AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0542520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542520 MtrunA17_Chr4g0033411 98.795 249 3 0 1 249 1 249 1.62e-179 493
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542520 AT2G31440.2 72.289 249 69 0 1 249 1 249 7.06e-138 387
Msa0542520 AT2G31440.1 72.289 249 69 0 1 249 1 249 7.06e-138 387

Find 62 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCAGACAATGGTTAATT+TGG 0.174762 4_1:+27625959 Msa0542520:intron
TCGATGGTCATTGCATTTAA+TGG 0.182838 4_1:+27624708 Msa0542520:CDS
CAATTTGCAGTACACTATTA+TGG 0.241356 4_1:+27622707 Msa0542520:intron
CCCATTGTTCACGTTGTTGC+AGG 0.280427 4_1:+27624768 Msa0542520:CDS
TTCATTGTGGGAGGATGGTT+TGG 0.299021 4_1:+27626042 Msa0542520:CDS
TAATTGCGTTGTCTGGTATA+TGG 0.302227 4_1:+27622740 Msa0542520:CDS
CGATGGTCATTGCATTTAAT+GGG 0.308439 4_1:+27624709 Msa0542520:CDS
TCAAGATTGCAGTGAAATAA+AGG 0.340631 4_1:-27626013 None:intergenic
TATGTCCAGCAAAACTAAAA+AGG 0.342371 4_1:+27626406 Msa0542520:three_prime_UTR
AAATATGTACTCTGTTAAAC+TGG 0.354795 4_1:+27626512 Msa0542520:three_prime_UTR
TACGAGTGACTTGGTCTGAT+TGG 0.358437 4_1:-27626083 None:intergenic
CCAGCTGGTGGTTTGGGTCA+TGG 0.378666 4_1:+27624246 Msa0542520:intron
ATGACAGTAGCAGCGGGAAT+CGG 0.399149 4_1:+27622500 Msa0542520:CDS
AGCCTATTAACTCCTGCATT+TGG 0.402020 4_1:+27624297 Msa0542520:CDS
CATTCAATTCAACTTCTGTA+TGG 0.403798 4_1:+27622776 Msa0542520:CDS
ATAAGCTTAATTGCGTTGTC+TGG 0.405342 4_1:+27622733 Msa0542520:CDS
ACGAGTGACTTGGTCTGATT+GGG 0.411071 4_1:-27626082 None:intergenic
GACCAAATGCAGGAGTTAAT+AGG 0.427619 4_1:-27624299 None:intergenic
TGACAGTAGCAGCGGGAATC+GGG 0.453663 4_1:+27622501 Msa0542520:CDS
AGAAGAGTGAGAATTAAGAA+TGG 0.462756 4_1:-27622584 None:intergenic
TCTTGACATTAATTCATTGT+GGG 0.463070 4_1:+27626030 Msa0542520:CDS
GGGTACGCGCTGATAGCATT+AGG 0.463486 4_1:+27622521 Msa0542520:CDS
CCTGCAACAACGTGAACAAT+GGG 0.463713 4_1:-27624768 None:intergenic
TAATTCTCACTCTTCTCGCT+AGG 0.480909 4_1:+27622591 Msa0542520:CDS
GGAAATGACGGAAACGAAGA+TGG 0.486326 4_1:-27622555 None:intergenic
AAGCAGGTTTATAAAAGTCT+TGG 0.489160 4_1:+27626355 Msa0542520:exon
CATACAGAAGTTGAATTGAA+TGG 0.493497 4_1:-27622775 None:intergenic
GATAAGATGCTGATTGCTCT+TGG 0.502456 4_1:+27623935 Msa0542520:CDS
ACATTGTGCAACTTAAAAGA+TGG 0.502616 4_1:-27626693 None:intergenic
ATTAATTCATTGTGGGAGGA+TGG 0.517338 4_1:+27626037 Msa0542520:CDS
TTATCAACAAAATATGTAGC+TGG 0.522125 4_1:-27624321 None:intergenic
AAATGCAATGACCATCGAAA+AGG 0.522782 4_1:-27624703 None:intergenic
CAATGGTTAATTTGGCACCT+GGG 0.525377 4_1:+27625967 Msa0542520:CDS
ATCTTGACATTAATTCATTG+TGG 0.526723 4_1:+27626029 Msa0542520:CDS
TGGTGGTTTGGGTCATGGTG+TGG 0.527028 4_1:+27624251 Msa0542520:CDS
AGAAACTCTCACCAGAAAGA+AGG 0.535005 4_1:-27624365 None:intergenic
ACAATGGTTAATTTGGCACC+TGG 0.536016 4_1:+27625966 Msa0542520:CDS
GAGAGGATGAGTATTGCATA+AGG 0.536403 4_1:-27622799 None:intergenic
TCCTGCAACAACGTGAACAA+TGG 0.536699 4_1:-27624769 None:intergenic
GCATTTAATGGGTATGCAGA+GGG 0.537260 4_1:+27624720 Msa0542520:CDS
TCACGTTGTTGCAGGAATGC+TGG 0.544048 4_1:+27624776 Msa0542520:CDS
ATCACTTACTACGAGTGACT+TGG 0.549749 4_1:-27626092 None:intergenic
AAGAAGAATGACAGTAGCAG+CGG 0.556709 4_1:+27622493 Msa0542520:exon
TATGTAGCTGGACCAAATGC+AGG 0.557794 4_1:-27624309 None:intergenic
TTTCCAGAAGAAAAGTCTAA+GGG 0.557868 4_1:-27622842 None:intergenic
AATGGTTAATTTGGCACCTG+GGG 0.559048 4_1:+27625968 Msa0542520:CDS
TGACATTAATTCATTGTGGG+AGG 0.571731 4_1:+27626033 Msa0542520:CDS
TGCATTTAATGGGTATGCAG+AGG 0.592575 4_1:+27624719 Msa0542520:CDS
GACCATCGAAAAGGTGTGGA+TGG 0.606199 4_1:-27624694 None:intergenic
CTTGAAAAGCAACAGAAGAG+AGG 0.613078 4_1:-27622816 None:intergenic
AGAAGAATGACAGTAGCAGC+GGG 0.615878 4_1:+27622494 Msa0542520:exon
GATACAGAAGAACACGGCAT+GGG 0.622659 4_1:-27624274 None:intergenic
AAGTGAAATTTCAACATGTG+AGG 0.626473 4_1:-27626461 None:intergenic
TTATCTGTCAAGAAAAGATG+TGG 0.627748 4_1:-27623917 None:intergenic
TGATACAGAAGAACACGGCA+TGG 0.628083 4_1:-27624275 None:intergenic
CATTTAATGGGTATGCAGAG+GGG 0.637698 4_1:+27624721 Msa0542520:CDS
CAATGACCATCGAAAAGGTG+TGG 0.645237 4_1:-27624698 None:intergenic
GAAACGAAGATGGAGAGAGA+TGG 0.645976 4_1:-27622545 None:intergenic
ATGGTTAATTTGGCACCTGG+GGG 0.666551 4_1:+27625969 Msa0542520:CDS
GTATGCAGAGGGGAACAAAG+TGG 0.674151 4_1:+27624731 Msa0542520:CDS
ATTGCAGTGAAATAAAGGAG+AGG 0.681616 4_1:-27626008 None:intergenic
TAGGCTGATACAGAAGAACA+CGG 0.746599 4_1:-27624280 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGTAATTCTTATTAATAT+TGG + chr4_1:27623049-27623068 Msa0542520:intron 10.0%
!!! ACAGATTAATGTTTTATTTT+CGG + chr4_1:27623833-27623852 Msa0542520:intron 15.0%
!! TTACTGTAAAATTTAAGAAT+TGG - chr4_1:27623992-27624011 None:intergenic 15.0%
!! ATAATAAACTTATTCAAATC+CGG - chr4_1:27624035-27624054 None:intergenic 15.0%
!! AATTGATATATTTACAACAT+AGG + chr4_1:27624903-27624922 Msa0542520:intron 15.0%
!! ATTGATATATTTACAACATA+GGG + chr4_1:27624904-27624923 Msa0542520:intron 15.0%
!!! ATATAATTTTGACCATTAAT+TGG - chr4_1:27625919-27625938 None:intergenic 15.0%
!! ATTAATGGTCAAAATTATAT+TGG + chr4_1:27625919-27625938 Msa0542520:intron 15.0%
!! TGAGAGTAAATAATGAATAA+AGG - chr4_1:27622619-27622638 None:intergenic 20.0%
!!! ACTCTCAATTTTGTTAATTT+AGG + chr4_1:27622632-27622651 Msa0542520:intron 20.0%
!!! CTCTCAATTTTGTTAATTTA+GGG + chr4_1:27622633-27622652 Msa0542520:intron 20.0%
!! ATAAAGAATAAGTACTCTTT+AGG + chr4_1:27623131-27623150 Msa0542520:intron 20.0%
!! TAAAGAATAAGTACTCTTTA+GGG + chr4_1:27623132-27623151 Msa0542520:intron 20.0%
!!! AATTGAAGGGAAAATTTTAT+TGG + chr4_1:27623277-27623296 Msa0542520:intron 20.0%
!!! ATTGAAGGGAAAATTTTATT+GGG + chr4_1:27623278-27623297 Msa0542520:intron 20.0%
!!! TTGTATACTCATTGTTTTAT+TGG + chr4_1:27623707-27623726 Msa0542520:intron 20.0%
!!! AACTATTTTACAATCTGATA+AGG + chr4_1:27623741-27623760 Msa0542520:intron 20.0%
!!! CAGATTAATGTTTTATTTTC+GGG + chr4_1:27623834-27623853 Msa0542520:intron 20.0%
!! AAATTTAAGAATTGGAAAAC+AGG - chr4_1:27623984-27624003 None:intergenic 20.0%
!! TGAGAAAAGATACTATTTAT+TGG + chr4_1:27624161-27624180 Msa0542520:intron 20.0%
!! ATAAAAAACAGTGAACAATT+TGG - chr4_1:27624640-27624659 None:intergenic 20.0%
!! AGAAAAACAGAAATACTTTA+TGG + chr4_1:27625243-27625262 Msa0542520:intron 20.0%
!! ATGATTAACACAATTACTTT+GGG + chr4_1:27625550-27625569 Msa0542520:intron 20.0%
!! TGATGTGTCATAAAAAAAAA+AGG + chr4_1:27625854-27625873 Msa0542520:intron 20.0%
!!! GTACATATTTTAAAATTCGA+AGG - chr4_1:27626502-27626521 None:intergenic 20.0%
!! TTTGTGTCAAAAAAAAAAGA+TGG - chr4_1:27626665-27626684 None:intergenic 20.0%
!!! GAGAATTAAGAATGGTTTTT+TGG - chr4_1:27622579-27622598 None:intergenic 25.0%
! CAAATTGTTGTAATCAGAAA+AGG - chr4_1:27622694-27622713 None:intergenic 25.0%
! GAAAATGTAACCACATATAT+TGG + chr4_1:27622955-27622974 Msa0542520:intron 25.0%
! TTAAAAAAAGCTATGCAACA+CGG - chr4_1:27623032-27623051 None:intergenic 25.0%
! ATTGTGAAAAATATATGCCT+TGG + chr4_1:27623677-27623696 Msa0542520:intron 25.0%
! TTGTGAAAAATATATGCCTT+GGG + chr4_1:27623678-27623697 Msa0542520:intron 25.0%
! GAAACTGCTTTGTAATATTA+TGG + chr4_1:27623785-27623804 Msa0542520:intron 25.0%
!!! TTAATGTTTTATTTTCGGGT+TGG + chr4_1:27623838-27623857 Msa0542520:intron 25.0%
! AAAGAAAAGGGAAGATAATA+TGG - chr4_1:27624073-27624092 None:intergenic 25.0%
!! ATATTATCTTCCCTTTTCTT+TGG + chr4_1:27624072-27624091 Msa0542520:intron 25.0%
!! TATTATCTTCCCTTTTCTTT+GGG + chr4_1:27624073-27624092 Msa0542520:intron 25.0%
! AATGGAATTAGATTCAATCA+AGG - chr4_1:27624112-27624131 None:intergenic 25.0%
!! ACAAGGGATTCATTTTATAA+TGG - chr4_1:27624130-27624149 None:intergenic 25.0%
! AAAAGACAATTCATCAATAC+AGG - chr4_1:27624215-27624234 None:intergenic 25.0%
! TTATCAACAAAATATGTAGC+TGG - chr4_1:27624324-27624343 None:intergenic 25.0%
! ATAAATATACAGTTAAGCCT+CGG - chr4_1:27624452-27624471 None:intergenic 25.0%
! TTGTTTATGCACTAAAAACT+GGG - chr4_1:27624549-27624568 None:intergenic 25.0%
!!! TGTTTTTTATATGATTGCAG+CGG + chr4_1:27624650-27624669 Msa0542520:intron 25.0%
!! AATAGAAGCTAATGTGATTT+TGG - chr4_1:27624865-27624884 None:intergenic 25.0%
! AACTATGTCATAAAACAAAC+TGG - chr4_1:27625028-27625047 None:intergenic 25.0%
!!! TCATTTTTGAGCTTGTTATT+TGG + chr4_1:27625055-27625074 Msa0542520:intron 25.0%
!!! CATTTTTGAGCTTGTTATTT+GGG + chr4_1:27625056-27625075 Msa0542520:intron 25.0%
!! ATCTTACAACAAAAAGTATG+TGG - chr4_1:27625373-27625392 None:intergenic 25.0%
!!! ACATACTTTTTGTTGTAAGA+TGG + chr4_1:27625372-27625391 Msa0542520:intron 25.0%
! AATGTAAGAAAACTGTTGTA+CGG - chr4_1:27625423-27625442 None:intergenic 25.0%
!! CAGTTTTCTTACATTATGAA+AGG + chr4_1:27625428-27625447 Msa0542520:intron 25.0%
! CATGATTAACACAATTACTT+TGG + chr4_1:27625549-27625568 Msa0542520:intron 25.0%
! CAATAATAATGTCTCTAAGT+AGG - chr4_1:27625818-27625837 None:intergenic 25.0%
! TAGAGACATTATTATTGAGT+AGG + chr4_1:27625821-27625840 Msa0542520:intron 25.0%
!!! ATTTTGACCATTAATTGGAA+GGG - chr4_1:27625914-27625933 None:intergenic 25.0%
!!! AATTTTGACCATTAATTGGA+AGG - chr4_1:27625915-27625934 None:intergenic 25.0%
! AATTAACCATTGTCTGAATA+AGG - chr4_1:27625959-27625978 None:intergenic 25.0%
! TATTCAGACAATGGTTAATT+TGG + chr4_1:27625959-27625978 Msa0542520:intron 25.0%
! ATCTTGACATTAATTCATTG+TGG + chr4_1:27626029-27626048 Msa0542520:CDS 25.0%
! TCTTGACATTAATTCATTGT+GGG + chr4_1:27626030-27626049 Msa0542520:CDS 25.0%
! ATTCATTTATCATCATCACT+GGG + chr4_1:27626296-27626315 Msa0542520:intron 25.0%
!!! AATTACCTTTTTAGTTTTGC+TGG - chr4_1:27626414-27626433 None:intergenic 25.0%
! AAATATGTACTCTGTTAAAC+TGG + chr4_1:27626512-27626531 Msa0542520:three_prime_UTR 25.0%
! AAAAAGATGGTTTCATTTCA+AGG - chr4_1:27626652-27626671 None:intergenic 25.0%
!!! GAATGGTTTTTTGGAAATGA+CGG - chr4_1:27622570-27622589 None:intergenic 30.0%
AGAAGAGTGAGAATTAAGAA+TGG - chr4_1:27622587-27622606 None:intergenic 30.0%
! TAATCAGAAAAGGCATGAAT+TGG - chr4_1:27622684-27622703 None:intergenic 30.0%
CAATTTGCAGTACACTATTA+TGG + chr4_1:27622707-27622726 Msa0542520:intron 30.0%
CATACAGAAGTTGAATTGAA+TGG - chr4_1:27622778-27622797 None:intergenic 30.0%
CATTCAATTCAACTTCTGTA+TGG + chr4_1:27622776-27622795 Msa0542520:CDS 30.0%
TTTCCAGAAGAAAAGTCTAA+GGG - chr4_1:27622845-27622864 None:intergenic 30.0%
! TTTTCCAGAAGAAAAGTCTA+AGG - chr4_1:27622846-27622865 None:intergenic 30.0%
TCATAGGTAAAAAGTAGAGT+TGG - chr4_1:27622890-27622909 None:intergenic 30.0%
GATGTATTTAGAAACTACTG+TGG + chr4_1:27623076-27623095 Msa0542520:intron 30.0%
! AATTTTCCCTTCAATTTGAG+CGG - chr4_1:27623273-27623292 None:intergenic 30.0%
ACACTTAATTTCTTTCTTGC+TGG - chr4_1:27623359-27623378 None:intergenic 30.0%
!! ATCCTTCTTGATAGTTTTCT+AGG - chr4_1:27623504-27623523 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr4_1:27623552-27623571 Msa0542520:intron 30.0%
TTGTTGTAAACACACTTTAG+AGG + chr4_1:27623635-27623654 Msa0542520:intron 30.0%
TGTTGTAAACACACTTTAGA+GGG + chr4_1:27623636-27623655 Msa0542520:intron 30.0%
TGTGAAAAATATATGCCTTG+GGG + chr4_1:27623679-27623698 Msa0542520:intron 30.0%
!! GAAATCTGTGACTATTTTGA+TGG + chr4_1:27623763-27623782 Msa0542520:intron 30.0%
TTATCTGTCAAGAAAAGATG+TGG - chr4_1:27623920-27623939 None:intergenic 30.0%
TAAGAAAAATCGAGACTTTC+CGG + chr4_1:27623958-27623977 Msa0542520:intron 30.0%
ATTAGATTCAATCAAGGATC+TGG - chr4_1:27624106-27624125 None:intergenic 30.0%
TTCCATGCATATGAAAACTA+GGG - chr4_1:27624395-27624414 None:intergenic 30.0%
ATTCCATGCATATGAAAACT+AGG - chr4_1:27624396-27624415 None:intergenic 30.0%
! ATTCTGCAGTTTCAAACTTT+TGG + chr4_1:27624414-27624433 Msa0542520:intron 30.0%
TAAATATACAGTTAAGCCTC+GGG - chr4_1:27624451-27624470 None:intergenic 30.0%
TGTTTATGCACTAAAAACTG+GGG - chr4_1:27624548-27624567 None:intergenic 30.0%
GTTGTTTATGCACTAAAAAC+TGG - chr4_1:27624550-27624569 None:intergenic 30.0%
AAAAACAGTGAACAATTTGG+AGG - chr4_1:27624637-27624656 None:intergenic 30.0%
! ATAACTTTGCATCATTGGTT+AGG - chr4_1:27624936-27624955 None:intergenic 30.0%
TTGGTATAACTTTGCATCAT+TGG - chr4_1:27624941-27624960 None:intergenic 30.0%
!!! GATGTAGGTTCTAAATTTTC+AGG - chr4_1:27625085-27625104 None:intergenic 30.0%
GTGACTTTCAATATTCACAA+GGG - chr4_1:27625110-27625129 None:intergenic 30.0%
TGTGACTTTCAATATTCACA+AGG - chr4_1:27625111-27625130 None:intergenic 30.0%
TATTGAAAGTCACATGAGTA+AGG + chr4_1:27625117-27625136 Msa0542520:intron 30.0%
! TTTGTTGTAAGATGGTGTTA+TGG + chr4_1:27625380-27625399 Msa0542520:intron 30.0%
AGTTTGCAGATTTGAAAAGT+TGG + chr4_1:27625523-27625542 Msa0542520:intron 30.0%
! CTAGATAAAAGGTTTTCCTA+TGG - chr4_1:27625632-27625651 None:intergenic 30.0%
! CATAGGAAAACCTTTTATCT+AGG + chr4_1:27625630-27625649 Msa0542520:intron 30.0%
CAGAAAATCAAATCATTTGC+AGG - chr4_1:27625687-27625706 None:intergenic 30.0%
! GATTTTTCCCTTCCAATTAA+TGG + chr4_1:27625904-27625923 Msa0542520:intron 30.0%
TCAAGATTGCAGTGAAATAA+AGG - chr4_1:27626016-27626035 None:intergenic 30.0%
GTATCTTTATGTATTCCAAC+CGG - chr4_1:27626166-27626185 None:intergenic 30.0%
!! CTCCTGTTTCTGATTTAAAT+GGG + chr4_1:27626227-27626246 Msa0542520:intron 30.0%
TACCCATTTAAATCAGAAAC+AGG - chr4_1:27626232-27626251 None:intergenic 30.0%
! TGTTTCTGATTTAAATGGGT+AGG + chr4_1:27626231-27626250 Msa0542520:intron 30.0%
GTTTCTGATTTAAATGGGTA+GGG + chr4_1:27626232-27626251 Msa0542520:intron 30.0%
GATTCATTTATCATCATCAC+TGG + chr4_1:27626295-27626314 Msa0542520:intron 30.0%
AAGCAGGTTTATAAAAGTCT+TGG + chr4_1:27626355-27626374 Msa0542520:exon 30.0%
TATGTCCAGCAAAACTAAAA+AGG + chr4_1:27626406-27626425 Msa0542520:three_prime_UTR 30.0%
AAGTGAAATTTCAACATGTG+AGG - chr4_1:27626464-27626483 None:intergenic 30.0%
ACATTGTGCAACTTAAAAGA+TGG - chr4_1:27626696-27626715 None:intergenic 30.0%
ATAAGCTTAATTGCGTTGTC+TGG + chr4_1:27622733-27622752 Msa0542520:CDS 35.0%
TAATTGCGTTGTCTGGTATA+TGG + chr4_1:27622740-27622759 Msa0542520:CDS 35.0%
TGTTTGTGTGAGTGTATCAT+AGG - chr4_1:27622906-27622925 None:intergenic 35.0%
GTGACTTAAGGATATCTATC+AGG - chr4_1:27623207-27623226 None:intergenic 35.0%
GATAGATATCCTTAAGTCAC+TGG + chr4_1:27623207-27623226 Msa0542520:intron 35.0%
!! TTAAGTCACTGGTTCAATTC+CGG + chr4_1:27623218-27623237 Msa0542520:intron 35.0%
AAAAAAGACATCTGACCTAC+CGG - chr4_1:27623240-27623259 None:intergenic 35.0%
!! AAAGTACCGCTCAAATTGAA+GGG + chr4_1:27623264-27623283 Msa0542520:intron 35.0%
GATGATAGAAGCTAAGACTT+AGG + chr4_1:27623385-27623404 Msa0542520:intron 35.0%
TGTAAGGATAGTAGATCACA+TGG + chr4_1:27623446-27623465 Msa0542520:intron 35.0%
GACCTAGAAAACTATCAAGA+AGG + chr4_1:27623499-27623518 Msa0542520:intron 35.0%
! CAATGAGTTGGAGAAAGATA+TGG + chr4_1:27623532-27623551 Msa0542520:intron 35.0%
!! ACTCATTGTTTTATTGGCCT+TGG + chr4_1:27623713-27623732 Msa0542520:intron 35.0%
!!! ATTGTTTTATTGGCCTTGGA+CGG + chr4_1:27623717-27623736 Msa0542520:intron 35.0%
TGTAAAATAGTTTCCGTCCA+AGG - chr4_1:27623733-27623752 None:intergenic 35.0%
! TATGGTGATGTTTCTTATGC+TGG + chr4_1:27623803-27623822 Msa0542520:intron 35.0%
TTAAGAATTGGAAAACAGGC+CGG - chr4_1:27623980-27623999 None:intergenic 35.0%
TTGTCAAGTGTTTGTTTGAC+CGG + chr4_1:27624013-27624032 Msa0542520:intron 35.0%
GGTTAAATGCCCAAAGAAAA+GGG - chr4_1:27624085-27624104 None:intergenic 35.0%
TGGTTAAATGCCCAAAGAAA+AGG - chr4_1:27624086-27624105 None:intergenic 35.0%
TCTCAATAGCATCACAACAA+GGG - chr4_1:27624146-27624165 None:intergenic 35.0%
TTCTCAATAGCATCACAACA+AGG - chr4_1:27624147-27624166 None:intergenic 35.0%
!!! TTTTCTGTTTTTTTGCCAGC+TGG + chr4_1:27624231-27624250 Msa0542520:intron 35.0%
!! ATTCCGTTTTTCCTTCTTTC+TGG + chr4_1:27624354-27624373 Msa0542520:CDS 35.0%
TCACCAGAAAGAAGGAAAAA+CGG - chr4_1:27624360-27624379 None:intergenic 35.0%
ATGCATATGAAAACTAGGGT+TGG - chr4_1:27624391-27624410 None:intergenic 35.0%
!! AACCCTAGTTTTCATATGCA+TGG + chr4_1:27624390-27624409 Msa0542520:intron 35.0%
!!! TTTGGAATTTTTTGTACCCG+AGG + chr4_1:27624432-27624451 Msa0542520:intron 35.0%
GTGAATCTATAGAGATCGAT+TGG + chr4_1:27624481-27624500 Msa0542520:intron 35.0%
GGTTTAAGAGAATCTTGAAG+TGG + chr4_1:27624508-27624527 Msa0542520:intron 35.0%
AAATGCAATGACCATCGAAA+AGG - chr4_1:27624706-27624725 None:intergenic 35.0%
TCGATGGTCATTGCATTTAA+TGG + chr4_1:27624708-27624727 Msa0542520:CDS 35.0%
CGATGGTCATTGCATTTAAT+GGG + chr4_1:27624709-27624728 Msa0542520:CDS 35.0%
GCGACAGAGTATGTATAATA+GGG - chr4_1:27624835-27624854 None:intergenic 35.0%
AGCGACAGAGTATGTATAAT+AGG - chr4_1:27624836-27624855 None:intergenic 35.0%
ATATTCACAAGGGATGATGT+AGG - chr4_1:27625100-27625119 None:intergenic 35.0%
AAATAACTAGAACTGTGACG+TGG + chr4_1:27625144-27625163 Msa0542520:intron 35.0%
GTGGTAGCAAACAAAAACAA+AGG - chr4_1:27625305-27625324 None:intergenic 35.0%
ACAAAGTTAAAGCAATGCCA+AGG - chr4_1:27625338-27625357 None:intergenic 35.0%
! ACAAAAAGTATGTGGCAAGT+TGG - chr4_1:27625365-27625384 None:intergenic 35.0%
!! AGATGGTGTTATGGTTTGTT+TGG + chr4_1:27625389-27625408 Msa0542520:intron 35.0%
! CTTACATTATGAAAGGCATG+TGG + chr4_1:27625435-27625454 Msa0542520:intron 35.0%
!! ACACAATTACTTTGGGATGT+AGG + chr4_1:27625557-27625576 Msa0542520:intron 35.0%
!! TTACTTTGGGATGTAGGAAT+AGG + chr4_1:27625563-27625582 Msa0542520:intron 35.0%
CTAAACCATGCATTTACCAT+AGG + chr4_1:27625613-27625632 Msa0542520:intron 35.0%
! GTTTTCCTATGGTAAATGCA+TGG - chr4_1:27625621-27625640 None:intergenic 35.0%
TAGGCAATCACCTAGATAAA+AGG - chr4_1:27625643-27625662 None:intergenic 35.0%
! ATTCAAGCTTGACTAGCTAT+AGG - chr4_1:27625662-27625681 None:intergenic 35.0%
ATAATGTAGTATCCTTCCTC+TGG + chr4_1:27625729-27625748 Msa0542520:intron 35.0%
CGAAAACAGTGAAACTACAA+CGG + chr4_1:27625774-27625793 Msa0542520:intron 35.0%
AAGGGAAAAATCAAAGCACA+AGG - chr4_1:27625896-27625915 None:intergenic 35.0%
CTGTTTCCTTATTCAGACAA+TGG + chr4_1:27625950-27625969 Msa0542520:intron 35.0%
ATTGCAGTGAAATAAAGGAG+AGG - chr4_1:27626011-27626030 None:intergenic 35.0%
TGACATTAATTCATTGTGGG+AGG + chr4_1:27626033-27626052 Msa0542520:CDS 35.0%
ATTAATTCATTGTGGGAGGA+TGG + chr4_1:27626037-27626056 Msa0542520:CDS 35.0%
TTTATGTATTCCAACCGGAA+TGG - chr4_1:27626161-27626180 None:intergenic 35.0%
ATACCAGTAGTTGTATTGCA+TGG + chr4_1:27626182-27626201 Msa0542520:intron 35.0%
TTTCCATGCAATACAACTAC+TGG - chr4_1:27626188-27626207 None:intergenic 35.0%
!! GCTCCTGTTTCTGATTTAAA+TGG + chr4_1:27626226-27626245 Msa0542520:intron 35.0%
TTAAATGGGTAGGGTTACTA+TGG + chr4_1:27626241-27626260 Msa0542520:intron 35.0%
TAAATGGGTAGGGTTACTAT+GGG + chr4_1:27626242-27626261 Msa0542520:intron 35.0%
AAGAAGAATGACAGTAGCAG+CGG + chr4_1:27622493-27622512 Msa0542520:exon 40.0%
TAATTCTCACTCTTCTCGCT+AGG + chr4_1:27622591-27622610 Msa0542520:CDS 40.0%
! GAGAGGATGAGTATTGCATA+AGG - chr4_1:27622802-27622821 None:intergenic 40.0%
CTTGAAAAGCAACAGAAGAG+AGG - chr4_1:27622819-27622838 None:intergenic 40.0%
! AAGCCCTTAGACTTTTCTTC+TGG + chr4_1:27622839-27622858 Msa0542520:CDS 40.0%
ACGCACGATACCAATATATG+TGG - chr4_1:27622968-27622987 None:intergenic 40.0%
GGAATTGAACCAGTGACTTA+AGG - chr4_1:27623219-27623238 None:intergenic 40.0%
!! GAAAGTACCGCTCAAATTGA+AGG + chr4_1:27623263-27623282 Msa0542520:intron 40.0%
GATAGAAGCTAAGACTTAGG+TGG + chr4_1:27623388-27623407 Msa0542520:intron 40.0%
ATCCTTACAACAGCATTCAC+AGG - chr4_1:27623435-27623454 None:intergenic 40.0%
AAGGATAGTAGATCACATGG+AGG + chr4_1:27623449-27623468 Msa0542520:intron 40.0%
AGGATAGTAGATCACATGGA+GGG + chr4_1:27623450-27623469 Msa0542520:intron 40.0%
GGATCTAGAGATCAATGAGT+TGG + chr4_1:27623520-27623539 Msa0542520:intron 40.0%
AAGATTTATCCCACTCAGTG+GGG - chr4_1:27623601-27623620 None:intergenic 40.0%
CAAGATTTATCCCACTCAGT+GGG - chr4_1:27623602-27623621 None:intergenic 40.0%
! TGTAAACACACTTTAGAGGG+AGG + chr4_1:27623639-27623658 Msa0542520:intron 40.0%
!! CACTTTAGAGGGAGGTTTTT+AGG + chr4_1:27623647-27623666 Msa0542520:intron 40.0%
AAAATATATGCCTTGGGGAG+AGG + chr4_1:27623684-27623703 Msa0542520:intron 40.0%
!!! TTTTCGGGTTGGTATTGTGT+AGG + chr4_1:27623849-27623868 Msa0542520:intron 40.0%
! GATAAGATGCTGATTGCTCT+TGG + chr4_1:27623935-27623954 Msa0542520:CDS 40.0%
TAGGCTGATACAGAAGAACA+CGG - chr4_1:27624283-27624302 None:intergenic 40.0%
AGCCTATTAACTCCTGCATT+TGG + chr4_1:27624297-27624316 Msa0542520:CDS 40.0%
GACCAAATGCAGGAGTTAAT+AGG - chr4_1:27624302-27624321 None:intergenic 40.0%
AGAAACTCTCACCAGAAAGA+AGG - chr4_1:27624368-27624387 None:intergenic 40.0%
CTATAGAGATCGATTGGAGT+TGG + chr4_1:27624487-27624506 Msa0542520:intron 40.0%
! TGCATTTAATGGGTATGCAG+AGG + chr4_1:27624719-27624738 Msa0542520:CDS 40.0%
! GCATTTAATGGGTATGCAGA+GGG + chr4_1:27624720-27624739 Msa0542520:CDS 40.0%
! CATTTAATGGGTATGCAGAG+GGG + chr4_1:27624721-27624740 Msa0542520:CDS 40.0%
TAGTTGCACAGCAAAGGATT+TGG - chr4_1:27624960-27624979 None:intergenic 40.0%
GTTCATTAGTTGCACAGCAA+AGG - chr4_1:27624966-27624985 None:intergenic 40.0%
AAACAAAGGCAACATAGCAG+CGG - chr4_1:27625291-27625310 None:intergenic 40.0%
TCGACCAAATTCAAGCAGAT+AGG - chr4_1:27625757-27625776 None:intergenic 40.0%
CAGTGAAACTACAACGGAAA+TGG + chr4_1:27625780-27625799 Msa0542520:intron 40.0%
! ACAATGGTTAATTTGGCACC+TGG + chr4_1:27625966-27625985 Msa0542520:CDS 40.0%
! CAATGGTTAATTTGGCACCT+GGG + chr4_1:27625967-27625986 Msa0542520:CDS 40.0%
! AATGGTTAATTTGGCACCTG+GGG + chr4_1:27625968-27625987 Msa0542520:CDS 40.0%
ATCACTTACTACGAGTGACT+TGG - chr4_1:27626095-27626114 None:intergenic 40.0%
! GAAACAGGAGCATAACATCA+AGG - chr4_1:27626217-27626236 None:intergenic 40.0%
AAATGGGTAGGGTTACTATG+GGG + chr4_1:27626243-27626262 Msa0542520:intron 40.0%
TTATCATCATCACTGGGATC+AGG + chr4_1:27626302-27626321 Msa0542520:intron 40.0%
AGAAGAATGACAGTAGCAGC+GGG + chr4_1:27622494-27622513 Msa0542520:exon 45.0%
GAAACGAAGATGGAGAGAGA+TGG - chr4_1:27622548-27622567 None:intergenic 45.0%
! GGAAATGACGGAAACGAAGA+TGG - chr4_1:27622558-27622577 None:intergenic 45.0%
! TCTACTGACTGAGCTAAGGT+CGG - chr4_1:27623159-27623178 None:intergenic 45.0%
TTGGGCAACAGTAAGACTAC+TGG + chr4_1:27623296-27623315 Msa0542520:intron 45.0%
TGTTGTACGAGACACAGTGT+TGG + chr4_1:27623322-27623341 Msa0542520:intron 45.0%
GTTGTACGAGACACAGTGTT+GGG + chr4_1:27623323-27623342 Msa0542520:intron 45.0%
GACCTGTGAATGCTGTTGTA+AGG + chr4_1:27623430-27623449 Msa0542520:intron 45.0%
GGATAGTAGATCACATGGAG+GGG + chr4_1:27623451-27623470 Msa0542520:intron 45.0%
CCAAGATTTATCCCACTCAG+TGG - chr4_1:27623603-27623622 None:intergenic 45.0%
CCACTGAGTGGGATAAATCT+TGG + chr4_1:27623600-27623619 Msa0542520:intron 45.0%
!!! TCTGTTTTTTTGCCAGCTGG+TGG + chr4_1:27624234-27624253 Msa0542520:intron 45.0%
!!! TTTTTTGCCAGCTGGTGGTT+TGG + chr4_1:27624239-27624258 Msa0542520:intron 45.0%
! TTTTTGCCAGCTGGTGGTTT+GGG + chr4_1:27624240-27624259 Msa0542520:intron 45.0%
GATACAGAAGAACACGGCAT+GGG - chr4_1:27624277-27624296 None:intergenic 45.0%
TGATACAGAAGAACACGGCA+TGG - chr4_1:27624278-27624297 None:intergenic 45.0%
TATGTAGCTGGACCAAATGC+AGG - chr4_1:27624312-27624331 None:intergenic 45.0%
GTGCATAAACAACAGCGACT+TGG + chr4_1:27624557-27624576 Msa0542520:intron 45.0%
CAATGACCATCGAAAAGGTG+TGG - chr4_1:27624701-27624720 None:intergenic 45.0%
CCTGCAACAACGTGAACAAT+GGG - chr4_1:27624771-27624790 None:intergenic 45.0%
TCCTGCAACAACGTGAACAA+TGG - chr4_1:27624772-27624791 None:intergenic 45.0%
GCTTTGCAGCTTCGTTAGTA+AGG - chr4_1:27625269-27625288 None:intergenic 45.0%
GCAATGCCAAGGAAACTGAA+GGG - chr4_1:27625327-27625346 None:intergenic 45.0%
AGCAATGCCAAGGAAACTGA+AGG - chr4_1:27625328-27625347 None:intergenic 45.0%
!! GGTGTTATGGTTTGTTTGGC+CGG + chr4_1:27625393-27625412 Msa0542520:intron 45.0%
!! GTGTTATGGTTTGTTTGGCC+GGG + chr4_1:27625394-27625413 Msa0542520:intron 45.0%
AAAACTGTTGTACGGTAGCC+CGG - chr4_1:27625415-27625434 None:intergenic 45.0%
GGTGCCTATCTGCTTGAATT+TGG + chr4_1:27625750-27625769 Msa0542520:intron 45.0%
! ATGGTTAATTTGGCACCTGG+GGG + chr4_1:27625969-27625988 Msa0542520:CDS 45.0%
TTCATTGTGGGAGGATGGTT+TGG + chr4_1:27626042-27626061 Msa0542520:CDS 45.0%
!! ACGAGTGACTTGGTCTGATT+GGG - chr4_1:27626085-27626104 None:intergenic 45.0%
!! TACGAGTGACTTGGTCTGAT+TGG - chr4_1:27626086-27626105 None:intergenic 45.0%
ACTTCCTGTCTTCACCATTC+CGG + chr4_1:27626144-27626163 Msa0542520:intron 45.0%
AAGTCTCTGTTTGCAGAAGC+AGG + chr4_1:27626339-27626358 Msa0542520:intron 45.0%
ATGACAGTAGCAGCGGGAAT+CGG + chr4_1:27622500-27622519 Msa0542520:CDS 50.0%
GGTATCGTGCGTGTTAGTGT+TGG + chr4_1:27622976-27622995 Msa0542520:intron 50.0%
! CTACTGACTGAGCTAAGGTC+GGG - chr4_1:27623158-27623177 None:intergenic 50.0%
CCTTAGCTCAGTCAGTAGAG+CGG + chr4_1:27623160-27623179 Msa0542520:intron 50.0%
! AGTAGAGCGGAGGAGTGTAA+TGG + chr4_1:27623173-27623192 Msa0542520:intron 50.0%
! GTAGAGCGGAGGAGTGTAAT+GGG + chr4_1:27623174-27623193 Msa0542520:intron 50.0%
!! GTCACTGGTTCAATTCCGGT+AGG + chr4_1:27623222-27623241 Msa0542520:intron 50.0%
GACGCAAATCACCAGAGGTA+GGG + chr4_1:27623473-27623492 Msa0542520:intron 50.0%
ACGCAAATCACCAGAGGTAG+GGG + chr4_1:27623474-27623493 Msa0542520:intron 50.0%
ATGTAGTTGACCCCACTGAG+TGG + chr4_1:27623588-27623607 Msa0542520:intron 50.0%
TGTAGTTGACCCCACTGAGT+GGG + chr4_1:27623589-27623608 Msa0542520:intron 50.0%
GAGTATACAACCTCTCCCCA+AGG - chr4_1:27623697-27623716 None:intergenic 50.0%
! CACCATCCACACCTTTTCGA+TGG + chr4_1:27624692-27624711 Msa0542520:CDS 50.0%
! GACCATCGAAAAGGTGTGGA+TGG - chr4_1:27624697-27624716 None:intergenic 50.0%
GTATGCAGAGGGGAACAAAG+TGG + chr4_1:27624731-27624750 Msa0542520:CDS 50.0%
CCCATTGTTCACGTTGTTGC+AGG + chr4_1:27624768-27624787 Msa0542520:CDS 50.0%
TCACGTTGTTGCAGGAATGC+TGG + chr4_1:27624776-27624795 Msa0542520:CDS 50.0%
CTACCACCCTTCAGTTTCCT+TGG + chr4_1:27625318-27625337 Msa0542520:intron 50.0%
ATGCCAAGGAAACTGAAGGG+TGG - chr4_1:27625324-27625343 None:intergenic 50.0%
TTCAAGCAGATAGGCACCAG+AGG - chr4_1:27625748-27625767 None:intergenic 50.0%
TACAACGGAAATGGACACCC+TGG + chr4_1:27625789-27625808 Msa0542520:intron 50.0%
TGTCTCTAAGTAGGCCTCCA+GGG - chr4_1:27625809-27625828 None:intergenic 50.0%
ATGTCTCTAAGTAGGCCTCC+AGG - chr4_1:27625810-27625829 None:intergenic 50.0%
TGACAGTAGCAGCGGGAATC+GGG + chr4_1:27622501-27622520 Msa0542520:CDS 55.0%
! GGGTACGCGCTGATAGCATT+AGG + chr4_1:27622521-27622540 Msa0542520:CDS 55.0%
! CCGCTCTACTGACTGAGCTA+AGG - chr4_1:27623163-27623182 None:intergenic 55.0%
TAGCTCAGTCAGTAGAGCGG+AGG + chr4_1:27623163-27623182 Msa0542520:intron 55.0%
! GTACGAGACACAGTGTTGGG+TGG + chr4_1:27623326-27623345 Msa0542520:intron 55.0%
GGACGCAAATCACCAGAGGT+AGG + chr4_1:27623472-27623491 Msa0542520:intron 55.0%
TCTAGGTCTTCCCCTACCTC+TGG - chr4_1:27623487-27623506 None:intergenic 55.0%
! TGGTGGTTTGGGTCATGGTG+TGG + chr4_1:27624251-27624270 Msa0542520:CDS 55.0%
AGCAGATAGGCACCAGAGGA+AGG - chr4_1:27625744-27625763 None:intergenic 55.0%
AACGGAAATGGACACCCTGG+AGG + chr4_1:27625792-27625811 Msa0542520:intron 55.0%
CCAACCGGAATGGTGAAGAC+AGG - chr4_1:27626151-27626170 None:intergenic 55.0%
CCTGTCTTCACCATTCCGGT+TGG + chr4_1:27626148-27626167 Msa0542520:intron 55.0%
GAGGGGACGCAAATCACCAG+AGG + chr4_1:27623468-27623487 Msa0542520:intron 60.0%
CCATGACCCAAACCACCAGC+TGG - chr4_1:27624249-27624268 None:intergenic 60.0%
! CCAGCTGGTGGTTTGGGTCA+TGG + chr4_1:27624246-27624265 Msa0542520:intron 60.0%
ATGCCAACAGCGCAACCCCC+AGG - chr4_1:27625987-27626006 None:intergenic 65.0%
GCACCTGGGGGTTGCGCTGT+TGG + chr4_1:27625981-27626000 Msa0542520:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 27622444 27626718 27622444 ID=Msa0542520;Name=Msa0542520
chr4_1 mRNA 27622444 27626718 27622444 ID=Msa0542520-mRNA-1;Parent=Msa0542520;Name=Msa0542520-mRNA-1;_AED=0.12;_eAED=0.12;_QI=56|1|1|1|0.62|0.55|9|254|249
chr4_1 exon 27622444 27622612 27622444 ID=Msa0542520-mRNA-1:exon:7454;Parent=Msa0542520-mRNA-1
chr4_1 exon 27622717 27622872 27622717 ID=Msa0542520-mRNA-1:exon:7455;Parent=Msa0542520-mRNA-1
chr4_1 exon 27623871 27623956 27623871 ID=Msa0542520-mRNA-1:exon:7456;Parent=Msa0542520-mRNA-1
chr4_1 exon 27624250 27624375 27624250 ID=Msa0542520-mRNA-1:exon:7457;Parent=Msa0542520-mRNA-1
chr4_1 exon 27624670 27624797 27624670 ID=Msa0542520-mRNA-1:exon:7458;Parent=Msa0542520-mRNA-1
chr4_1 exon 27625966 27626105 27625966 ID=Msa0542520-mRNA-1:exon:7459;Parent=Msa0542520-mRNA-1
chr4_1 exon 27626355 27626559 27626355 ID=Msa0542520-mRNA-1:exon:7460;Parent=Msa0542520-mRNA-1
chr4_1 exon 27626638 27626655 27626638 ID=Msa0542520-mRNA-1:exon:7461;Parent=Msa0542520-mRNA-1
chr4_1 exon 27626687 27626718 27626687 ID=Msa0542520-mRNA-1:exon:7462;Parent=Msa0542520-mRNA-1
chr4_1 five_prime_UTR 27622444 27622499 27622444 ID=Msa0542520-mRNA-1:five_prime_utr;Parent=Msa0542520-mRNA-1
chr4_1 CDS 27622500 27622612 27622500 ID=Msa0542520-mRNA-1:cds;Parent=Msa0542520-mRNA-1
chr4_1 CDS 27622717 27622872 27622717 ID=Msa0542520-mRNA-1:cds;Parent=Msa0542520-mRNA-1
chr4_1 CDS 27623871 27623956 27623871 ID=Msa0542520-mRNA-1:cds;Parent=Msa0542520-mRNA-1
chr4_1 CDS 27624250 27624375 27624250 ID=Msa0542520-mRNA-1:cds;Parent=Msa0542520-mRNA-1
chr4_1 CDS 27624670 27624797 27624670 ID=Msa0542520-mRNA-1:cds;Parent=Msa0542520-mRNA-1
chr4_1 CDS 27625966 27626105 27625966 ID=Msa0542520-mRNA-1:cds;Parent=Msa0542520-mRNA-1
chr4_1 CDS 27626355 27626355 27626355 ID=Msa0542520-mRNA-1:cds;Parent=Msa0542520-mRNA-1
chr4_1 three_prime_UTR 27626356 27626559 27626356 ID=Msa0542520-mRNA-1:three_prime_utr;Parent=Msa0542520-mRNA-1
chr4_1 three_prime_UTR 27626638 27626655 27626638 ID=Msa0542520-mRNA-1:three_prime_utr;Parent=Msa0542520-mRNA-1
chr4_1 three_prime_UTR 27626687 27626718 27626687 ID=Msa0542520-mRNA-1:three_prime_utr;Parent=Msa0542520-mRNA-1
Gene Sequence

>Msa0542520

ATGACAGTAGCAGCGGGAATCGGGTACGCGCTGATAGCATTAGGACCATCTCTCTCCATCTTCGTTTCCGTCATTTCCAAAAAACCATTCTTAATTCTCACTCTTCTCGCTAGTACACTATTATGGCTTATAAGCTTAATTGCGTTGTCTGGTATATGGAGAGCTTTTCTTCCATTCAATTCAACTTCTGTATGGCCTTATGCAATACTCATCCTCTCTTCTGTTGCTTTTCAAGAAGCCCTTAGACTTTTCTTCTGGAAAATATTCAAGAGATTAGAAGATATGTTAGATGCTTTTGCTGATAGAGTATCAAAGCCACATCTTTTCTTGACAGATAAGATGCTGATTGCTCTTGCTGGTGGTTTGGGTCATGGTGTGGCCCATGCCGTGTTCTTCTGTATCAGCCTATTAACTCCTGCATTTGGTCCAGCTACATATTTTGTTGATAAGTGTTCAAAGATTCCGTTTTTCCTTCTTTCTGCGGTTATCGCTCTTGCATTTGTCACCATCCACACCTTTTCGATGGTCATTGCATTTAATGGGTATGCAGAGGGGAACAAAGTGGATCGTTATTTTGTTCCCATTGTTCACGTTGTTGCAGGAATGCTGACAATGGTTAATTTGGCACCTGGGGGTTGCGCTGTTGGCATTCCTCTCCTTTATTTCACTGCAATCTTGACATTAATTCATTGTGGGAGGATGGTTTGGAGAAGATTGACAGAAAACCCAATCAGACCAAGTCACTCGTAA

Protein sequence

>Msa0542520

MTVAAGIGYALIALGPSLSIFVSVISKKPFLILTLLASTLLWLISLIALSGIWRAFLPFNSTSVWPYAILILSSVAFQEALRLFFWKIFKRLEDMLDAFADRVSKPHLFLTDKMLIALAGGLGHGVAHAVFFCISLLTPAFGPATYFVDKCSKIPFFLLSAVIALAFVTIHTFSMVIAFNGYAEGNKVDRYFVPIVHVVAGMLTMVNLAPGGCAVGIPLLYFTAILTLIHCGRMVWRRLTENPIRPSHS*