AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622750 MtrunA17_Chr1g0212921 98.347 121 2 0 1 121 1 121 6.59e-81 233
Msa0622750 MtrunA17_Chr1g0182051 92.500 120 9 0 2 121 3 122 1.26e-74 217
Msa0622750 MtrunA17_Chr4g0030641 91.667 120 10 0 2 121 4 123 1.65e-72 211
Msa0622750 MtrunA17_Chr7g0249361 90.000 120 12 0 2 121 49 168 5.91e-71 209
Msa0622750 MtrunA17_Chr4g0036351 85.124 121 18 0 1 121 1 121 2.14e-67 199
Msa0622750 MtrunA17_Chr1g0206641 87.179 39 5 0 9 47 2 40 1.61e-15 65.5
Msa0622750 MtrunA17_Chr5g0419591 87.879 33 4 0 65 97 2 34 2.20e-13 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622750 AT2G39390.1 88.235 119 14 0 2 120 4 122 4.55e-70 206
Msa0622750 AT3G09500.1 87.395 119 15 0 2 120 4 122 1.24e-68 202
Msa0622750 AT5G02610.1 87.395 119 15 0 2 120 4 122 1.90e-68 202
Msa0622750 AT3G55170.5 85.714 119 17 0 2 120 4 122 4.37e-67 198
Msa0622750 AT3G55170.2 85.714 119 17 0 2 120 4 122 4.37e-67 198
Msa0622750 AT3G55170.1 85.714 119 17 0 2 120 4 122 4.37e-67 198
Msa0622750 AT5G02610.2 73.239 142 15 1 2 120 4 145 9.40e-63 188
Msa0622750 AT3G55170.4 86.458 96 13 0 2 97 4 99 4.94e-52 159
Msa0622750 AT3G55170.3 86.458 96 13 0 2 97 4 99 4.94e-52 159

Find 52 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCTTCAATGTTTAAAAT+TGG 0.152270 4_2:+75474731 Msa0622750:three_prime_UTR
CGAATGGCCCTGGTCTTCTT+TGG 0.171363 4_2:-75473598 None:intergenic
TCAAAGCAGCCTTCTGCTTC+TGG 0.210134 4_2:-75473531 None:intergenic
AGAAAATAATGATAAATAAA+TGG 0.285104 4_2:-75474772 None:intergenic
AATTTGCTTGGGGTATAATA+TGG 0.309101 4_2:+75474795 Msa0622750:three_prime_UTR
CAAAACTTGTCAACTATTAG+AGG 0.334393 4_2:-75474597 None:intergenic
TTGATAGCATATTTCCTCAT+TGG 0.349490 4_2:-75474528 None:intergenic
GAATGGCCCTGGTCTTCTTT+GGG 0.358511 4_2:-75473597 None:intergenic
GACCGAGAGGGAGAAGAAAA+AGG 0.368054 4_2:+75474494 Msa0622750:CDS
TGATAGCATATTTCCTCATT+GGG 0.379576 4_2:-75474527 None:intergenic
AGGGCATCATATCTATCTAT+TGG 0.403617 4_2:+75474564 Msa0622750:three_prime_UTR
CTATCAAGGCATAGGGTTGT+AGG 0.404286 4_2:+75474544 Msa0622750:exon
GTTTCCTTCCTGAAGCTACT+AGG 0.414193 4_2:+75474672 Msa0622750:three_prime_UTR
GAAGCAGAAGGCTGCTTTGA+GGG 0.418273 4_2:+75473534 Msa0622750:CDS
CAAAGCAGCCTTCTGCTTCT+GGG 0.419055 4_2:-75473530 None:intergenic
GAGCCTTCTGCGAATGGCCC+TGG 0.419374 4_2:-75473608 None:intergenic
AAACAGAATAAAGAAAATAC+AGG 0.435732 4_2:-75474631 None:intergenic
CTCCGTGTTGCTAAGGTCAC+TGG 0.447113 4_2:+75473155 Msa0622750:CDS
GTAAAGCAAGTTCAGCTTTG+AGG 0.452854 4_2:-75473133 None:intergenic
CTTGGTGAGCCTTCTGCGAA+TGG 0.472202 4_2:-75473614 None:intergenic
AATGAGGAAATATGCTATCA+AGG 0.472756 4_2:+75474530 Msa0622750:CDS
TGCTTTACTCCGTGTTGCTA+AGG 0.473685 4_2:+75473148 Msa0622750:CDS
ATATGGTCGATCTCACTTGA+AGG 0.487544 4_2:+75474812 Msa0622750:three_prime_UTR
GAAATATGCTATCAAGGCAT+AGG 0.504384 4_2:+75474536 Msa0622750:CDS
AGTCTTGGTTCCTTTGTTAG+CGG 0.510513 4_2:-75474868 None:intergenic
AGGGTTTAATACCTGGTGCT+TGG 0.515451 4_2:-75473632 None:intergenic
CAGTGAAGGTTCACGAGTTG+AGG 0.518240 4_2:+75473072 Msa0622750:intron
ATCTCCGCCCAAAGAAGACC+AGG 0.531518 4_2:+75473590 Msa0622750:CDS
GTCGATCTCACTTGAAGGGA+AGG 0.531578 4_2:+75474817 Msa0622750:three_prime_UTR
CAGAAGGCTCACCAAGCACC+AGG 0.535404 4_2:+75473621 Msa0622750:CDS
CTGCAGAAGAATTCAACAAT+GGG 0.536601 4_2:+75472955 Msa0622750:exon
TATCAAGGCATAGGGTTGTA+GGG 0.546897 4_2:+75474545 Msa0622750:exon
TTCTTTGGGCGGAGATCAAG+TGG 0.553377 4_2:-75473583 None:intergenic
GGTGAGGTTGTCGATTGCTC+AGG 0.570678 4_2:+75473492 Msa0622750:CDS
TGGCCCTGGTCTTCTTTGGG+CGG 0.571866 4_2:-75473594 None:intergenic
AAATATGCTATCAAGGCATA+GGG 0.572355 4_2:+75474537 Msa0622750:CDS
AGAAGCAGAAGGCTGCTTTG+AGG 0.576045 4_2:+75473533 Msa0622750:CDS
TATGGTCGATCTCACTTGAA+GGG 0.577623 4_2:+75474813 Msa0622750:three_prime_UTR
AGACCAGGGCCATTCGCAGA+AGG 0.591558 4_2:+75473605 Msa0622750:CDS
AACAGAATAAAGAAAATACA+GGG 0.606344 4_2:-75474630 None:intergenic
AGGAGACATATTTCCCAATG+AGG 0.613250 4_2:+75474514 Msa0622750:CDS
AGTGATTTCCCAGAAGCAGA+AGG 0.617415 4_2:+75473522 Msa0622750:CDS
CACCAGTGACCTTAGCAACA+CGG 0.624056 4_2:-75473157 None:intergenic
ACATTTAAAACCGCTAACAA+AGG 0.629922 4_2:+75474858 Msa0622750:three_prime_UTR
GCTGCAGAAGAATTCAACAA+TGG 0.630743 4_2:+75472954 Msa0622750:exon
TCGATCTCACTTGAAGGGAA+GGG 0.631667 4_2:+75474818 Msa0622750:three_prime_UTR
AAATCCTAGTAGCTTCAGGA+AGG 0.634941 4_2:-75474676 None:intergenic
GTCTTCGCTGAAGACCGAGA+GGG 0.684722 4_2:+75474482 Msa0622750:intron
CGTGTTGCTAAGGTCACTGG+TGG 0.692805 4_2:+75473158 Msa0622750:CDS
TCTCCGCCCAAAGAAGACCA+GGG 0.718890 4_2:+75473591 Msa0622750:CDS
AGTCTTCGCTGAAGACCGAG+AGG 0.727322 4_2:+75474481 Msa0622750:intron
ACAGAATAAAGAAAATACAG+GGG 0.741158 4_2:-75474629 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAATTTTTATTTACATTT+TGG - chr4_2:75473201-75473220 None:intergenic 10.0%
!!! TTGTTTTTGATTATTTTATT+TGG + chr4_2:75473454-75473473 Msa0622750:intron 10.0%
!!! TGTTTTTGATTATTTTATTT+GGG + chr4_2:75473455-75473474 Msa0622750:intron 10.0%
!! AGAAAATAATGATAAATAAA+TGG - chr4_2:75474775-75474794 None:intergenic 10.0%
!!! TTGAATTTTTATTTACATTT+TGG - chr4_2:75473201-75473220 None:intergenic 10.0%
!!! TTGTTTTTGATTATTTTATT+TGG + chr4_2:75473454-75473473 Msa0622750:intron 10.0%
!!! TGTTTTTGATTATTTTATTT+GGG + chr4_2:75473455-75473474 Msa0622750:intron 10.0%
!! AGAAAATAATGATAAATAAA+TGG - chr4_2:75474775-75474794 None:intergenic 10.0%
!! ACATGAATTATACATTAAAA+GGG - chr4_2:75473654-75473673 None:intergenic 15.0%
!! AACATGAATTATACATTAAA+AGG - chr4_2:75473655-75473674 None:intergenic 15.0%
!! AAATTTCAGTTTGTATATAT+AGG - chr4_2:75474384-75474403 None:intergenic 15.0%
!! ACATGAATTATACATTAAAA+GGG - chr4_2:75473654-75473673 None:intergenic 15.0%
!! AACATGAATTATACATTAAA+AGG - chr4_2:75473655-75473674 None:intergenic 15.0%
!! AAATTTCAGTTTGTATATAT+AGG - chr4_2:75474384-75474403 None:intergenic 15.0%
!!! TTGTTTGATTTCAGAAATTA+GGG - chr4_2:75472998-75473017 None:intergenic 20.0%
!!! TTTGTTTGATTTCAGAAATT+AGG - chr4_2:75472999-75473018 None:intergenic 20.0%
!!! CTTTATTCTTTTATGTCAAT+TGG + chr4_2:75473222-75473241 Msa0622750:intron 20.0%
!! GAATGAAATCTTAAATAATG+AGG + chr4_2:75473956-75473975 Msa0622750:intron 20.0%
!!! AGTTTTCTTTCTAAAATCAA+AGG + chr4_2:75474055-75474074 Msa0622750:intron 20.0%
!!! ACATTCAATTTTATGCTTTA+AGG - chr4_2:75474142-75474161 None:intergenic 20.0%
!! TAGTGAATTTCATGTAAAAA+TGG - chr4_2:75474171-75474190 None:intergenic 20.0%
!! TTAGAAGATAATAACTAGAT+TGG + chr4_2:75474224-75474243 Msa0622750:intron 20.0%
!! AACAGAATAAAGAAAATACA+GGG - chr4_2:75474633-75474652 None:intergenic 20.0%
!! AAACAGAATAAAGAAAATAC+AGG - chr4_2:75474634-75474653 None:intergenic 20.0%
!!! TCATTATTTTCTAATTTGCT+TGG + chr4_2:75474783-75474802 Msa0622750:three_prime_UTR 20.0%
!!! CATTATTTTCTAATTTGCTT+GGG + chr4_2:75474784-75474803 Msa0622750:three_prime_UTR 20.0%
!!! ATTATTTTCTAATTTGCTTG+GGG + chr4_2:75474785-75474804 Msa0622750:three_prime_UTR 20.0%
!!! TTGTTTGATTTCAGAAATTA+GGG - chr4_2:75472998-75473017 None:intergenic 20.0%
!!! TTTGTTTGATTTCAGAAATT+AGG - chr4_2:75472999-75473018 None:intergenic 20.0%
!!! CTTTATTCTTTTATGTCAAT+TGG + chr4_2:75473222-75473241 Msa0622750:intron 20.0%
!! GAATGAAATCTTAAATAATG+AGG + chr4_2:75473956-75473975 Msa0622750:intron 20.0%
!!! AGTTTTCTTTCTAAAATCAA+AGG + chr4_2:75474055-75474074 Msa0622750:intron 20.0%
!!! ACATTCAATTTTATGCTTTA+AGG - chr4_2:75474142-75474161 None:intergenic 20.0%
!! TAGTGAATTTCATGTAAAAA+TGG - chr4_2:75474171-75474190 None:intergenic 20.0%
!! TTAGAAGATAATAACTAGAT+TGG + chr4_2:75474224-75474243 Msa0622750:intron 20.0%
!! AACAGAATAAAGAAAATACA+GGG - chr4_2:75474633-75474652 None:intergenic 20.0%
!! AAACAGAATAAAGAAAATAC+AGG - chr4_2:75474634-75474653 None:intergenic 20.0%
!!! TCATTATTTTCTAATTTGCT+TGG + chr4_2:75474783-75474802 Msa0622750:three_prime_UTR 20.0%
!!! CATTATTTTCTAATTTGCTT+GGG + chr4_2:75474784-75474803 Msa0622750:three_prime_UTR 20.0%
!!! ATTATTTTCTAATTTGCTTG+GGG + chr4_2:75474785-75474804 Msa0622750:three_prime_UTR 20.0%
!!! GTGATCTTTGTTCTAAAATA+AGG - chr4_2:75473278-75473297 None:intergenic 25.0%
! AACAATTTATCCTTCAGAAT+TGG - chr4_2:75473336-75473355 None:intergenic 25.0%
! TGATTGTGTGATGATTATAA+TGG + chr4_2:75473375-75473394 Msa0622750:intron 25.0%
! GATTGTGTGATGATTATAAT+GGG + chr4_2:75473376-75473395 Msa0622750:intron 25.0%
! CTTTCAAGGATAACATTTAA+TGG - chr4_2:75474099-75474118 None:intergenic 25.0%
! TGATTATTACTGTTCTTTCA+AGG - chr4_2:75474113-75474132 None:intergenic 25.0%
!!! TAACTAGATTGGTTTATTGT+TGG + chr4_2:75474235-75474254 Msa0622750:intron 25.0%
! ACAGAATAAAGAAAATACAG+GGG - chr4_2:75474632-75474651 None:intergenic 25.0%
!! CATTTTTATCATACTCATTG+CGG + chr4_2:75474703-75474722 Msa0622750:three_prime_UTR 25.0%
!! GTCTCTTCAATGTTTAAAAT+TGG + chr4_2:75474731-75474750 Msa0622750:three_prime_UTR 25.0%
!!! GTGATCTTTGTTCTAAAATA+AGG - chr4_2:75473278-75473297 None:intergenic 25.0%
! AACAATTTATCCTTCAGAAT+TGG - chr4_2:75473336-75473355 None:intergenic 25.0%
! TGATTGTGTGATGATTATAA+TGG + chr4_2:75473375-75473394 Msa0622750:intron 25.0%
! GATTGTGTGATGATTATAAT+GGG + chr4_2:75473376-75473395 Msa0622750:intron 25.0%
! CTTTCAAGGATAACATTTAA+TGG - chr4_2:75474099-75474118 None:intergenic 25.0%
! TGATTATTACTGTTCTTTCA+AGG - chr4_2:75474113-75474132 None:intergenic 25.0%
!!! TAACTAGATTGGTTTATTGT+TGG + chr4_2:75474235-75474254 Msa0622750:intron 25.0%
! ACAGAATAAAGAAAATACAG+GGG - chr4_2:75474632-75474651 None:intergenic 25.0%
!! CATTTTTATCATACTCATTG+CGG + chr4_2:75474703-75474722 Msa0622750:three_prime_UTR 25.0%
!! GTCTCTTCAATGTTTAAAAT+TGG + chr4_2:75474731-75474750 Msa0622750:three_prime_UTR 25.0%
! TTTGATTTCAGAAATTAGGG+TGG - chr4_2:75472995-75473014 None:intergenic 30.0%
TATCCTTCAGAATTGGTAAA+TGG - chr4_2:75473329-75473348 None:intergenic 30.0%
GAAGGATAAATTGTTCCTTT+CGG + chr4_2:75473341-75473360 Msa0622750:intron 30.0%
!!! GTTTTTGTTTTGTGACTGTA+AGG + chr4_2:75473401-75473420 Msa0622750:intron 30.0%
!! TTTATTTGGGTTTTGCAGTA+AGG + chr4_2:75473468-75473487 Msa0622750:intron 30.0%
CATTAAAAGGGTTTAATACC+TGG - chr4_2:75473642-75473661 None:intergenic 30.0%
AATTCAATGTATGTCAAGAC+AGG - chr4_2:75473876-75473895 None:intergenic 30.0%
! GATCTGTATCATTTGGAATA+AGG - chr4_2:75473993-75474012 None:intergenic 30.0%
AGGATAACATTTAATGGTGT+AGG - chr4_2:75474093-75474112 None:intergenic 30.0%
! ATTATAGCCTTTTACACCAT+TGG + chr4_2:75474263-75474282 Msa0622750:intron 30.0%
AAAACAACCAATGGTGTAAA+AGG - chr4_2:75474273-75474292 None:intergenic 30.0%
!! TTTTCAACCTGATTTGTCTT+GGG + chr4_2:75474289-75474308 Msa0622750:intron 30.0%
ACATACAAGCAAAGAGAAAA+AGG - chr4_2:75474352-75474371 None:intergenic 30.0%
TGATAGCATATTTCCTCATT+GGG - chr4_2:75474530-75474549 None:intergenic 30.0%
! TTGATAGCATATTTCCTCAT+TGG - chr4_2:75474531-75474550 None:intergenic 30.0%
AATGAGGAAATATGCTATCA+AGG + chr4_2:75474530-75474549 Msa0622750:CDS 30.0%
AAATATGCTATCAAGGCATA+GGG + chr4_2:75474537-75474556 Msa0622750:CDS 30.0%
CAAAACTTGTCAACTATTAG+AGG - chr4_2:75474600-75474619 None:intergenic 30.0%
! AATTTGCTTGGGGTATAATA+TGG + chr4_2:75474795-75474814 Msa0622750:three_prime_UTR 30.0%
! ACATTTAAAACCGCTAACAA+AGG + chr4_2:75474858-75474877 Msa0622750:three_prime_UTR 30.0%
! TTTGATTTCAGAAATTAGGG+TGG - chr4_2:75472995-75473014 None:intergenic 30.0%
TATCCTTCAGAATTGGTAAA+TGG - chr4_2:75473329-75473348 None:intergenic 30.0%
GAAGGATAAATTGTTCCTTT+CGG + chr4_2:75473341-75473360 Msa0622750:intron 30.0%
!!! GTTTTTGTTTTGTGACTGTA+AGG + chr4_2:75473401-75473420 Msa0622750:intron 30.0%
!! TTTATTTGGGTTTTGCAGTA+AGG + chr4_2:75473468-75473487 Msa0622750:intron 30.0%
CATTAAAAGGGTTTAATACC+TGG - chr4_2:75473642-75473661 None:intergenic 30.0%
AATTCAATGTATGTCAAGAC+AGG - chr4_2:75473876-75473895 None:intergenic 30.0%
! GATCTGTATCATTTGGAATA+AGG - chr4_2:75473993-75474012 None:intergenic 30.0%
AGGATAACATTTAATGGTGT+AGG - chr4_2:75474093-75474112 None:intergenic 30.0%
! ATTATAGCCTTTTACACCAT+TGG + chr4_2:75474263-75474282 Msa0622750:intron 30.0%
AAAACAACCAATGGTGTAAA+AGG - chr4_2:75474273-75474292 None:intergenic 30.0%
!! TTTTCAACCTGATTTGTCTT+GGG + chr4_2:75474289-75474308 Msa0622750:intron 30.0%
ACATACAAGCAAAGAGAAAA+AGG - chr4_2:75474352-75474371 None:intergenic 30.0%
TGATAGCATATTTCCTCATT+GGG - chr4_2:75474530-75474549 None:intergenic 30.0%
! TTGATAGCATATTTCCTCAT+TGG - chr4_2:75474531-75474550 None:intergenic 30.0%
AATGAGGAAATATGCTATCA+AGG + chr4_2:75474530-75474549 Msa0622750:CDS 30.0%
AAATATGCTATCAAGGCATA+GGG + chr4_2:75474537-75474556 Msa0622750:CDS 30.0%
CAAAACTTGTCAACTATTAG+AGG - chr4_2:75474600-75474619 None:intergenic 30.0%
! AATTTGCTTGGGGTATAATA+TGG + chr4_2:75474795-75474814 Msa0622750:three_prime_UTR 30.0%
! ACATTTAAAACCGCTAACAA+AGG + chr4_2:75474858-75474877 Msa0622750:three_prime_UTR 30.0%
! TGATTTTGTAGTAAGCTGCT+AGG + chr4_2:75472901-75472920 Msa0622750:five_prime_UTR 35.0%
! GATTTTGTAGTAAGCTGCTA+GGG + chr4_2:75472902-75472921 Msa0622750:five_prime_UTR 35.0%
CTGCAGAAGAATTCAACAAT+GGG + chr4_2:75472955-75472974 Msa0622750:exon 35.0%
TCAGAAATTAGGGTGGTTTA+GGG - chr4_2:75472988-75473007 None:intergenic 35.0%
TTCAGAAATTAGGGTGGTTT+AGG - chr4_2:75472989-75473008 None:intergenic 35.0%
!!! TGTGTTTTGATTTGCAGTGA+AGG + chr4_2:75473058-75473077 Msa0622750:intron 35.0%
GAAAAACAAAGCTGATCTGT+TGG + chr4_2:75473097-75473116 Msa0622750:CDS 35.0%
!! TACATTTTGGAGAGCTTGTT+GGG - chr4_2:75473188-75473207 None:intergenic 35.0%
!! TTACATTTTGGAGAGCTTGT+TGG - chr4_2:75473189-75473208 None:intergenic 35.0%
!! AATTGGTGCTATGATCGTAA+AGG + chr4_2:75473239-75473258 Msa0622750:intron 35.0%
! AATTGTTCCTTTCGGTGTAA+TGG + chr4_2:75473349-75473368 Msa0622750:intron 35.0%
!!! TTTGTTTTGTGACTGTAAGG+TGG + chr4_2:75473404-75473423 Msa0622750:intron 35.0%
GCAAAAACCACAGATACATT+GGG - chr4_2:75473707-75473726 None:intergenic 35.0%
AGCAAAAACCACAGATACAT+TGG - chr4_2:75473708-75473727 None:intergenic 35.0%
TATTGTGACCATCCATCAAT+TGG + chr4_2:75473786-75473805 Msa0622750:intron 35.0%
ATACACCAATCACCAATTGA+TGG - chr4_2:75473801-75473820 None:intergenic 35.0%
AGTCGTCTCAAGTACTATTT+AGG + chr4_2:75473924-75473943 Msa0622750:intron 35.0%
!! ATCAGGTTGAAAACAACCAA+TGG - chr4_2:75474282-75474301 None:intergenic 35.0%
!! GTTTTCAACCTGATTTGTCT+TGG + chr4_2:75474288-75474307 Msa0622750:intron 35.0%
TGAATATCCCAAGACAAATC+AGG - chr4_2:75474299-75474318 None:intergenic 35.0%
GCAAAGAGAAAAAGGTTACA+AGG - chr4_2:75474344-75474363 None:intergenic 35.0%
TTCAAGCAGAACAGTATGTT+TGG + chr4_2:75474424-75474443 Msa0622750:intron 35.0%
GAAATATGCTATCAAGGCAT+AGG + chr4_2:75474536-75474555 Msa0622750:CDS 35.0%
! AGGGCATCATATCTATCTAT+TGG + chr4_2:75474564-75474583 Msa0622750:three_prime_UTR 35.0%
! GTTTTTCTTTATCAGACTCG+AGG + chr4_2:75474650-75474669 Msa0622750:three_prime_UTR 35.0%
CAAAAAATCCTAGTAGCTTC+AGG - chr4_2:75474683-75474702 None:intergenic 35.0%
GCAGCTTACTACAAAATCAA+TGG - chr4_2:75472900-75472919 None:intergenic 35.0%
! TGATTTTGTAGTAAGCTGCT+AGG + chr4_2:75472901-75472920 Msa0622750:five_prime_UTR 35.0%
! GATTTTGTAGTAAGCTGCTA+GGG + chr4_2:75472902-75472921 Msa0622750:five_prime_UTR 35.0%
CTGCAGAAGAATTCAACAAT+GGG + chr4_2:75472955-75472974 Msa0622750:exon 35.0%
TCAGAAATTAGGGTGGTTTA+GGG - chr4_2:75472988-75473007 None:intergenic 35.0%
TTCAGAAATTAGGGTGGTTT+AGG - chr4_2:75472989-75473008 None:intergenic 35.0%
!!! TGTGTTTTGATTTGCAGTGA+AGG + chr4_2:75473058-75473077 Msa0622750:intron 35.0%
GAAAAACAAAGCTGATCTGT+TGG + chr4_2:75473097-75473116 Msa0622750:CDS 35.0%
!! TACATTTTGGAGAGCTTGTT+GGG - chr4_2:75473188-75473207 None:intergenic 35.0%
!! TTACATTTTGGAGAGCTTGT+TGG - chr4_2:75473189-75473208 None:intergenic 35.0%
!! AATTGGTGCTATGATCGTAA+AGG + chr4_2:75473239-75473258 Msa0622750:intron 35.0%
! AATTGTTCCTTTCGGTGTAA+TGG + chr4_2:75473349-75473368 Msa0622750:intron 35.0%
!!! TTTGTTTTGTGACTGTAAGG+TGG + chr4_2:75473404-75473423 Msa0622750:intron 35.0%
GCAAAAACCACAGATACATT+GGG - chr4_2:75473707-75473726 None:intergenic 35.0%
AGCAAAAACCACAGATACAT+TGG - chr4_2:75473708-75473727 None:intergenic 35.0%
TATTGTGACCATCCATCAAT+TGG + chr4_2:75473786-75473805 Msa0622750:intron 35.0%
ATACACCAATCACCAATTGA+TGG - chr4_2:75473801-75473820 None:intergenic 35.0%
AGTCGTCTCAAGTACTATTT+AGG + chr4_2:75473924-75473943 Msa0622750:intron 35.0%
!! ATCAGGTTGAAAACAACCAA+TGG - chr4_2:75474282-75474301 None:intergenic 35.0%
!! GTTTTCAACCTGATTTGTCT+TGG + chr4_2:75474288-75474307 Msa0622750:intron 35.0%
TGAATATCCCAAGACAAATC+AGG - chr4_2:75474299-75474318 None:intergenic 35.0%
GCAAAGAGAAAAAGGTTACA+AGG - chr4_2:75474344-75474363 None:intergenic 35.0%
TTCAAGCAGAACAGTATGTT+TGG + chr4_2:75474424-75474443 Msa0622750:intron 35.0%
GAAATATGCTATCAAGGCAT+AGG + chr4_2:75474536-75474555 Msa0622750:CDS 35.0%
! AGGGCATCATATCTATCTAT+TGG + chr4_2:75474564-75474583 Msa0622750:three_prime_UTR 35.0%
! GTTTTTCTTTATCAGACTCG+AGG + chr4_2:75474650-75474669 Msa0622750:three_prime_UTR 35.0%
CAAAAAATCCTAGTAGCTTC+AGG - chr4_2:75474683-75474702 None:intergenic 35.0%
GCTGCAGAAGAATTCAACAA+TGG + chr4_2:75472954-75472973 Msa0622750:exon 40.0%
GTAAAGCAAGTTCAGCTTTG+AGG - chr4_2:75473136-75473155 None:intergenic 40.0%
CGTCCATTTACCAATTCTGA+AGG + chr4_2:75473323-75473342 Msa0622750:intron 40.0%
ATCAAAGCCATTACACCGAA+AGG - chr4_2:75473359-75473378 None:intergenic 40.0%
!! ATTTGGGTTTTGCAGTAAGG+TGG + chr4_2:75473471-75473490 Msa0622750:intron 40.0%
AAAACCACAGATACATTGGG+AGG - chr4_2:75473704-75473723 None:intergenic 40.0%
! ACCATCCATCAATTGGTGAT+TGG + chr4_2:75473793-75473812 Msa0622750:intron 40.0%
ACCAATCACCAATTGATGGA+TGG - chr4_2:75473797-75473816 None:intergenic 40.0%
ATGAAATTCACTACACGACC+AGG + chr4_2:75474178-75474197 Msa0622750:intron 40.0%
CAGAAAATTGTACAGCAACC+TGG - chr4_2:75474199-75474218 None:intergenic 40.0%
AGGAGACATATTTCCCAATG+AGG + chr4_2:75474514-75474533 Msa0622750:CDS 40.0%
TATCAAGGCATAGGGTTGTA+GGG + chr4_2:75474545-75474564 Msa0622750:exon 40.0%
AAATCCTAGTAGCTTCAGGA+AGG - chr4_2:75474679-75474698 None:intergenic 40.0%
ATATGGTCGATCTCACTTGA+AGG + chr4_2:75474812-75474831 Msa0622750:three_prime_UTR 40.0%
TATGGTCGATCTCACTTGAA+GGG + chr4_2:75474813-75474832 Msa0622750:three_prime_UTR 40.0%
GCTGCAGAAGAATTCAACAA+TGG + chr4_2:75472954-75472973 Msa0622750:exon 40.0%
GTAAAGCAAGTTCAGCTTTG+AGG - chr4_2:75473136-75473155 None:intergenic 40.0%
CGTCCATTTACCAATTCTGA+AGG + chr4_2:75473323-75473342 Msa0622750:intron 40.0%
ATCAAAGCCATTACACCGAA+AGG - chr4_2:75473359-75473378 None:intergenic 40.0%
!! ATTTGGGTTTTGCAGTAAGG+TGG + chr4_2:75473471-75473490 Msa0622750:intron 40.0%
AAAACCACAGATACATTGGG+AGG - chr4_2:75473704-75473723 None:intergenic 40.0%
! ACCATCCATCAATTGGTGAT+TGG + chr4_2:75473793-75473812 Msa0622750:intron 40.0%
ACCAATCACCAATTGATGGA+TGG - chr4_2:75473797-75473816 None:intergenic 40.0%
ATGAAATTCACTACACGACC+AGG + chr4_2:75474178-75474197 Msa0622750:intron 40.0%
CAGAAAATTGTACAGCAACC+TGG - chr4_2:75474199-75474218 None:intergenic 40.0%
AGGAGACATATTTCCCAATG+AGG + chr4_2:75474514-75474533 Msa0622750:CDS 40.0%
TATCAAGGCATAGGGTTGTA+GGG + chr4_2:75474545-75474564 Msa0622750:exon 40.0%
AAATCCTAGTAGCTTCAGGA+AGG - chr4_2:75474679-75474698 None:intergenic 40.0%
ATATGGTCGATCTCACTTGA+AGG + chr4_2:75474812-75474831 Msa0622750:three_prime_UTR 40.0%
TATGGTCGATCTCACTTGAA+GGG + chr4_2:75474813-75474832 Msa0622750:three_prime_UTR 40.0%
! TGCTTTACTCCGTGTTGCTA+AGG + chr4_2:75473148-75473167 Msa0622750:CDS 45.0%
AGTGATTTCCCAGAAGCAGA+AGG + chr4_2:75473522-75473541 Msa0622750:CDS 45.0%
AGGGTTTAATACCTGGTGCT+TGG - chr4_2:75473635-75473654 None:intergenic 45.0%
TACACCTCCCAATGTATCTG+TGG + chr4_2:75473697-75473716 Msa0622750:intron 45.0%
CCTGCAGGATCTGTATCATT+TGG - chr4_2:75474000-75474019 None:intergenic 45.0%
CCAAATGATACAGATCCTGC+AGG + chr4_2:75473997-75474016 Msa0622750:intron 45.0%
ATACAGATCCTGCAGGTGTA+GGG + chr4_2:75474004-75474023 Msa0622750:intron 45.0%
! CTCCTTTTTCTTCTCCCTCT+CGG - chr4_2:75474499-75474518 None:intergenic 45.0%
CTATCAAGGCATAGGGTTGT+AGG + chr4_2:75474544-75474563 Msa0622750:exon 45.0%
GTTTCCTTCCTGAAGCTACT+AGG + chr4_2:75474672-75474691 Msa0622750:three_prime_UTR 45.0%
TCGATCTCACTTGAAGGGAA+GGG + chr4_2:75474818-75474837 Msa0622750:three_prime_UTR 45.0%
! TGCTTTACTCCGTGTTGCTA+AGG + chr4_2:75473148-75473167 Msa0622750:CDS 45.0%
AGTGATTTCCCAGAAGCAGA+AGG + chr4_2:75473522-75473541 Msa0622750:CDS 45.0%
AGGGTTTAATACCTGGTGCT+TGG - chr4_2:75473635-75473654 None:intergenic 45.0%
TACACCTCCCAATGTATCTG+TGG + chr4_2:75473697-75473716 Msa0622750:intron 45.0%
CCTGCAGGATCTGTATCATT+TGG - chr4_2:75474000-75474019 None:intergenic 45.0%
CCAAATGATACAGATCCTGC+AGG + chr4_2:75473997-75474016 Msa0622750:intron 45.0%
ATACAGATCCTGCAGGTGTA+GGG + chr4_2:75474004-75474023 Msa0622750:intron 45.0%
! CTCCTTTTTCTTCTCCCTCT+CGG - chr4_2:75474499-75474518 None:intergenic 45.0%
CTATCAAGGCATAGGGTTGT+AGG + chr4_2:75474544-75474563 Msa0622750:exon 45.0%
GTTTCCTTCCTGAAGCTACT+AGG + chr4_2:75474672-75474691 Msa0622750:three_prime_UTR 45.0%
TCGATCTCACTTGAAGGGAA+GGG + chr4_2:75474818-75474837 Msa0622750:three_prime_UTR 45.0%
GTTTACACACACACACGCAG+AGG + chr4_2:75472924-75472943 Msa0622750:five_prime_UTR 50.0%
CAGTGAAGGTTCACGAGTTG+AGG + chr4_2:75473072-75473091 Msa0622750:intron 50.0%
CACCAGTGACCTTAGCAACA+CGG - chr4_2:75473160-75473179 None:intergenic 50.0%
! GGTTTTGCAGTAAGGTGGTG+AGG + chr4_2:75473476-75473495 Msa0622750:intron 50.0%
CAAAGCAGCCTTCTGCTTCT+GGG - chr4_2:75473533-75473552 None:intergenic 50.0%
TCAAAGCAGCCTTCTGCTTC+TGG - chr4_2:75473534-75473553 None:intergenic 50.0%
! AGAAGCAGAAGGCTGCTTTG+AGG + chr4_2:75473533-75473552 Msa0622750:CDS 50.0%
! GAAGCAGAAGGCTGCTTTGA+GGG + chr4_2:75473534-75473553 Msa0622750:CDS 50.0%
TTCTTTGGGCGGAGATCAAG+TGG - chr4_2:75473586-75473605 None:intergenic 50.0%
! GAATGGCCCTGGTCTTCTTT+GGG - chr4_2:75473600-75473619 None:intergenic 50.0%
GATACAGATCCTGCAGGTGT+AGG + chr4_2:75474003-75474022 Msa0622750:intron 50.0%
GACCGAGAGGGAGAAGAAAA+AGG + chr4_2:75474494-75474513 Msa0622750:CDS 50.0%
GTCGATCTCACTTGAAGGGA+AGG + chr4_2:75474817-75474836 Msa0622750:three_prime_UTR 50.0%
GTTTACACACACACACGCAG+AGG + chr4_2:75472924-75472943 Msa0622750:five_prime_UTR 50.0%
CAGTGAAGGTTCACGAGTTG+AGG + chr4_2:75473072-75473091 Msa0622750:intron 50.0%
CACCAGTGACCTTAGCAACA+CGG - chr4_2:75473160-75473179 None:intergenic 50.0%
! GGTTTTGCAGTAAGGTGGTG+AGG + chr4_2:75473476-75473495 Msa0622750:intron 50.0%
CAAAGCAGCCTTCTGCTTCT+GGG - chr4_2:75473533-75473552 None:intergenic 50.0%
TCAAAGCAGCCTTCTGCTTC+TGG - chr4_2:75473534-75473553 None:intergenic 50.0%
! AGAAGCAGAAGGCTGCTTTG+AGG + chr4_2:75473533-75473552 Msa0622750:CDS 50.0%
! GAAGCAGAAGGCTGCTTTGA+GGG + chr4_2:75473534-75473553 Msa0622750:CDS 50.0%
TTCTTTGGGCGGAGATCAAG+TGG - chr4_2:75473586-75473605 None:intergenic 50.0%
! GAATGGCCCTGGTCTTCTTT+GGG - chr4_2:75473600-75473619 None:intergenic 50.0%
GATACAGATCCTGCAGGTGT+AGG + chr4_2:75474003-75474022 Msa0622750:intron 50.0%
GACCGAGAGGGAGAAGAAAA+AGG + chr4_2:75474494-75474513 Msa0622750:CDS 50.0%
GTCGATCTCACTTGAAGGGA+AGG + chr4_2:75474817-75474836 Msa0622750:three_prime_UTR 50.0%
! CTCCGTGTTGCTAAGGTCAC+TGG + chr4_2:75473155-75473174 Msa0622750:CDS 55.0%
! CGTGTTGCTAAGGTCACTGG+TGG + chr4_2:75473158-75473177 Msa0622750:CDS 55.0%
! GGTGAGGTTGTCGATTGCTC+AGG + chr4_2:75473492-75473511 Msa0622750:CDS 55.0%
ATCTCCGCCCAAAGAAGACC+AGG + chr4_2:75473590-75473609 Msa0622750:CDS 55.0%
TCTCCGCCCAAAGAAGACCA+GGG + chr4_2:75473591-75473610 Msa0622750:CDS 55.0%
! CGAATGGCCCTGGTCTTCTT+TGG - chr4_2:75473601-75473620 None:intergenic 55.0%
CTTGGTGAGCCTTCTGCGAA+TGG - chr4_2:75473617-75473636 None:intergenic 55.0%
ATCCTGCAGGTGTAGGGAGA+AGG + chr4_2:75474010-75474029 Msa0622750:intron 55.0%
ATCCTTCTCCCTACACCTGC+AGG - chr4_2:75474015-75474034 None:intergenic 55.0%
AGTCTTCGCTGAAGACCGAG+AGG + chr4_2:75474481-75474500 Msa0622750:intron 55.0%
GTCTTCGCTGAAGACCGAGA+GGG + chr4_2:75474482-75474501 Msa0622750:intron 55.0%
! CTCCGTGTTGCTAAGGTCAC+TGG + chr4_2:75473155-75473174 Msa0622750:CDS 55.0%
! CGTGTTGCTAAGGTCACTGG+TGG + chr4_2:75473158-75473177 Msa0622750:CDS 55.0%
! GGTGAGGTTGTCGATTGCTC+AGG + chr4_2:75473492-75473511 Msa0622750:CDS 55.0%
ATCTCCGCCCAAAGAAGACC+AGG + chr4_2:75473590-75473609 Msa0622750:CDS 55.0%
TCTCCGCCCAAAGAAGACCA+GGG + chr4_2:75473591-75473610 Msa0622750:CDS 55.0%
! CGAATGGCCCTGGTCTTCTT+TGG - chr4_2:75473601-75473620 None:intergenic 55.0%
CTTGGTGAGCCTTCTGCGAA+TGG - chr4_2:75473617-75473636 None:intergenic 55.0%
ATCCTGCAGGTGTAGGGAGA+AGG + chr4_2:75474010-75474029 Msa0622750:intron 55.0%
ATCCTTCTCCCTACACCTGC+AGG - chr4_2:75474015-75474034 None:intergenic 55.0%
AGTCTTCGCTGAAGACCGAG+AGG + chr4_2:75474481-75474500 Msa0622750:intron 55.0%
GTCTTCGCTGAAGACCGAGA+GGG + chr4_2:75474482-75474501 Msa0622750:intron 55.0%
! TGGCCCTGGTCTTCTTTGGG+CGG - chr4_2:75473597-75473616 None:intergenic 60.0%
AGACCAGGGCCATTCGCAGA+AGG + chr4_2:75473605-75473624 Msa0622750:CDS 60.0%
CAGAAGGCTCACCAAGCACC+AGG + chr4_2:75473621-75473640 Msa0622750:CDS 60.0%
! TGGCCCTGGTCTTCTTTGGG+CGG - chr4_2:75473597-75473616 None:intergenic 60.0%
AGACCAGGGCCATTCGCAGA+AGG + chr4_2:75473605-75473624 Msa0622750:CDS 60.0%
CAGAAGGCTCACCAAGCACC+AGG + chr4_2:75473621-75473640 Msa0622750:CDS 60.0%
GAGCCTTCTGCGAATGGCCC+TGG - chr4_2:75473611-75473630 None:intergenic 65.0%
GAGCCTTCTGCGAATGGCCC+TGG - chr4_2:75473611-75473630 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 75472899 75474884 75472899 ID=Msa0622750;Name=Msa0622750
chr4_2 mRNA 75472899 75474884 75472899 ID=Msa0622750-mRNA-1;Parent=Msa0622750;Name=Msa0622750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=74|1|1|1|1|1|4|327|121
chr4_2 exon 75472899 75472976 75472899 ID=Msa0622750-mRNA-1:exon:22873;Parent=Msa0622750-mRNA-1
chr4_2 exon 75473075 75473204 75473075 ID=Msa0622750-mRNA-1:exon:22874;Parent=Msa0622750-mRNA-1
chr4_2 exon 75473486 75473642 75473486 ID=Msa0622750-mRNA-1:exon:22875;Parent=Msa0622750-mRNA-1
chr4_2 exon 75474483 75474884 75474483 ID=Msa0622750-mRNA-1:exon:22876;Parent=Msa0622750-mRNA-1
chr4_2 five_prime_UTR 75472899 75472972 75472899 ID=Msa0622750-mRNA-1:five_prime_utr;Parent=Msa0622750-mRNA-1
chr4_2 CDS 75472973 75472976 75472973 ID=Msa0622750-mRNA-1:cds;Parent=Msa0622750-mRNA-1
chr4_2 CDS 75473075 75473204 75473075 ID=Msa0622750-mRNA-1:cds;Parent=Msa0622750-mRNA-1
chr4_2 CDS 75473486 75473642 75473486 ID=Msa0622750-mRNA-1:cds;Parent=Msa0622750-mRNA-1
chr4_2 CDS 75474483 75474557 75474483 ID=Msa0622750-mRNA-1:cds;Parent=Msa0622750-mRNA-1
chr4_2 three_prime_UTR 75474558 75474884 75474558 ID=Msa0622750-mRNA-1:three_prime_utr;Parent=Msa0622750-mRNA-1
Gene Sequence

>Msa0622750

ATGGTGAAGGTTCACGAGTTGAGGCAGAAAAACAAAGCTGATCTGTTGGCTCAGCTCAAAGACCTCAAAGCTGAACTTGCTTTACTCCGTGTTGCTAAGGTCACTGGTGGTGCACCCAACAAGCTCTCCAAAATTAAGGTGGTGAGGTTGTCGATTGCTCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGTTTACAAGAACAAGAAGTATTTGCCACTTGATCTCCGCCCAAAGAAGACCAGGGCCATTCGCAGAAGGCTCACCAAGCACCAGTCTTCGCTGAAGACCGAGAGGGAGAAGAAAAAGGAGACATATTTCCCAATGAGGAAATATGCTATCAAGGCATAG

Protein sequence

>Msa0622750

MVKVHELRQKNKADLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQSSLKTEREKKKETYFPMRKYAIKA*