAAGATATAATGTGT+TGG - chr6_4:1484934-1484953 Msa0970060:CDS 25.0%
! TCCAACACATTATATCTTAT+TGG + chr6_4:1484938-1484957 None:intergenic 25.0%
! ACAATGTATTGTCAAATGTA+GGG + chr6_4:1485191-1485210 None:intergenic 25.0%
! TGTTTGATGCAATTATATTG+AGG - chr6_4:1485336-1485355 Msa0970060:intron 25.0%
!!! AGATTCTATTGCTGATTTAA+TGG - chr6_4:1485477-1485496 Msa0970060:intron 25.0%
!! TCTTTTATGATATCTGATAG+GGG - chr6_4:1485738-1485757 Msa0970060:intron 25.0%
! TGAAATTATAGGAATTTAGG+TGG - chr6_4:1485808-1485827 Msa0970060:intron 25.0%
! GAAATTATAGGAATTTAGGT+GGG - chr6_4:1485809-1485828 Msa0970060:intron 25.0%
!!! GAATATTTTCAAGAGTATCT+TGG + chr6_4:1486050-1486069 None:intergenic 25.0%
! TTTGTGATTTATACTGTAAG+AGG + chr6_4:1486097-1486116 None:intergenic 25.0%
! AGTATAAATCACAAACAAAC+TGG - chr6_4:1486102-1486121 Msa0970060:intron 25.0%
!!! CTTGACTAAAGATTTTTTGA+AGG + chr6_4:1486200-1486219 None:intergenic 25.0%
! AGAGCTAAATATTTGATGTT+TGG + chr6_4:1486270-1486289 None:intergenic 25.0%
! ACATTTAAATTGTTCTCTAG+AGG + chr6_4:1486362-1486381 None:intergenic 25.0%
! AAATTCAGCAAATCTTTGAA+TGG + chr6_4:1486413-1486432 None:intergenic 25.0%
! TGATGTTGTTAGCATTATAA+TGG - chr6_4:1486686-1486705 Msa0970060:intron 25.0%
! TTATCAAAGTAGGAGAAAAT+GGG - chr6_4:1486893-1486912 Msa0970060:intron 25.0%
!!! TTGCGATTTCTTTATTTTTG+AGG - chr6_4:1486951-1486970 Msa0970060:intron 25.0%
! CAATTTAGTCTCAAAATTGA+AGG + chr6_4:1486992-1487011 None:intergenic 25.0%
!! TTTTATTGTTAATGAGATCC+AGG - chr6_4:1487266-1487285 Msa0970060:intron 25.0%
! ATTTAATACTAGCATGCATA+TGG - chr6_4:1487462-1487481 Msa0970060:intron 25.0%
! TTTAATACTAGCATGCATAT+GGG - chr6_4:1487463-1487482 Msa0970060:intron 25.0%
! AATTTAGCTATGCTAAAACT+TGG - chr6_4:1487591-1487610 Msa0970060:intron 25.0%
! ACTTTGTGCTAAAAATAATC+AGG - chr6_4:1487660-1487679 Msa0970060:intron 25.0%
! AAAACTAATCTATCAGCAAA+GGG + chr6_4:1488086-1488105 None:intergenic 25.0%
! TTCTGTTTATAAGCTTAATG+TGG - chr6_4:1488112-1488131 Msa0970060:CDS 25.0%
!!! ATTTATTGTTTTAGTGCCTT+AGG - chr6_4:1488220-1488239 Msa0970060:intron 25.0%
! AGTAATATAATAGTTACCGA+AGG + chr6_4:1488323-1488342 None:intergenic 25.0%
! CGGTAACTATTATATTACTA+TGG - chr6_4:1488324-1488343 Msa0970060:intron 25.0%
!!! CTTGTTATTATAACAAAAGG+AGG - chr6_4:1488439-1488458 Msa0970060:CDS 25.0%
CAAAGCTCTTCAAAATGTTA+TGG - chr6_4:1483678-1483697 Msa0970060:three_prime_UTR 30.0%
TAACATAATAACAAGGTCAG+GGG + chr6_4:1483864-1483883 None:intergenic 30.0%
! AAATCTTTTGTTCTCTTGGA+TGG - chr6_4:1483923-1483942 Msa0970060:three_prime_UTR 30.0%
! TACAACATCTTTTGTGTGTT+GGG - chr6_4:1484400-1484419 Msa0970060:intron 30.0%
AATAGGAAACAGTGAAAACA+AGG + chr6_4:1485028-1485047 None:intergenic 30.0%
TCACTGTTTCCTATTCTTAA+AGG - chr6_4:1485033-1485052 Msa0970060:intron 30.0%
CACTGTTTCCTATTCTTAAA+GGG - chr6_4:1485034-1485053 Msa0970060:intron 30.0%
GACAATGTATTGTCAAATGT+AGG + chr6_4:1485192-1485211 None:intergenic 30.0%
AACATGTAACAAATATTGGC+AGG + chr6_4:1485262-1485281 None:intergenic 30.0%
AATACAGTTGTGTTGAACTT+TGG - chr6_4:1485285-1485304 Msa0970060:intron 30.0%
! GTTGAACTTTGGAAAATTCA+CGG - chr6_4:1485296-1485315 Msa0970060:intron 30.0%
TTGATGCAATTATATTGAGG+AGG - chr6_4:1485339-1485358 Msa0970060:CDS 30.0%
GTTACTTGTATAATGAGTCT+TGG - chr6_4:1485635-1485654 Msa0970060:CDS 30.0%
ATATTAAACGCCAAACAAGT+TGG - chr6_4:1485662-1485681 Msa0970060:intron 30.0%
AAAAGAAAAGAAAAAGGACG+CGG + chr6_4:1485724-1485743 None:intergenic 30.0%
TTAGTAGAGAAGAACAAGAT+CGG - chr6_4:1485769-1485788 Msa0970060:intron 30.0%
!!! ATTTTCAAGAGTATCTTGGA+TGG + chr6_4:1486046-1486065 None:intergenic 30.0%
!! CATCAAATATTTAGCTCTGA+AGG - chr6_4:1486272-1486291 Msa0970060:intron 30.0%
GAAGACAACCTGAAATATAA+TGG + chr6_4:1486441-1486460 None:intergenic 30.0%
TATCCATTTCACTTTGCAAA+AGG + chr6_4:1486770-1486789 None:intergenic 30.0%
! TTTTGCAAAGTGAAATGGAT+AGG - chr6_4:1486769-1486788 Msa0970060:intron 30.0%
GTTATCAAAGTAGGAGAAAA+TGG - chr6_4:1486892-1486911 Msa0970060:intron 30.0%
AGTCTCAAAATTGAAGGTTT+GGG + chr6_4:1486986-1487005 None:intergenic 30.0%
TAGTCTCAAAATTGAAGGTT+TGG + chr6_4:1486987-1487006 None:intergenic 30.0%
TTGATATTGAAGCAGAGAAA+AGG - chr6_4:1487181-1487200 Msa0970060:intron 30.0%
AGAATTGACTGAAACAAAAG+GGG + chr6_4:1487377-1487396 None:intergenic 30.0%
CAGAATTGACTGAAACAAAA+GGG + chr6_4:1487378-1487397 None:intergenic 30.0%
TTAATACTAGCATGCATATG+GGG - chr6_4:1487464-1487483 Msa0970060:intron 30.0%
TAGATGAAAGGCAAATAAAG+TGG + chr6_4:1487728-1487747 None:intergenic 30.0%
CTAATTCTTCAACATACACA+CGG - chr6_4:1488025-1488044 Msa0970060:intron 30.0%
CAAAACTAATCTATCAGCAA+AGG + chr6_4:1488087-1488106 None:intergenic 30.0%
! ATATTAGGTTAGTTGTTGAC+GGG + chr6_4:1488148-1488167 None:intergenic 30.0%
! CATATTAGGTTAGTTGTTGA+CGG + chr6_4:1488149-1488168 None:intergenic 30.0%
GTCAACAACTAACCTAATAT+GGG - chr6_4:1488148-1488167 Msa0970060:intron 30.0%
TAACAGAGAGAAATATGAAC+GGG + chr6_4:1488273-1488292 None:intergenic 30.0%
GTAACAGAGAGAAATATGAA+CGG + chr6_4:1488274-1488293 None:intergenic 30.0%
ATGATTTCTTTCAATGCCTT+CGG - chr6_4:1488304-1488323 Msa0970060:intron 30.0%
ATTAGTGTCGTATATAACGT+AGG - chr6_4:1488347-1488366 Msa0970060:intron 30.0%
AGATTAAAACAGCTACATGC+AGG + chr6_4:1483737-1483756 None:intergenic 35.0%
TAACAAGGACAGTAAACACA+AGG - chr6_4:1483766-1483785 Msa0970060:three_prime_UTR 35.0%
!! TTTGGGACATTAGGTTGAAT+GGG + chr6_4:1483828-1483847 None:intergenic 35.0%
!!! TTTTGGGACATTAGGTTGAA+TGG + chr6_4:1483829-1483848 None:intergenic 35.0%
AACATAATAACAAGGTCAGG+GGG + chr6_4:1483863-1483882 None:intergenic 35.0%
! CTGGAAATCTTTTGTTCTCT+TGG - chr6_4:1483919-1483938 Msa0970060:three_prime_UTR 35.0%
TCTATTGAAGTACAGAAACG+AGG - chr6_4:1484017-1484036 Msa0970060:three_prime_UTR 35.0%
! ACTTCTCACTTTGGAAAAGA+GGG - chr6_4:1484136-1484155 Msa0970060:three_prime_UTR 35.0%
CTAGACACAGAATTTCTCAT+GGG - chr6_4:1484183-1484202 Msa0970060:three_prime_UTR 35.0%
! CTGTCTGTTATTGCCTTATT+GGG - chr6_4:1484350-1484369 Msa0970060:CDS 35.0%
! GTACAACATCTTTTGTGTGT+TGG - chr6_4:1484399-1484418 Msa0970060:intron 35.0%
TGACCTTTGTAGTGCTTATA+AGG - chr6_4:1484461-1484480 Msa0970060:intron 35.0%
! AAGCCTTATAAGCACTACAA+AGG + chr6_4:1484467-1484486 None:intergenic 35.0%
! CAACACATCCCTTTAAGAAT+AGG + chr6_4:1485045-1485064 None:intergenic 35.0%
CTATTCTTAAAGGGATGTGT+TGG - chr6_4:1485043-1485062 Msa0970060:intron 35.0%
TGAGCTTAGTTCAATTGGTA+GGG + chr6_4:1485214-1485233 None:intergenic 35.0%
TACCAATTGAACTAAGCTCA+CGG - chr6_4:1485214-1485233 Msa0970060:intron 35.0%
AAACAGGTGGAAATGATACA+AGG + chr6_4:1485384-1485403 None:intergenic 35.0%
TGTTCTCTGTATAACAACCA+GGG + chr6_4:1485413-1485432 None:intergenic 35.0%
ATACCTTCAACTTGGATGAA+CGG + chr6_4:1485537-1485556 None:intergenic 35.0%
AGTCATCAATACCTTCAACT+TGG + chr6_4:1485545-1485564 None:intergenic 35.0%
!! AAGTTGAAGGTATTGATGAC+TGG - chr6_4:1485544-1485563 Msa0970060:intron 35.0%
!!! TGATTAGTTTTCTGTGTCCT+TGG - chr6_4:1485582-1485601 Msa0970060:intron 35.0%
TCCAGTATTACTGTAAACAC+AGG + chr6_4:1485953-1485972 None:intergenic 35.0%
GTACCACAAATAACCTAAGA+AGG - chr6_4:1486219-1486238 Msa0970060:intron 35.0%
TAATATAAAGCGGCCTTCTT+AGG + chr6_4:1486235-1486254 None:intergenic 35.0%
!!! CCATGTTATTTTGCATGTTG+AGG + chr6_4:1486303-1486322 None:intergenic 35.0%
CCTCAACATGCAAAATAACA+TGG - chr6_4:1486300-1486319 Msa0970060:intron 35.0%
GCAAATCTTTGAATGGTAGT+AGG + chr6_4:1486406-1486425 None:intergenic 35.0%
GGAAAGAAATGATGTTACAG+AGG - chr6_4:1486469-1486488 Msa0970060:intron 35.0%
CATTTCACTTTGCAAAAGGT+CGG + chr6_4:1486766-1486785 None:intergenic 35.0%
!! TTTGATAACTTGCTTGCTAC+TGG + chr6_4:1486881-1486900 None:intergenic 35.0%
AGCAAGCAAGTTATCAAAGT+AGG - chr6_4:1486883-1486902 Msa0970060:intron 35.0%
AATTGAAGGTTTGGGCAATT+TGG + chr6_4:1486978-1486997 None:intergenic 35.0%
TAGACATCTATCTATATCCG+TGG - chr6_4:1487083-1487102 Msa0970060:intron 35.0%
CAGGTTCAATAACATTTCCA+CGG + chr6_4:1487103-1487122 None:intergenic 35.0%
TCAATATCAACACCAACAGA+GGG + chr6_4:1487171-1487190 None:intergenic 35.0%
TTCAATATCAACACCAACAG+AGG + chr6_4:1487172-1487191 None:intergenic 35.0%
CCAGAATTGACTGAAACAAA+AGG + chr6_4:1487379-1487398 None:intergenic 35.0%
!! CCTTTTGTTTCAGTCAATTC+TGG - chr6_4:1487376-1487395 Msa0970060:intron 35.0%
TTTGTTTCAGTCAATTCTGG+CGG - chr6_4:1487379-1487398 Msa0970060:intron 35.0%
TAATACTAGCATGCATATGG+GGG - chr6_4:1487465-1487484 Msa0970060:intron 35.0%
TTGCCTTTCATCTATAGAAG+AGG - chr6_4:1487734-1487753 Msa0970060:intron 35.0%
CGTCAACAACTAACCTAATA+TGG - chr6_4:1488147-1488166 Msa0970060:intron 35.0%
TAGTAGCATTGTCCCATATT+AGG + chr6_4:1488163-1488182 None:intergenic 35.0%
!!! TTGTTTTAGTGCCTTAGGTT+AGG - chr6_4:1488225-1488244 Msa0970060:intron 35.0%
AACAGAGAGAAATATGAACG+GGG + chr6_4:1488272-1488291 None:intergenic 35.0%
CAAGGCATATAATAGTTACC+GGG + chr6_4:1488393-1488412 None:intergenic 35.0%
GCAAGGCATATAATAGTTAC+CGG + chr6_4:1488394-1488413 None:intergenic 35.0%
GGTAACTATTATATGCCTTG+CGG - chr6_4:1488393-1488412 Msa0970060:CDS 35.0%
!!! TTCGCACTTTTTGGGACATT+AGG + chr6_4:1483837-1483856 None:intergenic 40.0%
! TAATGTCCCAAAAAGTGCGA+AGG - chr6_4:1483836-1483855 Msa0970060:three_prime_UTR 40.0%
AGTTGTCTTGTGACAGATGA+AGG - chr6_4:1483963-1483982 Msa0970060:three_prime_UTR 40.0%
ATCCATCTCTGTTCAGTTTC+TGG + chr6_4:1483995-1484014 None:intergenic 40.0%
! CACTTCTCACTTTGGAAAAG+AGG - chr6_4:1484135-1484154 Msa0970060:three_prime_UTR 40.0%
! GGAACGCTCTCTTAATTTTG+AGG - chr6_4:1484157-1484176 Msa0970060:three_prime_UTR 40.0%
CCATGAGAAATTCTGTGTCT+AGG + chr6_4:1484185-1484204 None:intergenic 40.0%
CCTAGACACAGAATTTCTCA+TGG - chr6_4:1484182-1484201 Msa0970060:three_prime_UTR 40.0%
! AAAGGAAGCACATGAACTGA+TGG + chr6_4:1484215-1484234 None:intergenic 40.0%
TTCATGTGCTTCCTTTCAGT+GGG - chr6_4:1484219-1484238 Msa0970060:three_prime_UTR 40.0%
TAAGGCAATAACAGACAGCA+GGG + chr6_4:1484348-1484367 None:intergenic 40.0%
ATAAGGCAATAACAGACAGC+AGG + chr6_4:1484349-1484368 None:intergenic 40.0%
GCTGTCTGTTATTGCCTTAT+TGG - chr6_4:1484349-1484368 Msa0970060:CDS 40.0%
ATGTTGTACCGTTGCAATGA+CGG + chr6_4:1484388-1484407 None:intergenic 40.0%
!! ATCTTTTGTGTGTTGGGTTG+AGG - chr6_4:1484406-1484425 Msa0970060:intron 40.0%
!!! TCTTTTGTGTGTTGGGTTGA+GGG - chr6_4:1484407-1484426 Msa0970060:intron 40.0%
ATCGTCCATACAACATGGTT+TGG - chr6_4:1484593-1484612 Msa0970060:intron 40.0%
TCACACCAAACCATGTTGTA+TGG + chr6_4:1484601-1484620 None:intergenic 40.0%
!! GTTTGGTGTGACAAGTATGT+TGG - chr6_4:1484610-1484629 Msa0970060:intron 40.0%
!! CACCCCTTTGGTCTTTTATT+GGG - chr6_4:1484654-1484673 Msa0970060:intron 40.0%
TGGCCCAATAAAAGACCAAA+GGG + chr6_4:1484660-1484679 None:intergenic 40.0%
! TGTCACTTCTCCTAGAAATG+TGG - chr6_4:1484721-1484740 Msa0970060:intron 40.0%
AAAAGCCTTGAGTCCTACAA+AGG + chr6_4:1484747-1484766 None:intergenic 40.0%
!!! TAGGACTCAAGGCTTTTTTC+AGG - chr6_4:1484750-1484769 Msa0970060:intron 40.0%
!!! AGGACTCAAGGCTTTTTTCA+GGG - chr6_4:1484751-1484770 Msa0970060:intron 40.0%
!!! CCTTTTAAAATGGTGGGAGT+GGG + chr6_4:1484880-1484899 None:intergenic 40.0%
ATGTAGGTCTCACTTAGTGT+GGG + chr6_4:1484906-1484925 None:intergenic 40.0%
AATGTAGGTCTCACTTAGTG+TGG + chr6_4:1484907-1484926 None:intergenic 40.0%
GTGAGCTTAGTTCAATTGGT+AGG + chr6_4:1485215-1485234 None:intergenic 40.0%
ACCAATTGAACTAAGCTCAC+GGG - chr6_4:1485215-1485234 Msa0970060:intron 40.0%
GTGTTCTCTGTATAACAACC+AGG + chr6_4:1485414-1485433 None:intergenic 40.0%
ACATTCCATATCCACTGAGA+AGG - chr6_4:1485432-1485451 Msa0970060:intron 40.0%
GCCTGTGTTTACAGTAATAC+TGG - chr6_4:1485949-1485968 Msa0970060:intron 40.0%
ATACTGTAAGAGGACACTGT+AGG + chr6_4:1486087-1486106 None:intergenic 40.0%
ATTAGCACGATGGCAAAGAT+GGG - chr6_4:1486494-1486513 Msa0970060:intron 40.0%
TAACAACATCAGCAATCACC+TGG + chr6_4:1486677-1486696 None:intergenic 40.0%
GTCACACTTGACTTATGTAC+AGG - chr6_4:1486723-1486742 Msa0970060:intron 40.0%
! CGACCTTTTGCAAAGTGAAA+TGG - chr6_4:1486764-1486783 Msa0970060:intron 40.0%
CGTGGAAATGTTATTGAACC+TGG - chr6_4:1487101-1487120 Msa0970060:intron 40.0%
! TTGAACCTGGTCAGAGTATT+TGG - chr6_4:1487114-1487133 Msa0970060:intron 40.0%
GTAGAGCTCGAAAAAGTCAA+AGG - chr6_4:1487313-1487332 Msa0970060:intron 40.0%
AACATGTACCTCATCAGAGA+AGG + chr6_4:1487346-1487365 None:intergenic 40.0%
CCTCCTCTTCTATAGATGAA+AGG + chr6_4:1487740-1487759 None:intergenic 40.0%
CCTTTCATCTATAGAAGAGG+AGG - chr6_4:1487737-1487756 Msa0970060:intron 40.0%
TCTTGCTGCTCAAGTTACAT+TGG - chr6_4:1487835-1487854 Msa0970060:intron 40.0%
GATGCACAAAAAACCTCTAC+AGG + chr6_4:1487863-1487882 None:intergenic 40.0%
! TCAAGAGTGATGATGACAAG+TGG - chr6_4:1487980-1487999 Msa0970060:CDS 40.0%
ATACAATCACGCCTAACCTA+AGG + chr6_4:1488239-1488258 None:intergenic 40.0%
ATGAATCGACAACTTTGTCC+CGG - chr6_4:1488372-1488391 Msa0970060:intron 40.0%
AACTATTATATGCCTTGCGG+TGG - chr6_4:1488396-1488415 Msa0970060:CDS 40.0%
ATGGGAAACTGTTGTGCTGA+TGG - chr6_4:1483697-1483716 Msa0970060:three_prime_UTR 45.0%
! TTGTGCTGATGGCTTCTCTT+TGG - chr6_4:1483708-1483727 Msa0970060:three_prime_UTR 45.0%
!! GGACATTAGGTTGAATGGGT+TGG + chr6_4:1483824-1483843 None:intergenic 45.0%
GGTGCTTGTTCGTGAAAATC+TGG - chr6_4:1483900-1483919 Msa0970060:three_prime_UTR 45.0%
TGTCTTGTGACAGATGAAGG+CGG - chr6_4:1483966-1483985 Msa0970060:three_prime_UTR 45.0%
AATGCGCTCACTTCTCACTT+TGG - chr6_4:1484127-1484146 Msa0970060:three_prime_UTR 45.0%
GACACAGAATTTCTCATGGG+AGG - chr6_4:1484186-1484205 Msa0970060:three_prime_UTR 45.0%
GTTCATGTGCTTCCTTTCAG+TGG - chr6_4:1484218-1484237 Msa0970060:three_prime_UTR 45.0%
TCATGTGCTTCCTTTCAGTG+GGG - chr6_4:1484220-1484239 Msa0970060:three_prime_UTR 45.0%
CAGTATAGTACCCCACTGAA+AGG + chr6_4:1484233-1484252 None:intergenic 45.0%
AAGGCAATAACAGACAGCAG+GGG + chr6_4:1484347-1484366 None:intergenic 45.0%
GCAGACAATGCAACCCAATA+AGG + chr6_4:1484366-1484385 None:intergenic 45.0%
ATTGTCTGCCGTCATTGCAA+CGG - chr6_4:1484377-1484396 Msa0970060:intron 45.0%
AGCTTCCATGCAAGTTTCGT+GGG - chr6_4:1484498-1484517 Msa0970060:intron 45.0%
CCATGTTGTATGGACGATGT+GGG + chr6_4:1484591-1484610 None:intergenic 45.0%
ACCATGTTGTATGGACGATG+TGG + chr6_4:1484592-1484611 None:intergenic 45.0%
CCAATAAAAGACCAAAGGGG+TGG + chr6_4:1484656-1484675 None:intergenic 45.0%
!! CCACCCCTTTGGTCTTTTAT+TGG - chr6_4:1484653-1484672 Msa0970060:intron 45.0%
GGCCCAATAAAAGACCAAAG+GGG + chr6_4:1484659-1484678 None:intergenic 45.0%
GTGGCCCAATAAAAGACCAA+AGG + chr6_4:1484661-1484680 None:intergenic 45.0%
! GCCACTTTGTCTAGTGTGAT+GGG - chr6_4:1484676-1484695 Msa0970060:intron 45.0%
ACCCATCACACTAGACAAAG+TGG + chr6_4:1484680-1484699 None:intergenic 45.0%
!! TAGTGTGATGGGTTGATTCG+AGG - chr6_4:1484687-1484706 Msa0970060:intron 45.0%
!! AGTGTGATGGGTTGATTCGA+GGG - chr6_4:1484688-1484707 Msa0970060:intron 45.0%
CCTACAAAGGCCACATTTCT+AGG + chr6_4:1484734-1484753 None:intergenic 45.0%
CCTAGAAATGTGGCCTTTGT+AGG - chr6_4:1484731-1484750 Msa0970060:intron 45.0%
! CCCACTCCCACCATTTTAAA+AGG - chr6_4:1484877-1484896 Msa0970060:intron 45.0%
!!! GCCTTTTAAAATGGTGGGAG+TGG + chr6_4:1484881-1484900 None:intergenic 45.0%
!!! GGGACGCCTTTTAAAATGGT+GGG + chr6_4:1484886-1484905 None:intergenic 45.0%
!!! TGGGACGCCTTTTAAAATGG+TGG + chr6_4:1484887-1484906 None:intergenic 45.0%
!! GTGTGGGACGCCTTTTAAAA+TGG + chr6_4:1484890-1484909 None:intergenic 45.0%
CCAATTGAACTAAGCTCACG+GGG - chr6_4:1485216-1485235 Msa0970060:intron 45.0%
CAGGTAGAAACATGCAGAAG+TGG + chr6_4:1485243-1485262 None:intergenic 45.0%
ACAACCAGGGATGAGTAAAC+AGG + chr6_4:1485400-1485419 None:intergenic 45.0%
TTCATCGCTAGCAGAAACTG+TGG + chr6_4:1485458-1485477 None:intergenic 45.0%
! GAACCGTTCATCCAAGTTGA+AGG - chr6_4:1485531-1485550 Msa0970060:intron 45.0%
!! ACGCCAAACAAGTTGGTTGT+AGG - chr6_4:1485669-1485688 Msa0970060:intron 45.0%
! CGTCCTACAACCAACTTGTT+TGG + chr6_4:1485675-1485694 None:intergenic 45.0%
CGTTGCTCAATGATGTGCTA+CGG - chr6_4:1485912-1485931 Msa0970060:intron 45.0%
AGTATCTTGGATGGTCTCGA+AGG + chr6_4:1486037-1486056 None:intergenic 45.0%
CGGCCTTCTTAGGTTATTTG+TGG + chr6_4:1486225-1486244 None:intergenic 45.0%
!! TTCAGGTTGTCTTCAGACGT+TGG - chr6_4:1486447-1486466 Msa0970060:intron 45.0%
! TCAGGTTGTCTTCAGACGTT+GGG - chr6_4:1486448-1486467 Msa0970060:intron 45.0%
TACAGAGGTCATTAGCACGA+TGG - chr6_4:1486484-1486503 Msa0970060:intron 45.0%
CATTAGCACGATGGCAAAGA+TGG - chr6_4:1486493-1486512 Msa0970060:intron 45.0%
TGCAAAAGGTCGGTAAGAAG+TGG + chr6_4:1486756-1486775 None:intergenic 45.0%
CTGAACCAAATACTCTGACC+AGG + chr6_4:1487122-1487141 None:intergenic 45.0%
CTATCAGCTAAACCCTCTGT+TGG - chr6_4:1487156-1487175 Msa0970060:intron 45.0%
GTTTCCTACCTTCTCTGATG+AGG - chr6_4:1487335-1487354 Msa0970060:intron 45.0%
TGTACCTCATCAGAGAAGGT+AGG + chr6_4:1487342-1487361 None:intergenic 45.0%
GGCACTAACGTACTCATCTT+GGG - chr6_4:1487486-1487505 Msa0970060:intron 45.0%
GCACTAACGTACTCATCTTG+GGG - chr6_4:1487487-1487506 Msa0970060:intron 45.0%
! ATCTGCACACGAGTTGAATC+TGG - chr6_4:1487772-1487791 Msa0970060:intron 45.0%
! AGTTACATTGGTGCCTGTAG+AGG - chr6_4:1487847-1487866 Msa0970060:intron 45.0%
! AGAGTGATGATGACAAGTGG+CGG - chr6_4:1487983-1488002 Msa0970060:CDS 45.0%
AATAAAACAAGGCCACCGCA+AGG + chr6_4:1488411-1488430 None:intergenic 45.0%
!! TCATTATTTATTAATATAAA+TGG - chr6_4:1484068-1484087 Msa0970060:three_prime_UTR 5.0%
GTCTTGTGACAGATGAAGGC+GGG - chr6_4:1483967-1483986 Msa0970060:three_prime_UTR 50.0%
TCTTGTGACAGATGAAGGCG+GGG - chr6_4:1483968-1483987 Msa0970060:three_prime_UTR 50.0%
GGCCAGAAACTGAACAGAGA+TGG - chr6_4:1483990-1484009 Msa0970060:three_prime_UTR 50.0%
CAGCTTCCATGCAAGTTTCG+TGG - chr6_4:1484497-1484516 Msa0970060:intron 50.0%
GCTTCCATGCAAGTTTCGTG+GGG - chr6_4:1484499-1484518 Msa0970060:intron 50.0%
CCCACATCGTCCATACAACA+TGG - chr6_4:1484588-1484607 Msa0970060:intron 50.0%
CAAAGGGGTGGTCGCAATTA+AGG + chr6_4:1484644-1484663 None:intergenic 50.0%
CTTAATTGCGACCACCCCTT+TGG - chr6_4:1484642-1484661 Msa0970060:intron 50.0%
! GGCCACTTTGTCTAGTGTGA+TGG - chr6_4:1484675-1484694 Msa0970060:intron 50.0%
!! GTGTGATGGGTTGATTCGAG+GGG - chr6_4:1484689-1484708 Msa0970060:intron 50.0%
!! TGTGATGGGTTGATTCGAGG+GGG - chr6_4:1484690-1484709 Msa0970060:intron 50.0%
TGTGGCCTTTGTAGGACTCA+AGG - chr6_4:1484739-1484758 Msa0970060:intron 50.0%
CCCCGTGAGCTTAGTTCAAT+TGG + chr6_4:1485219-1485238 None:intergenic 50.0%
TCCACCTGTTTACTCATCCC+TGG - chr6_4:1485393-1485412 Msa0970060:CDS 50.0%
ACCAGGGATGAGTAAACAGG+TGG + chr6_4:1485397-1485416 None:intergenic 50.0%
TGTGGCCTTCTCAGTGGATA+TGG + chr6_4:1485440-1485459 None:intergenic 50.0%
AGAAACTGTGGCCTTCTCAG+TGG + chr6_4:1485446-1485465 None:intergenic 50.0%
TTGGTTGTAGGACGACAACC+CGG - chr6_4:1485681-1485700 Msa0970060:intron 50.0%
GAAGCAAGTCATGTCCATCC+GGG + chr6_4:1485702-1485721 None:intergenic 50.0%
GGAAGCAAGTCATGTCCATC+CGG + chr6_4:1485703-1485722 None:intergenic 50.0%
TCTTGGATGGTCTCGAAGGA+TGG + chr6_4:1486033-1486052 None:intergenic 50.0%
CGGTTCTATGCTGACAGTTC+TGG - chr6_4:1487046-1487065 Msa0970060:intron 50.0%
! TCAATTCTGGCGGTGCTGAA+TGG - chr6_4:1487389-1487408 Msa0970060:intron 50.0%
! CAATTCTGGCGGTGCTGAAT+GGG - chr6_4:1487390-1487409 Msa0970060:intron 50.0%
GGGCACTAACGTACTCATCT+TGG - chr6_4:1487485-1487504 Msa0970060:intron 50.0%
! CGAGTTGAATCTGGCACTTC+AGG - chr6_4:1487781-1487800 Msa0970060:intron 50.0%
ACATCAGCTCAACTCAGCTC+TGG + chr6_4:1488054-1488073 None:intergenic 50.0%
!! GGGGGACCTTCGCACTTTTT+GGG + chr6_4:1483845-1483864 None:intergenic 55.0%
! AGGGGGACCTTCGCACTTTT+TGG + chr6_4:1483846-1483865 None:intergenic 55.0%
CTTGTGACAGATGAAGGCGG+GGG - chr6_4:1483969-1483988 Msa0970060:three_prime_UTR 55.0%
GCAATAACAGACAGCAGGGG+TGG + chr6_4:1484344-1484363 None:intergenic 55.0%
!! GTGTGTTGGGTTGAGGGAGT+AGG - chr6_4:1484413-1484432 Msa0970060:intron 55.0%
TCCATGCAAGTTTCGTGGGG+TGG - chr6_4:1484502-1484521 Msa0970060:intron 55.0%
TCCACCCCACGAAACTTGCA+TGG + chr6_4:1484506-1484525 None:intergenic 55.0%
TTGTAGGACGACAACCCGGA+TGG - chr6_4:1485685-1485704 Msa0970060:intron 55.0%
GGTCTCGAAGGATGGAAGGA+GGG + chr6_4:1486025-1486044 None:intergenic 55.0%
TGGTCTCGAAGGATGGAAGG+AGG + chr6_4:1486026-1486045 None:intergenic 55.0%
GGATGGTCTCGAAGGATGGA+AGG + chr6_4:1486029-1486048 None:intergenic 55.0%
GACGTTGCAGCGCTCTAGCC+TGG + chr6_4:1487287-1487306 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 1483662 1488465 1483662 ID=Msa0970060;Name=Msa0970060
chr6_4 mRNA 1483662 1488465 1483662 ID=Msa0970060-mRNA-1;Parent=Msa0970060;Name=Msa0970060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.87|0.77|0.88|1|1|9|651|273
chr6_4 exon 1483662 1484376 1483662 ID=Msa0970060-mRNA-1:exon:760;Parent=Msa0970060-mRNA-1
chr6_4 exon 1484771 1484839 1484771 ID=Msa0970060-mRNA-1:exon:759;Parent=Msa0970060-mRNA-1
chr6_4 exon 1484925 1485041 1484925 ID=Msa0970060-mRNA-1:exon:758;Parent=Msa0970060-mRNA-1
chr6_4 exon 1485337 1485449 1485337 ID=Msa0970060-mRNA-1:exon:757;Parent=Msa0970060-mRNA-1
chr6_4 exon 1485601 1485675 1485601 ID=Msa0970060-mRNA-1:exon:756;Parent=Msa0970060-mRNA-1
chr6_4 exon 1486575 1486700 1486575 ID=Msa0970060-mRNA-1:exon:755;Parent=Msa0970060-mRNA-1
chr6_4 exon 1487886 1488004 1487886 ID=Msa0970060-mRNA-1:exon:754;Parent=Msa0970060-mRNA-1
chr6_4 exon 1488089 1488148 1488089 ID=Msa0970060-mRNA-1:exon:753;Parent=Msa0970060-mRNA-1
chr6_4 exon 1488387 1488465 1488387 ID=Msa0970060-mRNA-1:exon:752;Parent=Msa0970060-mRNA-1
chr6_4 CDS 1488387 1488465 1488387 ID=Msa0970060-mRNA-1:cds;Parent=Msa0970060-mRNA-1
chr6_4 CDS 1488089 1488148 1488089 ID=Msa0970060-mRNA-1:cds;Parent=Msa0970060-mRNA-1
chr6_4 CDS 1487886 1488004 1487886 ID=Msa0970060-mRNA-1:cds;Parent=Msa0970060-mRNA-1
chr6_4 CDS 1486575 1486700 1486575 ID=Msa0970060-mRNA-1:cds;Parent=Msa0970060-mRNA-1
chr6_4 CDS 1485601 1485675 1485601 ID=Msa0970060-mRNA-1:cds;Parent=Msa0970060-mRNA-1
chr6_4 CDS 1485337 1485449 1485337 ID=Msa0970060-mRNA-1:cds;Parent=Msa0970060-mRNA-1
chr6_4 CDS 1484925 1485041 1484925 ID=Msa0970060-mRNA-1:cds;Parent=Msa0970060-mRNA-1
chr6_4 CDS 1484771 1484839 1484771 ID=Msa0970060-mRNA-1:cds;Parent=Msa0970060-mRNA-1
chr6_4 CDS 1484313 1484376 1484313 ID=Msa0970060-mRNA-1:cds;Parent=Msa0970060-mRNA-1
chr6_4 three_prime_UTR 1483662 1484312 1483662 ID=Msa0970060-mRNA-1:three_prime_utr;Parent=Msa0970060-mRNA-1
Gene Sequence

>Msa0970060

ATGGCTAGGGCTGTATCAAAGCTCTTCAAAATGTTATGGGAAACTGTTGTGCTGATGGCTTCTCTTTGGAGTCCTGCATATGAAGGCGGGGGCCAGAAACTGAACAGAGATGGATGTTCTATTGAAGTACAGAAACGAGGGAGAATGCGCTCACTTCTCACTTTGGAAAAGAGGGAACGCTCTCTTAATTTTGAGGAACCTAGACACAGAATTTCTCATGGGAGGACACCATCAGTTCATGTGCTTCCTTTCAGTGGGAGAACACATTCCATATCCACTGAGAAGGCCACAGTTTCTGCTAGCGATGAAGATTCTATTGCTGATTTAATGGAACAACACGATGCATTTATCAGTTCAATGCAGAACCGTTCATCCAAGTTGAAGGTTGTCTTCAGACGTTGGGAAAGAAATGATGTTACAGAGGTCATTAGCACGATGGCAAAGATGGGCGATCATGCTGTGATTGCTGATGTTGTTAGCATTATAATGGAGAAAATTGATATGGTCACACTTGACTTATGTACAGGTCTTCTGCCACTTCTTACCGACCTTTTGCAAAGTGAAATGGATAGACATCTATCTATATCCGTGGAAATGTTATTGAACCTGGTCAGAGTATTTGGTTCAGTAATCTATTCAACGCTATCAGCTAAACCCTCTGTTGGTGTTGATATTGAAGCAGAGAAAAGGCTAGAGCGCTGCAACGTCTGCTTTGTAGAGCTCGAAAAAGTCAAAGGTTTCCTACCTTCTCTGATGAGAAGAGGAGGATCAATTGCAAAATCTGCACACGAGTTGAATCTGGCACTTCAGGATGTGTCGTGA
Protein sequence

>Msa0970060

MARAVSKLFKMLWETVVLMASLWSPAYEGGGQKLNRDGCSIEVQKRGRMRSLLTLEKRERSLNFEEPRHRISHGRTPSVHVLPFSGRTHSISTEKATVSASDEDSIADLMEQHDAFISSMQNRSSKLKVVFRRWERNDVTEVISTMAKMGDHAVIADVVSIIMEKIDMVTLDLCTGLLPLLTDLLQSEMDRHLSISVEMLLNLVRVFGSVIYSTLSAKPSVGVDIEAEKRLERCNVCFVELEKVKGFLPSLMRRGGSIAKSAHELNLALQDVS*