Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447090 | A0A396HCI7 | 83.059 | 425 | 25 | 5 | 1 | 379 | 53 | 476 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa1447090 | 0.802675 | 5.013805e-49 | -8.615850e-47 |
| Msa0011720 | Msa1447090 | 0.813106 | 3.028170e-51 | -8.615850e-47 |
| Msa0038350 | Msa1447090 | -0.812054 | 5.141305e-51 | -8.615850e-47 |
| Msa0046310 | Msa1447090 | 0.831339 | 1.765705e-55 | -8.615850e-47 |
| Msa0055590 | Msa1447090 | 0.810011 | 1.424644e-50 | -8.615850e-47 |
| Msa0085250 | Msa1447090 | 0.802957 | 4.384339e-49 | -8.615850e-47 |
| Msa0091770 | Msa1447090 | 0.800684 | 1.284340e-48 | -8.615850e-47 |
| Msa0102750 | Msa1447090 | 0.820841 | 5.543671e-53 | -8.615850e-47 |
| Msa0105340 | Msa1447090 | 0.818017 | 2.440810e-52 | -8.615850e-47 |
| Msa0105420 | Msa1447090 | 0.839431 | 1.591133e-57 | -8.615850e-47 |
| Msa1353530 | Msa1447090 | 0.808685 | 2.742861e-50 | -8.615850e-47 |
| Msa1365040 | Msa1447090 | -0.801112 | 1.050109e-48 | -8.615850e-47 |
| Msa1373950 | Msa1447090 | 0.809243 | 2.083455e-50 | -8.615850e-47 |
| Msa1376890 | Msa1447090 | 0.800389 | 1.474929e-48 | -8.615850e-47 |
| Msa1384350 | Msa1447090 | 0.809699 | 1.663312e-50 | -8.615850e-47 |
| Msa1408790 | Msa1447090 | 0.810466 | 1.136729e-50 | -8.615850e-47 |
| Msa1409520 | Msa1447090 | 0.824432 | 8.096551e-54 | -8.615850e-47 |
| Msa1414740 | Msa1447090 | 0.805140 | 1.541455e-49 | -8.615850e-47 |
| Msa1427760 | Msa1447090 | 0.811094 | 8.311684e-51 | -8.615850e-47 |
| Msa1431000 | Msa1447090 | 0.806425 | 8.278402e-50 | -8.615850e-47 |
| Msa1436040 | Msa1447090 | 0.808125 | 3.612147e-50 | -8.615850e-47 |
| Msa1447090 | Msa1456810 | 0.800866 | 1.178756e-48 | -8.615850e-47 |
| Msa1447090 | Msa1457670 | -0.806614 | 7.550211e-50 | -8.615850e-47 |
| Msa1447090 | Msa1463970 | 0.814562 | 1.446367e-51 | -8.615850e-47 |
| Msa1447090 | Msa1465900 | 0.813615 | 2.340440e-51 | -8.615850e-47 |
| Msa0604360 | Msa1447090 | 0.818984 | 1.473805e-52 | -8.615850e-47 |
| Msa0621890 | Msa1447090 | 0.829501 | 4.969383e-55 | -8.615850e-47 |
| Msa0626230 | Msa1447090 | 0.804786 | 1.827919e-49 | -8.615850e-47 |
| Msa0636180 | Msa1447090 | 0.805452 | 1.326027e-49 | -8.615850e-47 |
| Msa0638320 | Msa1447090 | 0.807247 | 5.547458e-50 | -8.615850e-47 |
| Msa0647130 | Msa1447090 | 0.807245 | 5.552721e-50 | -8.615850e-47 |
| Msa0658570 | Msa1447090 | 0.807305 | 5.394694e-50 | -8.615850e-47 |
| Msa0677270 | Msa1447090 | 0.801197 | 1.008589e-48 | -8.615850e-47 |
| Msa0677400 | Msa1447090 | 0.826437 | 2.714458e-54 | -8.615850e-47 |
| Msa0691020 | Msa1447090 | 0.806831 | 6.793873e-50 | -8.615850e-47 |
| Msa0697140 | Msa1447090 | 0.830271 | 3.226237e-55 | -8.615850e-47 |
| Msa0703490 | Msa1447090 | 0.822949 | 1.801528e-53 | -8.615850e-47 |
| Msa0722930 | Msa1447090 | 0.806281 | 8.878644e-50 | -8.615850e-47 |
| Msa0723140 | Msa1447090 | 0.807174 | 5.750674e-50 | -8.615850e-47 |
| Msa0725480 | Msa1447090 | -0.811101 | 8.285601e-51 | -8.615850e-47 |
| Msa0754720 | Msa1447090 | -0.819427 | 1.167906e-52 | -8.615850e-47 |
| Msa0756630 | Msa1447090 | -0.807557 | 4.770214e-50 | -8.615850e-47 |
| Msa0764700 | Msa1447090 | 0.805844 | 1.096870e-49 | -8.615850e-47 |
| Msa0766100 | Msa1447090 | -0.805444 | 1.330803e-49 | -8.615850e-47 |
| Msa0791070 | Msa1447090 | 0.806613 | 7.554835e-50 | -8.615850e-47 |
| Msa0792510 | Msa1447090 | 0.803159 | 3.982646e-49 | -8.615850e-47 |
| Msa0801020 | Msa1447090 | 0.831988 | 1.221734e-55 | -8.615850e-47 |
| Msa0837990 | Msa1447090 | 0.808553 | 2.926821e-50 | -8.615850e-47 |
| Msa0151690 | Msa1447090 | 0.801721 | 7.876092e-49 | -8.615850e-47 |
| Msa0189950 | Msa1447090 | 0.800815 | 1.207539e-48 | -8.615850e-47 |
| Msa0190830 | Msa1447090 | 0.805167 | 1.521114e-49 | -8.615850e-47 |
| Msa0193650 | Msa1447090 | 0.833139 | 6.331209e-56 | -8.615850e-47 |
| Msa0193920 | Msa1447090 | 0.827319 | 1.670623e-54 | -8.615850e-47 |
| Msa0203640 | Msa1447090 | 0.801798 | 7.595138e-49 | -8.615850e-47 |
| Msa0217400 | Msa1447090 | 0.823668 | 1.224009e-53 | -8.615850e-47 |
| Msa0221060 | Msa1447090 | 0.817072 | 3.985437e-52 | -8.615850e-47 |
| Msa0226250 | Msa1447090 | 0.831494 | 1.617174e-55 | -8.615850e-47 |
| Msa0233190 | Msa1447090 | 0.804929 | 1.705909e-49 | -8.615850e-47 |
| Msa1226510 | Msa1447090 | 0.806970 | 6.351924e-50 | -8.615850e-47 |
| Msa1228210 | Msa1447090 | 0.806316 | 8.725537e-50 | -8.615850e-47 |
| Msa1242390 | Msa1447090 | 0.804250 | 2.363602e-49 | -8.615850e-47 |
| Msa1265070 | Msa1447090 | 0.800787 | 1.223556e-48 | -8.615850e-47 |
| Msa1265960 | Msa1447090 | 0.812025 | 5.217222e-51 | -8.615850e-47 |
| Msa1271280 | Msa1447090 | 0.802663 | 5.040993e-49 | -8.615850e-47 |
| Msa1271300 | Msa1447090 | 0.816609 | 5.062648e-52 | -8.615850e-47 |
| Msa1284140 | Msa1447090 | 0.847036 | 1.490914e-59 | -8.615850e-47 |
| Msa1297090 | Msa1447090 | 0.818840 | 1.588713e-52 | -8.615850e-47 |
| Msa1318240 | Msa1447090 | 0.801527 | 8.632526e-49 | -8.615850e-47 |
| Msa0376590 | Msa1447090 | 0.813794 | 2.137013e-51 | -8.615850e-47 |
| Msa0393680 | Msa1447090 | 0.813859 | 2.067602e-51 | -8.615850e-47 |
| Msa0423360 | Msa1447090 | -0.812738 | 3.644869e-51 | -8.615850e-47 |
| Msa0448550 | Msa1447090 | -0.800765 | 1.235931e-48 | -8.615850e-47 |
| Msa0980440 | Msa1447090 | 0.809878 | 1.521791e-50 | -8.615850e-47 |
| Msa0981010 | Msa1447090 | 0.806368 | 8.508368e-50 | -8.615850e-47 |
| Msa0988500 | Msa1447090 | 0.812356 | 4.418665e-51 | -8.615850e-47 |
| Msa0990960 | Msa1447090 | 0.801101 | 1.055158e-48 | -8.615850e-47 |
| Msa1008490 | Msa1447090 | 0.862599 | 4.520166e-64 | -8.615850e-47 |
| Msa1020710 | Msa1447090 | 0.809307 | 2.018803e-50 | -8.615850e-47 |
| Msa1033440 | Msa1447090 | -0.814304 | 1.649622e-51 | -8.615850e-47 |
| Msa1036390 | Msa1447090 | 0.830711 | 2.518217e-55 | -8.615850e-47 |
| Msa1037000 | Msa1447090 | 0.822201 | 2.688114e-53 | -8.615850e-47 |
| Msa1040120 | Msa1447090 | 0.843192 | 1.630103e-58 | -8.615850e-47 |
| Msa1041730 | Msa1447090 | 0.804365 | 2.237236e-49 | -8.615850e-47 |
| Msa1041770 | Msa1447090 | 0.883190 | 5.534194e-71 | -8.615850e-47 |
| Msa1068200 | Msa1447090 | -0.800130 | 1.664623e-48 | -8.615850e-47 |
| Msa1073110 | Msa1447090 | -0.810063 | 1.388622e-50 | -8.615850e-47 |
| Msa1075220 | Msa1447090 | -0.802825 | 4.669053e-49 | -8.615850e-47 |
| Msa1076680 | Msa1447090 | 0.818556 | 1.842696e-52 | -8.615850e-47 |
| Msa1080220 | Msa1447090 | 0.804578 | 2.019927e-49 | -8.615850e-47 |
| Msa1080280 | Msa1447090 | 0.858807 | 6.392472e-63 | -8.615850e-47 |
| Msa1083410 | Msa1447090 | 0.857218 | 1.896450e-62 | -8.615850e-47 |
| Msa1084260 | Msa1447090 | 0.817954 | 2.522377e-52 | -8.615850e-47 |
| Msa1098560 | Msa1447090 | 0.833513 | 5.107937e-56 | -8.615850e-47 |
| Msa1099030 | Msa1447090 | 0.820366 | 7.126069e-53 | -8.615850e-47 |
| Msa0243710 | Msa1447090 | 0.812709 | 3.698470e-51 | -8.615850e-47 |
| Msa0257250 | Msa1447090 | 0.822867 | 1.882020e-53 | -8.615850e-47 |
| Msa0258670 | Msa1447090 | -0.802385 | 5.752933e-49 | -8.615850e-47 |
| Msa0260820 | Msa1447090 | -0.831446 | 1.662130e-55 | -8.615850e-47 |
| Msa0262520 | Msa1447090 | 0.806947 | 6.421528e-50 | -8.615850e-47 |
| Msa0264350 | Msa1447090 | 0.808933 | 2.427438e-50 | -8.615850e-47 |
| Msa0266000 | Msa1447090 | -0.849516 | 3.076342e-60 | -8.615850e-47 |
| Msa0269360 | Msa1447090 | 0.820946 | 5.242528e-53 | -8.615850e-47 |
| Msa0270270 | Msa1447090 | 0.807851 | 4.129769e-50 | -8.615850e-47 |
| Msa0274360 | Msa1447090 | 0.803583 | 3.253170e-49 | -8.615850e-47 |
| Msa0275670 | Msa1447090 | 0.807397 | 5.157917e-50 | -8.615850e-47 |
| Msa0294950 | Msa1447090 | 0.802156 | 6.411713e-49 | -8.615850e-47 |
| Msa0294960 | Msa1447090 | 0.811101 | 8.283673e-51 | -8.615850e-47 |
| Msa0296560 | Msa1447090 | 0.813649 | 2.300457e-51 | -8.615850e-47 |
| Msa0296760 | Msa1447090 | 0.800701 | 1.273531e-48 | -8.615850e-47 |
| Msa0304740 | Msa1447090 | 0.855361 | 6.642486e-62 | -8.615850e-47 |
| Msa0311580 | Msa1447090 | 0.829715 | 4.408072e-55 | -8.615850e-47 |
| Msa0313990 | Msa1447090 | 0.852495 | 4.446894e-61 | -8.615850e-47 |
| Msa0325470 | Msa1447090 | 0.833159 | 6.258970e-56 | -8.615850e-47 |
| Msa0331590 | Msa1447090 | 0.857990 | 1.119978e-62 | -8.615850e-47 |
| Msa0331920 | Msa1447090 | 0.820196 | 7.792263e-53 | -8.615850e-47 |
| Msa0333720 | Msa1447090 | -0.821500 | 3.905582e-53 | -8.615850e-47 |
| Msa0338110 | Msa1447090 | 0.818133 | 2.298167e-52 | -8.615850e-47 |
| Msa0342200 | Msa1447090 | 0.810849 | 9.394708e-51 | -8.615850e-47 |
| Msa0349080 | Msa1447090 | 0.815340 | 9.721431e-52 | -8.615850e-47 |
| Msa1115330 | Msa1447090 | 0.818731 | 1.682102e-52 | -8.615850e-47 |
| Msa1122250 | Msa1447090 | 0.810550 | 1.090019e-50 | -8.615850e-47 |
| Msa1125050 | Msa1447090 | 0.832544 | 8.898831e-56 | -8.615850e-47 |
| Msa1125080 | Msa1447090 | 0.811576 | 6.535169e-51 | -8.615850e-47 |
| Msa1128160 | Msa1447090 | 0.843010 | 1.821934e-58 | -8.615850e-47 |
| Msa1165360 | Msa1447090 | 0.837513 | 4.974061e-57 | -8.615850e-47 |
| Msa1167220 | Msa1447090 | 0.812219 | 4.732475e-51 | -8.615850e-47 |
| Msa1204120 | Msa1447090 | 0.802763 | 4.807577e-49 | -8.615850e-47 |
| Msa1212840 | Msa1447090 | 0.811628 | 6.365833e-51 | -8.615850e-47 |
| Msa1220230 | Msa1447090 | 0.824978 | 6.020479e-54 | -8.615850e-47 |
| Msa1221560 | Msa1447090 | 0.816798 | 4.591579e-52 | -8.615850e-47 |
| Msa0482870 | Msa1447090 | 0.821145 | 4.716559e-53 | -8.615850e-47 |
| Msa0491040 | Msa1447090 | 0.814100 | 1.829260e-51 | -8.615850e-47 |
| Msa0516370 | Msa1447090 | 0.821826 | 3.285053e-53 | -8.615850e-47 |
| Msa0538700 | Msa1447090 | 0.809725 | 1.641443e-50 | -8.615850e-47 |
| Msa0540870 | Msa1447090 | 0.802063 | 6.701500e-49 | -8.615850e-47 |
| Msa0567020 | Msa1447090 | 0.804136 | 2.497127e-49 | -8.615850e-47 |
| Msa0843280 | Msa1447090 | 0.805593 | 1.238774e-49 | -8.615850e-47 |
| Msa0845590 | Msa1447090 | -0.800156 | 1.645103e-48 | -8.615850e-47 |
| Msa0891040 | Msa1447090 | 0.813587 | 2.373547e-51 | -8.615850e-47 |
| Msa0907700 | Msa1447090 | 0.803451 | 3.465121e-49 | -8.615850e-47 |
| Msa0936270 | Msa1447090 | 0.803802 | 2.928915e-49 | -8.615850e-47 |
| Msa0946120 | Msa1447090 | 0.854086 | 1.555292e-61 | -8.615850e-47 |
| Msa0951720 | Msa1447090 | 0.815898 | 7.302639e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447090 | MtrunA17_Chr7g0265901 | 83.059 | 425 | 25 | 5 | 1 | 379 | 53 | 476 | 0.0 | 627 |
| Msa1447090 | MtrunA17_Chr1g0179151 | 44.111 | 467 | 157 | 15 | 1 | 379 | 54 | 504 | 1.07e-87 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447090 | AT5G03670.1 | 41.784 | 213 | 106 | 5 | 169 | 378 | 316 | 513 | 5.94e-30 | 120 |
| Msa1447090 | AT5G03670.1 | 37.121 | 132 | 54 | 6 | 3 | 111 | 56 | 181 | 1.48e-11 | 66.2 |
| Msa1447090 | AT5G03670.2 | 37.121 | 132 | 54 | 6 | 3 | 111 | 56 | 181 | 5.68e-11 | 64.3 |
Find 75 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAGGCTTTGGGCTATT+TGG | 0.129747 | tig0031594:-37493 | Msa1447090:intron |
| TAAACCCACATTATATTATT+TGG | 0.168834 | tig0031594:+34707 | Msa1447090:intergenic |
| TCTAACATGGAATGTATTAT+TGG | 0.229248 | tig0031594:-34770 | Msa1447090:three_prime_UTR |
| AAGAAGATGATGAATGTTTC+TGG | 0.233486 | tig0031594:+37550 | Msa1447090:intergenic |
| CAGAGGAATTAGCATGTTAA+TGG | 0.248136 | tig0031594:-34856 | Msa1447090:exon |
| GCTTGCAATCTTTAGCATTC+TGG | 0.276232 | tig0031594:-34891 | Msa1447090:CDS |
| ATTTGAGAAACTTGCAGAAT+TGG | 0.308653 | tig0031594:-35320 | Msa1447090:CDS |
| AGAAAATGACTTCAAAGAAT+TGG | 0.324338 | tig0031594:-35191 | Msa1447090:CDS |
| GGATGAGGATGAAACATATA+TGG | 0.353271 | tig0031594:-35257 | Msa1447090:CDS |
| AGAGGAATTAGCATGTTAAT+GGG | 0.384409 | tig0031594:-34855 | Msa1447090:exon |
| CTAACATGGAATGTATTATT+GGG | 0.405525 | tig0031594:-34769 | Msa1447090:three_prime_UTR |
| GTGGGATTTGCTGTCTGTCA+TGG | 0.410641 | tig0031594:+35140 | Msa1447090:intergenic |
| AGTATCAATCAATTCAAGTC+AGG | 0.420527 | tig0031594:-36542 | Msa1447090:CDS |
| TCTTCTAATATAAAGAATAA+AGG | 0.431130 | tig0031594:+34799 | Msa1447090:intergenic |
| TGTGAGGGAGTTATTGAAGT+TGG | 0.436041 | tig0031594:-37400 | Msa1447090:CDS |
| TATTGAAGAGGTTGGAATCA+TGG | 0.442336 | tig0031594:-35027 | Msa1447090:CDS |
| TCAGTTTCTTAAATTCTTGT+GGG | 0.447004 | tig0031594:+35122 | Msa1447090:intergenic |
| TTCTTCTTGAAGCTGCTCTC+AGG | 0.452952 | tig0031594:-37575 | Msa1447090:CDS |
| ATCAGTTTCTTAAATTCTTG+TGG | 0.459352 | tig0031594:+35121 | Msa1447090:intergenic |
| TGAAGCTGTGTATCTGTCAA+TGG | 0.460059 | tig0031594:-35164 | Msa1447090:CDS |
| AGCTAGGATATTGAAGAGGT+TGG | 0.467698 | tig0031594:-35035 | Msa1447090:CDS |
| AGCAGATAAGGAACATGGCT+GGG | 0.477023 | tig0031594:-34922 | Msa1447090:CDS |
| AGAAGAGGATTTCTCTATAG+AGG | 0.482598 | tig0031594:-34969 | Msa1447090:CDS |
| GGAAGAAGAGGAGGAAGATA+AGG | 0.504402 | tig0031594:-36519 | Msa1447090:CDS |
| TAATTAAGCAAATGAGACTT+GGG | 0.509466 | tig0031594:+34643 | Msa1447090:intergenic |
| TGCAATCTTTAGCATTCTGG+TGG | 0.515937 | tig0031594:-34888 | Msa1447090:CDS |
| TCAGAAAAGCATGTTGGTGA+TGG | 0.518703 | tig0031594:+37256 | Msa1447090:intergenic |
| ACGAAACCAGAATCGGAAGC+AGG | 0.518733 | tig0031594:-37445 | Msa1447090:intron |
| GAGCAGATAAGGAACATGGC+TGG | 0.519541 | tig0031594:-34923 | Msa1447090:CDS |
| TTAATTAAGCAAATGAGACT+TGG | 0.522926 | tig0031594:+34642 | Msa1447090:intergenic |
| ATGGAATGTATTATTGGGAT+AGG | 0.523355 | tig0031594:-34764 | Msa1447090:three_prime_UTR |
| GAAGTTGGATTCTTCTGTGA+AGG | 0.523721 | tig0031594:-37385 | Msa1447090:CDS |
| AGAACTTGAGAAAAGAATGC+TGG | 0.525436 | tig0031594:-35290 | Msa1447090:CDS |
| GGTGGGTCTAAAACACAGAC+TGG | 0.539386 | tig0031594:+36485 | Msa1447090:intergenic |
| AGTGTTGCTGTTCGAGAAGA+GGG | 0.539964 | tig0031594:+37597 | Msa1447090:intergenic |
| AGTGACCAAATAATATAATG+TGG | 0.540524 | tig0031594:-34712 | Msa1447090:three_prime_UTR |
| GCTGGATCAAGAAGAGGATG+AGG | 0.543983 | tig0031594:-35272 | Msa1447090:CDS |
| ATAGCGACGTGGTGATAGCT+AGG | 0.544170 | tig0031594:-35051 | Msa1447090:CDS |
| GAGGATTTCTCTATAGAGGA+TGG | 0.553770 | tig0031594:-34965 | Msa1447090:CDS |
| ATTCAAGTCAGGGGAAGAAG+AGG | 0.558222 | tig0031594:-36531 | Msa1447090:CDS |
| TCATCATCATCCTCGAATGG+TGG | 0.561023 | tig0031594:+36467 | Msa1447090:intergenic |
| GTTGGAATCATGGAAAGAAG+TGG | 0.563148 | tig0031594:-35017 | Msa1447090:CDS |
| GGATGAAACATATATGGAAG+AGG | 0.564977 | tig0031594:-35251 | Msa1447090:CDS |
| CATATAAACGATGATGAAGA+TGG | 0.565217 | tig0031594:-36440 | Msa1447090:CDS |
| GAGGAATTAGCATGTTAATG+GGG | 0.570604 | tig0031594:-34854 | Msa1447090:exon |
| CATCATCATCCTCGAATGGT+GGG | 0.573296 | tig0031594:+36468 | Msa1447090:intergenic |
| GGACTTTCAGAAAAGCATGT+TGG | 0.578510 | tig0031594:+37250 | Msa1447090:intergenic |
| GTATCAATCAATTCAAGTCA+GGG | 0.578564 | tig0031594:-36541 | Msa1447090:CDS |
| AAGTGTTGCTGTTCGAGAAG+AGG | 0.579304 | tig0031594:+37596 | Msa1447090:intergenic |
| GATTTCTCTATAGAGGATGG+AGG | 0.589468 | tig0031594:-34962 | Msa1447090:CDS |
| AATTGATATGATGATAGAAG+AGG | 0.596171 | tig0031594:-34984 | Msa1447090:CDS |
| AAGAATGCTGGATCAAGAAG+AGG | 0.597514 | tig0031594:-35278 | Msa1447090:CDS |
| CAAGTCAGGGGAAGAAGAGG+AGG | 0.599409 | tig0031594:-36528 | Msa1447090:CDS |
| CATATAGAAACTTCAAGTAG+TGG | 0.602899 | tig0031594:-37318 | Msa1447090:CDS |
| GTGACCAAATAATATAATGT+GGG | 0.603907 | tig0031594:-34711 | Msa1447090:three_prime_UTR |
| CTCATGTTTGTAGCTAGATG+TGG | 0.606774 | tig0031594:-34672 | Msa1447090:three_prime_UTR |
| AGAGGATGATGTTGAAGATG+AGG | 0.613307 | tig0031594:-35233 | Msa1447090:CDS |
| AGGAATTAGCATGTTAATGG+GGG | 0.617779 | tig0031594:-34853 | Msa1447090:exon |
| GCAGATAAGGAACATGGCTG+GGG | 0.618512 | tig0031594:-34921 | Msa1447090:CDS |
| ACTTCATCATCATCCTCGAA+TGG | 0.634270 | tig0031594:+36464 | Msa1447090:intergenic |
| TAGAAGAGTATAGTCTAACA+TGG | 0.635242 | tig0031594:-34783 | Msa1447090:three_prime_UTR |
| ATAATGTGGGTTTATGTACA+TGG | 0.637836 | tig0031594:-34698 | Msa1447090:three_prime_UTR |
| TGCTGAGCAGATAAGGAACA+TGG | 0.637996 | tig0031594:-34927 | Msa1447090:CDS |
| AATTAAGCAAATGAGACTTG+GGG | 0.640130 | tig0031594:+34644 | Msa1447090:intergenic |
| TCTCTATAGAGGATGGAGGG+TGG | 0.640291 | tig0031594:-34958 | Msa1447090:CDS |
| TATCAATCAATTCAAGTCAG+GGG | 0.642576 | tig0031594:-36540 | Msa1447090:CDS |
| ACTGATATCTGATCTAATCG+TGG | 0.648080 | tig0031594:-35104 | Msa1447090:CDS |
| ATTTCTCTATAGAGGATGGA+GGG | 0.649835 | tig0031594:-34961 | Msa1447090:CDS |
| GAATGAATATGTGTCTGTGA+GGG | 0.651219 | tig0031594:-37415 | Msa1447090:CDS |
| TGATAGCTAGGATATTGAAG+AGG | 0.656936 | tig0031594:-35039 | Msa1447090:CDS |
| CTGTGACATACTCTGAACAA+TGG | 0.660476 | tig0031594:+36388 | Msa1447090:intergenic |
| GGAATTAGCATGTTAATGGG+GGG | 0.681794 | tig0031594:-34852 | Msa1447090:exon |
| AGAATGAATATGTGTCTGTG+AGG | 0.718238 | tig0031594:-37416 | Msa1447090:CDS |
| GGGGAAGTTAGTTCAAACAG+TGG | 0.724917 | tig0031594:+37630 | Msa1447090:intergenic |
| TTCTTTAGAAGATAGCGACG+TGG | 0.740114 | tig0031594:-35062 | Msa1447090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTTTTTTTTATTT+TGG | - | tig0031594:35190-35209 | Msa1447090:CDS | 0.0% |
| !!! | TTTTCAATAATAAAAAGTTT+AGG | + | tig0031594:36195-36214 | Msa1447090:intergenic | 10.0% |
| !!! | AATTTTATAAAACTTGATAA+GGG | + | tig0031594:36497-36516 | Msa1447090:intergenic | 10.0% |
| !!! | AAATTTTATAAAACTTGATA+AGG | + | tig0031594:36498-36517 | Msa1447090:intergenic | 10.0% |
| !!! | TGATTGTTTGTTTTTTTTTT+CGG | - | tig0031594:35329-35348 | Msa1447090:CDS | 15.0% |
| !!! | GTTTTATCTTTTGTATTTTT+TGG | - | tig0031594:35455-35474 | Msa1447090:intron | 15.0% |
| !!! | ATAAAATTTACTTCACTTTT+TGG | - | tig0031594:36509-36528 | Msa1447090:CDS | 15.0% |
| !! | TCTTCTAATATAAAGAATAA+AGG | + | tig0031594:37512-37531 | Msa1447090:intergenic | 15.0% |
| !!! | CTTTGTTTTTTGTTTGTTTT+TGG | + | tig0031594:34802-34821 | Msa1447090:intergenic | 20.0% |
| !! | CAAAAACAAACAAAAAACAA+AGG | - | tig0031594:34800-34819 | Msa1447090:three_prime_UTR | 20.0% |
| !!! | TTTTCGTTTTGAATGTTTAA+TGG | - | tig0031594:35236-35255 | Msa1447090:CDS | 20.0% |
| !!! | TTATTGACTCATTTTTTGTA+GGG | + | tig0031594:35506-35525 | Msa1447090:intergenic | 20.0% |
| !!! | TTTATTGACTCATTTTTTGT+AGG | + | tig0031594:35507-35526 | Msa1447090:intergenic | 20.0% |
| !!! | TTATTTAATGAGAGTTTTTG+TGG | - | tig0031594:35705-35724 | Msa1447090:intron | 20.0% |
| !!! | AGTTTTTGTGGAATTTAAAT+AGG | - | tig0031594:35717-35736 | Msa1447090:intron | 20.0% |
| !! | ATACAATCAACAAATTAGAA+TGG | + | tig0031594:35966-35985 | Msa1447090:intergenic | 20.0% |
| !!! | ATTCTAATTTGTTGATTGTA+TGG | - | tig0031594:35965-35984 | Msa1447090:intron | 20.0% |
| !! | TGTACAAAAAAAACATTAAG+AGG | - | tig0031594:36019-36038 | Msa1447090:intron | 20.0% |
| !! | ATGTAAAATTACTTGTCTTA+AGG | + | tig0031594:36689-36708 | Msa1447090:intergenic | 20.0% |
| !!! | CAAGTAATTTTACATATGTA+CGG | - | tig0031594:36694-36713 | Msa1447090:intron | 20.0% |
| !!! | ATTTTGAAACTAAGTATGAA+TGG | - | tig0031594:37482-37501 | Msa1447090:intron | 20.0% |
| !! | TAAACCCACATTATATTATT+TGG | + | tig0031594:37604-37623 | Msa1447090:intergenic | 20.0% |
| ! | AAACAAAAAACAAAGGCTTT+GGG | - | tig0031594:34807-34826 | Msa1447090:three_prime_UTR | 25.0% |
| ! | AAAGTACAATCATCAAATTC+TGG | + | tig0031594:35271-35290 | Msa1447090:intergenic | 25.0% |
| ! | AAAAGTTTAGGTGAATTTGA+TGG | + | tig0031594:36183-36202 | Msa1447090:intergenic | 25.0% |
| ! | TGAAAAACAAACACATTTAG+TGG | - | tig0031594:36209-36228 | Msa1447090:intron | 25.0% |
| ! | GAAAAACAAACACATTTAGT+GGG | - | tig0031594:36210-36229 | Msa1447090:intron | 25.0% |
| ! | AAAAACAAACACATTTAGTG+GGG | - | tig0031594:36211-36230 | Msa1447090:intron | 25.0% |
| !! | CTCCTAAAATGAAATTTTGT+GGG | + | tig0031594:36416-36435 | Msa1447090:intergenic | 25.0% |
| !! | TCTCCTAAAATGAAATTTTG+TGG | + | tig0031594:36417-36436 | Msa1447090:intergenic | 25.0% |
| ! | AGATCTTTCAATCAATATGT+TGG | - | tig0031594:36450-36469 | Msa1447090:CDS | 25.0% |
| !!! | TTGTTTTGATTGCAAATTGT+AGG | - | tig0031594:36533-36552 | Msa1447090:CDS | 25.0% |
| ! | TGACCTAATTAATACTCATT+GGG | - | tig0031594:36593-36612 | Msa1447090:intron | 25.0% |
| ! | TATCCCAATGAGTATTAATT+AGG | + | tig0031594:36599-36618 | Msa1447090:intergenic | 25.0% |
| !! | ATTTTGTGGTACCTTAAATT+TGG | - | tig0031594:36620-36639 | Msa1447090:intron | 25.0% |
| ! | ATTCTCAACAACCAAATTTA+AGG | + | tig0031594:36634-36653 | Msa1447090:intergenic | 25.0% |
| ! | AAATTACTTGTCTTAAGGTA+TGG | + | tig0031594:36684-36703 | Msa1447090:intergenic | 25.0% |
| !! | ATCTAACCAAGATATTTTAC+AGG | - | tig0031594:36932-36951 | Msa1447090:intron | 25.0% |
| !!! | ATTCTTTTCTCAAGTTCTAA+TGG | + | tig0031594:37016-37035 | Msa1447090:intergenic | 25.0% |
| ! | AGAAAATGACTTCAAAGAAT+TGG | - | tig0031594:37117-37136 | Msa1447090:intron | 25.0% |
| ! | TCAGTTTCTTAAATTCTTGT+GGG | + | tig0031594:37189-37208 | Msa1447090:intergenic | 25.0% |
| ! | ATCAGTTTCTTAAATTCTTG+TGG | + | tig0031594:37190-37209 | Msa1447090:intergenic | 25.0% |
| ! | AATTGATATGATGATAGAAG+AGG | - | tig0031594:37324-37343 | Msa1447090:CDS | 25.0% |
| ! | TCTAACATGGAATGTATTAT+TGG | - | tig0031594:37538-37557 | Msa1447090:CDS | 25.0% |
| ! | CTAACATGGAATGTATTATT+GGG | - | tig0031594:37539-37558 | Msa1447090:CDS | 25.0% |
| ! | AGTGACCAAATAATATAATG+TGG | - | tig0031594:37596-37615 | Msa1447090:CDS | 25.0% |
| ! | GTGACCAAATAATATAATGT+GGG | - | tig0031594:37597-37616 | Msa1447090:CDS | 25.0% |
| ! | TAATTAAGCAAATGAGACTT+GGG | + | tig0031594:37668-37687 | Msa1447090:intergenic | 25.0% |
| ! | TTAATTAAGCAAATGAGACT+TGG | + | tig0031594:37669-37688 | Msa1447090:intergenic | 25.0% |
| !!! | TTTTTTGAAGTCAGGTGTTT+CGG | + | tig0031594:34655-34674 | Msa1349170:intergenic | 30.0% |
| AAGAAGATGATGAATGTTTC+TGG | + | tig0031594:34761-34780 | Msa1447090:intergenic | 30.0% | |
| CAAACAAAAAACAAAGGCTT+TGG | - | tig0031594:34806-34825 | Msa1447090:three_prime_UTR | 30.0% | |
| TTCTCAGAAGAAAAACAACT+TGG | - | tig0031594:34965-34984 | Msa1447090:CDS | 30.0% | |
| CATATAGAAACTTCAAGTAG+TGG | - | tig0031594:34990-35009 | Msa1447090:CDS | 30.0% | |
| ! | TTTTGTAGCAAATGAACATG+TGG | + | tig0031594:35433-35452 | Msa1447090:intergenic | 30.0% |
| AGTATCAATCAATTCAAGTC+AGG | - | tig0031594:35766-35785 | Msa1447090:intron | 30.0% | |
| GTATCAATCAATTCAAGTCA+GGG | - | tig0031594:35767-35786 | Msa1447090:intron | 30.0% | |
| TATCAATCAATTCAAGTCAG+GGG | - | tig0031594:35768-35787 | Msa1447090:intron | 30.0% | |
| CATATAAACGATGATGAAGA+TGG | - | tig0031594:35868-35887 | Msa1447090:intron | 30.0% | |
| !!! | GTTGATTTTGATTTAGAGAG+CGG | - | tig0031594:35892-35911 | Msa1447090:intron | 30.0% |
| ATTCAACTCAAATCCTACAA+GGG | - | tig0031594:36065-36084 | Msa1447090:intron | 30.0% | |
| TTATATATCACCTATCAACG+AGG | + | tig0031594:36102-36121 | Msa1447090:intergenic | 30.0% | |
| TGTAGTTGTAAACAAAGAGT+AGG | + | tig0031594:36361-36380 | Msa1447090:intergenic | 30.0% | |
| ! | GACCCACAAAATTTCATTTT+AGG | - | tig0031594:36411-36430 | Msa1447090:CDS | 30.0% |
| ! | TAGGATGTTGGTAAATTAGT+TGG | - | tig0031594:36552-36571 | Msa1447090:CDS | 30.0% |
| GTGACCTAATTAATACTCAT+TGG | - | tig0031594:36592-36611 | Msa1447090:intron | 30.0% | |
| ! | ACTCATTGGGATAAATTTTG+TGG | - | tig0031594:36606-36625 | Msa1447090:intron | 30.0% |
| TATGGTACATGTAGCATTAT+AGG | + | tig0031594:36666-36685 | Msa1447090:intergenic | 30.0% | |
| GAATAGAACAGTAAACTGAT+TGG | + | tig0031594:36725-36744 | Msa1447090:intergenic | 30.0% | |
| ATTTGAGAAACTTGCAGAAT+TGG | - | tig0031594:36988-37007 | Msa1447090:intron | 30.0% | |
| AGAGGAATTAGCATGTTAAT+GGG | - | tig0031594:37453-37472 | Msa1447090:intron | 30.0% | |
| ! | TAGAAGAGTATAGTCTAACA+TGG | - | tig0031594:37525-37544 | Msa1447090:CDS | 30.0% |
| ATGGAATGTATTATTGGGAT+AGG | - | tig0031594:37544-37563 | Msa1447090:CDS | 30.0% | |
| ATAATGTGGGTTTATGTACA+TGG | - | tig0031594:37610-37629 | Msa1447090:CDS | 30.0% | |
| AATTAAGCAAATGAGACTTG+GGG | + | tig0031594:37667-37686 | Msa1447090:intergenic | 30.0% | |
| !!! | TTTTTGAAGTCAGGTGTTTC+GGG | + | tig0031594:34654-34673 | Msa1349170:intergenic | 35.0% |
| !!! | AGTGGTGATTTTTTGAAGTC+AGG | + | tig0031594:34663-34682 | Msa1349170:intergenic | 35.0% |
| AGAATGAATATGTGTCTGTG+AGG | - | tig0031594:34892-34911 | Msa1447090:CDS | 35.0% | |
| GAATGAATATGTGTCTGTGA+GGG | - | tig0031594:34893-34912 | Msa1447090:CDS | 35.0% | |
| ! | GAAGGTACGTAGAGAAAAAA+TGG | - | tig0031594:34941-34960 | Msa1447090:CDS | 35.0% |
| GTTTGAAGAGCAAAACGAAA+AGG | + | tig0031594:35082-35101 | Msa1447090:intergenic | 35.0% | |
| AAAACATTAAGAGGCAACCT+TGG | - | tig0031594:36028-36047 | Msa1447090:intron | 35.0% | |
| GATTCAACTCAAATCCTACA+AGG | - | tig0031594:36064-36083 | Msa1447090:intron | 35.0% | |
| GATTGCAAATTGTAGGATGT+TGG | - | tig0031594:36540-36559 | Msa1447090:CDS | 35.0% | |
| CATACTTTCACTCGACAATA+TGG | - | tig0031594:36754-36773 | Msa1447090:intron | 35.0% | |
| CTTGCTCCTGTAAAATATCT+TGG | + | tig0031594:36941-36960 | Msa1447090:intergenic | 35.0% | |
| ! | CAAGATATTTTACAGGAGCA+AGG | - | tig0031594:36939-36958 | Msa1447090:intron | 35.0% |
| AGAACTTGAGAAAAGAATGC+TGG | - | tig0031594:37018-37037 | Msa1447090:intron | 35.0% | |
| GGATGAGGATGAAACATATA+TGG | - | tig0031594:37051-37070 | Msa1447090:intron | 35.0% | |
| GGATGAAACATATATGGAAG+AGG | - | tig0031594:37057-37076 | Msa1447090:intron | 35.0% | |
| ACTGATATCTGATCTAATCG+TGG | - | tig0031594:37204-37223 | Msa1447090:intron | 35.0% | |
| TGATAGCTAGGATATTGAAG+AGG | - | tig0031594:37269-37288 | Msa1447090:CDS | 35.0% | |
| TATTGAAGAGGTTGGAATCA+TGG | - | tig0031594:37281-37300 | Msa1447090:CDS | 35.0% | |
| AGAAGAGGATTTCTCTATAG+AGG | - | tig0031594:37339-37358 | Msa1447090:CDS | 35.0% | |
| ATTTCTCTATAGAGGATGGA+GGG | - | tig0031594:37347-37366 | Msa1447090:CDS | 35.0% | |
| AGAAAAATGCTGAGCAGATA+AGG | - | tig0031594:37374-37393 | Msa1447090:CDS | 35.0% | |
| CAGAGGAATTAGCATGTTAA+TGG | - | tig0031594:37452-37471 | Msa1447090:intron | 35.0% | |
| GAGGAATTAGCATGTTAATG+GGG | - | tig0031594:37454-37473 | Msa1447090:intron | 35.0% | |
| AGGAATTAGCATGTTAATGG+GGG | - | tig0031594:37455-37474 | Msa1447090:intron | 35.0% | |
| ! | AGAAGAGGGACTTTTAACAG+GGG | + | tig0031594:34700-34719 | Msa1349170:intergenic | 40.0% |
| ! | GAGAAGAGGGACTTTTAACA+GGG | + | tig0031594:34701-34720 | Msa1349170:intergenic | 40.0% |
| !! | AACAAAGGCTTTGGGCTATT+TGG | - | tig0031594:34815-34834 | Msa1447090:three_prime_UTR | 40.0% |
| AACGCAAACGAAACCAGAAT+CGG | - | tig0031594:34856-34875 | Msa1447090:exon | 40.0% | |
| TGTGAGGGAGTTATTGAAGT+TGG | - | tig0031594:34908-34927 | Msa1447090:CDS | 40.0% | |
| GAAGTTGGATTCTTCTGTGA+AGG | - | tig0031594:34923-34942 | Msa1447090:CDS | 40.0% | |
| ! | TCAGAAAAGCATGTTGGTGA+TGG | + | tig0031594:35055-35074 | Msa1447090:intergenic | 40.0% |
| ! | GGACTTTCAGAAAAGCATGT+TGG | + | tig0031594:35061-35080 | Msa1447090:intergenic | 40.0% |
| ACCTCAGTTATGTTTCGACT+CGG | + | tig0031594:35145-35164 | Msa1447090:intergenic | 40.0% | |
| CAGAGAGAGAAAGATTTGCA+TGG | + | tig0031594:35309-35328 | Msa1447090:intergenic | 40.0% | |
| ACTTCATCATCATCCTCGAA+TGG | + | tig0031594:35847-35866 | Msa1447090:intergenic | 40.0% | |
| CTGTGACATACTCTGAACAA+TGG | + | tig0031594:35923-35942 | Msa1447090:intergenic | 40.0% | |
| GAGTTGAATCCTTACCAACA+AGG | + | tig0031594:36054-36073 | Msa1447090:intergenic | 40.0% | |
| !! | TGAGACTTTTTCTAACCGTG+AGG | - | tig0031594:36148-36167 | Msa1447090:intron | 40.0% |
| ! | GGGAAATGCCTTTTACATGT+TGG | + | tig0031594:36314-36333 | Msa1447090:intergenic | 40.0% |
| !! | AAAGGCATTTCCCATCAATG+TGG | - | tig0031594:36321-36340 | Msa1447090:intron | 40.0% |
| ATTTCCCATCAATGTGGACT+TGG | - | tig0031594:36327-36346 | Msa1447090:intron | 40.0% | |
| TAAACAAAGAGTAGGCCACT+AGG | + | tig0031594:36353-36372 | Msa1447090:intergenic | 40.0% | |
| AAGAATGCTGGATCAAGAAG+AGG | - | tig0031594:37030-37049 | Msa1447090:intron | 40.0% | |
| AGAGGATGATGTTGAAGATG+AGG | - | tig0031594:37075-37094 | Msa1447090:intron | 40.0% | |
| TGAAGCTGTGTATCTGTCAA+TGG | - | tig0031594:37144-37163 | Msa1447090:intron | 40.0% | |
| ! | TTCTTTAGAAGATAGCGACG+TGG | - | tig0031594:37246-37265 | Msa1447090:intron | 40.0% |
| AGCTAGGATATTGAAGAGGT+TGG | - | tig0031594:37273-37292 | Msa1447090:CDS | 40.0% | |
| GTTGGAATCATGGAAAGAAG+TGG | - | tig0031594:37291-37310 | Msa1447090:CDS | 40.0% | |
| GAGGATTTCTCTATAGAGGA+TGG | - | tig0031594:37343-37362 | Msa1447090:CDS | 40.0% | |
| GATTTCTCTATAGAGGATGG+AGG | - | tig0031594:37346-37365 | Msa1447090:CDS | 40.0% | |
| GCTTGCAATCTTTAGCATTC+TGG | - | tig0031594:37417-37436 | Msa1447090:CDS | 40.0% | |
| TGCAATCTTTAGCATTCTGG+TGG | - | tig0031594:37420-37439 | Msa1447090:CDS | 40.0% | |
| !! | TCTGGTGGATGAATTTTCAG+AGG | - | tig0031594:37435-37454 | Msa1447090:CDS | 40.0% |
| GGAATTAGCATGTTAATGGG+GGG | - | tig0031594:37456-37475 | Msa1447090:intron | 40.0% | |
| CTCATGTTTGTAGCTAGATG+TGG | - | tig0031594:37636-37655 | Msa1447090:CDS | 40.0% | |
| GGGGAAGTTAGTTCAAACAG+TGG | + | tig0031594:34681-34700 | Msa1349170:intergenic | 45.0% | |
| ! | CGAGAAGAGGGACTTTTAAC+AGG | + | tig0031594:34702-34721 | Msa1349170:intergenic | 45.0% |
| ! | AGTGTTGCTGTTCGAGAAGA+GGG | + | tig0031594:34714-34733 | Msa1349170:intergenic | 45.0% |
| ! | AAGTGTTGCTGTTCGAGAAG+AGG | + | tig0031594:34715-34734 | Msa1349170:intergenic | 45.0% |
| TTCTTCTTGAAGCTGCTCTC+AGG | - | tig0031594:34733-34752 | Msa1447090:three_prime_UTR | 45.0% | |
| CTATTTCCTGCTTCCGATTC+TGG | + | tig0031594:34872-34891 | Msa1447090:intergenic | 45.0% | |
| CTTCAAACAAGTCCTTGCTC+CGG | - | tig0031594:35094-35113 | Msa1447090:CDS | 45.0% | |
| ATTCAAGTCAGGGGAAGAAG+AGG | - | tig0031594:35777-35796 | Msa1447090:intron | 45.0% | |
| GGAAGAAGAGGAGGAAGATA+AGG | - | tig0031594:35789-35808 | Msa1447090:intron | 45.0% | |
| !! | TGTTTTAGACCCACCATTCG+AGG | - | tig0031594:35831-35850 | Msa1447090:intron | 45.0% |
| CATCATCATCCTCGAATGGT+GGG | + | tig0031594:35843-35862 | Msa1447090:intergenic | 45.0% | |
| TCATCATCATCCTCGAATGG+TGG | + | tig0031594:35844-35863 | Msa1447090:intergenic | 45.0% | |
| AATCCTTACCAACAAGGCCA+AGG | + | tig0031594:36048-36067 | Msa1447090:intergenic | 45.0% | |
| TGTGATTGTCTTGTGTGTGC+TGG | - | tig0031594:36249-36268 | Msa1447090:intron | 45.0% | |
| CAGCTGCTCCAACATGTAAA+AGG | - | tig0031594:36303-36322 | Msa1447090:intron | 45.0% | |
| TAGGCCAAGTCCACATTGAT+GGG | + | tig0031594:36334-36353 | Msa1447090:intergenic | 45.0% | |
| TGCTGAGCAGATAAGGAACA+TGG | - | tig0031594:37381-37400 | Msa1447090:CDS | 45.0% | |
| AGCAGATAAGGAACATGGCT+GGG | - | tig0031594:37386-37405 | Msa1447090:CDS | 45.0% | |
| ACGAAACCAGAATCGGAAGC+AGG | - | tig0031594:34863-34882 | Msa1447090:CDS | 50.0% | |
| GCCGAGTCGAAACATAACTG+AGG | - | tig0031594:35141-35160 | Msa1447090:CDS | 50.0% | |
| ! | GGTGGGTCTAAAACACAGAC+TGG | + | tig0031594:35826-35845 | Msa1447090:intergenic | 50.0% |
| !! | CAACCTTGGCCTTGTTGGTA+AGG | - | tig0031594:36042-36061 | Msa1447090:intron | 50.0% |
| CGATGTGAGACCTCGTTGAT+AGG | - | tig0031594:36089-36108 | Msa1447090:intron | 50.0% | |
| CTAGGCCAAGTCCACATTGA+TGG | + | tig0031594:36335-36354 | Msa1447090:intergenic | 50.0% | |
| TCAATGTGGACTTGGCCTAG+TGG | - | tig0031594:36335-36354 | Msa1447090:intron | 50.0% | |
| GCTGGATCAAGAAGAGGATG+AGG | - | tig0031594:37036-37055 | Msa1447090:intron | 50.0% | |
| !! | GTGGGATTTGCTGTCTGTCA+TGG | + | tig0031594:37171-37190 | Msa1447090:intergenic | 50.0% |
| ATAGCGACGTGGTGATAGCT+AGG | - | tig0031594:37257-37276 | Msa1447090:CDS | 50.0% | |
| TCTCTATAGAGGATGGAGGG+TGG | - | tig0031594:37350-37369 | Msa1447090:CDS | 50.0% | |
| GAGCAGATAAGGAACATGGC+TGG | - | tig0031594:37385-37404 | Msa1447090:CDS | 50.0% | |
| GCAGATAAGGAACATGGCTG+GGG | - | tig0031594:37387-37406 | Msa1447090:CDS | 50.0% | |
| ! | TAACTCCGGGTGTTTGCTGC+CGG | + | tig0031594:35116-35135 | Msa1447090:intergenic | 55.0% |
| CAAGTCAGGGGAAGAAGAGG+AGG | - | tig0031594:35780-35799 | Msa1447090:intron | 55.0% | |
| !! | AGAGGCAACCTTGGCCTTGT+TGG | - | tig0031594:36037-36056 | Msa1447090:intron | 55.0% |
| GGTCTCACATCGACCCTTGT+AGG | + | tig0031594:36081-36100 | Msa1447090:intergenic | 55.0% | |
| ! | TTCTAACCGTGAGGAGCGCA+CGG | - | tig0031594:36157-36176 | Msa1447090:intron | 55.0% |
| TTGCTCCGGCAGCAAACACC+CGG | - | tig0031594:35108-35127 | Msa1447090:CDS | 60.0% | |
| ! | GGGTGTTTGCTGCCGGAGCA+AGG | + | tig0031594:35109-35128 | Msa1447090:intergenic | 65.0% |
| GACTCGGCGACGCTAACTCC+GGG | + | tig0031594:35129-35148 | Msa1447090:intergenic | 65.0% | |
| ! | CGACTCGGCGACGCTAACTC+CGG | + | tig0031594:35130-35149 | Msa1447090:intergenic | 65.0% |
| TGATGGCCGTGCGCTCCTCA+CGG | + | tig0031594:36166-36185 | Msa1447090:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031594 | gene | 34612 | 37718 | 34612 | ID=Msa1447090;Name=Msa1447090 |
| tig0031594 | mRNA | 34612 | 37718 | 34612 | ID=Msa1447090-mRNA-1;Parent=Msa1447090;Name=Msa1447090-mRNA-1;_AED=0.17;_eAED=0.27;_QI=0|0.33|0.5|1|0.66|0.75|4|247|379 |
| tig0031594 | exon | 34612 | 35376 | 34612 | ID=Msa1447090-mRNA-1:exon:15734;Parent=Msa1447090-mRNA-1 |
| tig0031594 | exon | 36399 | 36591 | 36399 | ID=Msa1447090-mRNA-1:exon:15733;Parent=Msa1447090-mRNA-1 |
| tig0031594 | exon | 37254 | 37457 | 37254 | ID=Msa1447090-mRNA-1:exon:15732;Parent=Msa1447090-mRNA-1 |
| tig0031594 | exon | 37494 | 37718 | 37494 | ID=Msa1447090-mRNA-1:exon:15731;Parent=Msa1447090-mRNA-1 |
| tig0031594 | CDS | 37494 | 37718 | 37494 | ID=Msa1447090-mRNA-1:cds;Parent=Msa1447090-mRNA-1 |
| tig0031594 | CDS | 37254 | 37457 | 37254 | ID=Msa1447090-mRNA-1:cds;Parent=Msa1447090-mRNA-1 |
| tig0031594 | CDS | 36399 | 36591 | 36399 | ID=Msa1447090-mRNA-1:cds;Parent=Msa1447090-mRNA-1 |
| tig0031594 | CDS | 34859 | 35376 | 34859 | ID=Msa1447090-mRNA-1:cds;Parent=Msa1447090-mRNA-1 |
| tig0031594 | three_prime_UTR | 34612 | 34858 | 34612 | ID=Msa1447090-mRNA-1:three_prime_utr;Parent=Msa1447090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
