Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451560 | G7LDS0 | 97.436 | 117 | 3 | 0 | 1 | 117 | 410 | 526 | 2.32e-77 | 246 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa1451560 | 0.832858 | 7.435915e-56 | -8.615850e-47 |
| Msa0006380 | Msa1451560 | 0.805121 | 1.555038e-49 | -8.615850e-47 |
| Msa0009430 | Msa1451560 | 0.828181 | 1.036776e-54 | -8.615850e-47 |
| Msa0030170 | Msa1451560 | 0.808677 | 2.753553e-50 | -8.615850e-47 |
| Msa0037250 | Msa1451560 | 0.846207 | 2.511108e-59 | -8.615850e-47 |
| Msa0043980 | Msa1451560 | 0.818636 | 1.767702e-52 | -8.615850e-47 |
| Msa0046740 | Msa1451560 | 0.801414 | 9.107958e-49 | -8.615850e-47 |
| Msa0056470 | Msa1451560 | 0.852771 | 3.710297e-61 | -8.615850e-47 |
| Msa0072420 | Msa1451560 | 0.819745 | 9.884101e-53 | -8.615850e-47 |
| Msa0090360 | Msa1451560 | 0.835181 | 1.948957e-56 | -8.615850e-47 |
| Msa0090520 | Msa1451560 | 0.805915 | 1.060074e-49 | -8.615850e-47 |
| Msa0091610 | Msa1451560 | 0.805088 | 1.580637e-49 | -8.615850e-47 |
| Msa0100740 | Msa1451560 | 0.811070 | 8.415768e-51 | -8.615850e-47 |
| Msa0109460 | Msa1451560 | 0.804003 | 2.660783e-49 | -8.615850e-47 |
| Msa0115990 | Msa1451560 | 0.833305 | 5.755426e-56 | -8.615850e-47 |
| Msa1346730 | Msa1451560 | 0.807233 | 5.585514e-50 | -8.615850e-47 |
| Msa1353980 | Msa1451560 | 0.809677 | 1.681617e-50 | -8.615850e-47 |
| Msa1361100 | Msa1451560 | 0.811392 | 7.163111e-51 | -8.615850e-47 |
| Msa1367590 | Msa1451560 | 0.815666 | 8.224596e-52 | -8.615850e-47 |
| Msa1368120 | Msa1451560 | 0.804378 | 2.223408e-49 | -8.615850e-47 |
| Msa1370070 | Msa1451560 | -0.810615 | 1.055588e-50 | -8.615850e-47 |
| Msa1375560 | Msa1451560 | 0.802043 | 6.765953e-49 | -8.615850e-47 |
| Msa1385770 | Msa1451560 | 0.815069 | 1.116555e-51 | -8.615850e-47 |
| Msa1386780 | Msa1451560 | 0.816266 | 6.041741e-52 | -8.615850e-47 |
| Msa1391410 | Msa1451560 | 0.821143 | 4.722522e-53 | -8.615850e-47 |
| Msa1394500 | Msa1451560 | 0.805933 | 1.050985e-49 | -8.615850e-47 |
| Msa1402420 | Msa1451560 | -0.827423 | 1.577442e-54 | -8.615850e-47 |
| Msa1407460 | Msa1451560 | 0.827245 | 1.740013e-54 | -8.615850e-47 |
| Msa1409240 | Msa1451560 | 0.813879 | 2.046456e-51 | -8.615850e-47 |
| Msa1418340 | Msa1451560 | 0.834457 | 2.964462e-56 | -8.615850e-47 |
| Msa1419870 | Msa1451560 | 0.806503 | 7.970186e-50 | -8.615850e-47 |
| Msa1428880 | Msa1451560 | 0.812076 | 5.084827e-51 | -8.615850e-47 |
| Msa1433390 | Msa1451560 | 0.835872 | 1.302914e-56 | -8.615850e-47 |
| Msa1434420 | Msa1451560 | -0.843952 | 1.020730e-58 | -8.615850e-47 |
| Msa1443780 | Msa1451560 | 0.821160 | 4.680105e-53 | -8.615850e-47 |
| Msa1451160 | Msa1451560 | 0.807255 | 5.527944e-50 | -8.615850e-47 |
| Msa1451550 | Msa1451560 | 0.815079 | 1.111089e-51 | -8.615850e-47 |
| Msa1451560 | Msa1452240 | 0.812661 | 3.789609e-51 | -8.615850e-47 |
| Msa1451560 | Msa1461280 | 0.823645 | 1.239161e-53 | -8.615850e-47 |
| Msa0602870 | Msa1451560 | 0.821157 | 4.686365e-53 | -8.615850e-47 |
| Msa0607050 | Msa1451560 | 0.818191 | 2.229393e-52 | -8.615850e-47 |
| Msa0607210 | Msa1451560 | 0.822584 | 2.190710e-53 | -8.615850e-47 |
| Msa0608320 | Msa1451560 | 0.820727 | 5.886102e-53 | -8.615850e-47 |
| Msa0610430 | Msa1451560 | 0.801255 | 9.815048e-49 | -8.615850e-47 |
| Msa0615710 | Msa1451560 | 0.823366 | 1.439871e-53 | -8.615850e-47 |
| Msa0623790 | Msa1451560 | 0.844338 | 8.044353e-59 | -8.615850e-47 |
| Msa0643560 | Msa1451560 | 0.822797 | 1.954592e-53 | -8.615850e-47 |
| Msa0643890 | Msa1451560 | 0.817975 | 2.495316e-52 | -8.615850e-47 |
| Msa0647500 | Msa1451560 | 0.832263 | 1.044699e-55 | -8.615850e-47 |
| Msa0649490 | Msa1451560 | 0.807051 | 6.106360e-50 | -8.615850e-47 |
| Msa0651050 | Msa1451560 | 0.835079 | 2.067933e-56 | -8.615850e-47 |
| Msa0661300 | Msa1451560 | 0.843126 | 1.696794e-58 | -8.615850e-47 |
| Msa0662500 | Msa1451560 | 0.802783 | 4.762804e-49 | -8.615850e-47 |
| Msa0665860 | Msa1451560 | 0.809291 | 2.035097e-50 | -8.615850e-47 |
| Msa0666270 | Msa1451560 | 0.816092 | 6.609177e-52 | -8.615850e-47 |
| Msa0669520 | Msa1451560 | 0.816783 | 4.627747e-52 | -8.615850e-47 |
| Msa0690150 | Msa1451560 | 0.823763 | 1.162520e-53 | -8.615850e-47 |
| Msa0692840 | Msa1451560 | 0.817410 | 3.346145e-52 | -8.615850e-47 |
| Msa0692940 | Msa1451560 | 0.814389 | 1.579599e-51 | -8.615850e-47 |
| Msa0697940 | Msa1451560 | 0.824327 | 8.571930e-54 | -8.615850e-47 |
| Msa0698540 | Msa1451560 | 0.819417 | 1.174391e-52 | -8.615850e-47 |
| Msa0709400 | Msa1451560 | 0.852177 | 5.478357e-61 | -8.615850e-47 |
| Msa0711890 | Msa1451560 | 0.820636 | 6.176609e-53 | -8.615850e-47 |
| Msa0716690 | Msa1451560 | 0.823750 | 1.170463e-53 | -8.615850e-47 |
| Msa0722020 | Msa1451560 | 0.821474 | 3.960073e-53 | -8.615850e-47 |
| Msa0747060 | Msa1451560 | 0.819377 | 1.199499e-52 | -8.615850e-47 |
| Msa0750170 | Msa1451560 | 0.842052 | 3.271321e-58 | -8.615850e-47 |
| Msa0763020 | Msa1451560 | 0.824432 | 8.096256e-54 | -8.615850e-47 |
| Msa0763070 | Msa1451560 | 0.833381 | 5.510302e-56 | -8.615850e-47 |
| Msa0788850 | Msa1451560 | 0.823599 | 1.269838e-53 | -8.615850e-47 |
| Msa0794730 | Msa1451560 | 0.813586 | 2.374773e-51 | -8.615850e-47 |
| Msa0801110 | Msa1451560 | 0.818072 | 2.371782e-52 | -8.615850e-47 |
| Msa0806790 | Msa1451560 | 0.805032 | 1.623399e-49 | -8.615850e-47 |
| Msa0806800 | Msa1451560 | 0.804020 | 2.640007e-49 | -8.615850e-47 |
| Msa0808270 | Msa1451560 | 0.804360 | 2.242053e-49 | -8.615850e-47 |
| Msa0123560 | Msa1451560 | 0.849737 | 2.668195e-60 | -8.615850e-47 |
| Msa0125450 | Msa1451560 | 0.809422 | 1.907072e-50 | -8.615850e-47 |
| Msa0125540 | Msa1451560 | 0.827813 | 1.271809e-54 | -8.615850e-47 |
| Msa0127650 | Msa1451560 | 0.818547 | 1.851609e-52 | -8.615850e-47 |
| Msa0129060 | Msa1451560 | 0.807923 | 3.987773e-50 | -8.615850e-47 |
| Msa0137840 | Msa1451560 | 0.817746 | 2.810238e-52 | -8.615850e-47 |
| Msa0137990 | Msa1451560 | 0.806560 | 7.751348e-50 | -8.615850e-47 |
| Msa0140110 | Msa1451560 | 0.830048 | 3.657833e-55 | -8.615850e-47 |
| Msa0140650 | Msa1451560 | 0.843961 | 1.015006e-58 | -8.615850e-47 |
| Msa0140820 | Msa1451560 | 0.851339 | 9.463362e-61 | -8.615850e-47 |
| Msa0149200 | Msa1451560 | 0.802434 | 5.621176e-49 | -8.615850e-47 |
| Msa0150300 | Msa1451560 | 0.823367 | 1.438895e-53 | -8.615850e-47 |
| Msa0183900 | Msa1451560 | 0.806181 | 9.320149e-50 | -8.615850e-47 |
| Msa0184040 | Msa1451560 | 0.828122 | 1.071554e-54 | -8.615850e-47 |
| Msa0184780 | Msa1451560 | 0.823680 | 1.215843e-53 | -8.615850e-47 |
| Msa0189320 | Msa1451560 | 0.801006 | 1.103868e-48 | -8.615850e-47 |
| Msa0191050 | Msa1451560 | 0.835203 | 1.924155e-56 | -8.615850e-47 |
| Msa0194950 | Msa1451560 | -0.821718 | 3.478909e-53 | -8.615850e-47 |
| Msa0199880 | Msa1451560 | 0.805917 | 1.059188e-49 | -8.615850e-47 |
| Msa0205130 | Msa1451560 | 0.800203 | 1.609300e-48 | -8.615850e-47 |
| Msa0209350 | Msa1451560 | 0.835465 | 1.651609e-56 | -8.615850e-47 |
| Msa0209500 | Msa1451560 | 0.806123 | 9.584479e-50 | -8.615850e-47 |
| Msa0229760 | Msa1451560 | 0.806777 | 6.975603e-50 | -8.615850e-47 |
| Msa0231980 | Msa1451560 | 0.808212 | 3.460344e-50 | -8.615850e-47 |
| Msa0232050 | Msa1451560 | 0.807242 | 5.561543e-50 | -8.615850e-47 |
| Msa0233350 | Msa1451560 | 0.824635 | 7.254530e-54 | -8.615850e-47 |
| Msa0237410 | Msa1451560 | 0.800337 | 1.510811e-48 | -8.615850e-47 |
| Msa1239910 | Msa1451560 | 0.835213 | 1.912221e-56 | -8.615850e-47 |
| Msa1243740 | Msa1451560 | -0.826996 | 1.995773e-54 | -8.615850e-47 |
| Msa1244600 | Msa1451560 | 0.969697 | 1.666608e-130 | -8.615850e-47 |
| Msa1244610 | Msa1451560 | 0.808969 | 2.384553e-50 | -8.615850e-47 |
| Msa1253020 | Msa1451560 | 0.818405 | 1.993852e-52 | -8.615850e-47 |
| Msa1254730 | Msa1451560 | 0.812755 | 3.614022e-51 | -8.615850e-47 |
| Msa1267430 | Msa1451560 | 0.806330 | 8.668259e-50 | -8.615850e-47 |
| Msa1279400 | Msa1451560 | 0.830842 | 2.339154e-55 | -8.615850e-47 |
| Msa1294120 | Msa1451560 | 0.828060 | 1.108696e-54 | -8.615850e-47 |
| Msa1294820 | Msa1451560 | 0.823028 | 1.726505e-53 | -8.615850e-47 |
| Msa1304820 | Msa1451560 | 0.800781 | 1.226970e-48 | -8.615850e-47 |
| Msa1305660 | Msa1451560 | 0.837768 | 4.276878e-57 | -8.615850e-47 |
| Msa1331320 | Msa1451560 | 0.800011 | 1.760205e-48 | -8.615850e-47 |
| Msa1341060 | Msa1451560 | 0.802225 | 6.205134e-49 | -8.615850e-47 |
| Msa0366890 | Msa1451560 | 0.827995 | 1.149456e-54 | -8.615850e-47 |
| Msa0369450 | Msa1451560 | 0.821257 | 4.445114e-53 | -8.615850e-47 |
| Msa0376300 | Msa1451560 | 0.850186 | 1.997986e-60 | -8.615850e-47 |
| Msa0376310 | Msa1451560 | 0.856142 | 3.929831e-62 | -8.615850e-47 |
| Msa0378490 | Msa1451560 | 0.812713 | 3.691183e-51 | -8.615850e-47 |
| Msa0380300 | Msa1451560 | 0.842449 | 2.568357e-58 | -8.615850e-47 |
| Msa0388700 | Msa1451560 | 0.813497 | 2.484150e-51 | -8.615850e-47 |
| Msa0390030 | Msa1451560 | 0.806640 | 7.457228e-50 | -8.615850e-47 |
| Msa0391690 | Msa1451560 | 0.807748 | 4.344615e-50 | -8.615850e-47 |
| Msa0395820 | Msa1451560 | 0.832697 | 8.154120e-56 | -8.615850e-47 |
| Msa0398670 | Msa1451560 | 0.833033 | 6.726840e-56 | -8.615850e-47 |
| Msa0414800 | Msa1451560 | 0.806425 | 8.279789e-50 | -8.615850e-47 |
| Msa0415430 | Msa1451560 | 0.824643 | 7.222387e-54 | -8.615850e-47 |
| Msa0427150 | Msa1451560 | 0.812808 | 3.519371e-51 | -8.615850e-47 |
| Msa0439200 | Msa1451560 | 0.805065 | 1.597601e-49 | -8.615850e-47 |
| Msa0468330 | Msa1451560 | 0.840220 | 9.915142e-58 | -8.615850e-47 |
| Msa0469990 | Msa1451560 | 0.862054 | 6.649836e-64 | -8.615850e-47 |
| Msa0471440 | Msa1451560 | 0.841959 | 3.462424e-58 | -8.615850e-47 |
| Msa0477080 | Msa1451560 | 0.851692 | 7.521319e-61 | -8.615850e-47 |
| Msa0479270 | Msa1451560 | 0.811643 | 6.319613e-51 | -8.615850e-47 |
| Msa0479970 | Msa1451560 | 0.823370 | 1.436947e-53 | -8.615850e-47 |
| Msa0980880 | Msa1451560 | 0.804509 | 2.088155e-49 | -8.615850e-47 |
| Msa0997970 | Msa1451560 | 0.801807 | 7.562949e-49 | -8.615850e-47 |
| Msa1012320 | Msa1451560 | 0.802096 | 6.595988e-49 | -8.615850e-47 |
| Msa1034150 | Msa1451560 | 0.812284 | 4.581601e-51 | -8.615850e-47 |
| Msa1034890 | Msa1451560 | 0.816808 | 4.569409e-52 | -8.615850e-47 |
| Msa1040400 | Msa1451560 | 0.806797 | 6.908349e-50 | -8.615850e-47 |
| Msa1046020 | Msa1451560 | 0.821106 | 4.816538e-53 | -8.615850e-47 |
| Msa1046060 | Msa1451560 | 0.811792 | 5.862515e-51 | -8.615850e-47 |
| Msa1078170 | Msa1451560 | 0.804706 | 1.898982e-49 | -8.615850e-47 |
| Msa1081360 | Msa1451560 | -0.825085 | 5.680565e-54 | -8.615850e-47 |
| Msa1081930 | Msa1451560 | 0.843414 | 1.422129e-58 | -8.615850e-47 |
| Msa1091100 | Msa1451560 | 0.815357 | 9.633811e-52 | -8.615850e-47 |
| Msa0243090 | Msa1451560 | 0.806840 | 6.765084e-50 | -8.615850e-47 |
| Msa0249200 | Msa1451560 | 0.801971 | 6.999777e-49 | -8.615850e-47 |
| Msa0249860 | Msa1451560 | 0.802560 | 5.295005e-49 | -8.615850e-47 |
| Msa0267970 | Msa1451560 | 0.811100 | 8.287164e-51 | -8.615850e-47 |
| Msa0272300 | Msa1451560 | 0.805627 | 1.218255e-49 | -8.615850e-47 |
| Msa0273900 | Msa1451560 | 0.831617 | 1.508244e-55 | -8.615850e-47 |
| Msa0280610 | Msa1451560 | 0.811147 | 8.096335e-51 | -8.615850e-47 |
| Msa0288180 | Msa1451560 | 0.801371 | 9.293773e-49 | -8.615850e-47 |
| Msa0310030 | Msa1451560 | 0.841860 | 3.676928e-58 | -8.615850e-47 |
| Msa0314720 | Msa1451560 | 0.822392 | 2.427347e-53 | -8.615850e-47 |
| Msa0315440 | Msa1451560 | -0.824435 | 8.083594e-54 | -8.615850e-47 |
| Msa0334550 | Msa1451560 | 0.813583 | 2.377805e-51 | -8.615850e-47 |
| Msa0341050 | Msa1451560 | 0.808000 | 3.839684e-50 | -8.615850e-47 |
| Msa0346430 | Msa1451560 | 0.816620 | 5.034288e-52 | -8.615850e-47 |
| Msa1107900 | Msa1451560 | 0.800888 | 1.166746e-48 | -8.615850e-47 |
| Msa1124960 | Msa1451560 | 0.835288 | 1.830708e-56 | -8.615850e-47 |
| Msa1126830 | Msa1451560 | 0.820734 | 5.864562e-53 | -8.615850e-47 |
| Msa1128600 | Msa1451560 | 0.808561 | 2.915028e-50 | -8.615850e-47 |
| Msa1130980 | Msa1451560 | 0.835968 | 1.231898e-56 | -8.615850e-47 |
| Msa1134090 | Msa1451560 | 0.803376 | 3.590743e-49 | -8.615850e-47 |
| Msa1147280 | Msa1451560 | 0.829717 | 4.402076e-55 | -8.615850e-47 |
| Msa1147970 | Msa1451560 | 0.800736 | 1.253302e-48 | -8.615850e-47 |
| Msa1159840 | Msa1451560 | 0.816158 | 6.388140e-52 | -8.615850e-47 |
| Msa1160590 | Msa1451560 | 0.808526 | 2.966356e-50 | -8.615850e-47 |
| Msa1165230 | Msa1451560 | 0.801859 | 7.380751e-49 | -8.615850e-47 |
| Msa1165940 | Msa1451560 | 0.879964 | 8.101462e-70 | -8.615850e-47 |
| Msa1167340 | Msa1451560 | 0.816471 | 5.435348e-52 | -8.615850e-47 |
| Msa1170410 | Msa1451560 | 0.823513 | 1.330065e-53 | -8.615850e-47 |
| Msa1190930 | Msa1451560 | 0.820654 | 6.119267e-53 | -8.615850e-47 |
| Msa1199990 | Msa1451560 | 0.816595 | 5.099233e-52 | -8.615850e-47 |
| Msa1211890 | Msa1451560 | 0.802641 | 5.094619e-49 | -8.615850e-47 |
| Msa0485850 | Msa1451560 | 0.809763 | 1.610809e-50 | -8.615850e-47 |
| Msa0512340 | Msa1451560 | 0.812425 | 4.267875e-51 | -8.615850e-47 |
| Msa0518390 | Msa1451560 | 0.818775 | 1.643688e-52 | -8.615850e-47 |
| Msa0518450 | Msa1451560 | 0.816320 | 5.877475e-52 | -8.615850e-47 |
| Msa0521050 | Msa1451560 | 0.820184 | 7.841480e-53 | -8.615850e-47 |
| Msa0524500 | Msa1451560 | 0.818617 | 1.785234e-52 | -8.615850e-47 |
| Msa0531530 | Msa1451560 | 0.824241 | 8.981657e-54 | -8.615850e-47 |
| Msa0539410 | Msa1451560 | 0.810491 | 1.122948e-50 | -8.615850e-47 |
| Msa0544180 | Msa1451560 | 0.817409 | 3.347940e-52 | -8.615850e-47 |
| Msa0547160 | Msa1451560 | 0.826413 | 2.749823e-54 | -8.615850e-47 |
| Msa0548240 | Msa1451560 | 0.889258 | 2.845139e-73 | -8.615850e-47 |
| Msa0556060 | Msa1451560 | 0.829104 | 6.203210e-55 | -8.615850e-47 |
| Msa0581110 | Msa1451560 | 0.823457 | 1.370818e-53 | -8.615850e-47 |
| Msa0588260 | Msa1451560 | 0.803681 | 3.104456e-49 | -8.615850e-47 |
| Msa0847770 | Msa1451560 | 0.814649 | 1.383706e-51 | -8.615850e-47 |
| Msa0866550 | Msa1451560 | 0.800848 | 1.188855e-48 | -8.615850e-47 |
| Msa0880020 | Msa1451560 | 0.820845 | 5.530330e-53 | -8.615850e-47 |
| Msa0881460 | Msa1451560 | 0.803168 | 3.964706e-49 | -8.615850e-47 |
| Msa0924470 | Msa1451560 | 0.810098 | 1.364402e-50 | -8.615850e-47 |
| Msa0945970 | Msa1451560 | 0.809867 | 1.530401e-50 | -8.615850e-47 |
| Msa0963270 | Msa1451560 | 0.833167 | 6.228421e-56 | -8.615850e-47 |
| Msa0968590 | Msa1451560 | 0.825843 | 3.758284e-54 | -8.615850e-47 |
| Msa0969810 | Msa1451560 | 0.801440 | 8.996630e-49 | -8.615850e-47 |
| Msa0970060 | Msa1451560 | 0.807915 | 4.002560e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451560 | MtrunA17_Chr8g0360281 | 97.436 | 117 | 3 | 0 | 1 | 117 | 410 | 526 | 4.46e-81 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451560 | AT3G15180.1 | 58.974 | 117 | 46 | 2 | 1 | 117 | 405 | 519 | 3.04e-39 | 137 |
| Msa1451560 | AT3G15180.2 | 58.974 | 117 | 46 | 2 | 1 | 117 | 437 | 551 | 5.05e-39 | 137 |
Find 25 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTTATGAATATCATTT+TGG | 0.264813 | tig0033459:-5656 | Msa1451560:three_prime_UTR |
| TAATAGTTTGTTATGACTTC+AGG | 0.296563 | tig0033459:-5792 | Msa1451560:three_prime_UTR |
| AGTCATAACAAACTATTATT+AGG | 0.330833 | tig0033459:+5797 | None:intergenic |
| TTAAATGTCTCACCGCTATA+CGG | 0.368585 | tig0033459:+6989 | None:intergenic |
| GTCTCGACCGTGGTGCTTGA+TGG | 0.390375 | tig0033459:-6395 | Msa1451560:CDS |
| TTGATCTAGACTTGAGCGTT+TGG | 0.409997 | tig0033459:-5732 | Msa1451560:three_prime_UTR |
| CTATCAGCCGTCATCACAAT+AGG | 0.428327 | tig0033459:+5897 | None:intergenic |
| CTATTATTAGGTAAAGAGTA+AGG | 0.459022 | tig0033459:+5809 | None:intergenic |
| GCAGCTGTTCCTGCAAAAGC+AGG | 0.484395 | tig0033459:+6107 | None:intergenic |
| GTCTAGATCAAAAGTTGTAA+AGG | 0.490892 | tig0033459:+5744 | None:intergenic |
| GTTTGTTATGACTTCAGGAT+TGG | 0.491099 | tig0033459:-5787 | Msa1451560:three_prime_UTR |
| CAGGGTTATAGAATGATAAG+TGG | 0.493664 | tig0033459:-6424 | Msa1451560:CDS |
| TAAGACTTAAATTGGTACAT+TGG | 0.501633 | tig0033459:-5687 | Msa1451560:three_prime_UTR |
| CTGCAAGAAGCCGTAGGAAT+GGG | 0.511865 | tig0033459:-5957 | Msa1451560:CDS |
| CGCTTTCGATGATGAAGATA+CGG | 0.525676 | tig0033459:+5933 | None:intergenic |
| GCTGCAAGAAGCCGTAGGAA+TGG | 0.539955 | tig0033459:-5958 | Msa1451560:CDS |
| TGTAGTTTCAGTACTTGGGT+CGG | 0.550899 | tig0033459:+6336 | None:intergenic |
| TTATAGAATGATAAGTGGAT+TGG | 0.557998 | tig0033459:-6419 | Msa1451560:CDS |
| AGCTCAACCTATTGTGATGA+CGG | 0.603732 | tig0033459:-5904 | Msa1451560:CDS |
| AAGATACGGACCCATTCCTA+CGG | 0.635459 | tig0033459:+5947 | None:intergenic |
| CTAGATATAACTGCTGCATG+CGG | 0.647515 | tig0033459:-6172 | Msa1451560:CDS |
| GTGCAGCTGCAAGAAGCCGT+AGG | 0.664105 | tig0033459:-5963 | Msa1451560:intron |
| AGATTCAGAAATCCGTATAG+CGG | 0.690364 | tig0033459:-7001 | Msa1451560:intron |
| CATATCTCCATCAAGCACCA+CGG | 0.693939 | tig0033459:+6388 | None:intergenic |
| GTGGATTGGTGTCTCGACCG+TGG | 0.710959 | tig0033459:-6405 | Msa1451560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATAAAATAGTAATATT+CGG | + | tig0033459:6437-6456 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTAAGACTTAAAT+TGG | - | tig0033459:6983-7002 | Msa1451560:intron | 10.0% |
| !!! | TTAATTTATGAATATCATTT+TGG | - | tig0033459:7022-7041 | Msa1451560:CDS | 10.0% |
| !! | GAAAATAAAATAGTAATATT+CGG | + | tig0033459:6437-6456 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTAAGACTTAAAT+TGG | - | tig0033459:6983-7002 | Msa1451560:intron | 10.0% |
| !!! | TTAATTTATGAATATCATTT+TGG | - | tig0033459:7022-7041 | Msa1451560:CDS | 10.0% |
| !!! | CTTAATTTGATGATATTATT+GGG | + | tig0033459:5895-5914 | None:intergenic | 15.0% |
| !!! | TGTATTATTTTAACACAAAT+CGG | - | tig0033459:6464-6483 | Msa1451560:intron | 15.0% |
| !!! | CTTAATTTGATGATATTATT+GGG | + | tig0033459:5895-5914 | None:intergenic | 15.0% |
| !!! | TGTATTATTTTAACACAAAT+CGG | - | tig0033459:6464-6483 | Msa1451560:intron | 15.0% |
| !! | GTAATTTCAATTTCATATGA+TGG | - | tig0033459:5808-5827 | Msa1451560:three_prime_UTR | 20.0% |
| !!! | CCTTAATTTGATGATATTAT+TGG | + | tig0033459:5896-5915 | None:intergenic | 20.0% |
| !! | CCAATAATATCATCAAATTA+AGG | - | tig0033459:5893-5912 | Msa1451560:CDS | 20.0% |
| !! | TAATATCATCAAATTAAGGA+AGG | - | tig0033459:5897-5916 | Msa1451560:CDS | 20.0% |
| !!! | ATAGGTAAAAAACTTTTTGT+AGG | + | tig0033459:6004-6023 | None:intergenic | 20.0% |
| !!! | ATACTAGATTTTCTAATATC+AGG | - | tig0033459:6118-6137 | Msa1451560:CDS | 20.0% |
| !! | AGTCATAACAAACTATTATT+AGG | + | tig0033459:6884-6903 | None:intergenic | 20.0% |
| !! | GTAATTTCAATTTCATATGA+TGG | - | tig0033459:5808-5827 | Msa1451560:three_prime_UTR | 20.0% |
| !!! | CCTTAATTTGATGATATTAT+TGG | + | tig0033459:5896-5915 | None:intergenic | 20.0% |
| !! | CCAATAATATCATCAAATTA+AGG | - | tig0033459:5893-5912 | Msa1451560:CDS | 20.0% |
| !! | TAATATCATCAAATTAAGGA+AGG | - | tig0033459:5897-5916 | Msa1451560:CDS | 20.0% |
| !!! | ATAGGTAAAAAACTTTTTGT+AGG | + | tig0033459:6004-6023 | None:intergenic | 20.0% |
| !!! | ATACTAGATTTTCTAATATC+AGG | - | tig0033459:6118-6137 | Msa1451560:CDS | 20.0% |
| !! | AGTCATAACAAACTATTATT+AGG | + | tig0033459:6884-6903 | None:intergenic | 20.0% |
| ! | TATAAAGCTATGTTATGTTC+AGG | + | tig0033459:5773-5792 | None:intergenic | 25.0% |
| !! | ATGCTACATAATTGAGTTTT+GGG | + | tig0033459:5858-5877 | None:intergenic | 25.0% |
| !! | AATGCTACATAATTGAGTTT+TGG | + | tig0033459:5859-5878 | None:intergenic | 25.0% |
| ! | TGCAAAGTTATATTACTAGT+AGG | - | tig0033459:5930-5949 | Msa1451560:CDS | 25.0% |
| ! | GATGATGTCTAAGAAAAAAT+AGG | + | tig0033459:6022-6041 | None:intergenic | 25.0% |
| !! | TTCCTGAATTTTCTTTACAA+CGG | + | tig0033459:6144-6163 | None:intergenic | 25.0% |
| ! | GACTTTCTTTAGTGAATTTA+AGG | + | tig0033459:6207-6226 | None:intergenic | 25.0% |
| !! | TTTTTGTGTGACATATTTTC+AGG | - | tig0033459:6235-6254 | Msa1451560:intron | 25.0% |
| !! | TTTTGTGTGACATATTTTCA+GGG | - | tig0033459:6236-6255 | Msa1451560:intron | 25.0% |
| ! | TTATAGAATGATAAGTGGAT+TGG | - | tig0033459:6259-6278 | Msa1451560:intron | 25.0% |
| !! | TTTTTGTAGTTTCAGTACTT+GGG | + | tig0033459:6349-6368 | None:intergenic | 25.0% |
| !! | ATTTTTGTAGTTTCAGTACT+TGG | + | tig0033459:6350-6369 | None:intergenic | 25.0% |
| !! | AGTACTGAAACTACAAAAAT+AGG | - | tig0033459:6350-6369 | Msa1451560:CDS | 25.0% |
| !!! | ACTGTTTTCTTGATTTGTTT+AGG | + | tig0033459:6656-6675 | None:intergenic | 25.0% |
| ! | CTATTATTAGGTAAAGAGTA+AGG | + | tig0033459:6872-6891 | None:intergenic | 25.0% |
| !!! | TAATAGTTTGTTATGACTTC+AGG | - | tig0033459:6886-6905 | Msa1451560:intron | 25.0% |
| ! | TAAGACTTAAATTGGTACAT+TGG | - | tig0033459:6991-7010 | Msa1451560:intron | 25.0% |
| ! | TATAAAGCTATGTTATGTTC+AGG | + | tig0033459:5773-5792 | None:intergenic | 25.0% |
| !! | ATGCTACATAATTGAGTTTT+GGG | + | tig0033459:5858-5877 | None:intergenic | 25.0% |
| !! | AATGCTACATAATTGAGTTT+TGG | + | tig0033459:5859-5878 | None:intergenic | 25.0% |
| ! | TGCAAAGTTATATTACTAGT+AGG | - | tig0033459:5930-5949 | Msa1451560:CDS | 25.0% |
| ! | GATGATGTCTAAGAAAAAAT+AGG | + | tig0033459:6022-6041 | None:intergenic | 25.0% |
| !! | TTCCTGAATTTTCTTTACAA+CGG | + | tig0033459:6144-6163 | None:intergenic | 25.0% |
| ! | GACTTTCTTTAGTGAATTTA+AGG | + | tig0033459:6207-6226 | None:intergenic | 25.0% |
| !! | TTTTTGTGTGACATATTTTC+AGG | - | tig0033459:6235-6254 | Msa1451560:intron | 25.0% |
| !! | TTTTGTGTGACATATTTTCA+GGG | - | tig0033459:6236-6255 | Msa1451560:intron | 25.0% |
| ! | TTATAGAATGATAAGTGGAT+TGG | - | tig0033459:6259-6278 | Msa1451560:intron | 25.0% |
| !! | TTTTTGTAGTTTCAGTACTT+GGG | + | tig0033459:6349-6368 | None:intergenic | 25.0% |
| !! | ATTTTTGTAGTTTCAGTACT+TGG | + | tig0033459:6350-6369 | None:intergenic | 25.0% |
| !! | AGTACTGAAACTACAAAAAT+AGG | - | tig0033459:6350-6369 | Msa1451560:CDS | 25.0% |
| !!! | ACTGTTTTCTTGATTTGTTT+AGG | + | tig0033459:6656-6675 | None:intergenic | 25.0% |
| ! | CTATTATTAGGTAAAGAGTA+AGG | + | tig0033459:6872-6891 | None:intergenic | 25.0% |
| !!! | TAATAGTTTGTTATGACTTC+AGG | - | tig0033459:6886-6905 | Msa1451560:intron | 25.0% |
| ! | TAAGACTTAAATTGGTACAT+TGG | - | tig0033459:6991-7010 | Msa1451560:intron | 25.0% |
| ! | CATATGATGGAAATGAAATC+AGG | - | tig0033459:5821-5840 | Msa1451560:three_prime_UTR | 30.0% |
| TTTCTTAGACATCATCATAG+AGG | - | tig0033459:6026-6045 | Msa1451560:intron | 30.0% | |
| TCTTTAGTGAATTTAAGGAC+AGG | + | tig0033459:6202-6221 | None:intergenic | 30.0% | |
| AAACACAAGCAATGCATAAT+GGG | + | tig0033459:6618-6637 | None:intergenic | 30.0% | |
| AGTGTAAATGCTAAACTTTC+CGG | - | tig0033459:6673-6692 | Msa1451560:intron | 30.0% | |
| ! | TGTAATTTTGCAATTTGCAG+TGG | - | tig0033459:6833-6852 | Msa1451560:intron | 30.0% |
| GTCTAGATCAAAAGTTGTAA+AGG | + | tig0033459:6937-6956 | None:intergenic | 30.0% | |
| !! | ATGAATATCATTTTGGTCAC+AGG | - | tig0033459:7029-7048 | Msa1451560:CDS | 30.0% |
| ! | CATATGATGGAAATGAAATC+AGG | - | tig0033459:5821-5840 | Msa1451560:three_prime_UTR | 30.0% |
| TTTCTTAGACATCATCATAG+AGG | - | tig0033459:6026-6045 | Msa1451560:intron | 30.0% | |
| TCTTTAGTGAATTTAAGGAC+AGG | + | tig0033459:6202-6221 | None:intergenic | 30.0% | |
| AAACACAAGCAATGCATAAT+GGG | + | tig0033459:6618-6637 | None:intergenic | 30.0% | |
| AGTGTAAATGCTAAACTTTC+CGG | - | tig0033459:6673-6692 | Msa1451560:intron | 30.0% | |
| ! | TGTAATTTTGCAATTTGCAG+TGG | - | tig0033459:6833-6852 | Msa1451560:intron | 30.0% |
| GTCTAGATCAAAAGTTGTAA+AGG | + | tig0033459:6937-6956 | None:intergenic | 30.0% | |
| AGATTCAGAAATCCGTATAG+CGG | - | tig0033459:5677-5696 | Msa1451560:three_prime_UTR | 35.0% | |
| TTAAATGTCTCACCGCTATA+CGG | + | tig0033459:5692-5711 | None:intergenic | 35.0% | |
| CAGGGTTATAGAATGATAAG+TGG | - | tig0033459:6254-6273 | Msa1451560:intron | 35.0% | |
| ATATTCGGACTGTAAACATG+TGG | + | tig0033459:6422-6441 | None:intergenic | 35.0% | |
| ! | AACACAAATCGGAGTATTTC+AGG | - | tig0033459:6475-6494 | Msa1451560:intron | 35.0% |
| ! | AAATCGGAGTATTTCAGGAA+TGG | - | tig0033459:6480-6499 | Msa1451560:intron | 35.0% |
| ! | CAATGCATAATGGGAAAGTT+TGG | + | tig0033459:6609-6628 | None:intergenic | 35.0% |
| CAAACACAAGCAATGCATAA+TGG | + | tig0033459:6619-6638 | None:intergenic | 35.0% | |
| ACAAGATACACAAACACAAC+CGG | + | tig0033459:6695-6714 | None:intergenic | 35.0% | |
| !! | GTTTGTTATGACTTCAGGAT+TGG | - | tig0033459:6891-6910 | Msa1451560:intron | 35.0% |
| AGATTCAGAAATCCGTATAG+CGG | - | tig0033459:5677-5696 | Msa1451560:three_prime_UTR | 35.0% | |
| TTAAATGTCTCACCGCTATA+CGG | + | tig0033459:5692-5711 | None:intergenic | 35.0% | |
| CAGGGTTATAGAATGATAAG+TGG | - | tig0033459:6254-6273 | Msa1451560:intron | 35.0% | |
| ATATTCGGACTGTAAACATG+TGG | + | tig0033459:6422-6441 | None:intergenic | 35.0% | |
| ! | AACACAAATCGGAGTATTTC+AGG | - | tig0033459:6475-6494 | Msa1451560:intron | 35.0% |
| ! | AAATCGGAGTATTTCAGGAA+TGG | - | tig0033459:6480-6499 | Msa1451560:intron | 35.0% |
| ! | CAATGCATAATGGGAAAGTT+TGG | + | tig0033459:6609-6628 | None:intergenic | 35.0% |
| CAAACACAAGCAATGCATAA+TGG | + | tig0033459:6619-6638 | None:intergenic | 35.0% | |
| ACAAGATACACAAACACAAC+CGG | + | tig0033459:6695-6714 | None:intergenic | 35.0% | |
| !! | GTTTGTTATGACTTCAGGAT+TGG | - | tig0033459:6891-6910 | Msa1451560:intron | 35.0% |
| ! | AGTCTTGTATTTGCAGCAAG+AGG | + | tig0033459:5980-5999 | None:intergenic | 40.0% |
| GGCCGTTGTAAAGAAAATTC+AGG | - | tig0033459:6139-6158 | Msa1451560:CDS | 40.0% | |
| TGTAGTTTCAGTACTTGGGT+CGG | + | tig0033459:6345-6364 | None:intergenic | 40.0% | |
| CTAGATATAACTGCTGCATG+CGG | - | tig0033459:6506-6525 | Msa1451560:intron | 40.0% | |
| CGCTTTCGATGATGAAGATA+CGG | + | tig0033459:6748-6767 | None:intergenic | 40.0% | |
| AGCTCAACCTATTGTGATGA+CGG | - | tig0033459:6774-6793 | Msa1451560:intron | 40.0% | |
| !!! | GATTTTAGTTTGCACAGCAC+AGG | - | tig0033459:6803-6822 | Msa1451560:intron | 40.0% |
| ! | TTTTGCAATTTGCAGTGGTG+TGG | - | tig0033459:6838-6857 | Msa1451560:intron | 40.0% |
| TTGATCTAGACTTGAGCGTT+TGG | - | tig0033459:6946-6965 | Msa1451560:intron | 40.0% | |
| ! | AGTCTTGTATTTGCAGCAAG+AGG | + | tig0033459:5980-5999 | None:intergenic | 40.0% |
| GGCCGTTGTAAAGAAAATTC+AGG | - | tig0033459:6139-6158 | Msa1451560:CDS | 40.0% | |
| TGTAGTTTCAGTACTTGGGT+CGG | + | tig0033459:6345-6364 | None:intergenic | 40.0% | |
| CTAGATATAACTGCTGCATG+CGG | - | tig0033459:6506-6525 | Msa1451560:intron | 40.0% | |
| CGCTTTCGATGATGAAGATA+CGG | + | tig0033459:6748-6767 | None:intergenic | 40.0% | |
| AGCTCAACCTATTGTGATGA+CGG | - | tig0033459:6774-6793 | Msa1451560:intron | 40.0% | |
| !!! | GATTTTAGTTTGCACAGCAC+AGG | - | tig0033459:6803-6822 | Msa1451560:intron | 40.0% |
| ! | TTTTGCAATTTGCAGTGGTG+TGG | - | tig0033459:6838-6857 | Msa1451560:intron | 40.0% |
| TTGATCTAGACTTGAGCGTT+TGG | - | tig0033459:6946-6965 | Msa1451560:intron | 40.0% | |
| GCAGCAAGAGGAAGATTCTT+AGG | + | tig0033459:5968-5987 | None:intergenic | 45.0% | |
| CATATCTCCATCAAGCACCA+CGG | + | tig0033459:6293-6312 | None:intergenic | 45.0% | |
| CGGACTGTAAACATGTGGAA+TGG | + | tig0033459:6417-6436 | None:intergenic | 45.0% | |
| ! | TTTTGCAGGAACAGCTGCAA+AGG | - | tig0033459:6576-6595 | Msa1451560:intron | 45.0% |
| AAGATACGGACCCATTCCTA+CGG | + | tig0033459:6734-6753 | None:intergenic | 45.0% | |
| CTATCAGCCGTCATCACAAT+AGG | + | tig0033459:6784-6803 | None:intergenic | 45.0% | |
| GCAGCAAGAGGAAGATTCTT+AGG | + | tig0033459:5968-5987 | None:intergenic | 45.0% | |
| CATATCTCCATCAAGCACCA+CGG | + | tig0033459:6293-6312 | None:intergenic | 45.0% | |
| CGGACTGTAAACATGTGGAA+TGG | + | tig0033459:6417-6436 | None:intergenic | 45.0% | |
| ! | TTTTGCAGGAACAGCTGCAA+AGG | - | tig0033459:6576-6595 | Msa1451560:intron | 45.0% |
| AAGATACGGACCCATTCCTA+CGG | + | tig0033459:6734-6753 | None:intergenic | 45.0% | |
| CTATCAGCCGTCATCACAAT+AGG | + | tig0033459:6784-6803 | None:intergenic | 45.0% | |
| !! | TCTGCTGATCCTGCTTTTGC+AGG | - | tig0033459:6562-6581 | Msa1451560:intron | 50.0% |
| CTGCAAGAAGCCGTAGGAAT+GGG | - | tig0033459:6721-6740 | Msa1451560:intron | 50.0% | |
| !! | TCTGCTGATCCTGCTTTTGC+AGG | - | tig0033459:6562-6581 | Msa1451560:intron | 50.0% |
| CTGCAAGAAGCCGTAGGAAT+GGG | - | tig0033459:6721-6740 | Msa1451560:intron | 50.0% | |
| GCAGCTGTTCCTGCAAAAGC+AGG | + | tig0033459:6574-6593 | None:intergenic | 55.0% | |
| GCTGCAAGAAGCCGTAGGAA+TGG | - | tig0033459:6720-6739 | Msa1451560:intron | 55.0% | |
| GCAGCTGTTCCTGCAAAAGC+AGG | + | tig0033459:6574-6593 | None:intergenic | 55.0% | |
| GCTGCAAGAAGCCGTAGGAA+TGG | - | tig0033459:6720-6739 | Msa1451560:intron | 55.0% | |
| !! | GTGGATTGGTGTCTCGACCG+TGG | - | tig0033459:6273-6292 | Msa1451560:intron | 60.0% |
| GTCTCGACCGTGGTGCTTGA+TGG | - | tig0033459:6283-6302 | Msa1451560:intron | 60.0% | |
| GTGCAGCTGCAAGAAGCCGT+AGG | - | tig0033459:6715-6734 | Msa1451560:intron | 60.0% | |
| !! | GTGGATTGGTGTCTCGACCG+TGG | - | tig0033459:6273-6292 | Msa1451560:intron | 60.0% |
| GTCTCGACCGTGGTGCTTGA+TGG | - | tig0033459:6283-6302 | Msa1451560:intron | 60.0% | |
| GTGCAGCTGCAAGAAGCCGT+AGG | - | tig0033459:6715-6734 | Msa1451560:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033459 | gene | 5651 | 7049 | 5651 | ID=Msa1451560;Name=Msa1451560 |
| tig0033459 | mRNA | 5651 | 7049 | 5651 | ID=Msa1451560-mRNA-1;Parent=Msa1451560;Name=Msa1451560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.75|1|1|1|4|239|117 |
| tig0033459 | exon | 5651 | 5979 | 5651 | ID=Msa1451560-mRNA-1:exon:18105;Parent=Msa1451560-mRNA-1 |
| tig0033459 | exon | 6103 | 6203 | 6103 | ID=Msa1451560-mRNA-1:exon:18104;Parent=Msa1451560-mRNA-1 |
| tig0033459 | exon | 6329 | 6443 | 6329 | ID=Msa1451560-mRNA-1:exon:18103;Parent=Msa1451560-mRNA-1 |
| tig0033459 | exon | 7002 | 7049 | 7002 | ID=Msa1451560-mRNA-1:exon:18102;Parent=Msa1451560-mRNA-1 |
| tig0033459 | CDS | 7002 | 7049 | 7002 | ID=Msa1451560-mRNA-1:cds;Parent=Msa1451560-mRNA-1 |
| tig0033459 | CDS | 6329 | 6443 | 6329 | ID=Msa1451560-mRNA-1:cds;Parent=Msa1451560-mRNA-1 |
| tig0033459 | CDS | 6103 | 6203 | 6103 | ID=Msa1451560-mRNA-1:cds;Parent=Msa1451560-mRNA-1 |
| tig0033459 | CDS | 5890 | 5979 | 5890 | ID=Msa1451560-mRNA-1:cds;Parent=Msa1451560-mRNA-1 |
| tig0033459 | three_prime_UTR | 5651 | 5889 | 5651 | ID=Msa1451560-mRNA-1:three_prime_utr;Parent=Msa1451560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
