AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1006850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1006850 MtrunA17_Chr7g0217181 85.032 775 36 6 47 771 1 745 0.0 1177
Msa1006850 MtrunA17_Chr5g0417111 41.164 481 202 16 348 770 451 908 5.91e-89 300
Msa1006850 MtrunA17_Chr8g0361681 42.159 389 177 8 425 770 452 835 6.58e-76 262
Msa1006850 MtrunA17_Chr4g0000281 39.526 253 130 11 521 770 192 424 7.91e-38 146
Msa1006850 MtrunA17_Chr8g0361691 43.836 146 79 3 513 657 1 144 5.69e-31 119
Msa1006850 MtrunA17_Chr8g0391071 33.721 258 146 10 521 769 318 559 2.43e-20 95.9
Msa1006850 MtrunA17_Chr6g0484451 36.364 165 94 5 521 681 363 520 5.81e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1006850 AT5G39785.1 49.755 408 153 9 413 770 200 605 3.22e-120 375
Msa1006850 AT5G39785.3 49.755 408 153 9 413 770 200 605 3.22e-120 375
Msa1006850 AT5G39785.5 49.755 408 153 9 413 770 200 605 3.22e-120 375
Msa1006850 AT5G39785.2 49.389 409 154 10 413 770 200 606 9.33e-118 368
Msa1006850 AT5G39785.4 46.882 433 153 10 413 770 200 630 9.29e-115 361
Msa1006850 AT1G69610.3 39.633 381 192 8 421 770 218 591 1.03e-67 235
Msa1006850 AT1G69610.1 39.633 381 192 8 421 770 262 635 2.83e-67 235
Msa1006850 AT1G69610.2 39.633 381 192 8 421 770 263 636 3.13e-67 234
Msa1006850 AT3G20260.1 37.402 254 142 6 521 770 196 436 2.96e-38 148
Msa1006850 AT1G73850.2 31.923 260 158 8 521 770 383 633 3.00e-25 112
Msa1006850 AT1G73850.1 31.923 260 158 8 521 770 383 633 3.00e-25 112
Msa1006850 AT3G01175.1 31.071 280 163 9 514 771 305 576 3.28e-23 105

Find 113 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGAAGATTTGGACTTTA+AGG 0.109617 7_1:-5776247 Msa1006850:CDS
TCAAATTTCAATATCAAAAT+TGG 0.181073 7_1:-5776932 Msa1006850:CDS
TTCGGATAAGCTCAAGAATT+TGG 0.192208 7_1:-5776598 Msa1006850:CDS
AGCATAGAAAGTTTGGATTT+TGG 0.203412 7_1:-5776216 Msa1006850:CDS
CTTCAAGTTCCTGTTATAAA+AGG 0.208394 7_1:-5773948 Msa1006850:intron
GAAAATTCAGCAACACAAAT+TGG 0.215595 7_1:+5777152 None:intergenic
ACATATGCTCCTTTACATTT+AGG 0.225177 7_1:-5772140 Msa1006850:intron
AATGAATGAGCTTGGAAAAT+TGG 0.226780 7_1:-5776154 Msa1006850:CDS
TACAAATTCTATAAGTTCTT+TGG 0.226804 7_1:-5776346 Msa1006850:CDS
TTGGAACAAGAGGTTGTTAA+TGG 0.236856 7_1:-5776579 Msa1006850:CDS
AAGAATCCATTAGAACAATT+TGG 0.248534 7_1:-5773203 Msa1006850:CDS
AATTAATCTAACAATTAATT+AGG 0.249365 7_1:+5772174 None:intergenic
GAAACGCCAAATTGTTCTAA+TGG 0.262300 7_1:+5773197 None:intergenic
AGGTTATGCAAACTCTGTTT+TGG 0.278588 7_1:-5777309 Msa1006850:CDS
ATGAAAAGGCTTTGAAGATA+TGG 0.282269 7_1:-5774124 Msa1006850:CDS
TGAGGAAAGCATAGAAAGTT+TGG 0.290433 7_1:-5776223 Msa1006850:CDS
CATGAAGAGGTGGGAGTGTT+TGG 0.309021 7_1:-5777026 Msa1006850:CDS
TGGGACATTTGTGTCTTTCT+TGG 0.311875 7_1:-5774166 Msa1006850:CDS
GGTTATGAGCCGGACGATTT+CGG 0.316787 7_1:-5776195 Msa1006850:CDS
AGAAGAAAATGTAGAAGATT+TGG 0.317470 7_1:-5776256 Msa1006850:CDS
TTCTGAATCACCAAGGATTA+TGG 0.320123 7_1:-5775956 Msa1006850:CDS
TTCTTGGGAATTCCTTCATT+GGG 0.324254 7_1:-5774150 Msa1006850:CDS
TTTCTTGGGAATTCCTTCAT+TGG 0.333805 7_1:-5774151 Msa1006850:CDS
ACAGCAAAATTTGAAGCCTT+TGG 0.338929 7_1:+5776774 None:intergenic
TCTCTTATGAACTTCTTCAT+TGG 0.346346 7_1:+5774218 None:intergenic
CTCTTATGAACTTCTTCATT+GGG 0.348346 7_1:+5774219 None:intergenic
TTCGAATAAGCTCAAGAATT+CGG 0.352648 7_1:-5776511 Msa1006850:CDS
TCACAAAACTCATACTCAAA+TGG 0.359611 7_1:+5777392 None:intergenic
CGACACACTTTGGGAGCATC+AGG 0.375614 7_1:-5776049 Msa1006850:CDS
AACTTGAAGAAGTTTCTTCA+TGG 0.394542 7_1:+5773962 None:intergenic
CTCAATTTCATGATTATCGT+TGG 0.399638 7_1:+5777130 None:intergenic
GGGACATTTGTGTCTTTCTT+GGG 0.402025 7_1:-5774165 Msa1006850:CDS
ATTGCGCATACAGGAGGTTT+CGG 0.402197 7_1:-5776616 Msa1006850:CDS
ACAATTTGGCGTTTCATAAG+AGG 0.404653 7_1:-5773189 Msa1006850:CDS
CACAAAACTCATACTCAAAT+GGG 0.406500 7_1:+5777393 None:intergenic
ATTATATAGTGACTTGGAAA+TGG 0.407936 7_1:-5774195 Msa1006850:CDS
TGGAACAAGAGGTTGTTAAT+GGG 0.410661 7_1:-5776578 Msa1006850:CDS
ATATGGGAATCTGACCAATA+TGG 0.412262 7_1:-5774107 Msa1006850:CDS
TGAACCTTCTCAATCCATAT+TGG 0.419092 7_1:+5774093 None:intergenic
TGGTTTACCTACTATCTTTG+AGG 0.423238 7_1:-5775980 Msa1006850:CDS
TCGGAACAAGAGGTTGTTGA+TGG 0.427227 7_1:-5776492 Msa1006850:CDS
GAAAGAAAATTACGCGCATA+TGG 0.429075 7_1:+5776399 None:intergenic
CCTTCATTGGGAATATGAAA+AGG 0.433923 7_1:-5774138 Msa1006850:CDS
CTGAAGAAAGTTAAAGCTAC+TGG 0.435961 7_1:-5776000 Msa1006850:CDS
TGAAAAGGCTTTGAAGATAT+GGG 0.437992 7_1:-5774123 Msa1006850:CDS
AAAATTCAGCAACACAAATT+GGG 0.440654 7_1:+5777153 None:intergenic
TTCAAATCTTCCATAATCCT+TGG 0.444245 7_1:+5775946 None:intergenic
GAACCGGTTCGACACACTTT+GGG 0.448738 7_1:-5776058 Msa1006850:CDS
TAAATCTTTGTAGAAGAACT+TGG 0.453472 7_1:+5774042 None:intergenic
AACTACAGATTTCGATACAT+TGG 0.456260 7_1:-5776289 Msa1006850:CDS
ACTACAGATTTCGATACATT+GGG 0.462337 7_1:-5776288 Msa1006850:CDS
TCAACCCTTGGACCTTGAAA+AGG 0.462599 7_1:+5774008 None:intergenic
AACAAGTATGAGTTTATCTC+AGG 0.467675 7_1:-5776825 Msa1006850:CDS
GCTCCCAAAGTGTGTCGAAC+CGG 0.473141 7_1:+5776055 None:intergenic
CGAACCGGTTCGACACACTT+TGG 0.473629 7_1:-5776059 Msa1006850:CDS
GCCAACGGAACATTATCATT+CGG 0.479479 7_1:+5776732 None:intergenic
TCAGAATCCTCAAAGATAGT+AGG 0.480405 7_1:+5775973 None:intergenic
CCTATGTCTAACTAGTTGCT+TGG 0.487397 7_1:-5772086 Msa1006850:intron
AGATTTGGACTTTAAGGATG+AGG 0.489615 7_1:-5776241 Msa1006850:CDS
TCTTCTTCTCCGAAATCGTC+CGG 0.490632 7_1:+5776186 None:intergenic
GAAGATATAATGAATGAGCT+TGG 0.496345 7_1:-5776162 Msa1006850:CDS
TTGATCTTGATGAGTCGAAC+CGG 0.499193 7_1:-5776074 Msa1006850:CDS
TACTAGCATGTCACTTGTGA+TGG 0.502737 7_1:+5773236 None:intergenic
AGAAGGTTCAATGAAGTAGC+TGG 0.505395 7_1:-5774080 Msa1006850:CDS
ACTAGAAGTTGTGAATCAGC+AGG 0.508732 7_1:+5773102 None:intergenic
TAAATTCTTGGATGAACCAA+AGG 0.510104 7_1:-5776790 Msa1006850:CDS
TGACTTGGAAATGGTTTATG+TGG 0.517351 7_1:-5774186 Msa1006850:CDS
GAAGGAAAAGAGATTGAGAG+AGG 0.519928 7_1:-5772421 Msa1006850:CDS
CTCAGAAAAGTTACATGGAG+TGG 0.520389 7_1:-5776538 Msa1006850:CDS
TATAGGTCTTATGAAGTCAA+AGG 0.524367 7_1:-5774351 Msa1006850:intron
TTATGGAAGATTTGAAGCCA+TGG 0.526012 7_1:-5775939 Msa1006850:CDS
TTTGATAGAACAGCTGAAGA+TGG 0.528095 7_1:-5776025 Msa1006850:CDS
GATTCTAACGGATCTTCAAA+AGG 0.532367 7_1:-5773076 Msa1006850:intron
GCTCAAGAATTTGGAACAAG+AGG 0.535372 7_1:-5776589 Msa1006850:CDS
TGATACTGTTTCACATGAAG+AGG 0.536152 7_1:-5777039 Msa1006850:CDS
GAGAATAGTGAAGAGGTTGT+TGG 0.542023 7_1:-5776669 Msa1006850:CDS
TCCGAATGATAATGTTCCGT+TGG 0.543662 7_1:-5776733 Msa1006850:CDS
GAATGAGCTTGGAAAATTGG+AGG 0.545527 7_1:-5776151 Msa1006850:CDS
CGGAACAAGAGGTTGTTGAT+GGG 0.550736 7_1:-5776491 Msa1006850:CDS
CAATGACCACCTAAATGTAA+AGG 0.551708 7_1:+5772131 None:intergenic
ATTGTATACTTCTGAAGCAA+TGG 0.552364 7_1:-5777177 Msa1006850:CDS
GTTATCTGAGAATAGTGAAG+AGG 0.554208 7_1:-5776676 Msa1006850:CDS
TAACAAACCAGCTGAATCAT+CGG 0.557117 7_1:+5776695 None:intergenic
TACTGTTTCACATGAAGAGG+TGG 0.559153 7_1:-5777036 Msa1006850:CDS
CAAGGGTTGAAAATTATGCT+AGG 0.564322 7_1:-5773995 Msa1006850:CDS
ATTGGAGGAAGAAATCAGAC+AGG 0.570120 7_1:-5776136 Msa1006850:CDS
TGCTGATTCACAACTTCTAG+TGG 0.570157 7_1:-5773100 Msa1006850:CDS
GCTCAAGAATTCGGAACAAG+AGG 0.573553 7_1:-5776502 Msa1006850:CDS
AATGTCTCAGAAAAGTTACA+TGG 0.576721 7_1:-5776543 Msa1006850:CDS
TCTATAAGTTCTTTGGACGA+TGG 0.578372 7_1:-5776339 Msa1006850:CDS
CTCAGAAAAGTTACACGAAG+AGG 0.579058 7_1:-5776451 Msa1006850:CDS
ACATGGAAATTGTACAACTT+AGG 0.582735 7_1:+5772063 None:intergenic
GTAGAGTGTTGAATATGTCA+AGG 0.586380 7_1:-5772293 Msa1006850:CDS
ATGGTTCTACATGTATCCTA+CGG 0.587088 7_1:+5772211 None:intergenic
AAGAGAATTATATAGTGACT+TGG 0.594503 7_1:-5774201 Msa1006850:CDS
AATATTTGCATGGCACCACA+TGG 0.603534 7_1:+5772046 None:intergenic
CATGTGGCCGATGATTCAGC+TGG 0.611802 7_1:-5776702 Msa1006850:CDS
CTGACCAATATGGATTGAGA+AGG 0.613103 7_1:-5774097 Msa1006850:CDS
AGAAAAGTTACATGGAGTGG+AGG 0.616618 7_1:-5776535 Msa1006850:CDS
TTATTTGTTGCAGAAGACAA+AGG 0.623970 7_1:-5773303 Msa1006850:intron
AGAAAAGTTACACGAAGAGG+AGG 0.626156 7_1:-5776448 Msa1006850:CDS
ATGTCTTAAAGAACAACATG+TGG 0.633494 7_1:-5773136 Msa1006850:CDS
TGTTGCAGAAGACAAAGGCA+AGG 0.634467 7_1:-5773298 Msa1006850:intron
GACTTGGAAATGGTTTATGT+GGG 0.635292 7_1:-5774185 Msa1006850:CDS
ACTTCTAGTGGAGATTCTAA+CGG 0.636948 7_1:-5773088 Msa1006850:CDS
TTGAGGATTCTGAATCACCA+AGG 0.644133 7_1:-5775963 Msa1006850:CDS
ACTGTTTCACATGAAGAGGT+GGG 0.656938 7_1:-5777035 Msa1006850:CDS
CTAGAAGTTGTGAATCAGCA+GGG 0.660177 7_1:+5773103 None:intergenic
TAACGACTGATCAACTAGCA+TGG 0.666424 7_1:-5772269 Msa1006850:CDS
AATAGTGAAGAGGTTGTTGG+TGG 0.673028 7_1:-5776666 Msa1006850:CDS
AAGAAACTATTAATGCCGCG+TGG 0.705630 7_1:+5774269 None:intergenic
TAAGTTGTACAATTTCCATG+TGG 0.715492 7_1:-5772061 Msa1006850:three_prime_UTR
ATCACATGCATTCTTCCACG+CGG 0.774300 7_1:-5774284 Msa1006850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTTATATGAAATAATTA+GGG + chr7_1:5774665-5774684 None:intergenic 10.0%
!! TATTGTTATATGAAATAATT+AGG + chr7_1:5774666-5774685 None:intergenic 10.0%
!! TTGAAAAAATAAAATTTCTT+TGG + chr7_1:5774767-5774786 None:intergenic 10.0%
!! AATTAATCTAACAATTAATT+AGG + chr7_1:5777278-5777297 None:intergenic 10.0%
!! GTAATTGAATTTACATTATA+TGG - chr7_1:5772191-5772210 Msa1006850:CDS 15.0%
!! TCAAATTTCAATATCAAAAT+TGG - chr7_1:5772517-5772536 Msa1006850:intron 15.0%
!! AAGAAAGGTAAATAAATTTA+AGG + chr7_1:5773685-5773704 None:intergenic 15.0%
!!! TCAATGTATTTAAAATGTTA+GGG + chr7_1:5773828-5773847 None:intergenic 15.0%
!!! TTCAATGTATTTAAAATGTT+AGG + chr7_1:5773829-5773848 None:intergenic 15.0%
!!! TTTTTACTCTTTTCTATTAT+TGG - chr7_1:5774098-5774117 Msa1006850:CDS 15.0%
!! TCAATTAAATGAATATTTGA+AGG + chr7_1:5774149-5774168 None:intergenic 15.0%
!!! CAAGTATATATTTTGTTAAT+TGG + chr7_1:5774814-5774833 None:intergenic 15.0%
!! AAAATTAAGCATAATGTAAA+AGG + chr7_1:5775014-5775033 None:intergenic 15.0%
!!! AAATATACCATTACTTTTAA+AGG + chr7_1:5775573-5775592 None:intergenic 15.0%
!! ATCGAAATATTAATAATTGA+AGG - chr7_1:5775890-5775909 Msa1006850:intron 15.0%
!!! AAATTGATTCTTGAAATTAT+AGG - chr7_1:5775944-5775963 Msa1006850:CDS 15.0%
!! ATAGATAAATGATCAAAATA+AGG - chr7_1:5776534-5776553 Msa1006850:CDS 15.0%
!! ATTATCTAAAAATATTTGCA+TGG + chr7_1:5777416-5777435 None:intergenic 15.0%
!!! AGAATTTTATGAATGTTTTG+AGG - chr7_1:5772380-5772399 Msa1006850:CDS 20.0%
!!! AAAGAGTTTTAGTAAATTCT+TGG - chr7_1:5772647-5772666 Msa1006850:intron 20.0%
!! TACAAATTCTATAAGTTCTT+TGG - chr7_1:5773103-5773122 Msa1006850:CDS 20.0%
!!! AATTTTTCATCAATTTTCCA+TGG + chr7_1:5773530-5773549 None:intergenic 20.0%
!! TTTAATGGTTTAGATAAAGT+AGG + chr7_1:5773967-5773986 None:intergenic 20.0%
!!! TAAACCATTAAAAAGTATAG+AGG - chr7_1:5773975-5773994 Msa1006850:CDS 20.0%
!!! TCTATTATTGGTTTTGTTTA+TGG - chr7_1:5774110-5774129 Msa1006850:CDS 20.0%
!!! GTTTGTTAACTATAATAAGT+AGG - chr7_1:5774346-5774365 Msa1006850:CDS 20.0%
!!! TTGGAGTTTTAAAATATCAA+CGG + chr7_1:5774433-5774452 None:intergenic 20.0%
!! GTATAGTAGTAATTAGATAT+TGG + chr7_1:5774452-5774471 None:intergenic 20.0%
!! TGTAATAATTGACAAGTATT+AGG - chr7_1:5774716-5774735 Msa1006850:intron 20.0%
!! GTAATAATTGACAAGTATTA+GGG - chr7_1:5774717-5774736 Msa1006850:intron 20.0%
!!! ATTTTGTTAATTGGTGTTTA+AGG + chr7_1:5774805-5774824 None:intergenic 20.0%
!!! AATTTTTAAGACTCAAATCA+TGG - chr7_1:5775028-5775047 Msa1006850:intron 20.0%
!!! TGTACGTACTATATTTTTAT+AGG - chr7_1:5775081-5775100 Msa1006850:intron 20.0%
!!! GAATTGAAAATGATTTTAGT+GGG + chr7_1:5775125-5775144 None:intergenic 20.0%
!!! TGAATTGAAAATGATTTTAG+TGG + chr7_1:5775126-5775145 None:intergenic 20.0%
!!! CTTTAAAAGTAATGTGAATA+TGG - chr7_1:5775530-5775549 Msa1006850:intron 20.0%
!! TTCTATTAATCCTATTAAGT+CGG + chr7_1:5775837-5775856 None:intergenic 20.0%
!!! ATTCAAACTTTTTGTTAAGT+TGG - chr7_1:5776036-5776055 Msa1006850:CDS 20.0%
!! AATGAAAATTCATCGTATTT+CGG - chr7_1:5776564-5776583 Msa1006850:CDS 20.0%
!!! AATAATCCAAGTTTGATTTT+TGG - chr7_1:5776657-5776676 Msa1006850:CDS 20.0%
!!! AAGATTGAATTTTTCGATTG+TGG - chr7_1:5772097-5772116 Msa1006850:intron 25.0%
!!! TTTTCAACAAAGTGTTCATA+AGG - chr7_1:5772164-5772183 Msa1006850:three_prime_UTR 25.0%
! AAAATTCAGCAACACAAATT+GGG + chr7_1:5772299-5772318 None:intergenic 25.0%
!! TTTTTCTGAGTCAAAAATTG+AGG - chr7_1:5772347-5772366 Msa1006850:CDS 25.0%
!! ATTTTTCCTCTTCTTTTTCT+AGG + chr7_1:5772485-5772504 None:intergenic 25.0%
!!! AATTTTAGTGAGGAATTGAA+GGG - chr7_1:5772546-5772565 Msa1006850:intron 25.0%
!!! AAAGTAGTGATTTTGACAAA+AGG - chr7_1:5772580-5772599 Msa1006850:intron 25.0%
!!! AAGTAGTGATTTTGACAAAA+GGG - chr7_1:5772581-5772600 Msa1006850:intron 25.0%
! AGAAGAAAATGTAGAAGATT+TGG - chr7_1:5773193-5773212 Msa1006850:CDS 25.0%
! ACAAAAATCGATGAGTTTAA+CGG - chr7_1:5773349-5773368 Msa1006850:intron 25.0%
! ATTGATGAAAAATTTCAGCA+AGG - chr7_1:5773536-5773555 Msa1006850:intron 25.0%
! AATGAAAATTGTCATGAACA+AGG + chr7_1:5773923-5773942 None:intergenic 25.0%
!!! AAAGTAGGTTTTGATTATCA+AGG + chr7_1:5773952-5773971 None:intergenic 25.0%
! TACTTGTGTCACATATAATA+GGG + chr7_1:5774051-5774070 None:intergenic 25.0%
! TTACTTGTGTCACATATAAT+AGG + chr7_1:5774052-5774071 None:intergenic 25.0%
!!! TTTGTTATTGCAACAAAAAG+TGG - chr7_1:5774181-5774200 Msa1006850:CDS 25.0%
! AGACTTATATGGCTATATTT+AGG + chr7_1:5774320-5774339 None:intergenic 25.0%
! CAAACAAGAAAAGACTTATA+TGG + chr7_1:5774331-5774350 None:intergenic 25.0%
! TTAAGTGTAACTATATGTGT+CGG - chr7_1:5774559-5774578 Msa1006850:intron 25.0%
! AAAAGGGTCATAGAAAAATT+GGG + chr7_1:5774890-5774909 None:intergenic 25.0%
! TAAAAGGGTCATAGAAAAAT+TGG + chr7_1:5774891-5774910 None:intergenic 25.0%
! TGAACTTTGAATAATCTATG+TGG - chr7_1:5774988-5775007 Msa1006850:intron 25.0%
! AAGAGAATTATATAGTGACT+TGG - chr7_1:5775248-5775267 Msa1006850:intron 25.0%
!! ATTATATAGTGACTTGGAAA+TGG - chr7_1:5775254-5775273 Msa1006850:intron 25.0%
! TAAATCTTTGTAGAAGAACT+TGG + chr7_1:5775410-5775429 None:intergenic 25.0%
! TAATTAGTGTAATTATGCGT+CGG + chr7_1:5775700-5775719 None:intergenic 25.0%
!! TGATTTTCGCAAATTATTAG+CGG - chr7_1:5775722-5775741 Msa1006850:intron 25.0%
!!! GTGAATCACTATTTGATTTT+TGG + chr7_1:5776015-5776034 None:intergenic 25.0%
! AAGAATCCATTAGAACAATT+TGG - chr7_1:5776246-5776265 Msa1006850:CDS 25.0%
! TATCTATGCAATTGAAACTT+TGG + chr7_1:5776521-5776540 None:intergenic 25.0%
!! GTGCTTAAAAAGCATATTTA+GGG - chr7_1:5776586-5776605 Msa1006850:CDS 25.0%
! TTAGTAAGACATTACACAAT+AGG + chr7_1:5776803-5776822 None:intergenic 25.0%
! ACACAACTTCTTATAAGAAA+AGG + chr7_1:5776967-5776986 None:intergenic 25.0%
!!! TTGTTTTTTGAATTTGCAGA+AGG - chr7_1:5777010-5777029 Msa1006850:CDS 25.0%
! TTAGGAAAAAGTAAGAATGA+TGG + chr7_1:5777260-5777279 None:intergenic 25.0%
!! GTTGAAATAGTCAAGAATTT+TGG - chr7_1:5777340-5777359 Msa1006850:CDS 25.0%
CACAAAACTCATACTCAAAT+GGG + chr7_1:5772059-5772078 None:intergenic 30.0%
TCACAAAACTCATACTCAAA+TGG + chr7_1:5772060-5772079 None:intergenic 30.0%
!! TTTGAGTATGAGTTTTGTGA+AGG - chr7_1:5772060-5772079 Msa1006850:three_prime_UTR 30.0%
!! TTGAGTATGAGTTTTGTGAA+GGG - chr7_1:5772061-5772080 Msa1006850:three_prime_UTR 30.0%
!! AATTTTTCGATTGTGGCTTT+TGG - chr7_1:5772104-5772123 Msa1006850:intron 30.0%
!! ATTTTTCGATTGTGGCTTTT+GGG - chr7_1:5772105-5772124 Msa1006850:intron 30.0%
!!! CTTTTGGGTTTTTCTCATTA+AGG - chr7_1:5772120-5772139 Msa1006850:intron 30.0%
!! ATTGTATACTTCTGAAGCAA+TGG - chr7_1:5772272-5772291 Msa1006850:CDS 30.0%
GAAAATTCAGCAACACAAAT+TGG + chr7_1:5772300-5772319 None:intergenic 30.0%
CTCAATTTCATGATTATCGT+TGG + chr7_1:5772322-5772341 None:intergenic 30.0%
! TTTTGACCTAGAAAAAGAAG+AGG - chr7_1:5772476-5772495 Msa1006850:intron 30.0%
AGAAGAGGAAAAATCAAAGT+TGG - chr7_1:5772491-5772510 Msa1006850:intron 30.0%
!! TTGGAATTGCAATTTTAGTG+AGG - chr7_1:5772536-5772555 Msa1006850:intron 30.0%
!! CAATTTTAGTGAGGAATTGA+AGG - chr7_1:5772545-5772564 Msa1006850:intron 30.0%
!! AGTAGTGATTTTGACAAAAG+GGG - chr7_1:5772582-5772601 Msa1006850:intron 30.0%
AACAAGTATGAGTTTATCTC+AGG - chr7_1:5772624-5772643 Msa1006850:intron 30.0%
TAAATTCTTGGATGAACCAA+AGG - chr7_1:5772659-5772678 Msa1006850:intron 30.0%
AATGTCTCAGAAAAGTTACA+TGG - chr7_1:5772906-5772925 Msa1006850:intron 30.0%
TTCGAATAAGCTCAAGAATT+CGG - chr7_1:5772938-5772957 Msa1006850:intron 30.0%
AACTACAGATTTCGATACAT+TGG - chr7_1:5773160-5773179 Msa1006850:CDS 30.0%
ACTACAGATTTCGATACATT+GGG - chr7_1:5773161-5773180 Msa1006850:CDS 30.0%
TGTAGAAGATTTGGACTTTA+AGG - chr7_1:5773202-5773221 Msa1006850:CDS 30.0%
! AGCATAGAAAGTTTGGATTT+TGG - chr7_1:5773233-5773252 Msa1006850:CDS 30.0%
GAAGATATAATGAATGAGCT+TGG - chr7_1:5773287-5773306 Msa1006850:CDS 30.0%
AATGAATGAGCTTGGAAAAT+TGG - chr7_1:5773295-5773314 Msa1006850:intron 30.0%
TTCAAATCTTCCATAATCCT+TGG + chr7_1:5773506-5773525 None:intergenic 30.0%
! CTGTAACTTCTGTAGAATTT+TGG + chr7_1:5773584-5773603 None:intergenic 30.0%
TACCAAAAGATGTATGCTTT+AGG - chr7_1:5773635-5773654 Msa1006850:intron 30.0%
! TACCTAAAGCATACATCTTT+TGG + chr7_1:5773640-5773659 None:intergenic 30.0%
! ATATGCAACTTGCTTAAGAA+AGG + chr7_1:5773700-5773719 None:intergenic 30.0%
!! CTCACCTCTATACTTTTTAA+TGG + chr7_1:5773982-5774001 None:intergenic 30.0%
! CATTAAAAAGTATAGAGGTG+AGG - chr7_1:5773980-5773999 Msa1006850:CDS 30.0%
TCAACTAACCAGATTTAGTA+GGG + chr7_1:5774007-5774026 None:intergenic 30.0%
TTATTGCAACAAAAAGTGGT+AGG - chr7_1:5774185-5774204 Msa1006850:CDS 30.0%
! AACTTTTTATGTCACATGCT+TGG - chr7_1:5774237-5774256 Msa1006850:CDS 30.0%
! AAGTAGGAACACTATTCTTT+TGG - chr7_1:5774362-5774381 Msa1006850:intron 30.0%
TACTACTATACTATGAAGCA+CGG - chr7_1:5774461-5774480 Msa1006850:intron 30.0%
TATGAAACATGGATACTTCT+CGG + chr7_1:5774626-5774645 None:intergenic 30.0%
CTGAGTTTCTCTCAAATTAA+GGG + chr7_1:5774691-5774710 None:intergenic 30.0%
TCTGAGTTTCTCTCAAATTA+AGG + chr7_1:5774692-5774711 None:intergenic 30.0%
!! AAAGCTATTTTCCTTTCTCT+TGG - chr7_1:5774955-5774974 Msa1006850:intron 30.0%
AACATAACTTTCCAAGAGAA+AGG + chr7_1:5774969-5774988 None:intergenic 30.0%
! TATAGGTCTTATGAAGTCAA+AGG - chr7_1:5775098-5775117 Msa1006850:intron 30.0%
CTCTTATGAACTTCTTCATT+GGG + chr7_1:5775233-5775252 None:intergenic 30.0%
TCTCTTATGAACTTCTTCAT+TGG + chr7_1:5775234-5775253 None:intergenic 30.0%
!! ATGAAAAGGCTTTGAAGATA+TGG - chr7_1:5775325-5775344 Msa1006850:intron 30.0%
!! TGAAAAGGCTTTGAAGATAT+GGG - chr7_1:5775326-5775345 Msa1006850:intron 30.0%
! ATAGAGAATGAACCTTTTCA+AGG - chr7_1:5775429-5775448 Msa1006850:intron 30.0%
AACTTGAAGAAGTTTCTTCA+TGG + chr7_1:5775490-5775509 None:intergenic 30.0%
! CTTCAAGTTCCTGTTATAAA+AGG - chr7_1:5775501-5775520 Msa1006850:intron 30.0%
! AAGTTCTCACCTTTTATAAC+AGG + chr7_1:5775513-5775532 None:intergenic 30.0%
!! ACTTTTAAAGGTCTAACCAA+TGG + chr7_1:5775561-5775580 None:intergenic 30.0%
! GGTTAGACCTTTAAAAGTAA+TGG - chr7_1:5775563-5775582 Msa1006850:intron 30.0%
! GGTCAATTTAGTCTCTAAAA+CGG + chr7_1:5775816-5775835 None:intergenic 30.0%
! ACTAAATTGACCGACTTAAT+AGG - chr7_1:5775824-5775843 Msa1006850:intron 30.0%
CTCACATATAGAACTGTATA+TGG + chr7_1:5776090-5776109 None:intergenic 30.0%
TGAGACAAAATAGTTCATCA+TGG - chr7_1:5776106-5776125 Msa1006850:CDS 30.0%
! TTATTTGTTGCAGAAGACAA+AGG - chr7_1:5776146-5776165 Msa1006850:CDS 30.0%
ATGTCTTAAAGAACAACATG+TGG - chr7_1:5776313-5776332 Msa1006850:CDS 30.0%
! GGTGCTTAAAAAGCATATTT+AGG - chr7_1:5776585-5776604 Msa1006850:CDS 30.0%
! CAACTCTTCCAACAATATTT+TGG + chr7_1:5776614-5776633 None:intergenic 30.0%
CAAAATATTGTTGGAAGAGT+TGG - chr7_1:5776612-5776631 Msa1006850:CDS 30.0%
AGATCCTAATTGTACTTGTT+AGG - chr7_1:5776754-5776773 Msa1006850:CDS 30.0%
! GATCCTAATTGTACTTGTTA+GGG - chr7_1:5776755-5776774 Msa1006850:CDS 30.0%
TTTCCCTAACAAGTACAATT+AGG + chr7_1:5776761-5776780 None:intergenic 30.0%
TGAGAGAAAAAGTAAAGAAC+TGG + chr7_1:5777116-5777135 None:intergenic 30.0%
!!! TCTTTACTTTTTCTCTCAAG+TGG - chr7_1:5777118-5777137 Msa1006850:CDS 30.0%
! AGATCAATTTTGTAAACCGT+AGG - chr7_1:5777222-5777241 Msa1006850:intron 30.0%
ACATATGCTCCTTTACATTT+AGG - chr7_1:5777309-5777328 Msa1006850:CDS 30.0%
ACATGGAAATTGTACAACTT+AGG + chr7_1:5777389-5777408 None:intergenic 30.0%
TAAGTTGTACAATTTCCATG+TGG - chr7_1:5777388-5777407 Msa1006850:exon 30.0%
! AGGTTATGCAAACTCTGTTT+TGG - chr7_1:5772140-5772159 Msa1006850:intron 35.0%
! GGTTATGCAAACTCTGTTTT+GGG - chr7_1:5772141-5772160 Msa1006850:three_prime_UTR 35.0%
TGATACTGTTTCACATGAAG+AGG - chr7_1:5772410-5772429 Msa1006850:CDS 35.0%
! ACAGCAAAATTTGAAGCCTT+TGG + chr7_1:5772678-5772697 None:intergenic 35.0%
TAACAAACCAGCTGAATCAT+CGG + chr7_1:5772757-5772776 None:intergenic 35.0%
GTTATCTGAGAATAGTGAAG+AGG - chr7_1:5772773-5772792 Msa1006850:intron 35.0%
TTCGGATAAGCTCAAGAATT+TGG - chr7_1:5772851-5772870 Msa1006850:intron 35.0%
TTGGAACAAGAGGTTGTTAA+TGG - chr7_1:5772870-5772889 Msa1006850:intron 35.0%
TGGAACAAGAGGTTGTTAAT+GGG - chr7_1:5772871-5772890 Msa1006850:intron 35.0%
GAAAGAAAATTACGCGCATA+TGG + chr7_1:5773053-5773072 None:intergenic 35.0%
TCTATAAGTTCTTTGGACGA+TGG - chr7_1:5773110-5773129 Msa1006850:CDS 35.0%
!!! TTTGGACGATGGTTTTTTGT+CGG - chr7_1:5773121-5773140 Msa1006850:CDS 35.0%
! TTTTTGTCGGACACAGATTT+TGG - chr7_1:5773134-5773153 Msa1006850:CDS 35.0%
! AGATTTGGACTTTAAGGATG+AGG - chr7_1:5773208-5773227 Msa1006850:CDS 35.0%
! TGAGGAAAGCATAGAAAGTT+TGG - chr7_1:5773226-5773245 Msa1006850:CDS 35.0%
!!! TTTGGATTTTGGTTATGAGC+CGG - chr7_1:5773244-5773263 Msa1006850:CDS 35.0%
TTTGATAGAACAGCTGAAGA+TGG - chr7_1:5773424-5773443 Msa1006850:intron 35.0%
CTGAAGAAAGTTAAAGCTAC+TGG - chr7_1:5773449-5773468 Msa1006850:intron 35.0%
TGGTTTACCTACTATCTTTG+AGG - chr7_1:5773469-5773488 Msa1006850:intron 35.0%
TCAGAATCCTCAAAGATAGT+AGG + chr7_1:5773479-5773498 None:intergenic 35.0%
TTCTGAATCACCAAGGATTA+TGG - chr7_1:5773493-5773512 Msa1006850:intron 35.0%
! TTATGGAAGATTTGAAGCCA+TGG - chr7_1:5773510-5773529 Msa1006850:intron 35.0%
AATCGAATAGACAGTTCAAC+CGG - chr7_1:5773741-5773760 Msa1006850:intron 35.0%
AATCGAACCATAGACAATGT+CGG + chr7_1:5773779-5773798 None:intergenic 35.0%
CTCAACTAACCAGATTTAGT+AGG + chr7_1:5774008-5774027 None:intergenic 35.0%
ATGCAAAGCTACCAAGTAAT+GGG + chr7_1:5774293-5774312 None:intergenic 35.0%
AATGCAAAGCTACCAAGTAA+TGG + chr7_1:5774294-5774313 None:intergenic 35.0%
TATACTATGAAGCACGGATA+CGG - chr7_1:5774467-5774486 Msa1006850:intron 35.0%
!! GAGAAGTATCCATGTTTCAT+AGG - chr7_1:5774625-5774644 Msa1006850:intron 35.0%
CAAACTTGTCTTGTATGGTA+AGG + chr7_1:5774934-5774953 None:intergenic 35.0%
CTTACCATACAAGACAAGTT+TGG - chr7_1:5774932-5774951 Msa1006850:intron 35.0%
CTTTCCAAACTTGTCTTGTA+TGG + chr7_1:5774939-5774958 None:intergenic 35.0%
! TGACTTGGAAATGGTTTATG+TGG - chr7_1:5775263-5775282 Msa1006850:intron 35.0%
GACTTGGAAATGGTTTATGT+GGG - chr7_1:5775264-5775283 Msa1006850:intron 35.0%
TTTCTTGGGAATTCCTTCAT+TGG - chr7_1:5775298-5775317 Msa1006850:intron 35.0%
TTCTTGGGAATTCCTTCATT+GGG - chr7_1:5775299-5775318 Msa1006850:intron 35.0%
! CCTTTTCATATTCCCAATGA+AGG + chr7_1:5775314-5775333 None:intergenic 35.0%
CCTTCATTGGGAATATGAAA+AGG - chr7_1:5775311-5775330 Msa1006850:intron 35.0%
ATATGGGAATCTGACCAATA+TGG - chr7_1:5775342-5775361 Msa1006850:intron 35.0%
TGAACCTTCTCAATCCATAT+TGG + chr7_1:5775359-5775378 None:intergenic 35.0%
! CTAGCATAATTTTCAACCCT+TGG + chr7_1:5775456-5775475 None:intergenic 35.0%
CAAGGGTTGAAAATTATGCT+AGG - chr7_1:5775454-5775473 Msa1006850:intron 35.0%
! TGTGAATATGGTTAGTCCAT+TGG - chr7_1:5775542-5775561 Msa1006850:intron 35.0%
TCCACTTTCTTTGAACTATG+TGG - chr7_1:5776060-5776079 Msa1006850:CDS 35.0%
CCACTTTCTTTGAACTATGT+GGG - chr7_1:5776061-5776080 Msa1006850:CDS 35.0%
CACTTTCTTTGAACTATGTG+GGG - chr7_1:5776062-5776081 Msa1006850:CDS 35.0%
ACTTTCTTTGAACTATGTGG+GGG - chr7_1:5776063-5776082 Msa1006850:CDS 35.0%
GAAACGCCAAATTGTTCTAA+TGG + chr7_1:5776255-5776274 None:intergenic 35.0%
ACAATTTGGCGTTTCATAAG+AGG - chr7_1:5776260-5776279 Msa1006850:CDS 35.0%
ACTTCTAGTGGAGATTCTAA+CGG - chr7_1:5776361-5776380 Msa1006850:CDS 35.0%
! GATTCTAACGGATCTTCAAA+AGG - chr7_1:5776373-5776392 Msa1006850:CDS 35.0%
!!! TTTTTGGAGTCGCCTATTTT+TGG - chr7_1:5776673-5776692 Msa1006850:CDS 35.0%
ATGGGAGCAATTCCAAAAAT+AGG + chr7_1:5776688-5776707 None:intergenic 35.0%
ATTAGGATCTTTGACCTCTA+CGG + chr7_1:5776744-5776763 None:intergenic 35.0%
! AGAGATTGAGAGAGGTTTTA+AGG - chr7_1:5777036-5777055 Msa1006850:CDS 35.0%
!! GTAGAGTGTTGAATATGTCA+AGG - chr7_1:5777156-5777175 Msa1006850:CDS 35.0%
! ATGGTTCTACATGTATCCTA+CGG + chr7_1:5777241-5777260 None:intergenic 35.0%
TATGCTCCTTTACATTTAGG+TGG - chr7_1:5777312-5777331 Msa1006850:CDS 35.0%
CAATGACCACCTAAATGTAA+AGG + chr7_1:5777321-5777340 None:intergenic 35.0%
TGAGTCAAAAATTGAGGCTG+AGG - chr7_1:5772353-5772372 Msa1006850:CDS 40.0%
TACTGTTTCACATGAAGAGG+TGG - chr7_1:5772413-5772432 Msa1006850:CDS 40.0%
ACTGTTTCACATGAAGAGGT+GGG - chr7_1:5772414-5772433 Msa1006850:CDS 40.0%
!! AGTGATTTTGACAAAAGGGG+TGG - chr7_1:5772585-5772604 Msa1006850:intron 40.0%
! TCCGAATGATAATGTTCCGT+TGG - chr7_1:5772716-5772735 Msa1006850:intron 40.0%
GCCAACGGAACATTATCATT+CGG + chr7_1:5772720-5772739 None:intergenic 40.0%
GAGAATAGTGAAGAGGTTGT+TGG - chr7_1:5772780-5772799 Msa1006850:intron 40.0%
AATAGTGAAGAGGTTGTTGG+TGG - chr7_1:5772783-5772802 Msa1006850:intron 40.0%
CTCAGAAAAATTGCGCATAC+AGG - chr7_1:5772824-5772843 Msa1006850:intron 40.0%
AGAAAAATTGCGCATACAGG+AGG - chr7_1:5772827-5772846 Msa1006850:intron 40.0%
! GCTCAAGAATTTGGAACAAG+AGG - chr7_1:5772860-5772879 Msa1006850:intron 40.0%
CTCAGAAAAGTTACATGGAG+TGG - chr7_1:5772911-5772930 Msa1006850:intron 40.0%
AGAAAAGTTACATGGAGTGG+AGG - chr7_1:5772914-5772933 Msa1006850:intron 40.0%
CTCAGAAAAGTTACACGAAG+AGG - chr7_1:5772998-5773017 Msa1006850:intron 40.0%
AGAAAAGTTACACGAAGAGG+AGG - chr7_1:5773001-5773020 Msa1006850:intron 40.0%
GAATGAGCTTGGAAAATTGG+AGG - chr7_1:5773298-5773317 Msa1006850:intron 40.0%
ATTGGAGGAAGAAATCAGAC+AGG - chr7_1:5773313-5773332 Msa1006850:intron 40.0%
TTGATCTTGATGAGTCGAAC+CGG - chr7_1:5773375-5773394 Msa1006850:intron 40.0%
TTGAGGATTCTGAATCACCA+AGG - chr7_1:5773486-5773505 Msa1006850:intron 40.0%
!! ATGTCGGTTCATGATTCAAC+CGG + chr7_1:5773763-5773782 None:intergenic 40.0%
TCATGAACCGACATTGTCTA+TGG - chr7_1:5773769-5773788 Msa1006850:intron 40.0%
TACATTGAACCATGACCTAG+AGG - chr7_1:5773840-5773859 Msa1006850:intron 40.0%
AACTAAACCAAACATCGACC+AGG + chr7_1:5773871-5773890 None:intergenic 40.0%
GCAACAAAAAGTGGTAGGAA+TGG - chr7_1:5774190-5774209 Msa1006850:CDS 40.0%
ACAAAAAGTGGTAGGAATGG+AGG - chr7_1:5774193-5774212 Msa1006850:CDS 40.0%
TAATGCCAATCCCCATTACT+TGG - chr7_1:5774279-5774298 Msa1006850:CDS 40.0%
TGCAAAGCTACCAAGTAATG+GGG + chr7_1:5774292-5774311 None:intergenic 40.0%
! GTAACTATATGTGTCGGTGT+CGG - chr7_1:5774565-5774584 Msa1006850:intron 40.0%
TGCAGTAGTCCTATGAAACA+TGG + chr7_1:5774637-5774656 None:intergenic 40.0%
GTTTCATAGGACTACTGCAT+CGG - chr7_1:5774638-5774657 Msa1006850:intron 40.0%
AGGGTCATAGAAAAATTGGG+TGG + chr7_1:5774887-5774906 None:intergenic 40.0%
AAGAAACTATTAATGCCGCG+TGG + chr7_1:5775183-5775202 None:intergenic 40.0%
TGGGACATTTGTGTCTTTCT+TGG - chr7_1:5775283-5775302 Msa1006850:intron 40.0%
GGGACATTTGTGTCTTTCTT+GGG - chr7_1:5775284-5775303 Msa1006850:intron 40.0%
! CTGACCAATATGGATTGAGA+AGG - chr7_1:5775352-5775371 Msa1006850:intron 40.0%
AGAAGGTTCAATGAAGTAGC+TGG - chr7_1:5775369-5775388 Msa1006850:intron 40.0%
!! ATGAACCTTTTCAAGGTCCA+AGG - chr7_1:5775436-5775455 Msa1006850:intron 40.0%
!! TGAACCTTTTCAAGGTCCAA+GGG - chr7_1:5775437-5775456 Msa1006850:intron 40.0%
TATGAAGCACAGACACTCTT+CGG - chr7_1:5775626-5775645 Msa1006850:intron 40.0%
TCGCAAATTATTAGCGGTGT+TGG - chr7_1:5775728-5775747 Msa1006850:intron 40.0%
TATTGTGTTTGTGTCGTGTC+TGG - chr7_1:5775765-5775784 Msa1006850:intron 40.0%
CCCACATAGTTCAAAGAAAG+TGG + chr7_1:5776064-5776083 None:intergenic 40.0%
! TACTAGCATGTCACTTGTGA+TGG + chr7_1:5776216-5776235 None:intergenic 40.0%
CTAGAAGTTGTGAATCAGCA+GGG + chr7_1:5776349-5776368 None:intergenic 40.0%
ACTAGAAGTTGTGAATCAGC+AGG + chr7_1:5776350-5776369 None:intergenic 40.0%
!! TGCTGATTCACAACTTCTAG+TGG - chr7_1:5776349-5776368 Msa1006850:CDS 40.0%
! TTAGGGCGCCAAAATATTGT+TGG - chr7_1:5776603-5776622 Msa1006850:CDS 40.0%
GCGACTCCAAAAATCAAACT+TGG + chr7_1:5776666-5776685 None:intergenic 40.0%
!!! TTTTGGAATTGCTCCCATAG+CGG - chr7_1:5776690-5776709 Msa1006850:CDS 40.0%
! CTTAAGGTATTTCACCACCT+AGG + chr7_1:5776717-5776736 None:intergenic 40.0%
CTAGGTGGTGAAATACCTTA+AGG - chr7_1:5776715-5776734 Msa1006850:CDS 40.0%
TTAGGATCTTTGACCTCTAC+GGG + chr7_1:5776743-5776762 None:intergenic 40.0%
GAAGGAAAAGAGATTGAGAG+AGG - chr7_1:5777028-5777047 Msa1006850:CDS 40.0%
!!! TTGAGAGAGGTTTTAAGGAG+TGG - chr7_1:5777041-5777060 Msa1006850:CDS 40.0%
TAACGACTGATCAACTAGCA+TGG - chr7_1:5777180-5777199 Msa1006850:CDS 40.0%
CCAAGCAACTAGTTAGACAT+AGG + chr7_1:5777366-5777385 None:intergenic 40.0%
CCTATGTCTAACTAGTTGCT+TGG - chr7_1:5777363-5777382 Msa1006850:CDS 40.0%
AATATTTGCATGGCACCACA+TGG + chr7_1:5777406-5777425 None:intergenic 40.0%
TCCGTTGGCGAAAAATCATG+TGG - chr7_1:5772731-5772750 Msa1006850:intron 45.0%
! GCCACATGATTTTTCGCCAA+CGG + chr7_1:5772735-5772754 None:intergenic 45.0%
ATTGCGCATACAGGAGGTTT+CGG - chr7_1:5772833-5772852 Msa1006850:intron 45.0%
GCTCAAGAATTCGGAACAAG+AGG - chr7_1:5772947-5772966 Msa1006850:intron 45.0%
TCGGAACAAGAGGTTGTTGA+TGG - chr7_1:5772957-5772976 Msa1006850:intron 45.0%
CGGAACAAGAGGTTGTTGAT+GGG - chr7_1:5772958-5772977 Msa1006850:intron 45.0%
TCTTCTTCTCCGAAATCGTC+CGG + chr7_1:5773266-5773285 None:intergenic 45.0%
AAAGTGGTAGGAATGGAGGT+TGG - chr7_1:5774197-5774216 Msa1006850:CDS 45.0%
GGAATGGAGGTTGGACATTA+AGG - chr7_1:5774206-5774225 Msa1006850:CDS 45.0%
! AGCTACCAAGTAATGGGGAT+TGG + chr7_1:5774287-5774306 None:intergenic 45.0%
!! TTCTCGGATTAGCTGTGTTC+CGG + chr7_1:5774610-5774629 None:intergenic 45.0%
ATCACATGCATTCTTCCACG+CGG - chr7_1:5775165-5775184 Msa1006850:intron 45.0%
TCAACCCTTGGACCTTGAAA+AGG + chr7_1:5775444-5775463 None:intergenic 45.0%
TGTTGCAGAAGACAAAGGCA+AGG - chr7_1:5776151-5776170 Msa1006850:CDS 45.0%
TGGTGACATGACTCTCTTTC+AGG - chr7_1:5776632-5776651 Msa1006850:CDS 45.0%
! TTTGGAATTGCTCCCATAGC+GGG - chr7_1:5776691-5776710 Msa1006850:CDS 45.0%
!! TTATATACATAAAAATAAAA+GGG + chr7_1:5774906-5774925 None:intergenic 5.0%
!! TTTATATACATAAAAATAAA+AGG + chr7_1:5774907-5774926 None:intergenic 5.0%
!! CATGAAGAGGTGGGAGTGTT+TGG - chr7_1:5772423-5772442 Msa1006850:CDS 50.0%
GGTTATGAGCCGGACGATTT+CGG - chr7_1:5773254-5773273 Msa1006850:CDS 50.0%
!! GAACCGGTTCGACACACTTT+GGG - chr7_1:5773391-5773410 Msa1006850:intron 50.0%
GGTGAGGACCCTACTAAATC+TGG - chr7_1:5773996-5774015 Msa1006850:CDS 50.0%
ACATGAGTCGTGTCCTACAC+CGG - chr7_1:5774588-5774607 Msa1006850:intron 50.0%
! GATTAGCTGTGTTCCGGTGT+AGG + chr7_1:5774604-5774623 None:intergenic 50.0%
CATGTGGCCGATGATTCAGC+TGG - chr7_1:5772747-5772766 Msa1006850:intron 55.0%
!! CGAACCGGTTCGACACACTT+TGG - chr7_1:5773390-5773409 Msa1006850:intron 55.0%
GCTCCCAAAGTGTGTCGAAC+CGG + chr7_1:5773397-5773416 None:intergenic 55.0%
!! CGACACACTTTGGGAGCATC+AGG - chr7_1:5773400-5773419 Msa1006850:intron 55.0%
ACGGATACGGACACAGACTC+TGG - chr7_1:5774480-5774499 Msa1006850:intron 55.0%
! TATGCGTCGGTGTGTCGTGT+CGG + chr7_1:5775687-5775706 None:intergenic 55.0%
! ATACCTTAAGGCGCCCGTAG+AGG - chr7_1:5776727-5776746 Msa1006850:CDS 55.0%
CAGGCGAGACCTCTAGGTCA+TGG + chr7_1:5773852-5773871 None:intergenic 60.0%
CATGACCTAGAGGTCTCGCC+TGG - chr7_1:5773850-5773869 Msa1006850:intron 60.0%
ATCGACCAGGCGAGACCTCT+AGG + chr7_1:5773858-5773877 None:intergenic 60.0%
GGTCTCGCCTGGTCGATGTT+TGG - chr7_1:5773861-5773880 Msa1006850:intron 60.0%
!! ATTGCTCCCATAGCGGGCCT+AGG - chr7_1:5776697-5776716 Msa1006850:CDS 60.0%
TCACCACCTAGGCCCGCTAT+GGG + chr7_1:5776706-5776725 None:intergenic 60.0%
TTCACCACCTAGGCCCGCTA+TGG + chr7_1:5776707-5776726 None:intergenic 60.0%
TGACCTCTACGGGCGCCTTA+AGG + chr7_1:5776733-5776752 None:intergenic 60.0%
!! GCTCCCATAGCGGGCCTAGG+TGG - chr7_1:5776700-5776719 Msa1006850:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 5772030 5777441 5772030 ID=Msa1006850;Name=Msa1006850
chr7_1 mRNA 5772030 5777441 5772030 ID=Msa1006850-mRNA-1;Parent=Msa1006850;Name=Msa1006850-mRNA-1;_AED=0.12;_eAED=0.12;_QI=37|0.8|0.83|1|0.8|0.66|6|111|771
chr7_1 exon 5772030 5772093 5772030 ID=Msa1006850-mRNA-1:exon:1836;Parent=Msa1006850-mRNA-1
chr7_1 exon 5772141 5772442 5772141 ID=Msa1006850-mRNA-1:exon:1835;Parent=Msa1006850-mRNA-1
chr7_1 exon 5773077 5773312 5773077 ID=Msa1006850-mRNA-1:exon:1834;Parent=Msa1006850-mRNA-1
chr7_1 exon 5773949 5774368 5773949 ID=Msa1006850-mRNA-1:exon:1833;Parent=Msa1006850-mRNA-1
chr7_1 exon 5775914 5777199 5775914 ID=Msa1006850-mRNA-1:exon:1832;Parent=Msa1006850-mRNA-1
chr7_1 exon 5777286 5777441 5777286 ID=Msa1006850-mRNA-1:exon:1831;Parent=Msa1006850-mRNA-1
chr7_1 five_prime_UTR 5777405 5777441 5777405 ID=Msa1006850-mRNA-1:five_prime_utr;Parent=Msa1006850-mRNA-1
chr7_1 CDS 5777286 5777404 5777286 ID=Msa1006850-mRNA-1:cds;Parent=Msa1006850-mRNA-1
chr7_1 CDS 5775914 5777199 5775914 ID=Msa1006850-mRNA-1:cds;Parent=Msa1006850-mRNA-1
chr7_1 CDS 5773949 5774368 5773949 ID=Msa1006850-mRNA-1:cds;Parent=Msa1006850-mRNA-1
chr7_1 CDS 5773077 5773312 5773077 ID=Msa1006850-mRNA-1:cds;Parent=Msa1006850-mRNA-1
chr7_1 CDS 5772188 5772442 5772188 ID=Msa1006850-mRNA-1:cds;Parent=Msa1006850-mRNA-1
chr7_1 three_prime_UTR 5772141 5772187 5772141 ID=Msa1006850-mRNA-1:three_prime_utr;Parent=Msa1006850-mRNA-1
chr7_1 three_prime_UTR 5772030 5772093 5772030 ID=Msa1006850-mRNA-1:three_prime_utr;Parent=Msa1006850-mRNA-1
Gene Sequence

>Msa1006850

ATGAGTTTTGTGAAGGGTTTTTTTCATATAAAGATTGAATTTTTCGATTGTGGCTTTTGGGTTTTTCTCATTAAGGTTATGCAAACTCTGTTTTGGGTTTTCAACAAAGTGTTCATAAGATTGTATACTTCTGAAGCAATGGTCCCAATTTGTGTTGCTGAATTTTCCAACGATAATCATGAAATTGAGTCAAGTTTTTCTGAGTCAAAAATTGAGGCTGAGGAAGAAGAATTTTATGAATGTTTTGAGGAAATTTCTGATACTGTTTCACATGAAGAGGTGGGAGTGTTTGGTTCTGAAAATGTTGATGATCATAGTGTGAATTTTGACCTAGAAAAAGAAGAGGAAAAATCAAAGTTGGTTTTCAAATTTCAATATCAAAATTGGAATTGCAATTTTAGTGAGGAATTGAAGGGAAATTTAAGTGAAAGTAGTGATTTTGACAAAAGGGGTGGTGTTTCATCTAGTGTGAACAAGTATGAGTTTATCTCAGGAAAGAGTTTTAGTAAATTCTTGGATGAACCAAAGGCTTCAAATTTTGCTGTCAAAGAGTTTTTCGTTCATCCGAATGATAATGTTCCGTTGGCGAAAAATCATGTGGCCGATGATTCAGCTGGTTTGTTATCTGAGAATAGTGAAGAGGTTGTTGGTGGCGAAGTTGTTGATAGTTTCTCAGAAAAATTGCGCATACAGGAGGTTTCGGATAAGCTCAAGAATTTGGAACAAGAGGTTGTTAATGGGAAAATTGTTGATAATGTCTCAGAAAAGTTACATGGAGTGGAGGTTTCGAATAAGCTCAAGAATTCGGAACAAGAGGTTGTTGATGGGAAAATTGTCGATAATGTCTCAGAAAAGTTACACGAAGAGGAGGTTTTAGAGAAGCTCAAGAATTCAGAACCATATGCGCGTAATTTTCTTTCTGATGATGATTTCATTTGTTCAAGCTCTGATACAAATTCTATAAGTTCTTTGGACGATGGTTTTTTGTCGGACACAGATTTTGGAACAACTACAGATTTCGATACATTGGGAAACAATGAAGAAGAAAATGTAGAAGATTTGGACTTTAAGGATGAGGAAAGCATAGAAAGTTTGGATTTTGGTTATGAGCCGGACGATTTCGGAGAAGAAGACGAAGATATAATGAATGAGCTTGGAAAATTGGAGGAAGAAATCAGACAGGAAGAATCGCTGAAACAAAAATCGATGAGTTTAACGGCTTTTGATCTTGATGAGTCGAACCGGTTCGACACACTTTGGGAGCATCAGGATTTGATAGAACAGCTGAAGATGGAACTGAAGAAAGTTAAAGCTACTGGTTTACCTACTATCTTTGAGGATTCTGAATCACCAAGGATTATGGAAGATTTGAAGCCATGGAAAATTGATGAAAAATTTCAGCAAGGTCTTATGAAGTCAAAGGACCCACTAAAATCATTTTCAATTCACAAGAAATCTTCATCAACAATCACATGCATTCTTCCACGCGGCATTAATAGTTTCTTTAGACGTAATAGAAACATTGATGCTGACCCAATGAAGAAGTTCATAAGAGAATTATATAGTGACTTGGAAATGGTTTATGTGGGACATTTGTGTCTTTCTTGGGAATTCCTTCATTGGGAATATGAAAAGGCTTTGAAGATATGGGAATCTGACCAATATGGATTGAGAAGGTTCAATGAAGTAGCTGGAGAATTTCAACAATTCCAAGTTCTTCTACAAAGATTTATAGAGAATGAACCTTTTCAAGGTCCAAGGGTTGAAAATTATGCTAGGAATCGTTGTGCCATGAAGAAACTTCTTCAAGTTCCTGTTATAAAAGAAGACAAAGGCAAGGATAAAAAGAAGTTTAGAAAAAGAGAAGTTGACAATGATGCCATCACAAGTGACATGCTAGTAGAAATATTAGAAGAATCCATTAGAACAATTTGGCGTTTCATAAGAGGTGATAAAGATGCATCAAACTTGACAATTAAATGTCTTAAAGAACAACATGTGGAGCTACAAGACCCTGCTGATTCACAACTTCTAGTGGAGATTCTAACGGATCTTCAAAAGAAGGAAAAGAGATTGAGAGAGGTTTTAAGGAGTGGAAGCTGCATATTGAAGAAATTCAAAAAGCATGATGAAGATGAAATAGATCCAGTTCTTTACTTTTTCTCTCAAGTGGATTTGAAACTTGTTTGTAGAGTGTTGAATATGTCAAGGATAACGACTGATCAACTAGCATGGTGTCGTAGTAAACTAAACAAGATCAATTTTGTAAACCGTAGGATACATGTAGAACCATCATTCTTACTTTTTCCTAATTAA

Protein sequence

>Msa1006850

MSFVKGFFHIKIEFFDCGFWVFLIKVMQTLFWVFNKVFIRLYTSEAMVPICVAEFSNDNHEIESSFSESKIEAEEEEFYECFEEISDTVSHEEVGVFGSENVDDHSVNFDLEKEEEKSKLVFKFQYQNWNCNFSEELKGNLSESSDFDKRGGVSSSVNKYEFISGKSFSKFLDEPKASNFAVKEFFVHPNDNVPLAKNHVADDSAGLLSENSEEVVGGEVVDSFSEKLRIQEVSDKLKNLEQEVVNGKIVDNVSEKLHGVEVSNKLKNSEQEVVDGKIVDNVSEKLHEEEVLEKLKNSEPYARNFLSDDDFICSSSDTNSISSLDDGFLSDTDFGTTTDFDTLGNNEEENVEDLDFKDEESIESLDFGYEPDDFGEEDEDIMNELGKLEEEIRQEESLKQKSMSLTAFDLDESNRFDTLWEHQDLIEQLKMELKKVKATGLPTIFEDSESPRIMEDLKPWKIDEKFQQGLMKSKDPLKSFSIHKKSSSTITCILPRGINSFFRRNRNIDADPMKKFIRELYSDLEMVYVGHLCLSWEFLHWEYEKALKIWESDQYGLRRFNEVAGEFQQFQVLLQRFIENEPFQGPRVENYARNRCAMKKLLQVPVIKEDKGKDKKKFRKREVDNDAITSDMLVEILEESIRTIWRFIRGDKDASNLTIKCLKEQHVELQDPADSQLLVEILTDLQKKEKRLREVLRSGSCILKKFKKHDEDEIDPVLYFFSQVDLKLVCRVLNMSRITTDQLAWCRSKLNKINFVNRRIHVEPSFLLFPN*