Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095550 | XP_013468489.1 | 97.917 | 384 | 8 | 0 | 26 | 409 | 74 | 457 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095550 | sp|Q94C59|PATL4_ARATH | 45.808 | 334 | 171 | 5 | 80 | 409 | 201 | 528 | 8.58e-100 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095550 | A0A072VLM7 | 97.917 | 384 | 8 | 0 | 26 | 409 | 74 | 457 | 0.0 | 775 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa0095550 | 0.832820 | 7.599286e-56 | -8.615850e-47 |
| Msa0025090 | Msa0095550 | 0.830723 | 2.500674e-55 | -8.615850e-47 |
| Msa0027610 | Msa0095550 | 0.890304 | 1.111820e-73 | -8.615850e-47 |
| Msa0072590 | Msa0095550 | 0.821560 | 3.783849e-53 | -8.615850e-47 |
| Msa0075370 | Msa0095550 | 0.891036 | 5.731201e-74 | -8.615850e-47 |
| Msa0083200 | Msa0095550 | 0.834243 | 3.355568e-56 | -8.615850e-47 |
| Msa0095550 | Msa0106810 | 0.812347 | 4.437339e-51 | -8.615850e-47 |
| Msa0095550 | Msa0112800 | 0.800784 | 1.224969e-48 | -8.615850e-47 |
| Msa0095550 | Msa0123310 | 0.888773 | 4.385857e-73 | -8.615850e-47 |
| Msa0095550 | Msa0143360 | 0.802132 | 6.485043e-49 | -8.615850e-47 |
| Msa0095550 | Msa0153290 | 0.825123 | 5.563929e-54 | -8.615850e-47 |
| Msa0095550 | Msa0167800 | 0.905380 | 4.565688e-80 | -8.615850e-47 |
| Msa0095550 | Msa0175480 | 0.832474 | 9.260484e-56 | -8.615850e-47 |
| Msa0095550 | Msa0207900 | 0.800694 | 1.278154e-48 | -8.615850e-47 |
| Msa0095550 | Msa0218480 | 0.832573 | 8.750573e-56 | -8.615850e-47 |
| Msa0095550 | Msa0218590 | 0.834058 | 3.732627e-56 | -8.615850e-47 |
| Msa0095550 | Msa0219140 | 0.810881 | 9.247434e-51 | -8.615850e-47 |
| Msa0095550 | Msa0226580 | 0.817282 | 3.575447e-52 | -8.615850e-47 |
| Msa0095550 | Msa0258280 | 0.817728 | 2.836523e-52 | -8.615850e-47 |
| Msa0095550 | Msa0258960 | 0.803404 | 3.542341e-49 | -8.615850e-47 |
| Msa0095550 | Msa0298180 | 0.801945 | 7.087546e-49 | -8.615850e-47 |
| Msa0095550 | Msa0370350 | 0.838673 | 2.501327e-57 | -8.615850e-47 |
| Msa0095550 | Msa0384130 | 0.804667 | 1.935603e-49 | -8.615850e-47 |
| Msa0095550 | Msa0413040 | 0.802767 | 4.798863e-49 | -8.615850e-47 |
| Msa0095550 | Msa0417850 | 0.816245 | 6.108907e-52 | -8.615850e-47 |
| Msa0095550 | Msa0426990 | 0.809892 | 1.511274e-50 | -8.615850e-47 |
| Msa0095550 | Msa0451370 | 0.804223 | 2.395150e-49 | -8.615850e-47 |
| Msa0095550 | Msa0478750 | 0.807339 | 5.305138e-50 | -8.615850e-47 |
| Msa0095550 | Msa0522830 | 0.817057 | 4.016210e-52 | -8.615850e-47 |
| Msa0095550 | Msa0580430 | 0.801544 | 8.562819e-49 | -8.615850e-47 |
| Msa0095550 | Msa0587060 | 0.820600 | 6.295938e-53 | -8.615850e-47 |
| Msa0095550 | Msa0648410 | 0.802454 | 5.568425e-49 | -8.615850e-47 |
| Msa0095550 | Msa0665010 | 0.822398 | 2.420418e-53 | -8.615850e-47 |
| Msa0095550 | Msa0687320 | 0.810849 | 9.395657e-51 | -8.615850e-47 |
| Msa0095550 | Msa0690920 | 0.808686 | 2.741642e-50 | -8.615850e-47 |
| Msa0095550 | Msa0795930 | 0.805113 | 1.561322e-49 | -8.615850e-47 |
| Msa0095550 | Msa1041770 | 0.812390 | 4.342258e-51 | -8.615850e-47 |
| Msa0095550 | Msa1080280 | 0.825070 | 5.727326e-54 | -8.615850e-47 |
| Msa0095550 | Msa1138730 | 0.837419 | 5.255302e-57 | -8.615850e-47 |
| Msa0095550 | Msa1167250 | 0.805187 | 1.506542e-49 | -8.615850e-47 |
| Msa0095550 | Msa1186010 | 0.821815 | 3.303609e-53 | -8.615850e-47 |
| Msa0095550 | Msa1203090 | 0.803723 | 3.041802e-49 | -8.615850e-47 |
| Msa0095550 | Msa1203210 | 0.815083 | 1.108734e-51 | -8.615850e-47 |
| Msa0095550 | Msa1215660 | 0.817530 | 3.144052e-52 | -8.615850e-47 |
| Msa0095550 | Msa1230190 | 0.801026 | 1.093144e-48 | -8.615850e-47 |
| Msa0095550 | Msa1272770 | 0.801791 | 7.619726e-49 | -8.615850e-47 |
| Msa0095550 | Msa1295840 | 0.837571 | 4.805091e-57 | -8.615850e-47 |
| Msa0095550 | Msa1336350 | 0.809818 | 1.567791e-50 | -8.615850e-47 |
| Msa0095550 | Msa1395700 | 0.809023 | 2.322837e-50 | -8.615850e-47 |
| Msa0095550 | Msa1398310 | 0.830603 | 2.676128e-55 | -8.615850e-47 |
| Msa0095550 | Msa1400600 | 0.814955 | 1.183438e-51 | -8.615850e-47 |
| Msa0095550 | Msa1407200 | 0.807179 | 5.734805e-50 | -8.615850e-47 |
| Msa0095550 | Msa1409760 | 0.804833 | 1.787156e-49 | -8.615850e-47 |
| Msa0095550 | Msa1415120 | 0.813342 | 2.687265e-51 | -8.615850e-47 |
| Msa0095550 | Msa1426690 | 0.821527 | 3.851426e-53 | -8.615850e-47 |
| Msa0095550 | Msa1433060 | 0.806713 | 7.196470e-50 | -8.615850e-47 |
| Msa0095550 | Msa1450850 | 0.801988 | 6.943944e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095550 | MtrunA17_Chr1g0183881 | 97.917 | 384 | 8 | 0 | 26 | 409 | 74 | 457 | 0.0 | 775 |
| Msa0095550 | MtrunA17_Chr2g0293201 | 44.416 | 394 | 192 | 5 | 43 | 409 | 64 | 457 | 1.30e-117 | 351 |
| Msa0095550 | MtrunA17_Chr8g0385291 | 44.606 | 343 | 176 | 6 | 72 | 409 | 158 | 491 | 6.22e-97 | 299 |
| Msa0095550 | MtrunA17_Chr4g0014901 | 41.369 | 336 | 187 | 6 | 80 | 409 | 253 | 584 | 6.69e-89 | 281 |
| Msa0095550 | MtrunA17_Chr3g0131071 | 40.469 | 341 | 190 | 7 | 70 | 403 | 221 | 555 | 2.94e-84 | 268 |
| Msa0095550 | MtrunA17_Chr4g0004981 | 37.982 | 337 | 195 | 6 | 81 | 409 | 107 | 437 | 1.61e-80 | 255 |
| Msa0095550 | MtrunA17_Chr4g0014911 | 41.420 | 338 | 186 | 5 | 80 | 409 | 121 | 454 | 2.87e-76 | 244 |
| Msa0095550 | MtrunA17_Chr7g0243541 | 31.304 | 345 | 185 | 6 | 70 | 409 | 87 | 384 | 2.39e-53 | 183 |
| Msa0095550 | MtrunA17_Chr3g0131581 | 28.829 | 222 | 127 | 10 | 94 | 305 | 62 | 262 | 2.49e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095550 | AT1G30690.1 | 45.808 | 334 | 171 | 5 | 80 | 409 | 201 | 528 | 8.72e-101 | 310 |
| Msa0095550 | AT1G30690.2 | 45.808 | 334 | 171 | 5 | 80 | 409 | 201 | 528 | 8.72e-101 | 310 |
| Msa0095550 | AT4G09160.2 | 44.838 | 339 | 167 | 6 | 83 | 409 | 301 | 631 | 3.39e-90 | 286 |
| Msa0095550 | AT4G09160.3 | 44.838 | 339 | 167 | 6 | 83 | 409 | 301 | 631 | 4.37e-90 | 286 |
| Msa0095550 | AT4G09160.1 | 44.838 | 339 | 167 | 6 | 83 | 409 | 326 | 656 | 5.49e-90 | 286 |
| Msa0095550 | AT1G72160.1 | 38.667 | 375 | 205 | 6 | 43 | 409 | 124 | 481 | 9.54e-84 | 265 |
| Msa0095550 | AT3G51670.1 | 40.060 | 332 | 188 | 6 | 84 | 409 | 69 | 395 | 7.01e-80 | 252 |
| Msa0095550 | AT1G22530.2 | 34.670 | 349 | 207 | 9 | 72 | 409 | 303 | 641 | 8.30e-65 | 219 |
| Msa0095550 | AT1G22530.1 | 34.957 | 349 | 206 | 9 | 72 | 409 | 337 | 675 | 1.91e-64 | 219 |
| Msa0095550 | AT1G72150.1 | 33.134 | 335 | 205 | 8 | 83 | 409 | 243 | 566 | 7.26e-58 | 199 |
Find 93 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTGAGGAAATTCTTAA+AGG | 0.227165 | 1_3:-818681 | Msa0095550:CDS |
| AAAATTCAAGAAGCAATTAT+TGG | 0.227229 | 1_3:-818827 | Msa0095550:CDS |
| TTGTTAGGTGAAGGAGAAAA+AGG | 0.245387 | 1_3:-818797 | Msa0095550:CDS |
| ATCTTAGAGATATTACATTA+TGG | 0.248604 | 1_3:-818748 | Msa0095550:CDS |
| TAAAATTCTTGATGAAGATT+TGG | 0.250588 | 1_3:-818582 | Msa0095550:CDS |
| ATAGTAATAACAGTTGAAAA+TGG | 0.282119 | 1_3:-817187 | Msa0095550:CDS |
| TGGGGTTGATGGAATTATTC+AGG | 0.282362 | 1_3:-818363 | Msa0095550:CDS |
| AGCTCTTTCATTCCTTGAAT+TGG | 0.286220 | 1_3:+818320 | None:intergenic |
| TTGTAGTAAATGCACCATTT+TGG | 0.309402 | 1_3:-818095 | Msa0095550:CDS |
| TTCTGGCAAATTCTCGTTGC+CGG | 0.319245 | 1_3:-819117 | Msa0095550:five_prime_UTR |
| ATTATTGGAAAATATTTGTT+AGG | 0.321956 | 1_3:-818812 | Msa0095550:CDS |
| AAAATTCTTGATGAAGATTT+GGG | 0.329182 | 1_3:-818581 | Msa0095550:CDS |
| AAGAAACTTGTTATGATTTG+TGG | 0.333859 | 1_3:+819198 | None:intergenic |
| GCTCAACTCCGTCAGCAAAA+AGG | 0.352272 | 1_3:-818300 | Msa0095550:CDS |
| AGAGGGTGCAGAGGATGGGG+AGG | 0.358125 | 1_3:+819154 | None:intergenic |
| AACACTCACCTGAGAAGAAT+TGG | 0.366039 | 1_3:+817985 | None:intergenic |
| TTGTATGAACATTCATCATT+TGG | 0.366571 | 1_3:+817283 | None:intergenic |
| ACGAGAATTTGCCAGAAAAC+TGG | 0.369041 | 1_3:+819123 | None:intergenic |
| TGTGCTCTACTTGGTAATAA+AGG | 0.369694 | 1_3:+818719 | None:intergenic |
| TCTTAGAGATATTACATTAT+GGG | 0.371202 | 1_3:-818747 | Msa0095550:CDS |
| GAGATGGAGGATTCAATTGA+TGG | 0.376525 | 1_3:-818417 | Msa0095550:CDS |
| AATTTGTACAAGAAGACATT+TGG | 0.376644 | 1_3:-818467 | Msa0095550:CDS |
| GAGCATCTTCCAGCTGGATA+TGG | 0.380972 | 1_3:-817871 | Msa0095550:CDS |
| AATTTCATGTTGGTAGCTTC+TGG | 0.400803 | 1_3:+817031 | None:intergenic |
| GCAGAGGATGGGGAGGGATC+AGG | 0.403068 | 1_3:+819161 | None:intergenic |
| AGCCTAATCTCTGCAGGACT+TGG | 0.407088 | 1_3:+818884 | None:intergenic |
| CAGCTGGATATGGTGGTCTA+AGG | 0.408968 | 1_3:-817861 | Msa0095550:CDS |
| TATCCAGCTGGAAGATGCTC+TGG | 0.411235 | 1_3:+817874 | None:intergenic |
| CTACAAAACCAAAGTGTTGT+TGG | 0.411528 | 1_3:-817253 | Msa0095550:CDS |
| AGCTACCAACATGAAATTGA+TGG | 0.418460 | 1_3:-817026 | Msa0095550:CDS |
| TTGAAAAGTGCACCAATTCA+AGG | 0.425968 | 1_3:-818332 | Msa0095550:CDS |
| TGTGAAGTGTAGAGCCAAAA+TGG | 0.434368 | 1_3:+818081 | None:intergenic |
| CAAGAGAAAGAAATCATTGT+TGG | 0.439581 | 1_3:-818861 | Msa0095550:CDS |
| TAGTAATAACAGTTGAAAAT+GGG | 0.440697 | 1_3:-817186 | Msa0095550:CDS |
| TGTTACAGAAGACATTGGTT+TGG | 0.442089 | 1_3:-818625 | Msa0095550:CDS |
| TGGAAGAGGGTGCAGAGGAT+GGG | 0.446081 | 1_3:+819150 | None:intergenic |
| AGAAAACTGGAGCATGGAAG+AGG | 0.447135 | 1_3:+819136 | None:intergenic |
| TGCTCTAAAACTTTATCATC+AGG | 0.448465 | 1_3:+817814 | None:intergenic |
| CTCTTGAGCCTAATCTCTGC+AGG | 0.448756 | 1_3:+818878 | None:intergenic |
| GGAAAATATTTGTTAGGTGA+AGG | 0.449552 | 1_3:-818806 | Msa0095550:CDS |
| ATGGAAGAGGGTGCAGAGGA+TGG | 0.462405 | 1_3:+819149 | None:intergenic |
| CGTTGCCGGAAAATCCGATC+AGG | 0.466677 | 1_3:-819103 | Msa0095550:five_prime_UTR |
| AGAATTGGTGTGACCCTTTG+TGG | 0.480253 | 1_3:+818000 | None:intergenic |
| GGCCCAGAGCATCTTCCAGC+TGG | 0.482220 | 1_3:-817877 | Msa0095550:CDS |
| CTCATGGCCTCTTCCCTGAT+CGG | 0.487905 | 1_3:+819089 | None:intergenic |
| TGGGGAGGGATCAGGAAAGA+TGG | 0.488831 | 1_3:+819169 | None:intergenic |
| GGAAGAGGGTGCAGAGGATG+GGG | 0.492693 | 1_3:+819151 | None:intergenic |
| GTACCTTCATGTGCTCTACT+TGG | 0.495591 | 1_3:+818710 | None:intergenic |
| ATATTTGGATAGTAGAGATA+AGG | 0.496144 | 1_3:-818537 | Msa0095550:CDS |
| ACTGTTATTACTATCTTCCC+TGG | 0.497920 | 1_3:+817196 | None:intergenic |
| TGACCCTTTGTGGTCTTGCA+AGG | 0.502712 | 1_3:+818010 | None:intergenic |
| TGCTGTCACCAACAACACTT+TGG | 0.503098 | 1_3:+817245 | None:intergenic |
| GGGTCACACCAATTCTTCTC+AGG | 0.506747 | 1_3:-817993 | Msa0095550:intron |
| CACCAAGTCCTGCAGAGATT+AGG | 0.512586 | 1_3:-818886 | Msa0095550:CDS |
| TTGTTGAGCACCTCATTGAC+AGG | 0.517442 | 1_3:+817754 | None:intergenic |
| CATCCTTGCAAGACCACAAA+GGG | 0.520308 | 1_3:-818013 | Msa0095550:CDS |
| CTTCACAAGTGTTATTCTCA+AGG | 0.523067 | 1_3:-818065 | Msa0095550:CDS |
| ATGAAATGTCACAGGTACAT+AGG | 0.530202 | 1_3:-817898 | Msa0095550:intron |
| ATGTGGGACATAACTGTTGT+TGG | 0.536809 | 1_3:-817337 | Msa0095550:CDS |
| GGAAAATCCGATCAGGGAAG+AGG | 0.541733 | 1_3:-819096 | Msa0095550:five_prime_UTR |
| CTTAGAGATATTACATTATG+GGG | 0.542377 | 1_3:-818746 | Msa0095550:CDS |
| ATGTTCATCATTGCATTCAT+CGG | 0.544558 | 1_3:+819061 | None:intergenic |
| GGACATAACTGTTGTTGGAT+GGG | 0.553153 | 1_3:-817332 | Msa0095550:CDS |
| GCATTCATCGGTATCACTCA+TGG | 0.553380 | 1_3:+819073 | None:intergenic |
| TCGTAAACATAGTAACAAAC+CGG | 0.557690 | 1_3:+818506 | None:intergenic |
| TAGAGATAAGGAAGGTCGAC+CGG | 0.565192 | 1_3:-818525 | Msa0095550:CDS |
| CTTAGACCACCATATCCAGC+TGG | 0.567452 | 1_3:+817862 | None:intergenic |
| CATCTTCCAGCTGGATATGG+TGG | 0.574311 | 1_3:-817868 | Msa0095550:CDS |
| ATCCAGCTGGAAGATGCTCT+GGG | 0.577545 | 1_3:+817875 | None:intergenic |
| TTCTGCCATCAATTTCATGT+TGG | 0.581698 | 1_3:+817021 | None:intergenic |
| TGACATGTTACAGAAGACAT+TGG | 0.594854 | 1_3:-818630 | Msa0095550:CDS |
| CTGGATATGGTGGTCTAAGG+AGG | 0.598272 | 1_3:-817858 | Msa0095550:CDS |
| TGGATGGGAGGTGATTTACA+AGG | 0.598715 | 1_3:-817317 | Msa0095550:CDS |
| GAGGGTGCAGAGGATGGGGA+GGG | 0.602354 | 1_3:+819155 | None:intergenic |
| GTTGTTTCAAAGCTATTACC+CGG | 0.610480 | 1_3:-818270 | Msa0095550:CDS |
| TTTGCCAGAAAACTGGAGCA+TGG | 0.611039 | 1_3:+819130 | None:intergenic |
| AGACTGGAGTGACAATAATG+TGG | 0.612074 | 1_3:-817354 | Msa0095550:CDS |
| CATAACTGTTGTTGGATGGG+AGG | 0.613416 | 1_3:-817329 | Msa0095550:CDS |
| GACTGGAGTGACAATAATGT+GGG | 0.615833 | 1_3:-817353 | Msa0095550:CDS |
| AGTTGAATTTCCTGTCAATG+AGG | 0.616951 | 1_3:-817764 | Msa0095550:intron |
| GGGACATAACTGTTGTTGGA+TGG | 0.617419 | 1_3:-817333 | Msa0095550:CDS |
| GAAAACTGGAGCATGGAAGA+GGG | 0.617854 | 1_3:+819137 | None:intergenic |
| TTGGATAGTAGAGATAAGGA+AGG | 0.628322 | 1_3:-818533 | Msa0095550:CDS |
| TCATGATCTTGTTAGTGATG+TGG | 0.637441 | 1_3:-818946 | Msa0095550:CDS |
| GAGCATGGAAGAGGGTGCAG+AGG | 0.648042 | 1_3:+819145 | None:intergenic |
| TCAAATAAGACTTATCAATG+AGG | 0.649999 | 1_3:-818997 | Msa0095550:exon |
| TTACCAAGTAGAGCACATGA+AGG | 0.650198 | 1_3:-818713 | Msa0095550:CDS |
| AAGGTACTGATATTGTATTG+AGG | 0.652952 | 1_3:-818694 | Msa0095550:CDS |
| GTTGCCGGAAAATCCGATCA+GGG | 0.653037 | 1_3:-819102 | Msa0095550:five_prime_UTR |
| TCATCCTTGCAAGACCACAA+AGG | 0.655234 | 1_3:-818014 | Msa0095550:CDS |
| GATGAATGCAATGATGAACA+TGG | 0.665400 | 1_3:-819059 | Msa0095550:five_prime_UTR |
| GGTTTGTTACTATGTTTACG+AGG | 0.673551 | 1_3:-818504 | Msa0095550:CDS |
| ATGAATGCAATGATGAACAT+GGG | 0.701175 | 1_3:-819058 | Msa0095550:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTGGAAAATATTTGTT+AGG | - | chr1_3:817452-817471 | Msa0095550:intron | 15.0% |
| !! | AATTGAGTAAATATCTAAAT+TGG | + | chr1_3:818838-818857 | None:intergenic | 15.0% |
| !! | AAAGAAATAAATTAGAACAA+AGG | + | chr1_3:818881-818900 | None:intergenic | 15.0% |
| !! | ATTATTGGAAAATATTTGTT+AGG | - | chr1_3:817452-817471 | Msa0095550:intron | 15.0% |
| !! | AATTGAGTAAATATCTAAAT+TGG | + | chr1_3:818838-818857 | None:intergenic | 15.0% |
| !! | AAAGAAATAAATTAGAACAA+AGG | + | chr1_3:818881-818900 | None:intergenic | 15.0% |
| !!! | AGATAATTTTTATGTGATGA+TGG | + | chr1_3:817041-817060 | None:intergenic | 20.0% |
| !! | ATCATCACATAAAAATTATC+TGG | - | chr1_3:817040-817059 | Msa0095550:intron | 20.0% |
| !!! | GATTTTCATTGAAATCTAAA+TGG | + | chr1_3:817249-817268 | None:intergenic | 20.0% |
| !! | AAAATTCAAGAAGCAATTAT+TGG | - | chr1_3:817437-817456 | Msa0095550:intron | 20.0% |
| !! | ATCTTAGAGATATTACATTA+TGG | - | chr1_3:817516-817535 | Msa0095550:intron | 20.0% |
| !! | TCTTAGAGATATTACATTAT+GGG | - | chr1_3:817517-817536 | Msa0095550:intron | 20.0% |
| !! | TAAAATTCTTGATGAAGATT+TGG | - | chr1_3:817682-817701 | Msa0095550:intron | 20.0% |
| !! | AAAATTCTTGATGAAGATTT+GGG | - | chr1_3:817683-817702 | Msa0095550:intron | 20.0% |
| !!! | TTTTGAAAAAGTTGGATATT+TGG | - | chr1_3:817712-817731 | Msa0095550:intron | 20.0% |
| !!! | ACATTTTTATAAACTATCTC+CGG | + | chr1_3:818016-818035 | None:intergenic | 20.0% |
| !!! | TTTTGTCTAAATATCAAATC+CGG | - | chr1_3:818600-818619 | Msa0095550:CDS | 20.0% |
| !!! | AAATTGGTCTTTGAAATTAT+AGG | + | chr1_3:818822-818841 | None:intergenic | 20.0% |
| !! | ATAGTAATAACAGTTGAAAA+TGG | - | chr1_3:819077-819096 | Msa0095550:five_prime_UTR | 20.0% |
| !! | TAGTAATAACAGTTGAAAAT+GGG | - | chr1_3:819078-819097 | Msa0095550:five_prime_UTR | 20.0% |
| !!! | TATATTTTTTTGCATTCAGT+AGG | - | chr1_3:819210-819229 | Msa0095550:five_prime_UTR | 20.0% |
| !!! | AGATAATTTTTATGTGATGA+TGG | + | chr1_3:817041-817060 | None:intergenic | 20.0% |
| !! | ATCATCACATAAAAATTATC+TGG | - | chr1_3:817040-817059 | Msa0095550:intron | 20.0% |
| !!! | GATTTTCATTGAAATCTAAA+TGG | + | chr1_3:817249-817268 | None:intergenic | 20.0% |
| !! | AAAATTCAAGAAGCAATTAT+TGG | - | chr1_3:817437-817456 | Msa0095550:intron | 20.0% |
| !! | ATCTTAGAGATATTACATTA+TGG | - | chr1_3:817516-817535 | Msa0095550:intron | 20.0% |
| !! | TCTTAGAGATATTACATTAT+GGG | - | chr1_3:817517-817536 | Msa0095550:intron | 20.0% |
| !! | TAAAATTCTTGATGAAGATT+TGG | - | chr1_3:817682-817701 | Msa0095550:intron | 20.0% |
| !! | AAAATTCTTGATGAAGATTT+GGG | - | chr1_3:817683-817702 | Msa0095550:intron | 20.0% |
| !!! | TTTTGAAAAAGTTGGATATT+TGG | - | chr1_3:817712-817731 | Msa0095550:intron | 20.0% |
| !!! | ACATTTTTATAAACTATCTC+CGG | + | chr1_3:818016-818035 | None:intergenic | 20.0% |
| !!! | TTTTGTCTAAATATCAAATC+CGG | - | chr1_3:818600-818619 | Msa0095550:CDS | 20.0% |
| !!! | AAATTGGTCTTTGAAATTAT+AGG | + | chr1_3:818822-818841 | None:intergenic | 20.0% |
| !! | ATAGTAATAACAGTTGAAAA+TGG | - | chr1_3:819077-819096 | Msa0095550:five_prime_UTR | 20.0% |
| !! | TAGTAATAACAGTTGAAAAT+GGG | - | chr1_3:819078-819097 | Msa0095550:five_prime_UTR | 20.0% |
| !!! | TATATTTTTTTGCATTCAGT+AGG | - | chr1_3:819210-819229 | Msa0095550:five_prime_UTR | 20.0% |
| !!! | AAGAAACTTGTTATGATTTG+TGG | + | chr1_3:817069-817088 | None:intergenic | 25.0% |
| ! | TCAAATAAGACTTATCAATG+AGG | - | chr1_3:817267-817286 | Msa0095550:CDS | 25.0% |
| ! | AGAAAAAATTTCATTGCCAA+AGG | - | chr1_3:817490-817509 | Msa0095550:intron | 25.0% |
| !!! | ATATCTCTAAGATTTTCCTT+TGG | + | chr1_3:817509-817528 | None:intergenic | 25.0% |
| ! | CTTAGAGATATTACATTATG+GGG | - | chr1_3:817518-817537 | Msa0095550:intron | 25.0% |
| ! | TGTATTGAGGAAATTCTTAA+AGG | - | chr1_3:817583-817602 | Msa0095550:intron | 25.0% |
| ! | ATATTTGGATAGTAGAGATA+AGG | - | chr1_3:817727-817746 | Msa0095550:intron | 25.0% |
| ! | AATTTGTACAAGAAGACATT+TGG | - | chr1_3:817797-817816 | Msa0095550:CDS | 25.0% |
| !!! | ATTAAGAAGTTGAGTTTTAG+AGG | - | chr1_3:817878-817897 | Msa0095550:CDS | 25.0% |
| !! | CATTTTTATAAACTATCTCC+GGG | + | chr1_3:818015-818034 | None:intergenic | 25.0% |
| ! | TTTGTGAAGCTAATAAATTG+TGG | - | chr1_3:818084-818103 | Msa0095550:CDS | 25.0% |
| ! | TTAACATTATGAAATGTCAC+AGG | - | chr1_3:818358-818377 | Msa0095550:CDS | 25.0% |
| ! | TAATATTGTGAATGATGCAT+TGG | + | chr1_3:818727-818746 | None:intergenic | 25.0% |
| ! | TTCCAAAATGATATATGTAG+GGG | + | chr1_3:818760-818779 | None:intergenic | 25.0% |
| ! | CTTCCAAAATGATATATGTA+GGG | + | chr1_3:818761-818780 | None:intergenic | 25.0% |
| ! | TCTTCCAAAATGATATATGT+AGG | + | chr1_3:818762-818781 | None:intergenic | 25.0% |
| ! | TTGTATGAACATTCATCATT+TGG | + | chr1_3:818984-819003 | None:intergenic | 25.0% |
| !! | TCTTTTTACATAAATGAACC+AGG | - | chr1_3:819050-819069 | Msa0095550:five_prime_UTR | 25.0% |
| !! | CTTTTTACATAAATGAACCA+GGG | - | chr1_3:819051-819070 | Msa0095550:five_prime_UTR | 25.0% |
| ! | TATGATAGCAAAATGAACAT+TGG | + | chr1_3:819155-819174 | None:intergenic | 25.0% |
| ! | TACAATATCTTCAAATGAAG+TGG | + | chr1_3:819192-819211 | None:intergenic | 25.0% |
| !!! | AAGAAACTTGTTATGATTTG+TGG | + | chr1_3:817069-817088 | None:intergenic | 25.0% |
| ! | TCAAATAAGACTTATCAATG+AGG | - | chr1_3:817267-817286 | Msa0095550:CDS | 25.0% |
| ! | AGAAAAAATTTCATTGCCAA+AGG | - | chr1_3:817490-817509 | Msa0095550:intron | 25.0% |
| !!! | ATATCTCTAAGATTTTCCTT+TGG | + | chr1_3:817509-817528 | None:intergenic | 25.0% |
| ! | CTTAGAGATATTACATTATG+GGG | - | chr1_3:817518-817537 | Msa0095550:intron | 25.0% |
| ! | TGTATTGAGGAAATTCTTAA+AGG | - | chr1_3:817583-817602 | Msa0095550:intron | 25.0% |
| ! | ATATTTGGATAGTAGAGATA+AGG | - | chr1_3:817727-817746 | Msa0095550:intron | 25.0% |
| ! | AATTTGTACAAGAAGACATT+TGG | - | chr1_3:817797-817816 | Msa0095550:CDS | 25.0% |
| !!! | ATTAAGAAGTTGAGTTTTAG+AGG | - | chr1_3:817878-817897 | Msa0095550:CDS | 25.0% |
| !! | CATTTTTATAAACTATCTCC+GGG | + | chr1_3:818015-818034 | None:intergenic | 25.0% |
| ! | TTTGTGAAGCTAATAAATTG+TGG | - | chr1_3:818084-818103 | Msa0095550:CDS | 25.0% |
| ! | TTAACATTATGAAATGTCAC+AGG | - | chr1_3:818358-818377 | Msa0095550:CDS | 25.0% |
| ! | TAATATTGTGAATGATGCAT+TGG | + | chr1_3:818727-818746 | None:intergenic | 25.0% |
| ! | TTCCAAAATGATATATGTAG+GGG | + | chr1_3:818760-818779 | None:intergenic | 25.0% |
| ! | CTTCCAAAATGATATATGTA+GGG | + | chr1_3:818761-818780 | None:intergenic | 25.0% |
| ! | TCTTCCAAAATGATATATGT+AGG | + | chr1_3:818762-818781 | None:intergenic | 25.0% |
| ! | TTGTATGAACATTCATCATT+TGG | + | chr1_3:818984-819003 | None:intergenic | 25.0% |
| !! | TCTTTTTACATAAATGAACC+AGG | - | chr1_3:819050-819069 | Msa0095550:five_prime_UTR | 25.0% |
| !! | CTTTTTACATAAATGAACCA+GGG | - | chr1_3:819051-819070 | Msa0095550:five_prime_UTR | 25.0% |
| ! | TATGATAGCAAAATGAACAT+TGG | + | chr1_3:819155-819174 | None:intergenic | 25.0% |
| ! | TACAATATCTTCAAATGAAG+TGG | + | chr1_3:819192-819211 | None:intergenic | 25.0% |
| ATGTTCATCATTGCATTCAT+CGG | + | chr1_3:817206-817225 | None:intergenic | 30.0% | |
| ATGAATGCAATGATGAACAT+GGG | - | chr1_3:817206-817225 | Msa0095550:CDS | 30.0% | |
| CAAGAGAAAGAAATCATTGT+TGG | - | chr1_3:817403-817422 | Msa0095550:intron | 30.0% | |
| ! | GGAAAATATTTGTTAGGTGA+AGG | - | chr1_3:817458-817477 | Msa0095550:intron | 30.0% |
| !! | AAGGTACTGATATTGTATTG+AGG | - | chr1_3:817570-817589 | Msa0095550:intron | 30.0% |
| !! | GGTTCTGATTTTGAAAAAGT+TGG | - | chr1_3:817704-817723 | Msa0095550:intron | 30.0% |
| TCGTAAACATAGTAACAAAC+CGG | + | chr1_3:817761-817780 | None:intergenic | 30.0% | |
| !!! | AATGTGACTTGTTTTTGAGA+TGG | - | chr1_3:817831-817850 | Msa0095550:CDS | 30.0% |
| ATTTACTACAATCTGCAAAC+AGG | + | chr1_3:818160-818179 | None:intergenic | 30.0% | |
| ! | TTGTAGTAAATGCACCATTT+TGG | - | chr1_3:818169-818188 | Msa0095550:intron | 30.0% |
| !! | TGAACTTCTTTTTGTTTCTC+TGG | + | chr1_3:818233-818252 | None:intergenic | 30.0% |
| TATCATCAGGAGAAAAATCT+TGG | + | chr1_3:818440-818459 | None:intergenic | 30.0% | |
| !! | TGCTCTAAAACTTTATCATC+AGG | + | chr1_3:818453-818472 | None:intergenic | 30.0% |
| !! | GTCTTTGAAATTATAGGACA+AGG | + | chr1_3:818816-818835 | None:intergenic | 30.0% |
| ACTCAATTTATCAACCATGT+TGG | - | chr1_3:818850-818869 | Msa0095550:CDS | 30.0% | |
| ATGTTCATCATTGCATTCAT+CGG | + | chr1_3:817206-817225 | None:intergenic | 30.0% | |
| ATGAATGCAATGATGAACAT+GGG | - | chr1_3:817206-817225 | Msa0095550:CDS | 30.0% | |
| CAAGAGAAAGAAATCATTGT+TGG | - | chr1_3:817403-817422 | Msa0095550:intron | 30.0% | |
| ! | GGAAAATATTTGTTAGGTGA+AGG | - | chr1_3:817458-817477 | Msa0095550:intron | 30.0% |
| !! | AAGGTACTGATATTGTATTG+AGG | - | chr1_3:817570-817589 | Msa0095550:intron | 30.0% |
| !! | GGTTCTGATTTTGAAAAAGT+TGG | - | chr1_3:817704-817723 | Msa0095550:intron | 30.0% |
| TCGTAAACATAGTAACAAAC+CGG | + | chr1_3:817761-817780 | None:intergenic | 30.0% | |
| !!! | AATGTGACTTGTTTTTGAGA+TGG | - | chr1_3:817831-817850 | Msa0095550:CDS | 30.0% |
| ATTTACTACAATCTGCAAAC+AGG | + | chr1_3:818160-818179 | None:intergenic | 30.0% | |
| ! | TTGTAGTAAATGCACCATTT+TGG | - | chr1_3:818169-818188 | Msa0095550:intron | 30.0% |
| !! | TGAACTTCTTTTTGTTTCTC+TGG | + | chr1_3:818233-818252 | None:intergenic | 30.0% |
| TATCATCAGGAGAAAAATCT+TGG | + | chr1_3:818440-818459 | None:intergenic | 30.0% | |
| !! | TGCTCTAAAACTTTATCATC+AGG | + | chr1_3:818453-818472 | None:intergenic | 30.0% |
| !! | GTCTTTGAAATTATAGGACA+AGG | + | chr1_3:818816-818835 | None:intergenic | 30.0% |
| ACTCAATTTATCAACCATGT+TGG | - | chr1_3:818850-818869 | Msa0095550:CDS | 30.0% | |
| GATGAATGCAATGATGAACA+TGG | - | chr1_3:817205-817224 | Msa0095550:CDS | 35.0% | |
| TCATGATCTTGTTAGTGATG+TGG | - | chr1_3:817318-817337 | Msa0095550:CDS | 35.0% | |
| ! | TTGTGATGATGATGATGATG+AGG | - | chr1_3:817349-817368 | Msa0095550:CDS | 35.0% |
| ! | ATGATGATGATGATGAGGTA+GGG | - | chr1_3:817354-817373 | Msa0095550:CDS | 35.0% |
| TTGTTAGGTGAAGGAGAAAA+AGG | - | chr1_3:817467-817486 | Msa0095550:intron | 35.0% | |
| ! | TGTGCTCTACTTGGTAATAA+AGG | + | chr1_3:817548-817567 | None:intergenic | 35.0% |
| TGACATGTTACAGAAGACAT+TGG | - | chr1_3:817634-817653 | Msa0095550:intron | 35.0% | |
| ! | TGTTACAGAAGACATTGGTT+TGG | - | chr1_3:817639-817658 | Msa0095550:intron | 35.0% |
| TTGGATAGTAGAGATAAGGA+AGG | - | chr1_3:817731-817750 | Msa0095550:intron | 35.0% | |
| !! | GGTTTGTTACTATGTTTACG+AGG | - | chr1_3:817760-817779 | Msa0095550:intron | 35.0% |
| !!! | AAGAAGTTGAGTTTTAGAGG+TGG | - | chr1_3:817881-817900 | Msa0095550:CDS | 35.0% |
| !!! | AGAAGTTGAGTTTTAGAGGT+GGG | - | chr1_3:817882-817901 | Msa0095550:CDS | 35.0% |
| ! | TTGAAAAGTGCACCAATTCA+AGG | - | chr1_3:817932-817951 | Msa0095550:intron | 35.0% |
| AGCTCTTTCATTCCTTGAAT+TGG | + | chr1_3:817947-817966 | None:intergenic | 35.0% | |
| ! | GTTGTTTCAAAGCTATTACC+CGG | - | chr1_3:817994-818013 | Msa0095550:CDS | 35.0% |
| ! | CTTCACAAGTGTTATTCTCA+AGG | - | chr1_3:818199-818218 | Msa0095550:intron | 35.0% |
| ATGAAATGTCACAGGTACAT+AGG | - | chr1_3:818366-818385 | Msa0095550:CDS | 35.0% | |
| AGTTGAATTTCCTGTCAATG+AGG | - | chr1_3:818500-818519 | Msa0095550:CDS | 35.0% | |
| GATACAACCCTAAAACTTCA+AGG | + | chr1_3:818627-818646 | None:intergenic | 35.0% | |
| !! | TTCCATGAGTCATTTTGGAA+CGG | + | chr1_3:818659-818678 | None:intergenic | 35.0% |
| ! | TGCCCCTACATATATCATTT+TGG | - | chr1_3:818755-818774 | Msa0095550:CDS | 35.0% |
| TTTCTTTGATGTGTCTAGAC+TGG | - | chr1_3:818894-818913 | Msa0095550:CDS | 35.0% | |
| !! | CTACAAAACCAAAGTGTTGT+TGG | - | chr1_3:819011-819030 | Msa0095550:five_prime_UTR | 35.0% |
| ACTGTTATTACTATCTTCCC+TGG | + | chr1_3:819071-819090 | None:intergenic | 35.0% | |
| !! | AATTTCATGTTGGTAGCTTC+TGG | + | chr1_3:819236-819255 | None:intergenic | 35.0% |
| AGCTACCAACATGAAATTGA+TGG | - | chr1_3:819238-819257 | Msa0095550:five_prime_UTR | 35.0% | |
| TTCTGCCATCAATTTCATGT+TGG | + | chr1_3:819246-819265 | None:intergenic | 35.0% | |
| GATGAATGCAATGATGAACA+TGG | - | chr1_3:817205-817224 | Msa0095550:CDS | 35.0% | |
| TCATGATCTTGTTAGTGATG+TGG | - | chr1_3:817318-817337 | Msa0095550:CDS | 35.0% | |
| ! | TTGTGATGATGATGATGATG+AGG | - | chr1_3:817349-817368 | Msa0095550:CDS | 35.0% |
| ! | ATGATGATGATGATGAGGTA+GGG | - | chr1_3:817354-817373 | Msa0095550:CDS | 35.0% |
| TTGTTAGGTGAAGGAGAAAA+AGG | - | chr1_3:817467-817486 | Msa0095550:intron | 35.0% | |
| ! | TGTGCTCTACTTGGTAATAA+AGG | + | chr1_3:817548-817567 | None:intergenic | 35.0% |
| TGACATGTTACAGAAGACAT+TGG | - | chr1_3:817634-817653 | Msa0095550:intron | 35.0% | |
| ! | TGTTACAGAAGACATTGGTT+TGG | - | chr1_3:817639-817658 | Msa0095550:intron | 35.0% |
| TTGGATAGTAGAGATAAGGA+AGG | - | chr1_3:817731-817750 | Msa0095550:intron | 35.0% | |
| !! | GGTTTGTTACTATGTTTACG+AGG | - | chr1_3:817760-817779 | Msa0095550:intron | 35.0% |
| !!! | AAGAAGTTGAGTTTTAGAGG+TGG | - | chr1_3:817881-817900 | Msa0095550:CDS | 35.0% |
| !!! | AGAAGTTGAGTTTTAGAGGT+GGG | - | chr1_3:817882-817901 | Msa0095550:CDS | 35.0% |
| ! | TTGAAAAGTGCACCAATTCA+AGG | - | chr1_3:817932-817951 | Msa0095550:intron | 35.0% |
| AGCTCTTTCATTCCTTGAAT+TGG | + | chr1_3:817947-817966 | None:intergenic | 35.0% | |
| ! | GTTGTTTCAAAGCTATTACC+CGG | - | chr1_3:817994-818013 | Msa0095550:CDS | 35.0% |
| ! | CTTCACAAGTGTTATTCTCA+AGG | - | chr1_3:818199-818218 | Msa0095550:intron | 35.0% |
| ATGAAATGTCACAGGTACAT+AGG | - | chr1_3:818366-818385 | Msa0095550:CDS | 35.0% | |
| AGTTGAATTTCCTGTCAATG+AGG | - | chr1_3:818500-818519 | Msa0095550:CDS | 35.0% | |
| GATACAACCCTAAAACTTCA+AGG | + | chr1_3:818627-818646 | None:intergenic | 35.0% | |
| !! | TTCCATGAGTCATTTTGGAA+CGG | + | chr1_3:818659-818678 | None:intergenic | 35.0% |
| ! | TGCCCCTACATATATCATTT+TGG | - | chr1_3:818755-818774 | Msa0095550:CDS | 35.0% |
| TTTCTTTGATGTGTCTAGAC+TGG | - | chr1_3:818894-818913 | Msa0095550:CDS | 35.0% | |
| !! | CTACAAAACCAAAGTGTTGT+TGG | - | chr1_3:819011-819030 | Msa0095550:five_prime_UTR | 35.0% |
| ACTGTTATTACTATCTTCCC+TGG | + | chr1_3:819071-819090 | None:intergenic | 35.0% | |
| !! | AATTTCATGTTGGTAGCTTC+TGG | + | chr1_3:819236-819255 | None:intergenic | 35.0% |
| AGCTACCAACATGAAATTGA+TGG | - | chr1_3:819238-819257 | Msa0095550:five_prime_UTR | 35.0% | |
| TTCTGCCATCAATTTCATGT+TGG | + | chr1_3:819246-819265 | None:intergenic | 35.0% | |
| ACGAGAATTTGCCAGAAAAC+TGG | + | chr1_3:817144-817163 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGATGAGGT+AGG | - | chr1_3:817353-817372 | Msa0095550:CDS | 40.0% |
| TTACCAAGTAGAGCACATGA+AGG | - | chr1_3:817551-817570 | Msa0095550:intron | 40.0% | |
| !!! | GTGACTTGTTTTTGAGATGG+AGG | - | chr1_3:817834-817853 | Msa0095550:CDS | 40.0% |
| GAGATGGAGGATTCAATTGA+TGG | - | chr1_3:817847-817866 | Msa0095550:CDS | 40.0% | |
| !!! | GAAGTTGAGTTTTAGAGGTG+GGG | - | chr1_3:817883-817902 | Msa0095550:CDS | 40.0% |
| !! | TGGGGTTGATGGAATTATTC+AGG | - | chr1_3:817901-817920 | Msa0095550:intron | 40.0% |
| TGTGAAGTGTAGAGCCAAAA+TGG | + | chr1_3:818186-818205 | None:intergenic | 40.0% | |
| AACACTCACCTGAGAAGAAT+TGG | + | chr1_3:818282-818301 | None:intergenic | 40.0% | |
| ! | AATCCGGTCCTTGAAGTTTT+AGG | - | chr1_3:818616-818635 | Msa0095550:CDS | 40.0% |
| ! | ATCCGGTCCTTGAAGTTTTA+GGG | - | chr1_3:818617-818636 | Msa0095550:CDS | 40.0% |
| AACCCTAAAACTTCAAGGAC+CGG | + | chr1_3:818622-818641 | None:intergenic | 40.0% | |
| !!! | TCCATGAGTCATTTTGGAAC+GGG | + | chr1_3:818658-818677 | None:intergenic | 40.0% |
| ! | TGCACTTCCATGAGTCATTT+TGG | + | chr1_3:818664-818683 | None:intergenic | 40.0% |
| GGATAACACATTCAGACAGA+GGG | + | chr1_3:818706-818725 | None:intergenic | 40.0% | |
| TGGATAACACATTCAGACAG+AGG | + | chr1_3:818707-818726 | None:intergenic | 40.0% | |
| GAACAAAGGAAAGTCCAACA+TGG | + | chr1_3:818867-818886 | None:intergenic | 40.0% | |
| AGACTGGAGTGACAATAATG+TGG | - | chr1_3:818910-818929 | Msa0095550:CDS | 40.0% | |
| GACTGGAGTGACAATAATGT+GGG | - | chr1_3:818911-818930 | Msa0095550:CDS | 40.0% | |
| ATGTGGGACATAACTGTTGT+TGG | - | chr1_3:818927-818946 | Msa0095550:CDS | 40.0% | |
| GGACATAACTGTTGTTGGAT+GGG | - | chr1_3:818932-818951 | Msa0095550:CDS | 40.0% | |
| ACGAGAATTTGCCAGAAAAC+TGG | + | chr1_3:817144-817163 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGATGAGGT+AGG | - | chr1_3:817353-817372 | Msa0095550:CDS | 40.0% |
| TTACCAAGTAGAGCACATGA+AGG | - | chr1_3:817551-817570 | Msa0095550:intron | 40.0% | |
| !!! | GTGACTTGTTTTTGAGATGG+AGG | - | chr1_3:817834-817853 | Msa0095550:CDS | 40.0% |
| GAGATGGAGGATTCAATTGA+TGG | - | chr1_3:817847-817866 | Msa0095550:CDS | 40.0% | |
| !!! | GAAGTTGAGTTTTAGAGGTG+GGG | - | chr1_3:817883-817902 | Msa0095550:CDS | 40.0% |
| !! | TGGGGTTGATGGAATTATTC+AGG | - | chr1_3:817901-817920 | Msa0095550:intron | 40.0% |
| TGTGAAGTGTAGAGCCAAAA+TGG | + | chr1_3:818186-818205 | None:intergenic | 40.0% | |
| AACACTCACCTGAGAAGAAT+TGG | + | chr1_3:818282-818301 | None:intergenic | 40.0% | |
| ! | AATCCGGTCCTTGAAGTTTT+AGG | - | chr1_3:818616-818635 | Msa0095550:CDS | 40.0% |
| ! | ATCCGGTCCTTGAAGTTTTA+GGG | - | chr1_3:818617-818636 | Msa0095550:CDS | 40.0% |
| AACCCTAAAACTTCAAGGAC+CGG | + | chr1_3:818622-818641 | None:intergenic | 40.0% | |
| !!! | TCCATGAGTCATTTTGGAAC+GGG | + | chr1_3:818658-818677 | None:intergenic | 40.0% |
| ! | TGCACTTCCATGAGTCATTT+TGG | + | chr1_3:818664-818683 | None:intergenic | 40.0% |
| GGATAACACATTCAGACAGA+GGG | + | chr1_3:818706-818725 | None:intergenic | 40.0% | |
| TGGATAACACATTCAGACAG+AGG | + | chr1_3:818707-818726 | None:intergenic | 40.0% | |
| GAACAAAGGAAAGTCCAACA+TGG | + | chr1_3:818867-818886 | None:intergenic | 40.0% | |
| AGACTGGAGTGACAATAATG+TGG | - | chr1_3:818910-818929 | Msa0095550:CDS | 40.0% | |
| GACTGGAGTGACAATAATGT+GGG | - | chr1_3:818911-818930 | Msa0095550:CDS | 40.0% | |
| ATGTGGGACATAACTGTTGT+TGG | - | chr1_3:818927-818946 | Msa0095550:CDS | 40.0% | |
| GGACATAACTGTTGTTGGAT+GGG | - | chr1_3:818932-818951 | Msa0095550:CDS | 40.0% | |
| GAAAACTGGAGCATGGAAGA+GGG | + | chr1_3:817130-817149 | None:intergenic | 45.0% | |
| AGAAAACTGGAGCATGGAAG+AGG | + | chr1_3:817131-817150 | None:intergenic | 45.0% | |
| ! | TCTTCCATGCTCCAGTTTTC+TGG | - | chr1_3:817130-817149 | Msa0095550:intron | 45.0% |
| TTTGCCAGAAAACTGGAGCA+TGG | + | chr1_3:817137-817156 | None:intergenic | 45.0% | |
| TTCTGGCAAATTCTCGTTGC+CGG | - | chr1_3:817147-817166 | Msa0095550:intron | 45.0% | |
| ! | TCTTCCCTGATCGGATTTTC+CGG | + | chr1_3:817169-817188 | None:intergenic | 45.0% |
| GCATTCATCGGTATCACTCA+TGG | + | chr1_3:817194-817213 | None:intergenic | 45.0% | |
| GTACCTTCATGTGCTCTACT+TGG | + | chr1_3:817557-817576 | None:intergenic | 45.0% | |
| TAGAGATAAGGAAGGTCGAC+CGG | - | chr1_3:817739-817758 | Msa0095550:intron | 45.0% | |
| !!! | AGTTTTAGAGGTGGGGTTGA+TGG | - | chr1_3:817890-817909 | Msa0095550:intron | 45.0% |
| ! | CACAAGAGCCTTTTTGCTGA+CGG | + | chr1_3:817975-817994 | None:intergenic | 45.0% |
| TCATCCTTGCAAGACCACAA+AGG | - | chr1_3:818250-818269 | Msa0095550:intron | 45.0% | |
| CATCCTTGCAAGACCACAAA+GGG | - | chr1_3:818251-818270 | Msa0095550:intron | 45.0% | |
| AGAATTGGTGTGACCCTTTG+TGG | + | chr1_3:818267-818286 | None:intergenic | 45.0% | |
| TTGTTGAGCACCTCATTGAC+AGG | + | chr1_3:818513-818532 | None:intergenic | 45.0% | |
| !!! | CCATGAGTCATTTTGGAACG+GGG | + | chr1_3:818657-818676 | None:intergenic | 45.0% |
| GGGACATAACTGTTGTTGGA+TGG | - | chr1_3:818931-818950 | Msa0095550:CDS | 45.0% | |
| CATAACTGTTGTTGGATGGG+AGG | - | chr1_3:818935-818954 | Msa0095550:CDS | 45.0% | |
| TGGATGGGAGGTGATTTACA+AGG | - | chr1_3:818947-818966 | Msa0095550:CDS | 45.0% | |
| TGCTGTCACCAACAACACTT+TGG | + | chr1_3:819022-819041 | None:intergenic | 45.0% | |
| GAAAACTGGAGCATGGAAGA+GGG | + | chr1_3:817130-817149 | None:intergenic | 45.0% | |
| AGAAAACTGGAGCATGGAAG+AGG | + | chr1_3:817131-817150 | None:intergenic | 45.0% | |
| ! | TCTTCCATGCTCCAGTTTTC+TGG | - | chr1_3:817130-817149 | Msa0095550:intron | 45.0% |
| TTTGCCAGAAAACTGGAGCA+TGG | + | chr1_3:817137-817156 | None:intergenic | 45.0% | |
| TTCTGGCAAATTCTCGTTGC+CGG | - | chr1_3:817147-817166 | Msa0095550:intron | 45.0% | |
| ! | TCTTCCCTGATCGGATTTTC+CGG | + | chr1_3:817169-817188 | None:intergenic | 45.0% |
| GCATTCATCGGTATCACTCA+TGG | + | chr1_3:817194-817213 | None:intergenic | 45.0% | |
| GTACCTTCATGTGCTCTACT+TGG | + | chr1_3:817557-817576 | None:intergenic | 45.0% | |
| TAGAGATAAGGAAGGTCGAC+CGG | - | chr1_3:817739-817758 | Msa0095550:intron | 45.0% | |
| !!! | AGTTTTAGAGGTGGGGTTGA+TGG | - | chr1_3:817890-817909 | Msa0095550:intron | 45.0% |
| ! | CACAAGAGCCTTTTTGCTGA+CGG | + | chr1_3:817975-817994 | None:intergenic | 45.0% |
| TCATCCTTGCAAGACCACAA+AGG | - | chr1_3:818250-818269 | Msa0095550:intron | 45.0% | |
| CATCCTTGCAAGACCACAAA+GGG | - | chr1_3:818251-818270 | Msa0095550:intron | 45.0% | |
| AGAATTGGTGTGACCCTTTG+TGG | + | chr1_3:818267-818286 | None:intergenic | 45.0% | |
| TTGTTGAGCACCTCATTGAC+AGG | + | chr1_3:818513-818532 | None:intergenic | 45.0% | |
| !!! | CCATGAGTCATTTTGGAACG+GGG | + | chr1_3:818657-818676 | None:intergenic | 45.0% |
| GGGACATAACTGTTGTTGGA+TGG | - | chr1_3:818931-818950 | Msa0095550:CDS | 45.0% | |
| CATAACTGTTGTTGGATGGG+AGG | - | chr1_3:818935-818954 | Msa0095550:CDS | 45.0% | |
| TGGATGGGAGGTGATTTACA+AGG | - | chr1_3:818947-818966 | Msa0095550:CDS | 45.0% | |
| TGCTGTCACCAACAACACTT+TGG | + | chr1_3:819022-819041 | None:intergenic | 45.0% | |
| GTTGCCGGAAAATCCGATCA+GGG | - | chr1_3:817162-817181 | Msa0095550:intron | 50.0% | |
| GGAAAATCCGATCAGGGAAG+AGG | - | chr1_3:817168-817187 | Msa0095550:CDS | 50.0% | |
| CACCAAGTCCTGCAGAGATT+AGG | - | chr1_3:817378-817397 | Msa0095550:intron | 50.0% | |
| AGCCTAATCTCTGCAGGACT+TGG | + | chr1_3:817383-817402 | None:intergenic | 50.0% | |
| CTCTTGAGCCTAATCTCTGC+AGG | + | chr1_3:817389-817408 | None:intergenic | 50.0% | |
| GCTCAACTCCGTCAGCAAAA+AGG | - | chr1_3:817964-817983 | Msa0095550:intron | 50.0% | |
| ! | TGACCCTTTGTGGTCTTGCA+AGG | + | chr1_3:818257-818276 | None:intergenic | 50.0% |
| GGGTCACACCAATTCTTCTC+AGG | - | chr1_3:818271-818290 | Msa0095550:CDS | 50.0% | |
| ATCCAGCTGGAAGATGCTCT+GGG | + | chr1_3:818392-818411 | None:intergenic | 50.0% | |
| TATCCAGCTGGAAGATGCTC+TGG | + | chr1_3:818393-818412 | None:intergenic | 50.0% | |
| GAGCATCTTCCAGCTGGATA+TGG | - | chr1_3:818393-818412 | Msa0095550:CDS | 50.0% | |
| CATCTTCCAGCTGGATATGG+TGG | - | chr1_3:818396-818415 | Msa0095550:CDS | 50.0% | |
| CTTAGACCACCATATCCAGC+TGG | + | chr1_3:818405-818424 | None:intergenic | 50.0% | |
| CAGCTGGATATGGTGGTCTA+AGG | - | chr1_3:818403-818422 | Msa0095550:CDS | 50.0% | |
| CTGGATATGGTGGTCTAAGG+AGG | - | chr1_3:818406-818425 | Msa0095550:CDS | 50.0% | |
| !!! | AGTCATTTTGGAACGGGGCT+AGG | + | chr1_3:818652-818671 | None:intergenic | 50.0% |
| CCCCGTTCCAAAATGACTCA+TGG | - | chr1_3:818654-818673 | Msa0095550:CDS | 50.0% | |
| GTTGCCGGAAAATCCGATCA+GGG | - | chr1_3:817162-817181 | Msa0095550:intron | 50.0% | |
| GGAAAATCCGATCAGGGAAG+AGG | - | chr1_3:817168-817187 | Msa0095550:CDS | 50.0% | |
| CACCAAGTCCTGCAGAGATT+AGG | - | chr1_3:817378-817397 | Msa0095550:intron | 50.0% | |
| AGCCTAATCTCTGCAGGACT+TGG | + | chr1_3:817383-817402 | None:intergenic | 50.0% | |
| CTCTTGAGCCTAATCTCTGC+AGG | + | chr1_3:817389-817408 | None:intergenic | 50.0% | |
| GCTCAACTCCGTCAGCAAAA+AGG | - | chr1_3:817964-817983 | Msa0095550:intron | 50.0% | |
| ! | TGACCCTTTGTGGTCTTGCA+AGG | + | chr1_3:818257-818276 | None:intergenic | 50.0% |
| GGGTCACACCAATTCTTCTC+AGG | - | chr1_3:818271-818290 | Msa0095550:CDS | 50.0% | |
| ATCCAGCTGGAAGATGCTCT+GGG | + | chr1_3:818392-818411 | None:intergenic | 50.0% | |
| TATCCAGCTGGAAGATGCTC+TGG | + | chr1_3:818393-818412 | None:intergenic | 50.0% | |
| GAGCATCTTCCAGCTGGATA+TGG | - | chr1_3:818393-818412 | Msa0095550:CDS | 50.0% | |
| CATCTTCCAGCTGGATATGG+TGG | - | chr1_3:818396-818415 | Msa0095550:CDS | 50.0% | |
| CTTAGACCACCATATCCAGC+TGG | + | chr1_3:818405-818424 | None:intergenic | 50.0% | |
| CAGCTGGATATGGTGGTCTA+AGG | - | chr1_3:818403-818422 | Msa0095550:CDS | 50.0% | |
| CTGGATATGGTGGTCTAAGG+AGG | - | chr1_3:818406-818425 | Msa0095550:CDS | 50.0% | |
| !!! | AGTCATTTTGGAACGGGGCT+AGG | + | chr1_3:818652-818671 | None:intergenic | 50.0% |
| CCCCGTTCCAAAATGACTCA+TGG | - | chr1_3:818654-818673 | Msa0095550:CDS | 50.0% | |
| TGGGGAGGGATCAGGAAAGA+TGG | + | chr1_3:817098-817117 | None:intergenic | 55.0% | |
| ! | TGGAAGAGGGTGCAGAGGAT+GGG | + | chr1_3:817117-817136 | None:intergenic | 55.0% |
| ! | ATGGAAGAGGGTGCAGAGGA+TGG | + | chr1_3:817118-817137 | None:intergenic | 55.0% |
| CGTTGCCGGAAAATCCGATC+AGG | - | chr1_3:817161-817180 | Msa0095550:intron | 55.0% | |
| CTCATGGCCTCTTCCCTGAT+CGG | + | chr1_3:817178-817197 | None:intergenic | 55.0% | |
| TGGGGAGGGATCAGGAAAGA+TGG | + | chr1_3:817098-817117 | None:intergenic | 55.0% | |
| ! | TGGAAGAGGGTGCAGAGGAT+GGG | + | chr1_3:817117-817136 | None:intergenic | 55.0% |
| ! | ATGGAAGAGGGTGCAGAGGA+TGG | + | chr1_3:817118-817137 | None:intergenic | 55.0% |
| CGTTGCCGGAAAATCCGATC+AGG | - | chr1_3:817161-817180 | Msa0095550:intron | 55.0% | |
| CTCATGGCCTCTTCCCTGAT+CGG | + | chr1_3:817178-817197 | None:intergenic | 55.0% | |
| ! | GGAAGAGGGTGCAGAGGATG+GGG | + | chr1_3:817116-817135 | None:intergenic | 60.0% |
| ! | GAGCATGGAAGAGGGTGCAG+AGG | + | chr1_3:817122-817141 | None:intergenic | 60.0% |
| ! | GGAAGAGGGTGCAGAGGATG+GGG | + | chr1_3:817116-817135 | None:intergenic | 60.0% |
| ! | GAGCATGGAAGAGGGTGCAG+AGG | + | chr1_3:817122-817141 | None:intergenic | 60.0% |
| GCAGAGGATGGGGAGGGATC+AGG | + | chr1_3:817106-817125 | None:intergenic | 65.0% | |
| ! | GAGGGTGCAGAGGATGGGGA+GGG | + | chr1_3:817112-817131 | None:intergenic | 65.0% |
| ! | AGAGGGTGCAGAGGATGGGG+AGG | + | chr1_3:817113-817132 | None:intergenic | 65.0% |
| ! | GGCCCAGAGCATCTTCCAGC+TGG | - | chr1_3:818387-818406 | Msa0095550:CDS | 65.0% |
| GCAGAGGATGGGGAGGGATC+AGG | + | chr1_3:817106-817125 | None:intergenic | 65.0% | |
| ! | GAGGGTGCAGAGGATGGGGA+GGG | + | chr1_3:817112-817131 | None:intergenic | 65.0% |
| ! | AGAGGGTGCAGAGGATGGGG+AGG | + | chr1_3:817113-817132 | None:intergenic | 65.0% |
| ! | GGCCCAGAGCATCTTCCAGC+TGG | - | chr1_3:818387-818406 | Msa0095550:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 817018 | 819268 | 817018 | ID=Msa0095550;Name=Msa0095550 |
| chr1_3 | mRNA | 817018 | 819268 | 817018 | ID=Msa0095550-mRNA-1;Parent=Msa0095550;Name=Msa0095550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=266|0.75|0.6|1|1|1|5|0|421 |
| chr1_3 | exon | 817018 | 817057 | 817018 | ID=Msa0095550-mRNA-1:exon:63;Parent=Msa0095550-mRNA-1 |
| chr1_3 | exon | 817166 | 817374 | 817166 | ID=Msa0095550-mRNA-1:exon:62;Parent=Msa0095550-mRNA-1 |
| chr1_3 | exon | 817765 | 817906 | 817765 | ID=Msa0095550-mRNA-1:exon:61;Parent=Msa0095550-mRNA-1 |
| chr1_3 | exon | 817994 | 818118 | 817994 | ID=Msa0095550-mRNA-1:exon:60;Parent=Msa0095550-mRNA-1 |
| chr1_3 | exon | 818253 | 819268 | 818253 | ID=Msa0095550-mRNA-1:exon:59;Parent=Msa0095550-mRNA-1 |
| chr1_3 | five_prime_UTR | 819003 | 819268 | 819003 | ID=Msa0095550-mRNA-1:five_prime_utr;Parent=Msa0095550-mRNA-1 |
| chr1_3 | CDS | 818253 | 819002 | 818253 | ID=Msa0095550-mRNA-1:cds;Parent=Msa0095550-mRNA-1 |
| chr1_3 | CDS | 817994 | 818118 | 817994 | ID=Msa0095550-mRNA-1:cds;Parent=Msa0095550-mRNA-1 |
| chr1_3 | CDS | 817765 | 817906 | 817765 | ID=Msa0095550-mRNA-1:cds;Parent=Msa0095550-mRNA-1 |
| chr1_3 | CDS | 817166 | 817374 | 817166 | ID=Msa0095550-mRNA-1:cds;Parent=Msa0095550-mRNA-1 |
| chr1_3 | CDS | 817018 | 817057 | 817018 | ID=Msa0095550-mRNA-1:cds;Parent=Msa0095550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
