Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044100 | XP_013470277.1 | 92.230 | 296 | 23 | 0 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044100 | A0A072W228 | 92.230 | 296 | 23 | 0 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044100 | Msa0095540 | 0.817715 | 2.856736e-52 | -8.615850e-47 |
| Msa0044100 | Msa0141100 | 0.848536 | 5.756669e-60 | -8.615850e-47 |
| Msa0044100 | Msa0164660 | 0.802388 | 5.743832e-49 | -8.615850e-47 |
| Msa0044100 | Msa0183750 | 0.962107 | 1.744793e-120 | -8.615850e-47 |
| Msa0044100 | Msa0185480 | 0.811045 | 8.520270e-51 | -8.615850e-47 |
| Msa0044100 | Msa0185640 | -0.813385 | 2.628809e-51 | -8.615850e-47 |
| Msa0044100 | Msa0191040 | 0.820679 | 6.037267e-53 | -8.615850e-47 |
| Msa0044100 | Msa0220300 | 0.811130 | 8.166854e-51 | -8.615850e-47 |
| Msa0044100 | Msa0233340 | 0.820724 | 5.897003e-53 | -8.615850e-47 |
| Msa0044100 | Msa0251240 | 0.819996 | 8.661799e-53 | -8.615850e-47 |
| Msa0044100 | Msa0311690 | 0.810921 | 9.060955e-51 | -8.615850e-47 |
| Msa0044100 | Msa0342340 | -0.806517 | 7.915637e-50 | -8.615850e-47 |
| Msa0044100 | Msa0371540 | 0.805179 | 1.512334e-49 | -8.615850e-47 |
| Msa0044100 | Msa0374850 | 0.840464 | 8.562574e-58 | -8.615850e-47 |
| Msa0044100 | Msa0375090 | 0.838703 | 2.456686e-57 | -8.615850e-47 |
| Msa0044100 | Msa0385670 | 0.811763 | 5.949256e-51 | -8.615850e-47 |
| Msa0044100 | Msa0418000 | 0.811149 | 8.087602e-51 | -8.615850e-47 |
| Msa0044100 | Msa0435670 | 0.802908 | 4.487257e-49 | -8.615850e-47 |
| Msa0044100 | Msa0466060 | 0.813240 | 2.828581e-51 | -8.615850e-47 |
| Msa0044100 | Msa0470340 | 0.842646 | 2.277075e-58 | -8.615850e-47 |
| Msa0044100 | Msa0470860 | 0.861938 | 7.214395e-64 | -8.615850e-47 |
| Msa0044100 | Msa0479680 | 0.800540 | 1.373890e-48 | -8.615850e-47 |
| Msa0044100 | Msa0479700 | 0.800097 | 1.691003e-48 | -8.615850e-47 |
| Msa0044100 | Msa0480950 | 0.812166 | 4.861794e-51 | -8.615850e-47 |
| Msa0044100 | Msa0517340 | 0.809516 | 1.820787e-50 | -8.615850e-47 |
| Msa0044100 | Msa0531430 | 0.869401 | 3.183906e-66 | -8.615850e-47 |
| Msa0044100 | Msa0534570 | 0.822076 | 2.874608e-53 | -8.615850e-47 |
| Msa0044100 | Msa0534590 | 0.842996 | 1.838437e-58 | -8.615850e-47 |
| Msa0044100 | Msa0557680 | 0.815539 | 8.777013e-52 | -8.615850e-47 |
| Msa0044100 | Msa0565600 | 0.873027 | 2.020183e-67 | -8.615850e-47 |
| Msa0044100 | Msa0590800 | 0.832941 | 7.091264e-56 | -8.615850e-47 |
| Msa0044100 | Msa0611380 | 0.859371 | 4.331841e-63 | -8.615850e-47 |
| Msa0044100 | Msa0618180 | 0.834724 | 2.540717e-56 | -8.615850e-47 |
| Msa0044100 | Msa0618220 | 0.824672 | 7.111167e-54 | -8.615850e-47 |
| Msa0044100 | Msa0619990 | 0.805492 | 1.300770e-49 | -8.615850e-47 |
| Msa0044100 | Msa0628640 | 0.872556 | 2.905292e-67 | -8.615850e-47 |
| Msa0044100 | Msa0631120 | 0.844513 | 7.215050e-59 | -8.615850e-47 |
| Msa0044100 | Msa0653020 | 0.821343 | 4.247512e-53 | -8.615850e-47 |
| Msa0044100 | Msa0666030 | 0.854998 | 8.472277e-62 | -8.615850e-47 |
| Msa0044100 | Msa0669340 | 0.853471 | 2.338442e-61 | -8.615850e-47 |
| Msa0044100 | Msa0701770 | 0.813664 | 2.282221e-51 | -8.615850e-47 |
| Msa0044100 | Msa0701970 | 0.841756 | 3.917987e-58 | -8.615850e-47 |
| Msa0044100 | Msa0716450 | 0.870212 | 1.729997e-66 | -8.615850e-47 |
| Msa0044100 | Msa0717260 | 0.846744 | 1.791569e-59 | -8.615850e-47 |
| Msa0044100 | Msa0758320 | 0.833675 | 4.654407e-56 | -8.615850e-47 |
| Msa0044100 | Msa0773610 | 0.806336 | 8.643947e-50 | -8.615850e-47 |
| Msa0044100 | Msa0775440 | 0.810487 | 1.124756e-50 | -8.615850e-47 |
| Msa0044100 | Msa0799030 | 0.861943 | 7.192521e-64 | -8.615850e-47 |
| Msa0044100 | Msa0799700 | 0.811733 | 6.040023e-51 | -8.615850e-47 |
| Msa0044100 | Msa0812820 | 0.824676 | 7.092823e-54 | -8.615850e-47 |
| Msa0044100 | Msa0837440 | 0.834442 | 2.990897e-56 | -8.615850e-47 |
| Msa0044100 | Msa0837980 | 0.844200 | 8.761103e-59 | -8.615850e-47 |
| Msa0044100 | Msa0853320 | 0.817244 | 3.646351e-52 | -8.615850e-47 |
| Msa0044100 | Msa0944770 | 0.806727 | 7.149691e-50 | -8.615850e-47 |
| Msa0044100 | Msa0981010 | 0.830919 | 2.238913e-55 | -8.615850e-47 |
| Msa0044100 | Msa1000020 | 0.800643 | 1.309131e-48 | -8.615850e-47 |
| Msa0044100 | Msa1001770 | 0.807931 | 3.971073e-50 | -8.615850e-47 |
| Msa0044100 | Msa1002620 | 0.844589 | 6.883926e-59 | -8.615850e-47 |
| Msa0044100 | Msa1113850 | 0.800086 | 1.699654e-48 | -8.615850e-47 |
| Msa0044100 | Msa1190120 | 0.845369 | 4.239504e-59 | -8.615850e-47 |
| Msa0044100 | Msa1203000 | 0.826708 | 2.339468e-54 | -8.615850e-47 |
| Msa0044100 | Msa1205010 | -0.802110 | 6.552549e-49 | -8.615850e-47 |
| Msa0044100 | Msa1211550 | 0.828304 | 9.684968e-55 | -8.615850e-47 |
| Msa0044100 | Msa1219260 | 0.833015 | 6.796444e-56 | -8.615850e-47 |
| Msa0044100 | Msa1227950 | 0.819125 | 1.368920e-52 | -8.615850e-47 |
| Msa0044100 | Msa1227970 | 0.823115 | 1.647657e-53 | -8.615850e-47 |
| Msa0044100 | Msa1255280 | 0.811700 | 6.141848e-51 | -8.615850e-47 |
| Msa0044100 | Msa1256540 | -0.805252 | 1.460040e-49 | -8.615850e-47 |
| Msa0044100 | Msa1258050 | 0.802759 | 4.817894e-49 | -8.615850e-47 |
| Msa0044100 | Msa1266960 | 0.843111 | 1.712917e-58 | -8.615850e-47 |
| Msa0044100 | Msa1296960 | -0.821504 | 3.898758e-53 | -8.615850e-47 |
| Msa0044100 | Msa1308130 | 0.816035 | 6.804436e-52 | -8.615850e-47 |
| Msa0044100 | Msa1339940 | 0.832610 | 8.568896e-56 | -8.615850e-47 |
| Msa0044100 | Msa1343820 | 0.812686 | 3.742074e-51 | -8.615850e-47 |
| Msa0044100 | Msa1369700 | 0.927848 | 6.623246e-92 | -8.615850e-47 |
| Msa0044100 | Msa1381140 | 0.806308 | 8.762590e-50 | -8.615850e-47 |
| Msa0044100 | Msa1397250 | 0.806370 | 8.501560e-50 | -8.615850e-47 |
| Msa0044100 | Msa1399560 | 0.838541 | 2.704445e-57 | -8.615850e-47 |
| Msa0044100 | Msa1423450 | 0.810219 | 1.285451e-50 | -8.615850e-47 |
| Msa0044100 | Msa1437190 | 0.978744 | 1.799204e-146 | -8.615850e-47 |
| Msa0044100 | Msa1443840 | 0.847282 | 1.276495e-59 | -8.615850e-47 |
| Msa0044100 | Msa1452060 | 0.833349 | 5.612154e-56 | -8.615850e-47 |
| Msa0044100 | Msa1460380 | 0.941034 | 8.381436e-101 | -8.615850e-47 |
| Msa0044100 | Msa1460890 | 0.818064 | 2.381407e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044100 | MtrunA17_Chr1g0210721 | 92.230 | 296 | 23 | 0 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Msa0044100 | MtrunA17_Chr1g0210731 | 66.234 | 308 | 90 | 5 | 4 | 300 | 1 | 305 | 3.11e-138 | 392 |
| Msa0044100 | MtrunA17_Chr2g0287431 | 45.608 | 296 | 149 | 3 | 1 | 288 | 1 | 292 | 6.91e-82 | 250 |
| Msa0044100 | MtrunA17_Chr4g0033971 | 29.183 | 257 | 159 | 6 | 6 | 248 | 6 | 253 | 1.61e-29 | 114 |
| Msa0044100 | MtrunA17_Chr5g0409571 | 26.545 | 275 | 185 | 6 | 1 | 266 | 1 | 267 | 2.31e-21 | 91.3 |
| Msa0044100 | MtrunA17_Chr8g0369411 | 25.940 | 266 | 178 | 7 | 6 | 261 | 6 | 262 | 3.39e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044100 | AT1G55230.1 | 47.987 | 298 | 137 | 7 | 1 | 287 | 1 | 291 | 1.25e-91 | 274 |
| Msa0044100 | AT1G55240.1 | 45.517 | 290 | 147 | 4 | 6 | 287 | 6 | 292 | 2.25e-85 | 259 |
| Msa0044100 | AT5G19870.1 | 42.857 | 280 | 148 | 2 | 1 | 272 | 1 | 276 | 5.34e-79 | 241 |
| Msa0044100 | AT1G49470.1 | 28.904 | 301 | 184 | 8 | 6 | 287 | 6 | 295 | 7.07e-26 | 104 |
| Msa0044100 | AT1G32127.2 | 28.571 | 245 | 158 | 5 | 1 | 236 | 1 | 237 | 3.64e-20 | 88.2 |
| Msa0044100 | AT1G32127.1 | 28.571 | 245 | 158 | 5 | 1 | 236 | 1 | 237 | 3.64e-20 | 88.2 |
Find 59 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTATGGCTATAATTTA+TGG | 0.111898 | 1_1:+75595670 | Msa0044100:CDS |
| CTCTAAGTATCTACTTATTT+TGG | 0.153608 | 1_1:-75595044 | None:intergenic |
| CCAACACTTCATTACCCTTT+TGG | 0.220978 | 1_1:+75595014 | Msa0044100:CDS |
| CAATTCAGCTGGTTCTTTAT+TGG | 0.239215 | 1_1:+75595619 | Msa0044100:CDS |
| GGTTTAGTGCTTTCTATATC+TGG | 0.242800 | 1_1:+75595493 | Msa0044100:CDS |
| TCAACCCAAAGGTTGCTTCT+TGG | 0.301483 | 1_1:+75595519 | Msa0044100:CDS |
| GGCTGAGAAGATTGCGCAAC+TGG | 0.317645 | 1_1:-75595083 | None:intergenic |
| AGGTTTGTTCATTATGTTCA+TGG | 0.326708 | 1_1:+75595471 | Msa0044100:CDS |
| TGTGTTCAACTTGGTGGATA+TGG | 0.336618 | 1_1:-75595150 | None:intergenic |
| GTTACAACCCTTATGGGAAT+TGG | 0.339254 | 1_1:+75595394 | Msa0044100:CDS |
| AGTGTCTTTCTACTTGATTA+TGG | 0.354291 | 1_1:+75595657 | Msa0044100:CDS |
| TTGCTTGCAGCTATAGCATT+TGG | 0.358644 | 1_1:+75595274 | Msa0044100:CDS |
| TTTGTTTCTATCAAGAATTA+TGG | 0.364986 | 1_1:-75595212 | None:intergenic |
| ATATTCCAAGAAGCAACCTT+TGG | 0.390404 | 1_1:-75595524 | None:intergenic |
| TGGAAAACCAATTCCCATAA+GGG | 0.397131 | 1_1:-75595401 | None:intergenic |
| TTGGAAAACCAATTCCCATA+AGG | 0.421443 | 1_1:-75595402 | None:intergenic |
| AGAAGTCACATGGGGATAGA+AGG | 0.425426 | 1_1:+75595328 | Msa0044100:CDS |
| CCAGATGATTTCTACTAGAA+TGG | 0.432826 | 1_1:+75595780 | Msa0044100:CDS |
| TGGTGAATCTTCAATTCAGC+TGG | 0.442803 | 1_1:+75595608 | Msa0044100:CDS |
| GTGGATATGGTTGGTAGGAA+TGG | 0.447015 | 1_1:-75595137 | None:intergenic |
| CCATTCTAGTAGAAATCATC+TGG | 0.450188 | 1_1:-75595780 | None:intergenic |
| GGTTTGTTCATTATGTTCAT+GGG | 0.458171 | 1_1:+75595472 | Msa0044100:CDS |
| TATTCCAAGAAGCAACCTTT+GGG | 0.461299 | 1_1:-75595523 | None:intergenic |
| TATGCATCGTGCTGTTTCAT+TGG | 0.468772 | 1_1:+75595588 | Msa0044100:CDS |
| AAGGAGATCAACTTATGGTT+AGG | 0.470541 | 1_1:+75595548 | Msa0044100:CDS |
| GGTTAGGTGCAATGATGAAA+AGG | 0.480561 | 1_1:+75595564 | Msa0044100:CDS |
| AGGCACTATGATTGCATTGG+AGG | 0.487729 | 1_1:+75594907 | None:intergenic |
| GGTTGCTTCTTGGAATATGA+AGG | 0.488311 | 1_1:+75595529 | Msa0044100:CDS |
| GGAGTTTGAGGTAGTTGAAG+AGG | 0.502910 | 1_1:-75594976 | None:intergenic |
| ATATGAAGGAGATCAACTTA+TGG | 0.508152 | 1_1:+75595543 | Msa0044100:CDS |
| AACAAACAAAGTGGAGTTTG+AGG | 0.514586 | 1_1:-75594988 | None:intergenic |
| TGAACATAATGAACAAACCT+TGG | 0.523714 | 1_1:-75595468 | None:intergenic |
| TGTGACTTCTTGAATGAAGA+TGG | 0.525692 | 1_1:-75595315 | None:intergenic |
| ATCTTCGAAGCTTCTAGTAA+TGG | 0.527933 | 1_1:+75595112 | Msa0044100:CDS |
| CCAAAAGGGTAATGAAGTGT+TGG | 0.529229 | 1_1:-75595014 | None:intergenic |
| TGGAAGTGTGTTCAACTTGG+TGG | 0.532303 | 1_1:-75595156 | None:intergenic |
| TCTGTTAGCATGATCTTCCA+AGG | 0.532759 | 1_1:+75595451 | Msa0044100:CDS |
| GGAGTGCGATTCACTGATGA+AGG | 0.536386 | 1_1:+75595702 | Msa0044100:CDS |
| TCTAGGCACTATGATTGCAT+TGG | 0.541099 | 1_1:+75594904 | None:intergenic |
| TTGGAGGGACATATATGCAT+GGG | 0.547892 | 1_1:+75594923 | Msa0044100:CDS |
| GGCACTATGATTGCATTGGA+GGG | 0.559391 | 1_1:+75594908 | None:intergenic |
| CTTAGAGCTTTATTTCATTG+TGG | 0.561652 | 1_1:+75595060 | Msa0044100:CDS |
| TTCAACTTGGTGGATATGGT+TGG | 0.563681 | 1_1:-75595146 | None:intergenic |
| TATGAAGAAAGACACAGTAA+TGG | 0.570471 | 1_1:-75595176 | None:intergenic |
| AAGGAGGAACAGTACGGTGA+AGG | 0.576386 | 1_1:+75595721 | Msa0044100:CDS |
| ACTTGGTGGATATGGTTGGT+AGG | 0.580887 | 1_1:-75595142 | None:intergenic |
| TCTATCAAGAATTATGGCAA+AGG | 0.582723 | 1_1:-75595206 | None:intergenic |
| GAACAGTACGGTGAAGGCGA+TGG | 0.598192 | 1_1:+75595727 | Msa0044100:CDS |
| ATATCTGGTTATCAACCCAA+AGG | 0.602519 | 1_1:+75595508 | Msa0044100:CDS |
| TCTTCATTCAAGAAGTCACA+TGG | 0.616300 | 1_1:+75595318 | Msa0044100:CDS |
| ATTGGAGGGACATATATGCA+TGG | 0.620076 | 1_1:+75594922 | Msa0044100:CDS |
| TAATGGAAGTGTGTTCAACT+TGG | 0.624797 | 1_1:-75595159 | None:intergenic |
| TGTTGGAAGAACAAACAAAG+TGG | 0.643408 | 1_1:-75594997 | None:intergenic |
| CTTCATTCAAGAAGTCACAT+GGG | 0.655694 | 1_1:+75595319 | Msa0044100:CDS |
| TGGAGGGACATATATGCATG+GGG | 0.665069 | 1_1:+75594924 | Msa0044100:CDS |
| GTGCGATTCACTGATGAAGG+AGG | 0.666959 | 1_1:+75595705 | Msa0044100:CDS |
| AGAAGCTTCGAAGATTTCTG+CGG | 0.668279 | 1_1:-75595104 | None:intergenic |
| CTGATGAAGGAGGAACAGTA+CGG | 0.675878 | 1_1:+75595715 | Msa0044100:CDS |
| TTCATTCAAGAAGTCACATG+GGG | 0.680400 | 1_1:+75595320 | Msa0044100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTCTATCAAGAATTA+TGG | - | chr1_1:75595215-75595234 | None:intergenic | 20.0% |
| !! | TTGATTATGGCTATAATTTA+TGG | + | chr1_1:75595670-75595689 | Msa0044100:CDS | 20.0% |
| !! | TATAATTTATGGTGAAAAAG+TGG | + | chr1_1:75595681-75595700 | Msa0044100:CDS | 20.0% |
| !!! | TTTGTTTCTATCAAGAATTA+TGG | - | chr1_1:75595215-75595234 | None:intergenic | 20.0% |
| !! | TTGATTATGGCTATAATTTA+TGG | + | chr1_1:75595670-75595689 | Msa0044100:CDS | 20.0% |
| !! | TATAATTTATGGTGAAAAAG+TGG | + | chr1_1:75595681-75595700 | Msa0044100:CDS | 20.0% |
| !!! | AAGTATCTACTTATTTTGGT+GGG | - | chr1_1:75595043-75595062 | None:intergenic | 25.0% |
| !!! | TAAGTATCTACTTATTTTGG+TGG | - | chr1_1:75595044-75595063 | None:intergenic | 25.0% |
| !! | CTCTAAGTATCTACTTATTT+TGG | - | chr1_1:75595047-75595066 | None:intergenic | 25.0% |
| ! | AAACATACCAAAAAACTCAT+TGG | - | chr1_1:75595424-75595443 | None:intergenic | 25.0% |
| !!! | AAGTATCTACTTATTTTGGT+GGG | - | chr1_1:75595043-75595062 | None:intergenic | 25.0% |
| !!! | TAAGTATCTACTTATTTTGG+TGG | - | chr1_1:75595044-75595063 | None:intergenic | 25.0% |
| !! | CTCTAAGTATCTACTTATTT+TGG | - | chr1_1:75595047-75595066 | None:intergenic | 25.0% |
| ! | AAACATACCAAAAAACTCAT+TGG | - | chr1_1:75595424-75595443 | None:intergenic | 25.0% |
| ! | TTTTCTTTGTACTTGGTTTC+TGG | + | chr1_1:75594951-75594970 | Msa0044100:CDS | 30.0% |
| !! | CTTAGAGCTTTATTTCATTG+TGG | + | chr1_1:75595060-75595079 | Msa0044100:CDS | 30.0% |
| TATGAAGAAAGACACAGTAA+TGG | - | chr1_1:75595179-75595198 | None:intergenic | 30.0% | |
| TCTATCAAGAATTATGGCAA+AGG | - | chr1_1:75595209-75595228 | None:intergenic | 30.0% | |
| !!! | TTGCAAGTTTTGATTCTGAT+AGG | + | chr1_1:75595367-75595386 | Msa0044100:CDS | 30.0% |
| ! | TGGTTTTCCAATGAGTTTTT+TGG | + | chr1_1:75595414-75595433 | Msa0044100:CDS | 30.0% |
| TGAACATAATGAACAAACCT+TGG | - | chr1_1:75595471-75595490 | None:intergenic | 30.0% | |
| ! | AGGTTTGTTCATTATGTTCA+TGG | + | chr1_1:75595471-75595490 | Msa0044100:CDS | 30.0% |
| ! | GGTTTGTTCATTATGTTCAT+GGG | + | chr1_1:75595472-75595491 | Msa0044100:CDS | 30.0% |
| ATATGAAGGAGATCAACTTA+TGG | + | chr1_1:75595543-75595562 | Msa0044100:CDS | 30.0% | |
| AGTGTCTTTCTACTTGATTA+TGG | + | chr1_1:75595657-75595676 | Msa0044100:CDS | 30.0% | |
| ! | TTTTCTTTGTACTTGGTTTC+TGG | + | chr1_1:75594951-75594970 | Msa0044100:CDS | 30.0% |
| !! | CTTAGAGCTTTATTTCATTG+TGG | + | chr1_1:75595060-75595079 | Msa0044100:CDS | 30.0% |
| TATGAAGAAAGACACAGTAA+TGG | - | chr1_1:75595179-75595198 | None:intergenic | 30.0% | |
| TCTATCAAGAATTATGGCAA+AGG | - | chr1_1:75595209-75595228 | None:intergenic | 30.0% | |
| !!! | TTGCAAGTTTTGATTCTGAT+AGG | + | chr1_1:75595367-75595386 | Msa0044100:CDS | 30.0% |
| ! | TGGTTTTCCAATGAGTTTTT+TGG | + | chr1_1:75595414-75595433 | Msa0044100:CDS | 30.0% |
| TGAACATAATGAACAAACCT+TGG | - | chr1_1:75595471-75595490 | None:intergenic | 30.0% | |
| ! | AGGTTTGTTCATTATGTTCA+TGG | + | chr1_1:75595471-75595490 | Msa0044100:CDS | 30.0% |
| ! | GGTTTGTTCATTATGTTCAT+GGG | + | chr1_1:75595472-75595491 | Msa0044100:CDS | 30.0% |
| ATATGAAGGAGATCAACTTA+TGG | + | chr1_1:75595543-75595562 | Msa0044100:CDS | 30.0% | |
| AGTGTCTTTCTACTTGATTA+TGG | + | chr1_1:75595657-75595676 | Msa0044100:CDS | 30.0% | |
| !! | GGGTTTGTTTTCTTTGTACT+TGG | + | chr1_1:75594944-75594963 | Msa0044100:CDS | 35.0% |
| AACAAACAAAGTGGAGTTTG+AGG | - | chr1_1:75594991-75595010 | None:intergenic | 35.0% | |
| TGTTGGAAGAACAAACAAAG+TGG | - | chr1_1:75595000-75595019 | None:intergenic | 35.0% | |
| !! | ATTTTGGTGGGAAACCAAAA+GGG | - | chr1_1:75595031-75595050 | None:intergenic | 35.0% |
| !!! | TATTTTGGTGGGAAACCAAA+AGG | - | chr1_1:75595032-75595051 | None:intergenic | 35.0% |
| ATCTTCGAAGCTTCTAGTAA+TGG | + | chr1_1:75595112-75595131 | Msa0044100:CDS | 35.0% | |
| ! | TAATGGAAGTGTGTTCAACT+TGG | - | chr1_1:75595162-75595181 | None:intergenic | 35.0% |
| TGTGACTTCTTGAATGAAGA+TGG | - | chr1_1:75595318-75595337 | None:intergenic | 35.0% | |
| TCTTCATTCAAGAAGTCACA+TGG | + | chr1_1:75595318-75595337 | Msa0044100:CDS | 35.0% | |
| CTTCATTCAAGAAGTCACAT+GGG | + | chr1_1:75595319-75595338 | Msa0044100:CDS | 35.0% | |
| TTCATTCAAGAAGTCACATG+GGG | + | chr1_1:75595320-75595339 | Msa0044100:CDS | 35.0% | |
| !!! | AGGTTTTGTTACAACCCTTA+TGG | + | chr1_1:75595387-75595406 | Msa0044100:CDS | 35.0% |
| !!! | GGTTTTGTTACAACCCTTAT+GGG | + | chr1_1:75595388-75595407 | Msa0044100:CDS | 35.0% |
| TGGAAAACCAATTCCCATAA+GGG | - | chr1_1:75595404-75595423 | None:intergenic | 35.0% | |
| TTGGAAAACCAATTCCCATA+AGG | - | chr1_1:75595405-75595424 | None:intergenic | 35.0% | |
| GGTTTAGTGCTTTCTATATC+TGG | + | chr1_1:75595493-75595512 | Msa0044100:CDS | 35.0% | |
| ATATCTGGTTATCAACCCAA+AGG | + | chr1_1:75595508-75595527 | Msa0044100:CDS | 35.0% | |
| TATTCCAAGAAGCAACCTTT+GGG | - | chr1_1:75595526-75595545 | None:intergenic | 35.0% | |
| ATATTCCAAGAAGCAACCTT+TGG | - | chr1_1:75595527-75595546 | None:intergenic | 35.0% | |
| AAGGAGATCAACTTATGGTT+AGG | + | chr1_1:75595548-75595567 | Msa0044100:CDS | 35.0% | |
| ! | CAATTCAGCTGGTTCTTTAT+TGG | + | chr1_1:75595619-75595638 | Msa0044100:CDS | 35.0% |
| CCATTCTAGTAGAAATCATC+TGG | - | chr1_1:75595783-75595802 | None:intergenic | 35.0% | |
| CCAGATGATTTCTACTAGAA+TGG | + | chr1_1:75595780-75595799 | Msa0044100:CDS | 35.0% | |
| !! | GGGTTTGTTTTCTTTGTACT+TGG | + | chr1_1:75594944-75594963 | Msa0044100:CDS | 35.0% |
| AACAAACAAAGTGGAGTTTG+AGG | - | chr1_1:75594991-75595010 | None:intergenic | 35.0% | |
| TGTTGGAAGAACAAACAAAG+TGG | - | chr1_1:75595000-75595019 | None:intergenic | 35.0% | |
| !! | ATTTTGGTGGGAAACCAAAA+GGG | - | chr1_1:75595031-75595050 | None:intergenic | 35.0% |
| !!! | TATTTTGGTGGGAAACCAAA+AGG | - | chr1_1:75595032-75595051 | None:intergenic | 35.0% |
| ATCTTCGAAGCTTCTAGTAA+TGG | + | chr1_1:75595112-75595131 | Msa0044100:CDS | 35.0% | |
| ! | TAATGGAAGTGTGTTCAACT+TGG | - | chr1_1:75595162-75595181 | None:intergenic | 35.0% |
| TGTGACTTCTTGAATGAAGA+TGG | - | chr1_1:75595318-75595337 | None:intergenic | 35.0% | |
| TCTTCATTCAAGAAGTCACA+TGG | + | chr1_1:75595318-75595337 | Msa0044100:CDS | 35.0% | |
| CTTCATTCAAGAAGTCACAT+GGG | + | chr1_1:75595319-75595338 | Msa0044100:CDS | 35.0% | |
| TTCATTCAAGAAGTCACATG+GGG | + | chr1_1:75595320-75595339 | Msa0044100:CDS | 35.0% | |
| !!! | AGGTTTTGTTACAACCCTTA+TGG | + | chr1_1:75595387-75595406 | Msa0044100:CDS | 35.0% |
| !!! | GGTTTTGTTACAACCCTTAT+GGG | + | chr1_1:75595388-75595407 | Msa0044100:CDS | 35.0% |
| TGGAAAACCAATTCCCATAA+GGG | - | chr1_1:75595404-75595423 | None:intergenic | 35.0% | |
| TTGGAAAACCAATTCCCATA+AGG | - | chr1_1:75595405-75595424 | None:intergenic | 35.0% | |
| GGTTTAGTGCTTTCTATATC+TGG | + | chr1_1:75595493-75595512 | Msa0044100:CDS | 35.0% | |
| ATATCTGGTTATCAACCCAA+AGG | + | chr1_1:75595508-75595527 | Msa0044100:CDS | 35.0% | |
| TATTCCAAGAAGCAACCTTT+GGG | - | chr1_1:75595526-75595545 | None:intergenic | 35.0% | |
| ATATTCCAAGAAGCAACCTT+TGG | - | chr1_1:75595527-75595546 | None:intergenic | 35.0% | |
| AAGGAGATCAACTTATGGTT+AGG | + | chr1_1:75595548-75595567 | Msa0044100:CDS | 35.0% | |
| ! | CAATTCAGCTGGTTCTTTAT+TGG | + | chr1_1:75595619-75595638 | Msa0044100:CDS | 35.0% |
| CCATTCTAGTAGAAATCATC+TGG | - | chr1_1:75595783-75595802 | None:intergenic | 35.0% | |
| CCAGATGATTTCTACTAGAA+TGG | + | chr1_1:75595780-75595799 | Msa0044100:CDS | 35.0% | |
| ATTGGAGGGACATATATGCA+TGG | + | chr1_1:75594922-75594941 | Msa0044100:CDS | 40.0% | |
| TTGGAGGGACATATATGCAT+GGG | + | chr1_1:75594923-75594942 | Msa0044100:CDS | 40.0% | |
| CCAAAAGGGTAATGAAGTGT+TGG | - | chr1_1:75595017-75595036 | None:intergenic | 40.0% | |
| ! | CCAACACTTCATTACCCTTT+TGG | + | chr1_1:75595014-75595033 | Msa0044100:CDS | 40.0% |
| AGAAGCTTCGAAGATTTCTG+CGG | - | chr1_1:75595107-75595126 | None:intergenic | 40.0% | |
| ! | TTCAACTTGGTGGATATGGT+TGG | - | chr1_1:75595149-75595168 | None:intergenic | 40.0% |
| ! | TGTGTTCAACTTGGTGGATA+TGG | - | chr1_1:75595153-75595172 | None:intergenic | 40.0% |
| TTGCTTGCAGCTATAGCATT+TGG | + | chr1_1:75595274-75595293 | Msa0044100:CDS | 40.0% | |
| GTTACAACCCTTATGGGAAT+TGG | + | chr1_1:75595394-75595413 | Msa0044100:CDS | 40.0% | |
| TCTGTTAGCATGATCTTCCA+AGG | + | chr1_1:75595451-75595470 | Msa0044100:CDS | 40.0% | |
| GGTTGCTTCTTGGAATATGA+AGG | + | chr1_1:75595529-75595548 | Msa0044100:CDS | 40.0% | |
| GGTTAGGTGCAATGATGAAA+AGG | + | chr1_1:75595564-75595583 | Msa0044100:CDS | 40.0% | |
| !! | TATGCATCGTGCTGTTTCAT+TGG | + | chr1_1:75595588-75595607 | Msa0044100:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | + | chr1_1:75595608-75595627 | Msa0044100:CDS | 40.0% | |
| ATTGGAGGGACATATATGCA+TGG | + | chr1_1:75594922-75594941 | Msa0044100:CDS | 40.0% | |
| TTGGAGGGACATATATGCAT+GGG | + | chr1_1:75594923-75594942 | Msa0044100:CDS | 40.0% | |
| CCAAAAGGGTAATGAAGTGT+TGG | - | chr1_1:75595017-75595036 | None:intergenic | 40.0% | |
| ! | CCAACACTTCATTACCCTTT+TGG | + | chr1_1:75595014-75595033 | Msa0044100:CDS | 40.0% |
| AGAAGCTTCGAAGATTTCTG+CGG | - | chr1_1:75595107-75595126 | None:intergenic | 40.0% | |
| ! | TTCAACTTGGTGGATATGGT+TGG | - | chr1_1:75595149-75595168 | None:intergenic | 40.0% |
| ! | TGTGTTCAACTTGGTGGATA+TGG | - | chr1_1:75595153-75595172 | None:intergenic | 40.0% |
| TTGCTTGCAGCTATAGCATT+TGG | + | chr1_1:75595274-75595293 | Msa0044100:CDS | 40.0% | |
| GTTACAACCCTTATGGGAAT+TGG | + | chr1_1:75595394-75595413 | Msa0044100:CDS | 40.0% | |
| TCTGTTAGCATGATCTTCCA+AGG | + | chr1_1:75595451-75595470 | Msa0044100:CDS | 40.0% | |
| GGTTGCTTCTTGGAATATGA+AGG | + | chr1_1:75595529-75595548 | Msa0044100:CDS | 40.0% | |
| GGTTAGGTGCAATGATGAAA+AGG | + | chr1_1:75595564-75595583 | Msa0044100:CDS | 40.0% | |
| !! | TATGCATCGTGCTGTTTCAT+TGG | + | chr1_1:75595588-75595607 | Msa0044100:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | + | chr1_1:75595608-75595627 | Msa0044100:CDS | 40.0% | |
| TGGAGGGACATATATGCATG+GGG | + | chr1_1:75594924-75594943 | Msa0044100:CDS | 45.0% | |
| ! | GGAGTTTGAGGTAGTTGAAG+AGG | - | chr1_1:75594979-75594998 | None:intergenic | 45.0% |
| !! | GTGGATATGGTTGGTAGGAA+TGG | - | chr1_1:75595140-75595159 | None:intergenic | 45.0% |
| ! | ACTTGGTGGATATGGTTGGT+AGG | - | chr1_1:75595145-75595164 | None:intergenic | 45.0% |
| ! | TGGAAGTGTGTTCAACTTGG+TGG | - | chr1_1:75595159-75595178 | None:intergenic | 45.0% |
| AGAAGTCACATGGGGATAGA+AGG | + | chr1_1:75595328-75595347 | Msa0044100:CDS | 45.0% | |
| TCAACCCAAAGGTTGCTTCT+TGG | + | chr1_1:75595519-75595538 | Msa0044100:CDS | 45.0% | |
| CTGATGAAGGAGGAACAGTA+CGG | + | chr1_1:75595715-75595734 | Msa0044100:CDS | 45.0% | |
| TGGAGGGACATATATGCATG+GGG | + | chr1_1:75594924-75594943 | Msa0044100:CDS | 45.0% | |
| ! | GGAGTTTGAGGTAGTTGAAG+AGG | - | chr1_1:75594979-75594998 | None:intergenic | 45.0% |
| !! | GTGGATATGGTTGGTAGGAA+TGG | - | chr1_1:75595140-75595159 | None:intergenic | 45.0% |
| ! | ACTTGGTGGATATGGTTGGT+AGG | - | chr1_1:75595145-75595164 | None:intergenic | 45.0% |
| ! | TGGAAGTGTGTTCAACTTGG+TGG | - | chr1_1:75595159-75595178 | None:intergenic | 45.0% |
| AGAAGTCACATGGGGATAGA+AGG | + | chr1_1:75595328-75595347 | Msa0044100:CDS | 45.0% | |
| TCAACCCAAAGGTTGCTTCT+TGG | + | chr1_1:75595519-75595538 | Msa0044100:CDS | 45.0% | |
| CTGATGAAGGAGGAACAGTA+CGG | + | chr1_1:75595715-75595734 | Msa0044100:CDS | 45.0% | |
| GGAGTGCGATTCACTGATGA+AGG | + | chr1_1:75595702-75595721 | Msa0044100:CDS | 50.0% | |
| GTGCGATTCACTGATGAAGG+AGG | + | chr1_1:75595705-75595724 | Msa0044100:CDS | 50.0% | |
| AAGGAGGAACAGTACGGTGA+AGG | + | chr1_1:75595721-75595740 | Msa0044100:CDS | 50.0% | |
| GGAGTGCGATTCACTGATGA+AGG | + | chr1_1:75595702-75595721 | Msa0044100:CDS | 50.0% | |
| GTGCGATTCACTGATGAAGG+AGG | + | chr1_1:75595705-75595724 | Msa0044100:CDS | 50.0% | |
| AAGGAGGAACAGTACGGTGA+AGG | + | chr1_1:75595721-75595740 | Msa0044100:CDS | 50.0% | |
| GGCTGAGAAGATTGCGCAAC+TGG | - | chr1_1:75595086-75595105 | None:intergenic | 55.0% | |
| GAACAGTACGGTGAAGGCGA+TGG | + | chr1_1:75595727-75595746 | Msa0044100:CDS | 55.0% | |
| GGCTGAGAAGATTGCGCAAC+TGG | - | chr1_1:75595086-75595105 | None:intergenic | 55.0% | |
| GAACAGTACGGTGAAGGCGA+TGG | + | chr1_1:75595727-75595746 | Msa0044100:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 75594914 | 75595816 | 75594914 | ID=Msa0044100;Name=Msa0044100 |
| chr1_1 | mRNA | 75594914 | 75595816 | 75594914 | ID=Msa0044100-mRNA-1;Parent=Msa0044100;Name=Msa0044100-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|300 |
| chr1_1 | exon | 75594914 | 75595816 | 75594914 | ID=Msa0044100-mRNA-1:exon:25534;Parent=Msa0044100-mRNA-1 |
| chr1_1 | CDS | 75594914 | 75595816 | 75594914 | ID=Msa0044100-mRNA-1:cds;Parent=Msa0044100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
