Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765010 | XP_003613544.1 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 1.24e-87 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765010 | sp|Q38879|TRXH2_ARATH | 49.550 | 111 | 56 | 0 | 15 | 125 | 22 | 132 | 1.51e-41 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765010 | D8L5E0 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 5.95e-88 | 260 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa0765010 | 0.813021 | 3.159891e-51 | -8.615850e-47 |
| Msa0030030 | Msa0765010 | 0.830265 | 3.237625e-55 | -8.615850e-47 |
| Msa0039200 | Msa0765010 | 0.838935 | 2.139546e-57 | -8.615850e-47 |
| Msa0055280 | Msa0765010 | 0.808506 | 2.995493e-50 | -8.615850e-47 |
| Msa0055590 | Msa0765010 | 0.815415 | 9.355895e-52 | -8.615850e-47 |
| Msa0060600 | Msa0765010 | 0.829040 | 6.428642e-55 | -8.615850e-47 |
| Msa0077330 | Msa0765010 | 0.833693 | 4.606543e-56 | -8.615850e-47 |
| Msa0086820 | Msa0765010 | 0.837655 | 4.571905e-57 | -8.615850e-47 |
| Msa0101060 | Msa0765010 | 0.813797 | 2.133603e-51 | -8.615850e-47 |
| Msa0105340 | Msa0765010 | 0.820351 | 7.179795e-53 | -8.615850e-47 |
| Msa0108850 | Msa0765010 | 0.826333 | 2.873135e-54 | -8.615850e-47 |
| Msa0110520 | Msa0765010 | 0.851810 | 6.961594e-61 | -8.615850e-47 |
| Msa0620640 | Msa0765010 | 0.804936 | 1.700081e-49 | -8.615850e-47 |
| Msa0635470 | Msa0765010 | 0.807290 | 5.434436e-50 | -8.615850e-47 |
| Msa0646390 | Msa0765010 | 0.806901 | 6.568306e-50 | -8.615850e-47 |
| Msa0653710 | Msa0765010 | 0.806142 | 9.495327e-50 | -8.615850e-47 |
| Msa0654060 | Msa0765010 | 0.818304 | 2.102454e-52 | -8.615850e-47 |
| Msa0656270 | Msa0765010 | 0.808822 | 2.564084e-50 | -8.615850e-47 |
| Msa0662850 | Msa0765010 | 0.805063 | 1.599734e-49 | -8.615850e-47 |
| Msa0700070 | Msa0765010 | 0.807861 | 4.110428e-50 | -8.615850e-47 |
| Msa0714960 | Msa0765010 | 0.826428 | 2.727233e-54 | -8.615850e-47 |
| Msa0715110 | Msa0765010 | 0.802105 | 6.569196e-49 | -8.615850e-47 |
| Msa0715120 | Msa0765010 | 0.811314 | 7.450241e-51 | -8.615850e-47 |
| Msa0718470 | Msa0765010 | 0.801849 | 7.415579e-49 | -8.615850e-47 |
| Msa0721150 | Msa0765010 | 0.854986 | 8.540826e-62 | -8.615850e-47 |
| Msa0724490 | Msa0765010 | 0.870492 | 1.400800e-66 | -8.615850e-47 |
| Msa0736930 | Msa0765010 | 0.814629 | 1.397933e-51 | -8.615850e-47 |
| Msa0739570 | Msa0765010 | 0.807447 | 5.032409e-50 | -8.615850e-47 |
| Msa0751000 | Msa0765010 | 0.800371 | 1.487131e-48 | -8.615850e-47 |
| Msa0756410 | Msa0765010 | 0.805063 | 1.599348e-49 | -8.615850e-47 |
| Msa0757050 | Msa0765010 | 0.848755 | 5.006945e-60 | -8.615850e-47 |
| Msa0761760 | Msa0765010 | 0.854015 | 1.630281e-61 | -8.615850e-47 |
| Msa0765010 | Msa0765020 | 0.900596 | 6.252194e-78 | -8.615850e-47 |
| Msa0765010 | Msa0765040 | 0.888318 | 6.564525e-73 | -8.615850e-47 |
| Msa0765010 | Msa0771960 | 0.814604 | 1.415581e-51 | -8.615850e-47 |
| Msa0765010 | Msa0798030 | 0.846008 | 2.844765e-59 | -8.615850e-47 |
| Msa0765010 | Msa0798060 | 0.814996 | 1.159096e-51 | -8.615850e-47 |
| Msa0765010 | Msa0798070 | 0.800569 | 1.355326e-48 | -8.615850e-47 |
| Msa0765010 | Msa0801100 | 0.813434 | 2.564683e-51 | -8.615850e-47 |
| Msa0765010 | Msa0804060 | 0.837092 | 6.373311e-57 | -8.615850e-47 |
| Msa0765010 | Msa0819670 | 0.810177 | 1.311946e-50 | -8.615850e-47 |
| Msa0765010 | Msa0836620 | 0.835658 | 1.476516e-56 | -8.615850e-47 |
| Msa0765010 | Msa0836630 | 0.811804 | 5.827717e-51 | -8.615850e-47 |
| Msa0765010 | Msa0842240 | 0.848517 | 5.828454e-60 | -8.615850e-47 |
| Msa0765010 | Msa0844330 | 0.849287 | 3.563068e-60 | -8.615850e-47 |
| Msa0765010 | Msa0844350 | 0.900176 | 9.521042e-78 | -8.615850e-47 |
| Msa0765010 | Msa0860270 | 0.811675 | 6.216974e-51 | -8.615850e-47 |
| Msa0765010 | Msa0883430 | 0.807252 | 5.535250e-50 | -8.615850e-47 |
| Msa0765010 | Msa0883670 | 0.808690 | 2.735573e-50 | -8.615850e-47 |
| Msa0765010 | Msa0897390 | 0.816155 | 6.395999e-52 | -8.615850e-47 |
| Msa0765010 | Msa0908170 | 0.856197 | 3.784647e-62 | -8.615850e-47 |
| Msa0765010 | Msa0951720 | 0.800263 | 1.564657e-48 | -8.615850e-47 |
| Msa0765010 | Msa0967450 | 0.804814 | 1.802850e-49 | -8.615850e-47 |
| Msa0765010 | Msa0978000 | 0.825938 | 3.566935e-54 | -8.615850e-47 |
| Msa0765010 | Msa0984850 | 0.832176 | 1.097474e-55 | -8.615850e-47 |
| Msa0765010 | Msa0994740 | 0.803270 | 3.776594e-49 | -8.615850e-47 |
| Msa0765010 | Msa1016110 | 0.816610 | 5.060396e-52 | -8.615850e-47 |
| Msa0765010 | Msa1016130 | 0.804709 | 1.896769e-49 | -8.615850e-47 |
| Msa0765010 | Msa1030280 | 0.807593 | 4.685448e-50 | -8.615850e-47 |
| Msa0765010 | Msa1041550 | 0.817590 | 3.047121e-52 | -8.615850e-47 |
| Msa0765010 | Msa1080770 | 0.812505 | 4.099987e-51 | -8.615850e-47 |
| Msa0765010 | Msa1081530 | 0.809438 | 1.891820e-50 | -8.615850e-47 |
| Msa0765010 | Msa1087470 | 0.805137 | 1.543634e-49 | -8.615850e-47 |
| Msa0765010 | Msa1166450 | 0.837531 | 4.920800e-57 | -8.615850e-47 |
| Msa0765010 | Msa1175590 | 0.819216 | 1.304523e-52 | -8.615850e-47 |
| Msa0765010 | Msa1188380 | 0.800608 | 1.330594e-48 | -8.615850e-47 |
| Msa0765010 | Msa1201610 | 0.827481 | 1.527925e-54 | -8.615850e-47 |
| Msa0765010 | Msa1221690 | 0.811201 | 7.879600e-51 | -8.615850e-47 |
| Msa0765010 | Msa1221900 | 0.831206 | 1.903327e-55 | -8.615850e-47 |
| Msa0765010 | Msa1224690 | 0.807368 | 5.230114e-50 | -8.615850e-47 |
| Msa0765010 | Msa1231520 | 0.824251 | 8.930219e-54 | -8.615850e-47 |
| Msa0765010 | Msa1235760 | 0.813275 | 2.779811e-51 | -8.615850e-47 |
| Msa0765010 | Msa1235770 | 0.826058 | 3.340229e-54 | -8.615850e-47 |
| Msa0765010 | Msa1242430 | 0.818926 | 1.518724e-52 | -8.615850e-47 |
| Msa0765010 | Msa1254470 | 0.853413 | 2.428995e-61 | -8.615850e-47 |
| Msa0765010 | Msa1265070 | 0.826098 | 3.268914e-54 | -8.615850e-47 |
| Msa0765010 | Msa1265250 | 0.805506 | 1.292065e-49 | -8.615850e-47 |
| Msa0765010 | Msa1266720 | 0.807083 | 6.009993e-50 | -8.615850e-47 |
| Msa0765010 | Msa1272130 | 0.800249 | 1.575064e-48 | -8.615850e-47 |
| Msa0765010 | Msa1316170 | 0.801452 | 8.946618e-49 | -8.615850e-47 |
| Msa0765010 | Msa1319440 | 0.816918 | 4.316825e-52 | -8.615850e-47 |
| Msa0765010 | Msa1323440 | 0.829556 | 4.818595e-55 | -8.615850e-47 |
| Msa0765010 | Msa1331730 | 0.808900 | 2.466928e-50 | -8.615850e-47 |
| Msa0765010 | Msa1337730 | 0.808008 | 3.825274e-50 | -8.615850e-47 |
| Msa0765010 | Msa1343770 | 0.807667 | 4.518462e-50 | -8.615850e-47 |
| Msa0765010 | Msa1346540 | 0.816461 | 5.465798e-52 | -8.615850e-47 |
| Msa0765010 | Msa1357720 | 0.840716 | 7.354851e-58 | -8.615850e-47 |
| Msa0765010 | Msa1365040 | -0.818836 | 1.591856e-52 | -8.615850e-47 |
| Msa0765010 | Msa1367390 | -0.823188 | 1.584558e-53 | -8.615850e-47 |
| Msa0765010 | Msa1370650 | 0.814315 | 1.639809e-51 | -8.615850e-47 |
| Msa0765010 | Msa1386520 | 0.829711 | 4.418370e-55 | -8.615850e-47 |
| Msa0765010 | Msa1405470 | 0.861359 | 1.084750e-63 | -8.615850e-47 |
| Msa0765010 | Msa1407200 | 0.803974 | 2.697907e-49 | -8.615850e-47 |
| Msa0765010 | Msa1409050 | 0.804069 | 2.577968e-49 | -8.615850e-47 |
| Msa0765010 | Msa1409760 | 0.803969 | 2.704457e-49 | -8.615850e-47 |
| Msa0765010 | Msa1436040 | 0.802790 | 4.746057e-49 | -8.615850e-47 |
| Msa0765010 | Msa1457670 | -0.809163 | 2.167854e-50 | -8.615850e-47 |
| Msa0133670 | Msa0765010 | 0.837353 | 5.464309e-57 | -8.615850e-47 |
| Msa0133880 | Msa0765010 | 0.843610 | 1.260130e-58 | -8.615850e-47 |
| Msa0151690 | Msa0765010 | 0.825667 | 4.137467e-54 | -8.615850e-47 |
| Msa0151950 | Msa0765010 | 0.827517 | 1.497359e-54 | -8.615850e-47 |
| Msa0169960 | Msa0765010 | 0.855565 | 5.795017e-62 | -8.615850e-47 |
| Msa0175480 | Msa0765010 | 0.800209 | 1.604302e-48 | -8.615850e-47 |
| Msa0181290 | Msa0765010 | 0.855310 | 6.873452e-62 | -8.615850e-47 |
| Msa0184120 | Msa0765010 | 0.834452 | 2.973272e-56 | -8.615850e-47 |
| Msa0213090 | Msa0765010 | 0.838415 | 2.914668e-57 | -8.615850e-47 |
| Msa0216560 | Msa0765010 | 0.828828 | 7.237468e-55 | -8.615850e-47 |
| Msa0221800 | Msa0765010 | 0.813132 | 2.987219e-51 | -8.615850e-47 |
| Msa0223100 | Msa0765010 | 0.812793 | 3.544548e-51 | -8.615850e-47 |
| Msa0223290 | Msa0765010 | 0.819857 | 9.317650e-53 | -8.615850e-47 |
| Msa0223380 | Msa0765010 | 0.828684 | 7.841785e-55 | -8.615850e-47 |
| Msa0226290 | Msa0765010 | 0.827406 | 1.592225e-54 | -8.615850e-47 |
| Msa0369750 | Msa0765010 | 0.815170 | 1.060380e-51 | -8.615850e-47 |
| Msa0370870 | Msa0765010 | 0.821991 | 3.007818e-53 | -8.615850e-47 |
| Msa0377530 | Msa0765010 | 0.822448 | 2.356088e-53 | -8.615850e-47 |
| Msa0388030 | Msa0765010 | -0.804566 | 2.031779e-49 | -8.615850e-47 |
| Msa0389830 | Msa0765010 | 0.816884 | 4.393066e-52 | -8.615850e-47 |
| Msa0411800 | Msa0765010 | 0.811985 | 5.322119e-51 | -8.615850e-47 |
| Msa0419050 | Msa0765010 | 0.844156 | 8.998133e-59 | -8.615850e-47 |
| Msa0427050 | Msa0765010 | 0.814255 | 1.691309e-51 | -8.615850e-47 |
| Msa0440110 | Msa0765010 | 0.804987 | 1.658839e-49 | -8.615850e-47 |
| Msa0463960 | Msa0765010 | 0.809929 | 1.484144e-50 | -8.615850e-47 |
| Msa0464900 | Msa0765010 | 0.827966 | 1.168433e-54 | -8.615850e-47 |
| Msa0473240 | Msa0765010 | 0.834909 | 2.281115e-56 | -8.615850e-47 |
| Msa0473450 | Msa0765010 | 0.800858 | 1.183398e-48 | -8.615850e-47 |
| Msa0253370 | Msa0765010 | 0.854395 | 1.266926e-61 | -8.615850e-47 |
| Msa0256170 | Msa0765010 | 0.823574 | 1.287372e-53 | -8.615850e-47 |
| Msa0256430 | Msa0765010 | 0.822316 | 2.528002e-53 | -8.615850e-47 |
| Msa0266000 | Msa0765010 | -0.811296 | 7.514486e-51 | -8.615850e-47 |
| Msa0288320 | Msa0765010 | 0.876364 | 1.481063e-68 | -8.615850e-47 |
| Msa0292180 | Msa0765010 | 0.827594 | 1.435635e-54 | -8.615850e-47 |
| Msa0295840 | Msa0765010 | 0.818298 | 2.108444e-52 | -8.615850e-47 |
| Msa0299200 | Msa0765010 | 0.804554 | 2.043342e-49 | -8.615850e-47 |
| Msa0304700 | Msa0765010 | 0.810750 | 9.870300e-51 | -8.615850e-47 |
| Msa0306130 | Msa0765010 | 0.811180 | 7.962980e-51 | -8.615850e-47 |
| Msa0312310 | Msa0765010 | 0.802833 | 4.649882e-49 | -8.615850e-47 |
| Msa0330270 | Msa0765010 | 0.823936 | 1.058728e-53 | -8.615850e-47 |
| Msa0330400 | Msa0765010 | 0.846986 | 1.538169e-59 | -8.615850e-47 |
| Msa0339870 | Msa0765010 | 0.831726 | 1.417900e-55 | -8.615850e-47 |
| Msa0492740 | Msa0765010 | 0.830241 | 3.280163e-55 | -8.615850e-47 |
| Msa0502910 | Msa0765010 | 0.812753 | 3.617703e-51 | -8.615850e-47 |
| Msa0510560 | Msa0765010 | 0.837137 | 6.207796e-57 | -8.615850e-47 |
| Msa0517490 | Msa0765010 | 0.819434 | 1.163624e-52 | -8.615850e-47 |
| Msa0524200 | Msa0765010 | -0.816981 | 4.177791e-52 | -8.615850e-47 |
| Msa0549740 | Msa0765010 | 0.801392 | 9.201073e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765010 | MtrunA17_Chr5g0415741 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 1.15e-91 | 260 |
| Msa0765010 | MtrunA17_Chr5g0415771 | 65.873 | 126 | 42 | 1 | 1 | 125 | 1 | 126 | 3.58e-52 | 160 |
| Msa0765010 | MtrunA17_Chr5g0415761 | 65.625 | 128 | 42 | 1 | 1 | 126 | 1 | 128 | 4.40e-52 | 160 |
| Msa0765010 | MtrunA17_Chr7g0216481 | 56.604 | 106 | 46 | 0 | 20 | 125 | 28 | 133 | 4.70e-44 | 140 |
| Msa0765010 | MtrunA17_Chr3g0142051 | 48.649 | 111 | 57 | 0 | 14 | 124 | 2 | 112 | 2.81e-37 | 122 |
| Msa0765010 | MtrunA17_Chr1g0155721 | 44.248 | 113 | 63 | 0 | 14 | 126 | 2 | 114 | 1.75e-35 | 118 |
| Msa0765010 | MtrunA17_Chr5g0404831 | 45.946 | 111 | 60 | 0 | 14 | 124 | 4 | 114 | 2.99e-35 | 117 |
| Msa0765010 | MtrunA17_Chr8g0393201 | 43.269 | 104 | 59 | 0 | 18 | 121 | 227 | 330 | 1.66e-25 | 98.2 |
| Msa0765010 | MtrunA17_Chr2g0280411 | 39.048 | 105 | 64 | 0 | 18 | 122 | 9 | 113 | 3.64e-23 | 87.4 |
| Msa0765010 | MtrunA17_Chr8g0334481 | 33.333 | 105 | 70 | 0 | 17 | 121 | 25 | 129 | 4.16e-23 | 87.4 |
| Msa0765010 | MtrunA17_Chr7g0245141 | 35.238 | 105 | 68 | 0 | 17 | 121 | 23 | 127 | 4.26e-23 | 87.4 |
| Msa0765010 | MtrunA17_Chr4g0042051 | 37.383 | 107 | 63 | 2 | 18 | 122 | 10 | 114 | 3.77e-21 | 82.0 |
| Msa0765010 | MtrunA17_Chr2g0319291 | 32.381 | 105 | 71 | 0 | 18 | 122 | 10 | 114 | 6.20e-20 | 79.0 |
| Msa0765010 | MtrunA17_Chr1g0201781 | 33.721 | 86 | 54 | 2 | 39 | 123 | 77 | 160 | 1.48e-15 | 68.9 |
| Msa0765010 | MtrunA17_Chr4g0052481 | 35.366 | 82 | 51 | 1 | 44 | 123 | 85 | 166 | 7.17e-15 | 67.0 |
| Msa0765010 | MtrunA17_Chr7g0249461 | 36.364 | 88 | 55 | 1 | 40 | 126 | 98 | 185 | 8.04e-15 | 67.4 |
| Msa0765010 | MtrunA17_Chr8g0360031 | 35.227 | 88 | 55 | 2 | 38 | 123 | 87 | 174 | 1.13e-14 | 66.6 |
| Msa0765010 | MtrunA17_Chr3g0125821 | 32.323 | 99 | 62 | 3 | 27 | 123 | 76 | 171 | 2.87e-14 | 65.5 |
| Msa0765010 | MtrunA17_Chr2g0317731 | 35.227 | 88 | 55 | 2 | 38 | 123 | 84 | 171 | 8.31e-14 | 64.3 |
| Msa0765010 | MtrunA17_Chr1g0211871 | 32.911 | 79 | 49 | 2 | 38 | 115 | 84 | 159 | 1.55e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765010 | AT5G39950.1 | 49.550 | 111 | 56 | 0 | 15 | 125 | 22 | 132 | 1.53e-42 | 137 |
| Msa0765010 | AT1G69880.1 | 46.729 | 107 | 57 | 0 | 17 | 123 | 36 | 142 | 1.15e-34 | 117 |
| Msa0765010 | AT1G59730.1 | 40.625 | 128 | 73 | 1 | 1 | 125 | 1 | 128 | 1.89e-34 | 116 |
| Msa0765010 | AT3G51030.1 | 43.636 | 110 | 62 | 0 | 14 | 123 | 2 | 111 | 5.74e-34 | 114 |
| Msa0765010 | AT1G19730.1 | 47.321 | 112 | 58 | 1 | 14 | 124 | 2 | 113 | 2.71e-33 | 113 |
| Msa0765010 | AT1G45145.1 | 44.860 | 107 | 59 | 0 | 18 | 124 | 5 | 111 | 4.92e-32 | 110 |
| Msa0765010 | AT5G42980.1 | 44.954 | 109 | 60 | 0 | 18 | 126 | 5 | 113 | 1.55e-31 | 108 |
| Msa0765010 | AT3G17880.1 | 41.748 | 103 | 60 | 0 | 19 | 121 | 271 | 373 | 4.09e-23 | 92.8 |
| Msa0765010 | AT3G17880.2 | 41.748 | 103 | 60 | 0 | 19 | 121 | 264 | 366 | 4.17e-23 | 92.4 |
| Msa0765010 | AT3G56420.1 | 36.957 | 92 | 58 | 0 | 28 | 119 | 50 | 141 | 6.88e-21 | 82.8 |
| Msa0765010 | AT3G56420.2 | 36.957 | 92 | 58 | 0 | 28 | 119 | 50 | 141 | 6.88e-21 | 82.8 |
| Msa0765010 | AT3G56420.3 | 36.957 | 92 | 58 | 0 | 28 | 119 | 50 | 141 | 6.88e-21 | 82.8 |
| Msa0765010 | AT3G08710.2 | 32.432 | 111 | 73 | 1 | 11 | 121 | 18 | 126 | 2.78e-20 | 80.5 |
| Msa0765010 | AT3G08710.3 | 32.432 | 111 | 73 | 1 | 11 | 121 | 18 | 126 | 2.78e-20 | 80.5 |
| Msa0765010 | AT3G08710.1 | 32.432 | 111 | 73 | 1 | 11 | 121 | 18 | 126 | 2.78e-20 | 80.5 |
| Msa0765010 | AT1G11530.1 | 34.286 | 105 | 69 | 0 | 18 | 122 | 2 | 106 | 4.87e-19 | 77.0 |
| Msa0765010 | AT2G40790.2 | 33.696 | 92 | 61 | 0 | 28 | 119 | 50 | 141 | 8.36e-17 | 72.0 |
| Msa0765010 | AT2G40790.1 | 33.696 | 92 | 61 | 0 | 28 | 119 | 50 | 141 | 8.36e-17 | 72.0 |
| Msa0765010 | AT1G43560.1 | 29.915 | 117 | 77 | 3 | 1 | 112 | 33 | 149 | 3.42e-16 | 70.9 |
| Msa0765010 | AT5G16400.1 | 37.500 | 88 | 54 | 1 | 40 | 126 | 97 | 184 | 5.76e-16 | 70.5 |
| Msa0765010 | AT3G02730.1 | 39.080 | 87 | 52 | 1 | 41 | 126 | 88 | 174 | 1.17e-15 | 69.7 |
| Msa0765010 | AT3G15360.1 | 34.066 | 91 | 52 | 3 | 38 | 123 | 102 | 189 | 9.52e-15 | 67.4 |
| Msa0765010 | AT4G03520.1 | 39.437 | 71 | 42 | 1 | 43 | 112 | 101 | 171 | 1.01e-14 | 67.4 |
| Msa0765010 | AT1G76760.1 | 30.526 | 95 | 59 | 3 | 33 | 120 | 70 | 164 | 1.54e-14 | 66.6 |
| Msa0765010 | AT1G03680.1 | 37.037 | 81 | 49 | 2 | 45 | 123 | 97 | 177 | 4.08e-14 | 65.5 |
| Msa0765010 | AT2G35010.2 | 38.554 | 83 | 47 | 2 | 44 | 123 | 110 | 191 | 6.22e-14 | 65.5 |
| Msa0765010 | AT2G35010.1 | 38.554 | 83 | 47 | 2 | 44 | 123 | 110 | 191 | 6.22e-14 | 65.5 |
| Msa0765010 | AT1G31020.1 | 30.909 | 110 | 74 | 1 | 16 | 123 | 47 | 156 | 7.37e-14 | 64.7 |
| Msa0765010 | AT1G52990.1 | 35.165 | 91 | 57 | 2 | 34 | 123 | 222 | 311 | 9.04e-13 | 63.5 |
| Msa0765010 | AT1G50320.1 | 34.177 | 79 | 48 | 2 | 38 | 115 | 85 | 160 | 1.17e-11 | 59.3 |
Find 39 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCATTCCACTGCTAAA+TGG | 0.238150 | 5_2:-25495897 | Msa0765010:CDS |
| GCTTGATGTTGATGAGTTAT+TGG | 0.264813 | 5_2:-25495648 | Msa0765010:intron |
| TCAATAAAATAATATATAAT+TGG | 0.268866 | 5_2:-25495155 | Msa0765010:three_prime_UTR |
| GCAGCAAAATCTTTCAAAAC+TGG | 0.287096 | 5_2:+25495698 | None:intergenic |
| CTCATTCTCCTTTGATTTCA+AGG | 0.289089 | 5_2:-25495312 | Msa0765010:three_prime_UTR |
| TTATTGATTTCACAGCTAAA+TGG | 0.322109 | 5_2:-25495745 | Msa0765010:CDS |
| TGTTAATTTGTTGGGATGAT+TGG | 0.356739 | 5_2:+25496063 | None:intergenic |
| TTGTTGGGATGATTGGAAAT+TGG | 0.378161 | 5_2:+25496070 | None:intergenic |
| GGGAGTGTCTCAAACCTTCC+AGG | 0.392325 | 5_2:-25495486 | Msa0765010:CDS |
| TATGATGTTTGTTAATTTGT+TGG | 0.397122 | 5_2:+25496054 | None:intergenic |
| TAAAGTGGTGGGAGCAAGAA+AGG | 0.432390 | 5_2:-25495414 | Msa0765010:CDS |
| TTCTTAATGAGTAGAAAAGT+TGG | 0.438267 | 5_2:+25495452 | None:intergenic |
| TTCAAGGGATCTACAAGATC+AGG | 0.446787 | 5_2:-25495296 | Msa0765010:three_prime_UTR |
| ATGATGTTTGTTAATTTGTT+GGG | 0.449780 | 5_2:+25496055 | None:intergenic |
| GTGTGGACCTTGCAGAGTTA+TGG | 0.473517 | 5_2:-25495723 | Msa0765010:CDS |
| GGGATGATTGGAAATTGGTT+GGG | 0.476532 | 5_2:+25496075 | None:intergenic |
| CACTCAAAGGATACAAATAT+AGG | 0.481261 | 5_2:-25495247 | Msa0765010:three_prime_UTR |
| TCATTCTCCTTTGATTTCAA+GGG | 0.482125 | 5_2:-25495311 | Msa0765010:three_prime_UTR |
| TGGGATGATTGGAAATTGGT+TGG | 0.482987 | 5_2:+25496074 | None:intergenic |
| AGGAAAGGTTGTTGATAAAG+TGG | 0.493130 | 5_2:-25495429 | Msa0765010:CDS |
| TAGCAGTGGAATGGAATGTA+AGG | 0.498154 | 5_2:+25495902 | None:intergenic |
| TCTACTCATTAAGAAAGGAA+AGG | 0.517021 | 5_2:-25495444 | Msa0765010:CDS |
| ATACACAAAATTATACAAGT+TGG | 0.527315 | 5_2:+25495954 | None:intergenic |
| CATTCCATTTAGCAGTGGAA+TGG | 0.530623 | 5_2:+25495893 | None:intergenic |
| GGGATATATATAGTGTAGAA+AGG | 0.532837 | 5_2:+25496095 | None:intergenic |
| GTGTCATCAATTTCACTCAA+AGG | 0.533950 | 5_2:-25495260 | Msa0765010:three_prime_UTR |
| AAGATCAGGATGCAATAAGT+TGG | 0.563550 | 5_2:-25495282 | Msa0765010:three_prime_UTR |
| TGGAATGGAATGTAAGGACA+TGG | 0.568326 | 5_2:+25495908 | None:intergenic |
| AAGTTGGCAATGAATGCACC+TGG | 0.579245 | 5_2:+25495468 | None:intergenic |
| TGTAGATCCCTTGAAATCAA+AGG | 0.581835 | 5_2:+25495304 | None:intergenic |
| TGGCAATGAATGCACCTGGA+AGG | 0.589602 | 5_2:+25495472 | None:intergenic |
| GATTTCACAGCTAAATGGTG+TGG | 0.590907 | 5_2:-25495740 | Msa0765010:CDS |
| AAGGTTGTTGATAAAGTGGT+GGG | 0.601867 | 5_2:-25495425 | Msa0765010:CDS |
| ATGAGCATTCCATTTAGCAG+TGG | 0.609708 | 5_2:+25495888 | None:intergenic |
| AAAGGTTGTTGATAAAGTGG+TGG | 0.610487 | 5_2:-25495426 | Msa0765010:CDS |
| ACTGGATCCATAACTCTGCA+AGG | 0.612143 | 5_2:+25495716 | None:intergenic |
| CAAGAAAGGAGGAACTACAA+AGG | 0.696570 | 5_2:-25495400 | Msa0765010:CDS |
| AGTGGTGGGAGCAAGAAAGG+AGG | 0.703427 | 5_2:-25495411 | Msa0765010:CDS |
| GGAATGGAATGTAAGGACAT+GGG | 0.736550 | 5_2:+25495909 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAGAAACTAATAAAC+TGG | - | chr5_2:25495390-25495409 | Msa0765010:CDS | 15.0% |
| !!! | TTTTAAAGAAACTAATAAAC+TGG | - | chr5_2:25495390-25495409 | Msa0765010:CDS | 15.0% |
| !!! | ATGATGTTTGTTAATTTGTT+GGG | + | chr5_2:25495195-25495214 | None:intergenic | 20.0% |
| !!! | TATGATGTTTGTTAATTTGT+TGG | + | chr5_2:25495196-25495215 | None:intergenic | 20.0% |
| !! | ATACACAAAATTATACAAGT+TGG | + | chr5_2:25495296-25495315 | None:intergenic | 20.0% |
| !!! | TCTTATGCATTATTTTTCTT+TGG | - | chr5_2:25495470-25495489 | Msa0765010:CDS | 20.0% |
| !!! | TCATTCTTTTATCATATAAG+AGG | - | chr5_2:25496025-25496044 | Msa0765010:five_prime_UTR | 20.0% |
| !!! | ATGATGTTTGTTAATTTGTT+GGG | + | chr5_2:25495195-25495214 | None:intergenic | 20.0% |
| !!! | TATGATGTTTGTTAATTTGT+TGG | + | chr5_2:25495196-25495215 | None:intergenic | 20.0% |
| !! | ATACACAAAATTATACAAGT+TGG | + | chr5_2:25495296-25495315 | None:intergenic | 20.0% |
| !!! | TCTTATGCATTATTTTTCTT+TGG | - | chr5_2:25495470-25495489 | Msa0765010:CDS | 20.0% |
| !!! | TCATTCTTTTATCATATAAG+AGG | - | chr5_2:25496025-25496044 | Msa0765010:five_prime_UTR | 20.0% |
| !!! | CATACACCTAAATCATTTTT+TGG | - | chr5_2:25495242-25495261 | Msa0765010:three_prime_UTR | 25.0% |
| ! | GATGAACCAAAAAATGATTT+AGG | + | chr5_2:25495251-25495270 | None:intergenic | 25.0% |
| !!! | TTATTTTTCTTTGGCATAGA+TGG | - | chr5_2:25495479-25495498 | Msa0765010:CDS | 25.0% |
| !!! | TTATTGATTTCACAGCTAAA+TGG | - | chr5_2:25495502-25495521 | Msa0765010:intron | 25.0% |
| ! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5_2:25495640-25495659 | None:intergenic | 25.0% |
| !! | TGTTTTTCCCACAATATAAT+TGG | - | chr5_2:25495733-25495752 | Msa0765010:CDS | 25.0% |
| ! | TTCTTAATGAGTAGAAAAGT+TGG | + | chr5_2:25495798-25495817 | None:intergenic | 25.0% |
| !! | ACTTTTCTACTCATTAAGAA+AGG | - | chr5_2:25495798-25495817 | Msa0765010:intron | 25.0% |
| !!! | CATACACCTAAATCATTTTT+TGG | - | chr5_2:25495242-25495261 | Msa0765010:three_prime_UTR | 25.0% |
| ! | GATGAACCAAAAAATGATTT+AGG | + | chr5_2:25495251-25495270 | None:intergenic | 25.0% |
| !!! | TTATTTTTCTTTGGCATAGA+TGG | - | chr5_2:25495479-25495498 | Msa0765010:CDS | 25.0% |
| !!! | TTATTGATTTCACAGCTAAA+TGG | - | chr5_2:25495502-25495521 | Msa0765010:intron | 25.0% |
| ! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5_2:25495640-25495659 | None:intergenic | 25.0% |
| !! | TGTTTTTCCCACAATATAAT+TGG | - | chr5_2:25495733-25495752 | Msa0765010:CDS | 25.0% |
| ! | TTCTTAATGAGTAGAAAAGT+TGG | + | chr5_2:25495798-25495817 | None:intergenic | 25.0% |
| !! | ACTTTTCTACTCATTAAGAA+AGG | - | chr5_2:25495798-25495817 | Msa0765010:intron | 25.0% |
| GGGATATATATAGTGTAGAA+AGG | + | chr5_2:25495155-25495174 | None:intergenic | 30.0% | |
| !! | TGTTAATTTGTTGGGATGAT+TGG | + | chr5_2:25495187-25495206 | None:intergenic | 30.0% |
| TCTACTCATTAAGAAAGGAA+AGG | - | chr5_2:25495803-25495822 | Msa0765010:intron | 30.0% | |
| ! | TCATTCTCCTTTGATTTCAA+GGG | - | chr5_2:25495936-25495955 | Msa0765010:CDS | 30.0% |
| CACTCAAAGGATACAAATAT+AGG | - | chr5_2:25496000-25496019 | Msa0765010:five_prime_UTR | 30.0% | |
| GGGATATATATAGTGTAGAA+AGG | + | chr5_2:25495155-25495174 | None:intergenic | 30.0% | |
| !! | TGTTAATTTGTTGGGATGAT+TGG | + | chr5_2:25495187-25495206 | None:intergenic | 30.0% |
| TCTACTCATTAAGAAAGGAA+AGG | - | chr5_2:25495803-25495822 | Msa0765010:intron | 30.0% | |
| ! | TCATTCTCCTTTGATTTCAA+GGG | - | chr5_2:25495936-25495955 | Msa0765010:CDS | 30.0% |
| CACTCAAAGGATACAAATAT+AGG | - | chr5_2:25496000-25496019 | Msa0765010:five_prime_UTR | 30.0% | |
| TTGTTGGGATGATTGGAAAT+TGG | + | chr5_2:25495180-25495199 | None:intergenic | 35.0% | |
| TTCTTAACTAGCTAGAGTCT+TGG | - | chr5_2:25495431-25495450 | Msa0765010:CDS | 35.0% | |
| GCAGCAAAATCTTTCAAAAC+TGG | + | chr5_2:25495552-25495571 | None:intergenic | 35.0% | |
| ! | GCTTGATGTTGATGAGTTAT+TGG | - | chr5_2:25495599-25495618 | Msa0765010:intron | 35.0% |
| CCTGTTGCCAATTATATTGT+GGG | + | chr5_2:25495743-25495762 | None:intergenic | 35.0% | |
| CCACAATATAATTGGCAACA+GGG | - | chr5_2:25495741-25495760 | Msa0765010:CDS | 35.0% | |
| ! | AGGAAAGGTTGTTGATAAAG+TGG | - | chr5_2:25495818-25495837 | Msa0765010:intron | 35.0% |
| ! | AAAGGTTGTTGATAAAGTGG+TGG | - | chr5_2:25495821-25495840 | Msa0765010:intron | 35.0% |
| ! | AAGGTTGTTGATAAAGTGGT+GGG | - | chr5_2:25495822-25495841 | Msa0765010:intron | 35.0% |
| ! | CTCATTCTCCTTTGATTTCA+AGG | - | chr5_2:25495935-25495954 | Msa0765010:CDS | 35.0% |
| TGTAGATCCCTTGAAATCAA+AGG | + | chr5_2:25495946-25495965 | None:intergenic | 35.0% | |
| AAGATCAGGATGCAATAAGT+TGG | - | chr5_2:25495965-25495984 | Msa0765010:exon | 35.0% | |
| GTGTCATCAATTTCACTCAA+AGG | - | chr5_2:25495987-25496006 | Msa0765010:five_prime_UTR | 35.0% | |
| TTGTTGGGATGATTGGAAAT+TGG | + | chr5_2:25495180-25495199 | None:intergenic | 35.0% | |
| TTCTTAACTAGCTAGAGTCT+TGG | - | chr5_2:25495431-25495450 | Msa0765010:CDS | 35.0% | |
| GCAGCAAAATCTTTCAAAAC+TGG | + | chr5_2:25495552-25495571 | None:intergenic | 35.0% | |
| ! | GCTTGATGTTGATGAGTTAT+TGG | - | chr5_2:25495599-25495618 | Msa0765010:intron | 35.0% |
| CCTGTTGCCAATTATATTGT+GGG | + | chr5_2:25495743-25495762 | None:intergenic | 35.0% | |
| CCACAATATAATTGGCAACA+GGG | - | chr5_2:25495741-25495760 | Msa0765010:CDS | 35.0% | |
| ! | AGGAAAGGTTGTTGATAAAG+TGG | - | chr5_2:25495818-25495837 | Msa0765010:intron | 35.0% |
| ! | AAAGGTTGTTGATAAAGTGG+TGG | - | chr5_2:25495821-25495840 | Msa0765010:intron | 35.0% |
| ! | AAGGTTGTTGATAAAGTGGT+GGG | - | chr5_2:25495822-25495841 | Msa0765010:intron | 35.0% |
| ! | CTCATTCTCCTTTGATTTCA+AGG | - | chr5_2:25495935-25495954 | Msa0765010:CDS | 35.0% |
| TGTAGATCCCTTGAAATCAA+AGG | + | chr5_2:25495946-25495965 | None:intergenic | 35.0% | |
| AAGATCAGGATGCAATAAGT+TGG | - | chr5_2:25495965-25495984 | Msa0765010:exon | 35.0% | |
| GTGTCATCAATTTCACTCAA+AGG | - | chr5_2:25495987-25496006 | Msa0765010:five_prime_UTR | 35.0% | |
| GGGATGATTGGAAATTGGTT+GGG | + | chr5_2:25495175-25495194 | None:intergenic | 40.0% | |
| TGGGATGATTGGAAATTGGT+TGG | + | chr5_2:25495176-25495195 | None:intergenic | 40.0% | |
| GGAATGGAATGTAAGGACAT+GGG | + | chr5_2:25495341-25495360 | None:intergenic | 40.0% | |
| TGGAATGGAATGTAAGGACA+TGG | + | chr5_2:25495342-25495361 | None:intergenic | 40.0% | |
| TAGCAGTGGAATGGAATGTA+AGG | + | chr5_2:25495348-25495367 | None:intergenic | 40.0% | |
| CATTCCATTCCACTGCTAAA+TGG | - | chr5_2:25495350-25495369 | Msa0765010:three_prime_UTR | 40.0% | |
| CATTCCATTTAGCAGTGGAA+TGG | + | chr5_2:25495357-25495376 | None:intergenic | 40.0% | |
| ATGAGCATTCCATTTAGCAG+TGG | + | chr5_2:25495362-25495381 | None:intergenic | 40.0% | |
| GATTTCACAGCTAAATGGTG+TGG | - | chr5_2:25495507-25495526 | Msa0765010:intron | 40.0% | |
| ACAAATCAGTTCTCAAGTGC+TGG | + | chr5_2:25495716-25495735 | None:intergenic | 40.0% | |
| CCCACAATATAATTGGCAAC+AGG | - | chr5_2:25495740-25495759 | Msa0765010:CDS | 40.0% | |
| CCCTGTTGCCAATTATATTG+TGG | + | chr5_2:25495744-25495763 | None:intergenic | 40.0% | |
| CAAGAAAGGAGGAACTACAA+AGG | - | chr5_2:25495847-25495866 | Msa0765010:intron | 40.0% | |
| TTCAAGGGATCTACAAGATC+AGG | - | chr5_2:25495951-25495970 | Msa0765010:CDS | 40.0% | |
| GGGATGATTGGAAATTGGTT+GGG | + | chr5_2:25495175-25495194 | None:intergenic | 40.0% | |
| TGGGATGATTGGAAATTGGT+TGG | + | chr5_2:25495176-25495195 | None:intergenic | 40.0% | |
| GGAATGGAATGTAAGGACAT+GGG | + | chr5_2:25495341-25495360 | None:intergenic | 40.0% | |
| TGGAATGGAATGTAAGGACA+TGG | + | chr5_2:25495342-25495361 | None:intergenic | 40.0% | |
| TAGCAGTGGAATGGAATGTA+AGG | + | chr5_2:25495348-25495367 | None:intergenic | 40.0% | |
| CATTCCATTCCACTGCTAAA+TGG | - | chr5_2:25495350-25495369 | Msa0765010:three_prime_UTR | 40.0% | |
| CATTCCATTTAGCAGTGGAA+TGG | + | chr5_2:25495357-25495376 | None:intergenic | 40.0% | |
| ATGAGCATTCCATTTAGCAG+TGG | + | chr5_2:25495362-25495381 | None:intergenic | 40.0% | |
| GATTTCACAGCTAAATGGTG+TGG | - | chr5_2:25495507-25495526 | Msa0765010:intron | 40.0% | |
| ACAAATCAGTTCTCAAGTGC+TGG | + | chr5_2:25495716-25495735 | None:intergenic | 40.0% | |
| CCCACAATATAATTGGCAAC+AGG | - | chr5_2:25495740-25495759 | Msa0765010:CDS | 40.0% | |
| CCCTGTTGCCAATTATATTG+TGG | + | chr5_2:25495744-25495763 | None:intergenic | 40.0% | |
| CAAGAAAGGAGGAACTACAA+AGG | - | chr5_2:25495847-25495866 | Msa0765010:intron | 40.0% | |
| TTCAAGGGATCTACAAGATC+AGG | - | chr5_2:25495951-25495970 | Msa0765010:CDS | 40.0% | |
| ACTGGATCCATAACTCTGCA+AGG | + | chr5_2:25495534-25495553 | None:intergenic | 45.0% | |
| AAGTTGGCAATGAATGCACC+TGG | + | chr5_2:25495782-25495801 | None:intergenic | 45.0% | |
| ! | TAAAGTGGTGGGAGCAAGAA+AGG | - | chr5_2:25495833-25495852 | Msa0765010:intron | 45.0% |
| ACTGGATCCATAACTCTGCA+AGG | + | chr5_2:25495534-25495553 | None:intergenic | 45.0% | |
| AAGTTGGCAATGAATGCACC+TGG | + | chr5_2:25495782-25495801 | None:intergenic | 45.0% | |
| ! | TAAAGTGGTGGGAGCAAGAA+AGG | - | chr5_2:25495833-25495852 | Msa0765010:intron | 45.0% |
| !! | TCAATAAAATAATATATAAT+TGG | - | chr5_2:25496092-25496111 | Msa0765010:five_prime_UTR | 5.0% |
| !! | TCAATAAAATAATATATAAT+TGG | - | chr5_2:25496092-25496111 | Msa0765010:five_prime_UTR | 5.0% |
| GTGTGGACCTTGCAGAGTTA+TGG | - | chr5_2:25495524-25495543 | Msa0765010:intron | 50.0% | |
| TGGCAATGAATGCACCTGGA+AGG | + | chr5_2:25495778-25495797 | None:intergenic | 50.0% | |
| GTGTGGACCTTGCAGAGTTA+TGG | - | chr5_2:25495524-25495543 | Msa0765010:intron | 50.0% | |
| TGGCAATGAATGCACCTGGA+AGG | + | chr5_2:25495778-25495797 | None:intergenic | 50.0% | |
| !! | GGGAGTGTCTCAAACCTTCC+AGG | - | chr5_2:25495761-25495780 | Msa0765010:intron | 55.0% |
| ! | AGTGGTGGGAGCAAGAAAGG+AGG | - | chr5_2:25495836-25495855 | Msa0765010:intron | 55.0% |
| !! | GGGAGTGTCTCAAACCTTCC+AGG | - | chr5_2:25495761-25495780 | Msa0765010:intron | 55.0% |
| ! | AGTGGTGGGAGCAAGAAAGG+AGG | - | chr5_2:25495836-25495855 | Msa0765010:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 25495152 | 25496117 | 25495152 | ID=Msa0765010;Name=Msa0765010 |
| chr5_2 | mRNA | 25495152 | 25496117 | 25495152 | ID=Msa0765010-mRNA-1;Parent=Msa0765010;Name=Msa0765010-mRNA-1;_AED=0.35;_eAED=0.35;_QI=134|1|1|1|1|1|3|224|126 |
| chr5_2 | exon | 25495152 | 25495507 | 25495152 | ID=Msa0765010-mRNA-1:exon:10296;Parent=Msa0765010-mRNA-1 |
| chr5_2 | exon | 25495649 | 25495771 | 25495649 | ID=Msa0765010-mRNA-1:exon:10295;Parent=Msa0765010-mRNA-1 |
| chr5_2 | exon | 25495858 | 25496117 | 25495858 | ID=Msa0765010-mRNA-1:exon:10294;Parent=Msa0765010-mRNA-1 |
| chr5_2 | five_prime_UTR | 25495984 | 25496117 | 25495984 | ID=Msa0765010-mRNA-1:five_prime_utr;Parent=Msa0765010-mRNA-1 |
| chr5_2 | CDS | 25495858 | 25495983 | 25495858 | ID=Msa0765010-mRNA-1:cds;Parent=Msa0765010-mRNA-1 |
| chr5_2 | CDS | 25495649 | 25495771 | 25495649 | ID=Msa0765010-mRNA-1:cds;Parent=Msa0765010-mRNA-1 |
| chr5_2 | CDS | 25495376 | 25495507 | 25495376 | ID=Msa0765010-mRNA-1:cds;Parent=Msa0765010-mRNA-1 |
| chr5_2 | three_prime_UTR | 25495152 | 25495375 | 25495152 | ID=Msa0765010-mRNA-1:three_prime_utr;Parent=Msa0765010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
