AlfalfaGEDB | Msa0055150

M. sativa cultivar zhongmu-4 / Msa0055150

KEGG: K00417
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005773 GO:0005774 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0017004 GO:0017062 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033108 GO:0034551 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0070069 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204
PFAM: PF02271.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055150	XP_003588718.1	100.000	122	0	0	1	122	1	122	7.85e-83	248

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055150	sp\|F4JWS8\|QCR72_ARATH	79.508	122	25	0	1	122	1	122	2.67e-68	204

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055150	B7FGY5	100.000	122	0	0	1	122	1	122	3.75e-83	248

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0055150	-0.813519	2.457349e-51	-8.615850e-47
Msa0004060	Msa0055150	0.860266	2.328805e-63	-8.615850e-47
Msa0006880	Msa0055150	0.965966	2.701163e-125	-8.615850e-47
Msa0007850	Msa0055150	0.832045	1.182454e-55	-8.615850e-47
Msa0008090	Msa0055150	0.823753	1.168960e-53	-8.615850e-47
Msa0008410	Msa0055150	0.839005	2.052246e-57	-8.615850e-47
Msa0008840	Msa0055150	0.838933	2.141642e-57	-8.615850e-47
Msa0010490	Msa0055150	0.812949	3.276335e-51	-8.615850e-47
Msa0010500	Msa0055150	0.821296	4.354173e-53	-8.615850e-47
Msa0015140	Msa0055150	0.841340	5.042835e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055150	MtrunA17_Chr1g0148991	100.000	122	0	0	1	122	1	122	7.22e-87	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055150	AT5G25450.1	79.508	122	25	0	1	122	1	122	2.71e-69	204
Msa0055150	AT4G32470.1	77.869	122	27	0	1	122	1	122	1.59e-67	199
Msa0055150	AT5G25450.2	68.852	122	22	1	1	122	1	106	1.63e-54	166
Msa0055150	AT4G32470.2	77.000	100	23	0	1	100	1	100	8.51e-54	164
Msa0055150	AT5G25450.3	75.294	85	21	0	1	85	1	85	3.47e-43	137

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Find 64 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCGTGATTGCAATT+TGG	0.374270	1_2:-10039242	Msa0055150:three_prime_UTR
AAACACCCCAAAACATGACT+TGG	0.463582	1_2:+10039316	None:intergenic
AAACCAACCTGAAGATCCTC+AGG	0.545207	1_2:+10043007	None:intergenic
AAAGATGGAGTGATTGTTCA+AGG	0.477184	1_2:-10039441	Msa0055150:three_prime_UTR
AACACCCCAAAACATGACTT+GGG	0.568072	1_2:+10039317	None:intergenic
AACCCTTCCATAAGTGCATT+GGG	0.480215	1_2:-10039777	Msa0055150:exon
AATGATTCCAATAAAGACAA+TGG	0.521916	1_2:+10039533	None:intergenic
ACATATATATCCCCTGCGAA+TGG	0.582188	1_2:-10039158	Msa0055150:three_prime_UTR
ACCATTCAGGAGCTACCTTC+AGG	0.525111	1_2:-10041906	Msa0055150:CDS
ACCGTATTTGCGAAGACGTT+TGG	0.293147	1_2:+10043258	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTAGATCCAAAGAAAAAC+TGG	-	chr1_2:10039315-10039334	Msa0055150:three_prime_UTR	30.0%
CTAGATGAAGCTTGATAAAT+TGG	-	chr1_2:10039706-10039725	Msa0055150:three_prime_UTR	30.0%
AAATTGGTTGAAAACTGTTG+TGG	-	chr1_2:10039722-10039741	Msa0055150:three_prime_UTR	30.0%
AATTGGTTGAAAACTGTTGT+GGG	-	chr1_2:10039723-10039742	Msa0055150:three_prime_UTR	30.0%
AATAGATAAACACATCCACA+AGG	+	chr1_2:10040011-10040030	None:intergenic	30.0%
TGGATGTGTTTATCTATTGA+CGG	-	chr1_2:10040013-10040032	Msa0055150:intron	30.0%
TGTTTATCTATTGACGGAAA+TGG	-	chr1_2:10040019-10040038	Msa0055150:intron	30.0%
AAAATAAGAAAAACTCCCAG+AGG	+	chr1_2:10040267-10040286	None:intergenic	30.0%
AGTAACTAATTGTGTGATTG+TGG	-	chr1_2:10040807-10040826	Msa0055150:intron	30.0%
GTAACTAATTGTGTGATTGT+GGG	-	chr1_2:10040808-10040827	Msa0055150:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	10039130	10043516	10039130	ID=Msa0055150;Name=Msa0055150
chr1_2	mRNA	10039130	10043516	10039130	ID=Msa0055150-mRNA-1;Parent=Msa0055150;Name=Msa0055150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=163\|1\|1\|1\|0.66\|1\|4\|657\|122
chr1_2	exon	10039130	10039855	10039130	ID=Msa0055150-mRNA-1:exon:3791;Parent=Msa0055150-mRNA-1
chr1_2	exon	10041892	10041939	10041892	ID=Msa0055150-mRNA-1:exon:3790;Parent=Msa0055150-mRNA-1
chr1_2	exon	10043015	10043172	10043015	ID=Msa0055150-mRNA-1:exon:3789;Parent=Msa0055150-mRNA-1
chr1_2	exon	10043260	10043516	10043260	ID=Msa0055150-mRNA-1:exon:3788;Parent=Msa0055150-mRNA-1
chr1_2	five_prime_UTR	10043354	10043516	10043354	ID=Msa0055150-mRNA-1:five_prime_utr;Parent=Msa0055150-mRNA-1
chr1_2	CDS	10043260	10043353	10043260	ID=Msa0055150-mRNA-1:cds;Parent=Msa0055150-mRNA-1
chr1_2	CDS	10043015	10043172	10043015	ID=Msa0055150-mRNA-1:cds;Parent=Msa0055150-mRNA-1
chr1_2	CDS	10041892	10041939	10041892	ID=Msa0055150-mRNA-1:cds;Parent=Msa0055150-mRNA-1
chr1_2	CDS	10039787	10039855	10039787	ID=Msa0055150-mRNA-1:cds;Parent=Msa0055150-mRNA-1
chr1_2	three_prime_UTR	10039130	10039786	10039130	ID=Msa0055150-mRNA-1:three_prime_utr;Parent=Msa0055150-mRNA-1

Gene Sequence	>Msa0055150 ATGGCGTCTTTGCTACAAGCGATTGTAGATCCAAAGAAAAACTGGTTCGCTGCTCAACACATGAAAGCTGTTTCCAAACGTCTTCGCAAATACGGGTTACGATATGATGATCTGTATGATCCGTATTACGATTTGGATATTAAGGAGGCTTTGAATCGGCTTCCAAAGGAGGTTGTTGATGCTCGTCATGCTCGTCTTAAGCGTGCTATTGATCTTTCCATGAAGCATGAGTATCTTCCTGAGGATCTTCAGGCAATGCAAACACCATTCAGGAGCTACCTTCAGGATATGCTGACCTTTGTGAAGAGGGAACGAGCAGAGCGTGAAGCATTGGGAGGTTTGCCCCTGTATCAACGAACCCTTCCATAA
Protein sequence	>Msa0055150 MASLLQAIVDPKKNWFAAQHMKAVSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPKEVVDARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFVKRERAEREALGGLPLYQRTLP*