Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374930 | XP_013461302.1 | 100.000 | 125 | 0 | 0 | 1 | 125 | 1 | 125 | 1.48e-81 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374930 | sp|Q5Q995|KTAP2_IXOSC | 37.405 | 131 | 72 | 2 | 4 | 124 | 5 | 135 | 1.01e-20 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374930 | I3T7J3 | 100.000 | 125 | 0 | 0 | 1 | 125 | 1 | 125 | 7.06e-82 | 245 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0374930 | 0.855667 | 5.407732e-62 | -8.615850e-47 |
| Msa0027260 | Msa0374930 | 0.806420 | 8.297199e-50 | -8.615850e-47 |
| Msa0049370 | Msa0374930 | 0.830744 | 2.471351e-55 | -8.615850e-47 |
| Msa0056470 | Msa0374930 | 0.804576 | 2.021318e-49 | -8.615850e-47 |
| Msa0072420 | Msa0374930 | 0.829281 | 5.621087e-55 | -8.615850e-47 |
| Msa0075170 | Msa0374930 | 0.812139 | 4.927435e-51 | -8.615850e-47 |
| Msa0100740 | Msa0374930 | 0.801806 | 7.569203e-49 | -8.615850e-47 |
| Msa0140820 | Msa0374930 | 0.836467 | 9.199205e-57 | -8.615850e-47 |
| Msa0140850 | Msa0374930 | 0.815988 | 6.971068e-52 | -8.615850e-47 |
| Msa0204960 | Msa0374930 | 0.800438 | 1.441350e-48 | -8.615850e-47 |
| Msa0232010 | Msa0374930 | 0.804666 | 1.936314e-49 | -8.615850e-47 |
| Msa0232080 | Msa0374930 | 0.804840 | 1.781074e-49 | -8.615850e-47 |
| Msa0369450 | Msa0374930 | 0.815725 | 7.979017e-52 | -8.615850e-47 |
| Msa0374930 | Msa0380300 | 0.816327 | 5.855187e-52 | -8.615850e-47 |
| Msa0374930 | Msa0395820 | 0.838903 | 2.181023e-57 | -8.615850e-47 |
| Msa0374930 | Msa0423750 | 0.818797 | 1.625062e-52 | -8.615850e-47 |
| Msa0374930 | Msa0521050 | 0.840551 | 8.122381e-58 | -8.615850e-47 |
| Msa0374930 | Msa0524500 | 0.815432 | 9.274801e-52 | -8.615850e-47 |
| Msa0374930 | Msa0581110 | 0.808876 | 2.496584e-50 | -8.615850e-47 |
| Msa0374930 | Msa0588360 | 0.827220 | 1.764296e-54 | -8.615850e-47 |
| Msa0374930 | Msa0608320 | 0.820163 | 7.928840e-53 | -8.615850e-47 |
| Msa0374930 | Msa0669520 | 0.842146 | 3.090023e-58 | -8.615850e-47 |
| Msa0374930 | Msa0687030 | 0.808162 | 3.546364e-50 | -8.615850e-47 |
| Msa0374930 | Msa0692980 | 0.806250 | 9.010823e-50 | -8.615850e-47 |
| Msa0374930 | Msa0698780 | 0.800695 | 1.277591e-48 | -8.615850e-47 |
| Msa0374930 | Msa0765080 | 0.805429 | 1.340682e-49 | -8.615850e-47 |
| Msa0374930 | Msa0792760 | 0.823823 | 1.125316e-53 | -8.615850e-47 |
| Msa0374930 | Msa0808800 | 0.856843 | 2.446343e-62 | -8.615850e-47 |
| Msa0374930 | Msa0970060 | 0.812915 | 3.333469e-51 | -8.615850e-47 |
| Msa0374930 | Msa1059300 | 0.801445 | 8.972772e-49 | -8.615850e-47 |
| Msa0374930 | Msa1078170 | 0.807603 | 4.663381e-50 | -8.615850e-47 |
| Msa0374930 | Msa1081930 | 0.824881 | 6.346127e-54 | -8.615850e-47 |
| Msa0374930 | Msa1126830 | 0.806296 | 8.814801e-50 | -8.615850e-47 |
| Msa0374930 | Msa1165230 | 0.807376 | 5.209629e-50 | -8.615850e-47 |
| Msa0374930 | Msa1165940 | 0.813175 | 2.924168e-51 | -8.615850e-47 |
| Msa0374930 | Msa1243740 | -0.801166 | 1.023686e-48 | -8.615850e-47 |
| Msa0374930 | Msa1244600 | 0.809171 | 2.158538e-50 | -8.615850e-47 |
| Msa0374930 | Msa1254730 | 0.816495 | 5.370244e-52 | -8.615850e-47 |
| Msa0374930 | Msa1305700 | 0.817778 | 2.764043e-52 | -8.615850e-47 |
| Msa0374930 | Msa1341060 | 0.800866 | 1.178774e-48 | -8.615850e-47 |
| Msa0374930 | Msa1345100 | 0.820365 | 7.128968e-53 | -8.615850e-47 |
| Msa0374930 | Msa1376650 | 0.806027 | 1.003903e-49 | -8.615850e-47 |
| Msa0374930 | Msa1451160 | 0.809923 | 1.488024e-50 | -8.615850e-47 |
| Msa0249580 | Msa0374930 | 0.814940 | 1.192618e-51 | -8.615850e-47 |
| Msa0249860 | Msa0374930 | 0.836852 | 7.337449e-57 | -8.615850e-47 |
| Msa0257490 | Msa0374930 | 0.801178 | 1.017631e-48 | -8.615850e-47 |
| Msa0326480 | Msa0374930 | 0.829504 | 4.962240e-55 | -8.615850e-47 |
| Msa0357900 | Msa0374930 | 0.815294 | 9.950235e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374930 | MtrunA17_Chr3g0125171 | 100.000 | 125 | 0 | 0 | 1 | 125 | 1 | 125 | 1.36e-85 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374930 | AT1G77350.1 | 74.590 | 122 | 30 | 1 | 1 | 121 | 1 | 122 | 3.32e-60 | 181 |
| Msa0374930 | AT1G77350.2 | 74.590 | 122 | 30 | 1 | 1 | 121 | 1 | 122 | 3.32e-60 | 181 |
Find 44 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTATTTCATGGGTAAAT+TGG | 0.186265 | 3_1:+74478756 | Msa0374930:five_prime_UTR |
| GAGAAGGCCATGGCGGGGTC+TGG | 0.282341 | 3_1:+74479985 | Msa0374930:intron |
| AGTACTTACCTACTATTTCA+TGG | 0.354216 | 3_1:+74478747 | Msa0374930:five_prime_UTR |
| AGAAGGCCATGGCGGGGTCT+GGG | 0.375513 | 3_1:+74479986 | Msa0374930:intron |
| CATCTTGTGAATCTTGAGTT+AGG | 0.382414 | 3_1:+74478885 | Msa0374930:five_prime_UTR |
| ATCTTATAAGTTATGATACT+AGG | 0.383609 | 3_1:-74482290 | None:intergenic |
| GAGACAGCCGGTGCAAAATC+TGG | 0.384994 | 3_1:+74480805 | Msa0374930:CDS |
| TGAATGCAGTTTCCTGTTCT+CGG | 0.393893 | 3_1:+74482112 | Msa0374930:intron |
| GCAAAATCTGGCTGGGGTGC+TGG | 0.425345 | 3_1:+74480817 | Msa0374930:CDS |
| TCGGAATTATTCACAATACT+TGG | 0.430748 | 3_1:+74480087 | Msa0374930:CDS |
| TGCTATGAGAAGGCCATGGC+GGG | 0.435900 | 3_1:+74479979 | Msa0374930:intron |
| CTCGGCTGTGTTGCTCTATG+AGG | 0.447834 | 3_1:+74482130 | Msa0374930:CDS |
| AGAGCAACACAGCCGAGAAC+AGG | 0.475210 | 3_1:-74482124 | None:intergenic |
| AGCCGGTGCAAAATCTGGCT+GGG | 0.475968 | 3_1:+74480810 | Msa0374930:CDS |
| CAGCCGGTGCAAAATCTGGC+TGG | 0.479798 | 3_1:+74480809 | Msa0374930:CDS |
| TTGTAAAACTATTGCGACTA+GGG | 0.496217 | 3_1:-74482266 | None:intergenic |
| GATGACAATGAATAGAAGAA+AGG | 0.500365 | 3_1:-74480025 | None:intergenic |
| CGAATACCCAAGGGCAATCT+CGG | 0.501828 | 3_1:-74478805 | None:intergenic |
| TATGAGGTTAACAAGCTCTC+TGG | 0.505681 | 3_1:+74482146 | Msa0374930:CDS |
| TTAAATACCGAGATTGCCCT+TGG | 0.510093 | 3_1:+74478798 | Msa0374930:five_prime_UTR |
| CAATTTACCCATGAAATAGT+AGG | 0.515323 | 3_1:-74478755 | None:intergenic |
| TAGAAGAAAGGAATACATCA+TGG | 0.524516 | 3_1:-74480013 | None:intergenic |
| GTACTTACCTACTATTTCAT+GGG | 0.531636 | 3_1:+74478748 | Msa0374930:five_prime_UTR |
| TCTTATAAGTTATGATACTA+GGG | 0.531858 | 3_1:-74482289 | None:intergenic |
| GAATTATTCACAATACTTGG+AGG | 0.534232 | 3_1:+74480090 | Msa0374930:CDS |
| AATTATTCACAATACTTGGA+GGG | 0.538766 | 3_1:+74480091 | Msa0374930:CDS |
| ACCATGTAGTGATGCATACT+CGG | 0.544399 | 3_1:-74481122 | None:intergenic |
| GTTTCTACGGCGAATACCCA+AGG | 0.549681 | 3_1:-74478815 | None:intergenic |
| GCCGGTGCAAAATCTGGCTG+GGG | 0.558097 | 3_1:+74480811 | Msa0374930:CDS |
| CCGTGGGAAACTTGCATCGT+CGG | 0.565118 | 3_1:+74480068 | Msa0374930:CDS |
| TAAATACCGAGATTGCCCTT+GGG | 0.585124 | 3_1:+74478799 | Msa0374930:five_prime_UTR |
| CACTTCAAGAAATGTACCGT+GGG | 0.587600 | 3_1:+74480052 | Msa0374930:CDS |
| ACCGAGTATGCATCACTACA+TGG | 0.601750 | 3_1:+74481121 | Msa0374930:CDS |
| GTTGTAAAACTATTGCGACT+AGG | 0.603827 | 3_1:-74482267 | None:intergenic |
| GGAACTCCCAGACCCCGCCA+TGG | 0.620572 | 3_1:-74479992 | None:intergenic |
| TTGCTATGAGAAGGCCATGG+CGG | 0.626779 | 3_1:+74479978 | Msa0374930:intron |
| GTAGAAACTAAAACGTGTGA+AGG | 0.632281 | 3_1:+74478830 | Msa0374930:five_prime_UTR |
| GGTACATTTCTTGAAGTGAG+AGG | 0.637005 | 3_1:-74480047 | None:intergenic |
| GCTATGAGAAGGCCATGGCG+GGG | 0.660761 | 3_1:+74479980 | Msa0374930:intron |
| CCGACGATGCAAGTTTCCCA+CGG | 0.661665 | 3_1:-74480068 | None:intergenic |
| GGAGTCACTTGTTGAAACAG+CGG | 0.662603 | 3_1:-74482171 | None:intergenic |
| TTTCTACGGCGAATACCCAA+GGG | 0.663067 | 3_1:-74478814 | None:intergenic |
| TCACTTCAAGAAATGTACCG+TGG | 0.674064 | 3_1:+74480051 | Msa0374930:CDS |
| ATGTAGTGATGCATACTCGG+TGG | 0.725698 | 3_1:-74481119 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATATTTAACTTATTTTT+AGG | + | chr3_1:74478687-74478706 | Msa0374930:five_prime_UTR | 10.0% |
| !!! | TCATATTTAACTTATTTTTA+GGG | + | chr3_1:74478688-74478707 | Msa0374930:five_prime_UTR | 10.0% |
| !!! | ACTTAATTTTACAATTATAT+TGG | + | chr3_1:74482336-74482355 | Msa0374930:three_prime_UTR | 10.0% |
| !!! | CATATTTAACTTATTTTTAG+GGG | + | chr3_1:74478689-74478708 | Msa0374930:five_prime_UTR | 15.0% |
| !!! | TGTTTATTTTTTGTTTTCTT+TGG | + | chr3_1:74479174-74479193 | Msa0374930:intron | 15.0% |
| !!! | GTTTATTTTTTGTTTTCTTT+GGG | + | chr3_1:74479175-74479194 | Msa0374930:intron | 15.0% |
| !!! | TTTATTTTTTGTTTTCTTTG+GGG | + | chr3_1:74479176-74479195 | Msa0374930:intron | 15.0% |
| !!! | TTTTAACTTGATTTTATCTT+TGG | - | chr3_1:74479336-74479355 | None:intergenic | 15.0% |
| !!! | TTACTTTGTTATAACTAATA+AGG | + | chr3_1:74479852-74479871 | Msa0374930:intron | 15.0% |
| !!! | TACTTTGTTATAACTAATAA+GGG | + | chr3_1:74479853-74479872 | Msa0374930:intron | 15.0% |
| !! | TAAAATAGATGTTATAGAAA+TGG | - | chr3_1:74480320-74480339 | None:intergenic | 15.0% |
| !!! | AACTATTTCTTAAAAAGAAA+AGG | + | chr3_1:74481222-74481241 | Msa0374930:intron | 15.0% |
| !!! | ACTATTTCTTAAAAAGAAAA+GGG | + | chr3_1:74481223-74481242 | Msa0374930:intron | 15.0% |
| !!! | TTTTCAATGTAATTTGTTAT+TGG | - | chr3_1:74481679-74481698 | None:intergenic | 15.0% |
| !!! | TTTTCAATGTAATTTGTTAT+TGG | - | chr3_1:74481679-74481698 | None:intergenic | 15.0% |
| !!! | ATTTTACAATTATATTGGTA+TGG | + | chr3_1:74482341-74482360 | Msa0374930:three_prime_UTR | 15.0% |
| !!! | TGATCTAGTAATTTGAAATT+AGG | + | chr3_1:74479049-74479068 | Msa0374930:intron | 20.0% |
| !! | AACATTATTATTAGATCCAT+TGG | + | chr3_1:74479126-74479145 | Msa0374930:intron | 20.0% |
| !! | ACATTATTATTAGATCCATT+GGG | + | chr3_1:74479127-74479146 | Msa0374930:intron | 20.0% |
| !! | AGAAAACAAAAAATAAACAC+CGG | - | chr3_1:74479173-74479192 | None:intergenic | 20.0% |
| !!! | AATGAATTTTTGAAAACCAT+AGG | + | chr3_1:74479521-74479540 | Msa0374930:intron | 20.0% |
| !!! | TATTATTCATAAGCTTGTTT+AGG | + | chr3_1:74479597-74479616 | Msa0374930:intron | 20.0% |
| !!! | TATGAAGATACAATTTTTGT+TGG | + | chr3_1:74479640-74479659 | Msa0374930:intron | 20.0% |
| !!! | ATGATTCTTTTTATGTTTCT+CGG | + | chr3_1:74480218-74480237 | Msa0374930:intron | 20.0% |
| !! | TAATAAGATCATATACTAGA+AGG | + | chr3_1:74480242-74480261 | Msa0374930:intron | 20.0% |
| !! | TTAATACTATTGTTAGTGTT+TGG | + | chr3_1:74480337-74480356 | Msa0374930:intron | 20.0% |
| !! | TAATACTATTGTTAGTGTTT+GGG | + | chr3_1:74480338-74480357 | Msa0374930:intron | 20.0% |
| !! | ATTTATTTGTACTTGTATGA+AGG | + | chr3_1:74480392-74480411 | Msa0374930:intron | 20.0% |
| !!! | ATTTTGATGCATTTTATTAG+AGG | - | chr3_1:74480422-74480441 | None:intergenic | 20.0% |
| !! | GATAAAAGTAGTAACTTTAT+TGG | - | chr3_1:74480506-74480525 | None:intergenic | 20.0% |
| !! | TAAAATAAAGCAGACTATTT+GGG | - | chr3_1:74480671-74480690 | None:intergenic | 20.0% |
| !! | ATAAAATAAAGCAGACTATT+TGG | - | chr3_1:74480672-74480691 | None:intergenic | 20.0% |
| !! | AAAACAGAATGAGTATTAAT+TGG | + | chr3_1:74480912-74480931 | Msa0374930:intron | 20.0% |
| !!! | TTCATTTCTTTTATTCTTTC+TGG | + | chr3_1:74480996-74481015 | Msa0374930:intron | 20.0% |
| !!! | TTTAAAATATATGCGTGAAT+TGG | - | chr3_1:74481027-74481046 | None:intergenic | 20.0% |
| !! | TCCTATTTGTTCATTAATAA+GGG | - | chr3_1:74481174-74481193 | None:intergenic | 20.0% |
| !! | TTCCTATTTGTTCATTAATA+AGG | - | chr3_1:74481175-74481194 | None:intergenic | 20.0% |
| !! | CAATGATACAATTAATTAAG+CGG | + | chr3_1:74481308-74481327 | Msa0374930:intron | 20.0% |
| !! | AATGATACAATTAATTAAGC+GGG | + | chr3_1:74481309-74481328 | Msa0374930:intron | 20.0% |
| !! | ATAGTTAGTAATACATGTAA+TGG | + | chr3_1:74481535-74481554 | Msa0374930:intron | 20.0% |
| !! | TAGTTAGTAATACATGTAAT+GGG | + | chr3_1:74481536-74481555 | Msa0374930:intron | 20.0% |
| !! | TTACATTGAAAAAGAAAAAC+TGG | + | chr3_1:74481687-74481706 | Msa0374930:intron | 20.0% |
| !! | TTACATTGAAAAAGAAAAAC+TGG | + | chr3_1:74481687-74481706 | Msa0374930:intron | 20.0% |
| !!! | ATATAACATGCTTTTACTTT+AGG | + | chr3_1:74481866-74481885 | Msa0374930:intron | 20.0% |
| !! | TCTTATAAGTTATGATACTA+GGG | - | chr3_1:74482292-74482311 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTTATGATACT+AGG | - | chr3_1:74482293-74482312 | None:intergenic | 20.0% |
| !! | GTAATATAAAAATGACTGAT+TGG | - | chr3_1:74482399-74482418 | None:intergenic | 20.0% |
| !!! | ATCAGTCATTTTTATATTAC+AGG | + | chr3_1:74482399-74482418 | Msa0374930:three_prime_UTR | 20.0% |
| ! | GAAATAAAATGAAGATCCAT+TGG | - | chr3_1:74478975-74478994 | None:intergenic | 25.0% |
| ! | TTAAACTGTATATCCAAACA+GGG | - | chr3_1:74479271-74479290 | None:intergenic | 25.0% |
| ! | ATTAAACTGTATATCCAAAC+AGG | - | chr3_1:74479272-74479291 | None:intergenic | 25.0% |
| !!! | AAGCTATAAGTTGTTTTCAT+TGG | + | chr3_1:74479369-74479388 | Msa0374930:intron | 25.0% |
| ! | AATTATTCACAATACTTGGA+GGG | + | chr3_1:74480091-74480110 | Msa0374930:CDS | 25.0% |
| ! | AAGCTTCAAAGATAAGAAAA+TGG | - | chr3_1:74480182-74480201 | None:intergenic | 25.0% |
| !! | TGATTCTTTTTATGTTTCTC+GGG | + | chr3_1:74480219-74480238 | Msa0374930:intron | 25.0% |
| ! | TTCAATTTACAAAATGGAAC+TGG | - | chr3_1:74480463-74480482 | None:intergenic | 25.0% |
| ! | TCTGACTTCAATTTACAAAA+TGG | - | chr3_1:74480469-74480488 | None:intergenic | 25.0% |
| ! | TTTATCACTTCATAGTTCAT+AGG | + | chr3_1:74480520-74480539 | Msa0374930:intron | 25.0% |
| !! | CTCACATTTACATTACATTT+TGG | + | chr3_1:74480758-74480777 | Msa0374930:intron | 25.0% |
| ! | TCCCTTATTAATGAACAAAT+AGG | + | chr3_1:74481170-74481189 | Msa0374930:intron | 25.0% |
| ! | CGCTTAATTAATTGTATCAT+TGG | - | chr3_1:74481310-74481329 | None:intergenic | 25.0% |
| ! | ATGATACAATTAATTAAGCG+GGG | + | chr3_1:74481310-74481329 | Msa0374930:intron | 25.0% |
| !!! | ACTATAAGTTGATTAGTTGA+AGG | - | chr3_1:74481379-74481398 | None:intergenic | 25.0% |
| ! | TCAACACATTATATCTGTTT+AGG | - | chr3_1:74481472-74481491 | None:intergenic | 25.0% |
| ! | TTTATAAGAACATGTTCCAA+AGG | - | chr3_1:74481570-74481589 | None:intergenic | 25.0% |
| ! | TTGAATTCTAGATATTCTGT+TGG | + | chr3_1:74481644-74481663 | Msa0374930:intron | 25.0% |
| ! | TGAATTCTAGATATTCTGTT+GGG | + | chr3_1:74481645-74481664 | Msa0374930:intron | 25.0% |
| ! | TTGAATTCTAGATATTCTGT+TGG | + | chr3_1:74481644-74481663 | Msa0374930:intron | 25.0% |
| ! | TGAATTCTAGATATTCTGTT+GGG | + | chr3_1:74481645-74481664 | Msa0374930:intron | 25.0% |
| !!! | GCTATTTTACAAAAAGCTTT+AGG | - | chr3_1:74481911-74481930 | None:intergenic | 25.0% |
| ! | TAAATAACAGACTATGACAA+TGG | - | chr3_1:74481962-74481981 | None:intergenic | 25.0% |
| ! | CATTAGAATAACATCAACAA+TGG | - | chr3_1:74482083-74482102 | None:intergenic | 25.0% |
| TTGCAACATTGAAAAAGACA+CGG | + | chr3_1:74478718-74478737 | Msa0374930:five_prime_UTR | 30.0% | |
| AGTACTTACCTACTATTTCA+TGG | + | chr3_1:74478747-74478766 | Msa0374930:five_prime_UTR | 30.0% | |
| GTACTTACCTACTATTTCAT+GGG | + | chr3_1:74478748-74478767 | Msa0374930:five_prime_UTR | 30.0% | |
| CAATTTACCCATGAAATAGT+AGG | - | chr3_1:74478758-74478777 | None:intergenic | 30.0% | |
| CTACTATTTCATGGGTAAAT+TGG | + | chr3_1:74478756-74478775 | Msa0374930:five_prime_UTR | 30.0% | |
| !!! | TTCACACGTTTTAGTTTCTA+CGG | - | chr3_1:74478831-74478850 | None:intergenic | 30.0% |
| TACATACTAGCATAAACACT+TGG | - | chr3_1:74479446-74479465 | None:intergenic | 30.0% | |
| AAAAATAAGCCAATCCAAAC+AGG | - | chr3_1:74479547-74479566 | None:intergenic | 30.0% | |
| !! | TTTATAGTCAAGTTGAGAAC+TGG | - | chr3_1:74479737-74479756 | None:intergenic | 30.0% |
| ! | TCATTCTTGAGTGATACTTT+TGG | + | chr3_1:74479913-74479932 | Msa0374930:intron | 30.0% |
| !!! | TGAGTGATACTTTTGGTTTT+CGG | + | chr3_1:74479920-74479939 | Msa0374930:intron | 30.0% |
| TAGAAGAAAGGAATACATCA+TGG | - | chr3_1:74480016-74480035 | None:intergenic | 30.0% | |
| GATGACAATGAATAGAAGAA+AGG | - | chr3_1:74480028-74480047 | None:intergenic | 30.0% | |
| TCGGAATTATTCACAATACT+TGG | + | chr3_1:74480087-74480106 | Msa0374930:CDS | 30.0% | |
| GAATTATTCACAATACTTGG+AGG | + | chr3_1:74480090-74480109 | Msa0374930:CDS | 30.0% | |
| AAGAATCATTAGCAAACTAC+AGG | - | chr3_1:74480207-74480226 | None:intergenic | 30.0% | |
| TGTTATAGAAATGGAGTAAG+TGG | - | chr3_1:74480311-74480330 | None:intergenic | 30.0% | |
| TCCTACTTTAACAAATACAG+AGG | + | chr3_1:74480570-74480589 | Msa0374930:intron | 30.0% | |
| ! | TCCTCTGTATTTGTTAAAGT+AGG | - | chr3_1:74480574-74480593 | None:intergenic | 30.0% |
| TATTACTTGAATAGAGATCC+TGG | - | chr3_1:74480716-74480735 | None:intergenic | 30.0% | |
| CAAATAGGAAGTAATTCACT+AGG | + | chr3_1:74481185-74481204 | Msa0374930:intron | 30.0% | |
| !! | ATATAATGTGTTGATTCCGT+TGG | + | chr3_1:74481478-74481497 | Msa0374930:intron | 30.0% |
| ! | CTTATTAAAAGCACAACAAC+AGG | + | chr3_1:74481992-74482011 | Msa0374930:intron | 30.0% |
| TTGTAAAACTATTGCGACTA+GGG | - | chr3_1:74482269-74482288 | None:intergenic | 30.0% | |
| TGCAACATTGAAAAAGACAC+GGG | + | chr3_1:74478719-74478738 | Msa0374930:five_prime_UTR | 35.0% | |
| GTAGAAACTAAAACGTGTGA+AGG | + | chr3_1:74478830-74478849 | Msa0374930:five_prime_UTR | 35.0% | |
| CATCTTGTGAATCTTGAGTT+AGG | + | chr3_1:74478885-74478904 | Msa0374930:five_prime_UTR | 35.0% | |
| !!! | CATTGGTTTTGTAATTCCCT+TGG | - | chr3_1:74478958-74478977 | None:intergenic | 35.0% |
| CAAGGGAATTACAAAACCAA+TGG | + | chr3_1:74478956-74478975 | Msa0374930:intron | 35.0% | |
| ! | TTCATTTTGCAAGCGAAATC+CGG | + | chr3_1:74479151-74479170 | Msa0374930:intron | 35.0% |
| GGACTATATGGTAAGCATTT+CGG | - | chr3_1:74479250-74479269 | None:intergenic | 35.0% | |
| ATATCCAAACAGGGACTATA+TGG | - | chr3_1:74479262-74479281 | None:intergenic | 35.0% | |
| !! | GTTGTTTTCATTGGCTAACT+TGG | + | chr3_1:74479378-74479397 | Msa0374930:intron | 35.0% |
| GCTTAGGAAAATAAGCTGAA+AGG | + | chr3_1:74479404-74479423 | Msa0374930:intron | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr3_1:74479469-74479488 | Msa0374930:intron | 35.0% | |
| CTAAACTCTTCACATTGCTA+TGG | - | chr3_1:74479496-74479515 | None:intergenic | 35.0% | |
| ACTAGAGATTCCAAGCTATT+GGG | + | chr3_1:74479816-74479835 | Msa0374930:intron | 35.0% | |
| TTCTATAGAACCCAATAGCT+TGG | - | chr3_1:74479829-74479848 | None:intergenic | 35.0% | |
| ! | TGCTATTCTTTGCTATGAGA+AGG | + | chr3_1:74479969-74479988 | Msa0374930:intron | 35.0% |
| TCACTTCATAGTTCATAGGT+TGG | + | chr3_1:74480524-74480543 | Msa0374930:intron | 35.0% | |
| CTGTCACATATATATCTTCC+AGG | + | chr3_1:74480695-74480714 | Msa0374930:intron | 35.0% | |
| !!! | ACATTTTGGTTGCAGTTCAT+TGG | + | chr3_1:74480772-74480791 | Msa0374930:intron | 35.0% |
| ! | GCAGTTCATTGGAAATTTTC+AGG | + | chr3_1:74480783-74480802 | Msa0374930:intron | 35.0% |
| AGTCTGTCATCAACATTCAT+CGG | - | chr3_1:74480856-74480875 | None:intergenic | 35.0% | |
| CTTGAGAATCACATGAAACA+CGG | + | chr3_1:74480964-74480983 | Msa0374930:intron | 35.0% | |
| TTGAGAATCACATGAAACAC+GGG | + | chr3_1:74480965-74480984 | Msa0374930:intron | 35.0% | |
| ATGACTGCAAAAAGAAGACA+CGG | - | chr3_1:74481060-74481079 | None:intergenic | 35.0% | |
| TCATTAATAAGGGAGAGAGA+GGG | - | chr3_1:74481164-74481183 | None:intergenic | 35.0% | |
| TTCATTAATAAGGGAGAGAG+AGG | - | chr3_1:74481165-74481184 | None:intergenic | 35.0% | |
| ATTGGATCATTTAGACCAGA+GGG | - | chr3_1:74481292-74481311 | None:intergenic | 35.0% | |
| ! | AAGGTGATTTAAAATCAGCC+AGG | - | chr3_1:74481360-74481379 | None:intergenic | 35.0% |
| ! | CCATTTCTTTTACAAGCCAA+CGG | - | chr3_1:74481497-74481516 | None:intergenic | 35.0% |
| !! | TTGGCTTGTAAAAGAAATGG+TGG | + | chr3_1:74481497-74481516 | Msa0374930:intron | 35.0% |
| CATGAGCTTATGAAGGTAAA+GGG | - | chr3_1:74481614-74481633 | None:intergenic | 35.0% | |
| ACATGAGCTTATGAAGGTAA+AGG | - | chr3_1:74481615-74481634 | None:intergenic | 35.0% | |
| TACCTTCATAAGCTCATGTA+TGG | + | chr3_1:74481616-74481635 | Msa0374930:intron | 35.0% | |
| TACCATACATGAGCTTATGA+AGG | - | chr3_1:74481621-74481640 | None:intergenic | 35.0% | |
| TACCTTCATAAGCTCATGTA+TGG | + | chr3_1:74481616-74481635 | Msa0374930:intron | 35.0% | |
| TACCATACATGAGCTTATGA+AGG | - | chr3_1:74481621-74481640 | None:intergenic | 35.0% | |
| ! | ACTCTACTAGTTGCTTTACT+TGG | - | chr3_1:74481933-74481952 | None:intergenic | 35.0% |
| ! | TTAAAAGCACAACAACAGGA+TGG | + | chr3_1:74481996-74482015 | Msa0374930:intron | 35.0% |
| GTTGTAAAACTATTGCGACT+AGG | - | chr3_1:74482270-74482289 | None:intergenic | 35.0% | |
| TTAAATACCGAGATTGCCCT+TGG | + | chr3_1:74478798-74478817 | Msa0374930:five_prime_UTR | 40.0% | |
| TAAATACCGAGATTGCCCTT+GGG | + | chr3_1:74478799-74478818 | Msa0374930:five_prime_UTR | 40.0% | |
| TGAGAAAATGCGAGATTCCA+AGG | + | chr3_1:74478938-74478957 | Msa0374930:intron | 40.0% | |
| GAGAAAATGCGAGATTCCAA+GGG | + | chr3_1:74478939-74478958 | Msa0374930:intron | 40.0% | |
| TTGAGAACTTCAGATCGATG+TGG | + | chr3_1:74479097-74479116 | Msa0374930:intron | 40.0% | |
| GCTTGCAAAATGAAACCCAA+TGG | - | chr3_1:74479145-74479164 | None:intergenic | 40.0% | |
| GCATTTCGGCAACAAGAAAA+AGG | - | chr3_1:74479236-74479255 | None:intergenic | 40.0% | |
| CTTACCATATAGTCCCTGTT+TGG | + | chr3_1:74479255-74479274 | Msa0374930:intron | 40.0% | |
| TTGAAAACCATAGGCCTGTT+TGG | + | chr3_1:74479530-74479549 | Msa0374930:intron | 40.0% | |
| CACTAGAGATTCCAAGCTAT+TGG | + | chr3_1:74479815-74479834 | Msa0374930:intron | 40.0% | |
| GGTACATTTCTTGAAGTGAG+AGG | - | chr3_1:74480050-74480069 | None:intergenic | 40.0% | |
| TCACTTCAAGAAATGTACCG+TGG | + | chr3_1:74480051-74480070 | Msa0374930:CDS | 40.0% | |
| CACTTCAAGAAATGTACCGT+GGG | + | chr3_1:74480052-74480071 | Msa0374930:CDS | 40.0% | |
| GATTGTGAGAACTCACAGTT+AGG | - | chr3_1:74480146-74480165 | None:intergenic | 40.0% | |
| ACCATGTAGTGATGCATACT+CGG | - | chr3_1:74481125-74481144 | None:intergenic | 40.0% | |
| ! | AGAAAAGGGAGAAAGTGTGA+CGG | + | chr3_1:74481237-74481256 | Msa0374930:intron | 40.0% |
| TTGGATCATTTAGACCAGAG+GGG | - | chr3_1:74481291-74481310 | None:intergenic | 40.0% | |
| CATTGGATCATTTAGACCAG+AGG | - | chr3_1:74481293-74481312 | None:intergenic | 40.0% | |
| AAATCAGCCAGGTTTAGAGA+AGG | - | chr3_1:74481349-74481368 | None:intergenic | 40.0% | |
| !! | CCGTTGGCTTGTAAAAGAAA+TGG | + | chr3_1:74481494-74481513 | Msa0374930:intron | 40.0% |
| TGAATGCAGTTTCCTGTTCT+CGG | + | chr3_1:74482112-74482131 | Msa0374930:intron | 40.0% | |
| TATGAGGTTAACAAGCTCTC+TGG | + | chr3_1:74482146-74482165 | Msa0374930:CDS | 40.0% | |
| TCCAGAACCAAAAAGCAAAG+TGG | + | chr3_1:74482191-74482210 | Msa0374930:CDS | 40.0% | |
| CCAGAACCAAAAAGCAAAGT+GGG | + | chr3_1:74482192-74482211 | Msa0374930:CDS | 40.0% | |
| TTTCTACGGCGAATACCCAA+GGG | - | chr3_1:74478817-74478836 | None:intergenic | 45.0% | |
| TTGGCTAACTTGGACAGCTT+AGG | + | chr3_1:74479388-74479407 | Msa0374930:intron | 45.0% | |
| TGCTATGGACCTGTTTGGAT+TGG | - | chr3_1:74479481-74479500 | None:intergenic | 45.0% | |
| CACATTGCTATGGACCTGTT+TGG | - | chr3_1:74479486-74479505 | None:intergenic | 45.0% | |
| AACCATAGGCCTGTTTGGAT+TGG | + | chr3_1:74479535-74479554 | Msa0374930:intron | 45.0% | |
| ! | TCTTTGCTATGAGAAGGCCA+TGG | + | chr3_1:74479975-74479994 | Msa0374930:intron | 45.0% |
| TGTTCGTGTATGCAGGGATA+CGG | + | chr3_1:74480547-74480566 | Msa0374930:intron | 45.0% | |
| !! | GGAAATTTTCAGGAGACAGC+CGG | + | chr3_1:74480793-74480812 | Msa0374930:CDS | 45.0% |
| ATCACATGAAACACGGGATG+AGG | + | chr3_1:74480971-74480990 | Msa0374930:intron | 45.0% | |
| ATGTAGTGATGCATACTCGG+TGG | - | chr3_1:74481122-74481141 | None:intergenic | 45.0% | |
| ACCGAGTATGCATCACTACA+TGG | + | chr3_1:74481121-74481140 | Msa0374930:CDS | 45.0% | |
| ATTTAGACCAGAGGGGTGAT+TGG | - | chr3_1:74481284-74481303 | None:intergenic | 45.0% | |
| AGGTTTAGAGAAGGCTTGAC+TGG | - | chr3_1:74481340-74481359 | None:intergenic | 45.0% | |
| AGTCAAGCCTTCTCTAAACC+TGG | + | chr3_1:74481339-74481358 | Msa0374930:intron | 45.0% | |
| !! | GTAATGGGTTGTGCATCCTT+TGG | + | chr3_1:74481551-74481570 | Msa0374930:intron | 45.0% |
| ! | GGAGTCACTTGTTGAAACAG+CGG | - | chr3_1:74482174-74482193 | None:intergenic | 45.0% |
| !!! | CCCACTTTGCTTTTTGGTTC+TGG | - | chr3_1:74482195-74482214 | None:intergenic | 45.0% |
| !! | AGCTCTCCCACTTTGCTTTT+TGG | - | chr3_1:74482201-74482220 | None:intergenic | 45.0% |
| CGAATACCCAAGGGCAATCT+CGG | - | chr3_1:74478808-74478827 | None:intergenic | 50.0% | |
| GTTTCTACGGCGAATACCCA+AGG | - | chr3_1:74478818-74478837 | None:intergenic | 50.0% | |
| AGCCAATCCAAACAGGCCTA+TGG | - | chr3_1:74479540-74479559 | None:intergenic | 50.0% | |
| TTGCTATGAGAAGGCCATGG+CGG | + | chr3_1:74479978-74479997 | Msa0374930:intron | 50.0% | |
| !! | AGGTTGGTGTTCGTGTATGC+AGG | + | chr3_1:74480540-74480559 | Msa0374930:intron | 50.0% |
| ! | GGTTGGTGTTCGTGTATGCA+GGG | + | chr3_1:74480541-74480560 | Msa0374930:intron | 50.0% |
| TCAAATGCCAATCACCCCTC+TGG | + | chr3_1:74481274-74481293 | Msa0374930:intron | 50.0% | |
| TGCTATGAGAAGGCCATGGC+GGG | + | chr3_1:74479979-74479998 | Msa0374930:intron | 55.0% | |
| CCGACGATGCAAGTTTCCCA+CGG | - | chr3_1:74480071-74480090 | None:intergenic | 55.0% | |
| CCGTGGGAAACTTGCATCGT+CGG | + | chr3_1:74480068-74480087 | Msa0374930:CDS | 55.0% | |
| GAGACAGCCGGTGCAAAATC+TGG | + | chr3_1:74480805-74480824 | Msa0374930:CDS | 55.0% | |
| AGCCGGTGCAAAATCTGGCT+GGG | + | chr3_1:74480810-74480829 | Msa0374930:CDS | 55.0% | |
| ! | ACCCCAGCCAGATTTTGCAC+CGG | - | chr3_1:74480815-74480834 | None:intergenic | 55.0% |
| GGAGAGAGAGGGTAAGTGCA+GGG | - | chr3_1:74481153-74481172 | None:intergenic | 55.0% | |
| AGAGCAACACAGCCGAGAAC+AGG | - | chr3_1:74482127-74482146 | None:intergenic | 55.0% | |
| ! | CTCGGCTGTGTTGCTCTATG+AGG | + | chr3_1:74482130-74482149 | Msa0374930:CDS | 55.0% |
| GCTATGAGAAGGCCATGGCG+GGG | + | chr3_1:74479980-74479999 | Msa0374930:intron | 60.0% | |
| CAGCCGGTGCAAAATCTGGC+TGG | + | chr3_1:74480809-74480828 | Msa0374930:CDS | 60.0% | |
| GCCGGTGCAAAATCTGGCTG+GGG | + | chr3_1:74480811-74480830 | Msa0374930:CDS | 60.0% | |
| GCAAAATCTGGCTGGGGTGC+TGG | + | chr3_1:74480817-74480836 | Msa0374930:CDS | 60.0% | |
| GGGAGAGAGAGGGTAAGTGC+AGG | - | chr3_1:74481154-74481173 | None:intergenic | 60.0% | |
| ! | AGAAGGCCATGGCGGGGTCT+GGG | + | chr3_1:74479986-74480005 | Msa0374930:intron | 65.0% |
| ! | GAGAAGGCCATGGCGGGGTC+TGG | + | chr3_1:74479985-74480004 | Msa0374930:intron | 70.0% |
| GGAACTCCCAGACCCCGCCA+TGG | - | chr3_1:74479995-74480014 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 74478680 | 74482433 | 74478680 | ID=Msa0374930;Name=Msa0374930 |
| chr3_1 | mRNA | 74478680 | 74482433 | 74478680 | ID=Msa0374930-mRNA-1;Parent=Msa0374930;Name=Msa0374930-mRNA-1;_AED=0.21;_eAED=0.21;_QI=230|1|1|1|0.75|0.6|5|210|125 |
| chr3_1 | exon | 74478680 | 74478906 | 74478680 | ID=Msa0374930-mRNA-1:exon:17227;Parent=Msa0374930-mRNA-1 |
| chr3_1 | exon | 74479991 | 74480149 | 74479991 | ID=Msa0374930-mRNA-1:exon:17228;Parent=Msa0374930-mRNA-1 |
| chr3_1 | exon | 74480787 | 74480838 | 74480787 | ID=Msa0374930-mRNA-1:exon:17229;Parent=Msa0374930-mRNA-1 |
| chr3_1 | exon | 74481076 | 74481142 | 74481076 | ID=Msa0374930-mRNA-1:exon:17230;Parent=Msa0374930-mRNA-1 |
| chr3_1 | exon | 74482121 | 74482433 | 74482121 | ID=Msa0374930-mRNA-1:exon:17231;Parent=Msa0374930-mRNA-1 |
| chr3_1 | five_prime_UTR | 74478680 | 74478906 | 74478680 | ID=Msa0374930-mRNA-1:five_prime_utr;Parent=Msa0374930-mRNA-1 |
| chr3_1 | five_prime_UTR | 74479991 | 74479993 | 74479991 | ID=Msa0374930-mRNA-1:five_prime_utr;Parent=Msa0374930-mRNA-1 |
| chr3_1 | CDS | 74479994 | 74480149 | 74479994 | ID=Msa0374930-mRNA-1:cds;Parent=Msa0374930-mRNA-1 |
| chr3_1 | CDS | 74480787 | 74480838 | 74480787 | ID=Msa0374930-mRNA-1:cds;Parent=Msa0374930-mRNA-1 |
| chr3_1 | CDS | 74481076 | 74481142 | 74481076 | ID=Msa0374930-mRNA-1:cds;Parent=Msa0374930-mRNA-1 |
| chr3_1 | CDS | 74482121 | 74482223 | 74482121 | ID=Msa0374930-mRNA-1:cds;Parent=Msa0374930-mRNA-1 |
| chr3_1 | three_prime_UTR | 74482224 | 74482433 | 74482224 | ID=Msa0374930-mRNA-1:three_prime_utr;Parent=Msa0374930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
