AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0055150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055150 MtrunA17_Chr1g0148991 100.000 122 0 0 1 122 1 122 7.22e-87 248
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055150 AT5G25450.1 79.508 122 25 0 1 122 1 122 2.71e-69 204
Msa0055150 AT4G32470.1 77.869 122 27 0 1 122 1 122 1.59e-67 199
Msa0055150 AT5G25450.2 68.852 122 22 1 1 122 1 106 1.63e-54 166
Msa0055150 AT4G32470.2 77.000 100 23 0 1 100 1 100 8.51e-54 164
Msa0055150 AT5G25450.3 75.294 85 21 0 1 85 1 85 3.47e-43 137

Find 64 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTGCCTTTATAATTTA+TGG 0.035401 1_2:-10039574 Msa0055150:three_prime_UTR
ACTAAACCCAAGTCATGTTT+TGG 0.262731 1_2:-10039323 Msa0055150:three_prime_UTR
GTATTACGATTTGGATATTA+AGG 0.274133 1_2:-10043122 Msa0055150:CDS
TATTGGAATCATTTCTTGTT+TGG 0.281572 1_2:-10039523 Msa0055150:three_prime_UTR
TGCTGTTTGTGATGTTCTAT+TGG 0.286227 1_2:-10039402 Msa0055150:three_prime_UTR
AGCTTTGATGAATCCTTATA+TGG 0.292613 1_2:-10039662 Msa0055150:three_prime_UTR
ACCGTATTTGCGAAGACGTT+TGG 0.293147 1_2:+10043258 None:intergenic
GATATATACTTGTTGAGTTT+AGG 0.317531 1_2:+10039119 None:intergenic
AGCGAGCGAGCGAGTATAAT+TGG 0.332517 1_2:-10043472 Msa0055150:five_prime_UTR
GTATCTTCCTGAGGATCTTC+AGG 0.339636 1_2:-10043014 Msa0055150:intron
ATGGAAGGGTTCGTTGATAC+AGG 0.347740 1_2:+10039789 None:intergenic
GCTCTATCTTTCTTCCATCT+TGG 0.353908 1_2:+10039211 None:intergenic
GTATGATCCGTATTACGATT+TGG 0.362212 1_2:-10043131 Msa0055150:CDS
GTGCTGTAAACTTCCCTCTT+GGG 0.363610 1_2:-10039625 Msa0055150:three_prime_UTR
GGTGCTGTAAACTTCCCTCT+TGG 0.368585 1_2:-10039626 Msa0055150:three_prime_UTR
TGTAGGGATGTATCTCAAAC+AGG 0.373729 1_2:+10039180 None:intergenic
AAAATGTCGTGATTGCAATT+TGG 0.374270 1_2:-10039242 Msa0055150:three_prime_UTR
TCCAAACGTCTTCGCAAATA+CGG 0.376472 1_2:-10043259 Msa0055150:intron
TGACTTGGGTTTAGTAATTA+CGG 0.384123 1_2:+10039331 None:intergenic
ACTATTGTGGTAGAATGTTT+TGG 0.384621 1_2:-10039705 Msa0055150:three_prime_UTR
ATGCAAGCCATAAATTATAA+AGG 0.391641 1_2:+10039567 None:intergenic
GATACTACCCAATGCACTTA+TGG 0.397492 1_2:+10039770 None:intergenic
TTTGGTTGATGATGAAATCT+TGG 0.409251 1_2:-10039687 Msa0055150:three_prime_UTR
CGAGCATCAACAACCTCCTT+TGG 0.426514 1_2:+10043082 None:intergenic
ATCTTTCTTCCATCTTGGCA+TGG 0.434373 1_2:+10039216 None:intergenic
CGAGCAGAGCGTGAAGCATT+GGG 0.452428 1_2:-10039821 Msa0055150:CDS
AAACACCCCAAAACATGACT+TGG 0.463582 1_2:+10039316 None:intergenic
ACGAGCAGAGCGTGAAGCAT+TGG 0.467463 1_2:-10039822 Msa0055150:CDS
AGGAAGATACTCATGCTTCA+TGG 0.469418 1_2:+10043027 None:intergenic
TTAATATCCAAATCGTAATA+CGG 0.475035 1_2:+10043124 None:intergenic
AAAGATGGAGTGATTGTTCA+AGG 0.477184 1_2:-10039441 Msa0055150:three_prime_UTR
AGGCAATGCAAACACCATTC+AGG 0.479539 1_2:-10041919 Msa0055150:CDS
AACCCTTCCATAAGTGCATT+GGG 0.480215 1_2:-10039777 Msa0055150:exon
AGACTTACCAAAATAAAAGA+TGG 0.500296 1_2:-10039456 Msa0055150:three_prime_UTR
ATGATTCCAATAAAGACAAT+GGG 0.502666 1_2:+10039534 None:intergenic
ATCCTGTAAAATAAAATTTG+TGG 0.510918 1_2:-10039275 Msa0055150:three_prime_UTR
GAACCCTTCCATAAGTGCAT+TGG 0.516854 1_2:-10039778 Msa0055150:exon
AATGATTCCAATAAAGACAA+TGG 0.521916 1_2:+10039533 None:intergenic
ACCATTCAGGAGCTACCTTC+AGG 0.525111 1_2:-10041906 Msa0055150:CDS
CATAAATTATAAAGGCAAGC+AGG 0.528208 1_2:+10039575 None:intergenic
TCCTGAAGGTAGCTCCTGAA+TGG 0.529425 1_2:+10041905 None:intergenic
GGCTTTGAATCGGCTTCCAA+AGG 0.532273 1_2:-10043098 Msa0055150:CDS
ATATTAAGGAGGCTTTGAAT+CGG 0.539685 1_2:-10043108 Msa0055150:CDS
CGCAGGGGATATATATGTGT+AGG 0.545037 1_2:+10039163 None:intergenic
TGGAAGGGTTCGTTGATACA+GGG 0.545179 1_2:+10039790 None:intergenic
AAACCAACCTGAAGATCCTC+AGG 0.545207 1_2:+10043007 None:intergenic
GTTAAAATGTACTACTATTG+TGG 0.547187 1_2:-10039718 Msa0055150:three_prime_UTR
TGTAAAATAAAATTTGTGGT+TGG 0.562027 1_2:-10039271 Msa0055150:three_prime_UTR
TTTGAATCGGCTTCCAAAGG+AGG 0.563776 1_2:-10043095 Msa0055150:CDS
CTACCCAATGCACTTATGGA+AGG 0.567459 1_2:+10039774 None:intergenic
AACACCCCAAAACATGACTT+GGG 0.568072 1_2:+10039317 None:intergenic
TTCTATTGGCGTGCGAAATG+TGG 0.569746 1_2:-10039388 Msa0055150:three_prime_UTR
ACATATATATCCCCTGCGAA+TGG 0.582188 1_2:-10039158 Msa0055150:three_prime_UTR
TTACGATTTGGATATTAAGG+AGG 0.584001 1_2:-10043119 Msa0055150:CDS
GCAGGGGATATATATGTGTA+GGG 0.593915 1_2:+10039164 None:intergenic
ATTTGGTGTCCATGCCAAGA+TGG 0.612707 1_2:-10039225 Msa0055150:three_prime_UTR
TACCCAATGCACTTATGGAA+GGG 0.614254 1_2:+10039775 None:intergenic
TTTATTAGAAAATGCCCAAG+AGG 0.624070 1_2:+10039611 None:intergenic
CAAAGGTCAGCATATCCTGA+AGG 0.627878 1_2:+10041891 None:intergenic
TTATTAGAAAATGCCCAAGA+GGG 0.630597 1_2:+10039612 None:intergenic
GGAAGGGTTCGTTGATACAG+GGG 0.637021 1_2:+10039791 None:intergenic
GCAGAGCGTGAAGCATTGGG+AGG 0.668632 1_2:-10039818 Msa0055150:CDS
GAAGCATGAGTATCTTCCTG+AGG 0.684541 1_2:-10043023 Msa0055150:CDS
GTAGGGATGTATCTCAAACA+GGG 0.704220 1_2:+10039181 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTATTTTAATTTAAACT+AGG - chr1_2:10040277-10040296 Msa0055150:intron 10.0%
!!! TCTTATTTTAATTTAAACTA+GGG - chr1_2:10040278-10040297 Msa0055150:intron 10.0%
!! AACAAATGTTTAATAAAAAA+AGG + chr1_2:10040888-10040907 None:intergenic 10.0%
!! AAATACAATTTCACAAATTA+GGG + chr1_2:10039439-10039458 None:intergenic 15.0%
!!! AATACAAAATTGAATGTTTT+TGG - chr1_2:10039656-10039675 Msa0055150:three_prime_UTR 15.0%
!!! TGTTTTGATATAACATTATA+TGG - chr1_2:10040837-10040856 Msa0055150:intron 15.0%
!!! TATACAAATCTTTGAAAATA+AGG + chr1_2:10041282-10041301 None:intergenic 15.0%
!!! TTATTTTCAAAGATTTGTAT+AGG - chr1_2:10041281-10041300 Msa0055150:intron 15.0%
!!! CAATATTTTTGTAATTCATT+GGG - chr1_2:10041390-10041409 Msa0055150:intron 15.0%
!! TATTTAACATGTTAACTAAT+AGG - chr1_2:10042160-10042179 Msa0055150:intron 15.0%
!! ATTTAACATGTTAACTAATA+GGG - chr1_2:10042161-10042180 Msa0055150:intron 15.0%
!!! GAAATGATTTTATAATTGTT+TGG + chr1_2:10042278-10042297 None:intergenic 15.0%
!! CAAAAAAAAAAACTCAACAA+TGG - chr1_2:10039274-10039293 Msa0055150:three_prime_UTR 20.0%
!! AAAAAACGAAATGAAGATTT+AGG + chr1_2:10039404-10039423 None:intergenic 20.0%
!! CAAATACAATTTCACAAATT+AGG + chr1_2:10039440-10039459 None:intergenic 20.0%
!!! TGTATTTGATTTGTGAAATT+AGG - chr1_2:10039452-10039471 Msa0055150:three_prime_UTR 20.0%
!!! GTATTTGATTTGTGAAATTA+GGG - chr1_2:10039453-10039472 Msa0055150:three_prime_UTR 20.0%
!! TTAATATCCAAATCGTAATA+CGG + chr1_2:10039503-10039522 None:intergenic 20.0%
!! TTTATTTCATTTCACATTTG+AGG - chr1_2:10040132-10040151 Msa0055150:intron 20.0%
!! GATAAGATTGAAGTATATTT+GGG + chr1_2:10040972-10040991 None:intergenic 20.0%
!!! TCATTTGATTACTATTTTCA+AGG + chr1_2:10041355-10041374 None:intergenic 20.0%
!! TCAAATGAAGAAGAAAAAAA+AGG - chr1_2:10041367-10041386 Msa0055150:intron 20.0%
!!! GCAATATTTTTGTAATTCAT+TGG - chr1_2:10041389-10041408 Msa0055150:intron 20.0%
!! TAAAATCTAACAAGTAAGAT+GGG + chr1_2:10042418-10042437 None:intergenic 20.0%
!! ATAAAATCTAACAAGTAAGA+TGG + chr1_2:10042419-10042438 None:intergenic 20.0%
!!! TTAGATTTTATTTTGATGAG+TGG - chr1_2:10042428-10042447 Msa0055150:intron 20.0%
!! TTAGTAGGTAAAATTTATCT+GGG + chr1_2:10042541-10042560 None:intergenic 20.0%
!!! AATGTGGAATATTATTTTAC+AGG - chr1_2:10043252-10043271 Msa0055150:intron 20.0%
!! ATCCTGTAAAATAAAATTTG+TGG - chr1_2:10043349-10043368 Msa0055150:exon 20.0%
!!! AACCACAAATTTTATTTTAC+AGG + chr1_2:10043354-10043373 None:intergenic 20.0%
!! TGTAAAATAAAATTTGTGGT+TGG - chr1_2:10043353-10043372 Msa0055150:exon 20.0%
!! TTAAACCGAGAGAATTTTTA+GGG - chr1_2:10039180-10039199 Msa0055150:three_prime_UTR 25.0%
!! GTATTACGATTTGGATATTA+AGG - chr1_2:10039502-10039521 Msa0055150:three_prime_UTR 25.0%
!! TGTGTTTGTATTGATAGAAA+TGG - chr1_2:10039746-10039765 Msa0055150:three_prime_UTR 25.0%
! AAATTTATTGAAAGTCCTTG+TGG - chr1_2:10039993-10040012 Msa0055150:intron 25.0%
! AATAGAATCAAAAAACGAGA+TGG - chr1_2:10040056-10040075 Msa0055150:intron 25.0%
! ATAGAATCAAAAAACGAGAT+GGG - chr1_2:10040057-10040076 Msa0055150:intron 25.0%
! GAAATAAAATGCATTTCACA+AGG + chr1_2:10040120-10040139 None:intergenic 25.0%
!!! GGATAGTTTTACAATAAAAG+TGG + chr1_2:10040389-10040408 None:intergenic 25.0%
! ACACATTCTCATTTATTGTT+TGG + chr1_2:10040410-10040429 None:intergenic 25.0%
! GAAGATCTAAATATCTTGTT+TGG - chr1_2:10040593-10040612 Msa0055150:intron 25.0%
!! TAAATATCTTGTTTGGTATG+TGG - chr1_2:10040600-10040619 Msa0055150:intron 25.0%
! ACTGTCAAACATATAAAACA+AGG + chr1_2:10040765-10040784 None:intergenic 25.0%
! GGATAAGATTGAAGTATATT+TGG + chr1_2:10040973-10040992 None:intergenic 25.0%
! CAATCTAAGCAATGTATTTA+AGG + chr1_2:10040994-10041013 None:intergenic 25.0%
!! TGCTACTATATTTGTTGAAA+TGG + chr1_2:10041046-10041065 None:intergenic 25.0%
! CAAATATAGTAGCATAATTG+AGG - chr1_2:10041052-10041071 Msa0055150:intron 25.0%
! AGCAAATATGAACTAACAAA+AGG + chr1_2:10041145-10041164 None:intergenic 25.0%
! TCAAAGATTTGTATAGGAAA+AGG - chr1_2:10041287-10041306 Msa0055150:intron 25.0%
!! GTAAAATTTGAAGGGTTTTT+GGG + chr1_2:10041511-10041530 None:intergenic 25.0%
! TTAGTTGAATAGAAAATGAG+AGG + chr1_2:10042212-10042231 None:intergenic 25.0%
! TTTCTATTCAACTAAATGAG+AGG - chr1_2:10042217-10042236 Msa0055150:intron 25.0%
!! TATTGCTATTACACTTAGTT+TGG + chr1_2:10042344-10042363 None:intergenic 25.0%
! CTTAGTAGGTAAAATTTATC+TGG + chr1_2:10042542-10042561 None:intergenic 25.0%
!!! GTAGCAAAAAGTGTTATTTT+TGG - chr1_2:10042705-10042724 Msa0055150:intron 25.0%
! GTTAAAATGTACTACTATTG+TGG - chr1_2:10042906-10042925 Msa0055150:intron 25.0%
! AAAAAAATGTGGTCCATATA+AGG + chr1_2:10042978-10042997 None:intergenic 25.0%
!!! TTATATGGACCACATTTTTT+TGG - chr1_2:10042977-10042996 Msa0055150:intron 25.0%
! ATGCAAGCCATAAATTATAA+AGG + chr1_2:10043060-10043079 None:intergenic 25.0%
!! ATTTTACCCATTGTCTTTAT+TGG - chr1_2:10043084-10043103 Msa0055150:CDS 25.0%
! ATGATTCCAATAAAGACAAT+GGG + chr1_2:10043093-10043112 None:intergenic 25.0%
! AATGATTCCAATAAAGACAA+TGG + chr1_2:10043094-10043113 None:intergenic 25.0%
! TATTGGAATCATTTCTTGTT+TGG - chr1_2:10043101-10043120 Msa0055150:CDS 25.0%
! AGACTTACCAAAATAAAAGA+TGG - chr1_2:10043168-10043187 Msa0055150:intron 25.0%
!!! AATCACTCCATCTTTTATTT+TGG + chr1_2:10043178-10043197 None:intergenic 25.0%
! GTTAAACCGAGAGAATTTTT+AGG - chr1_2:10039179-10039198 Msa0055150:three_prime_UTR 30.0%
TTGTAGATCCAAAGAAAAAC+TGG - chr1_2:10039315-10039334 Msa0055150:three_prime_UTR 30.0%
! TTACGATTTGGATATTAAGG+AGG - chr1_2:10039505-10039524 Msa0055150:three_prime_UTR 30.0%
!! ATATTAAGGAGGCTTTGAAT+CGG - chr1_2:10039516-10039535 Msa0055150:three_prime_UTR 30.0%
CTAGATGAAGCTTGATAAAT+TGG - chr1_2:10039706-10039725 Msa0055150:three_prime_UTR 30.0%
AAATTGGTTGAAAACTGTTG+TGG - chr1_2:10039722-10039741 Msa0055150:three_prime_UTR 30.0%
AATTGGTTGAAAACTGTTGT+GGG - chr1_2:10039723-10039742 Msa0055150:three_prime_UTR 30.0%
AATAGATAAACACATCCACA+AGG + chr1_2:10040011-10040030 None:intergenic 30.0%
TGGATGTGTTTATCTATTGA+CGG - chr1_2:10040013-10040032 Msa0055150:intron 30.0%
TGTTTATCTATTGACGGAAA+TGG - chr1_2:10040019-10040038 Msa0055150:intron 30.0%
AAAATAAGAAAAACTCCCAG+AGG + chr1_2:10040267-10040286 None:intergenic 30.0%
! TCATTTTGCTTTCTCCAATT+TGG - chr1_2:10040320-10040339 Msa0055150:intron 30.0%
! TCCAATTTGGAGGTATAAAA+AGG - chr1_2:10040333-10040352 Msa0055150:intron 30.0%
! TCCTTTTTATACCTCCAAAT+TGG + chr1_2:10040337-10040356 None:intergenic 30.0%
! GATTTTCTGTGAACATACTT+TGG - chr1_2:10040533-10040552 Msa0055150:intron 30.0%
! ATAAAACAAGGCACTTACAA+AGG + chr1_2:10040753-10040772 None:intergenic 30.0%
AGTAACTAATTGTGTGATTG+TGG - chr1_2:10040807-10040826 Msa0055150:intron 30.0%
GTAACTAATTGTGTGATTGT+GGG - chr1_2:10040808-10040827 Msa0055150:intron 30.0%
AAAAAGGCAATCAAGAAGTA+TGG + chr1_2:10040872-10040891 None:intergenic 30.0%
GCTTAGATTGTTAGAAATCT+TGG - chr1_2:10041004-10041023 Msa0055150:intron 30.0%
! TTCATATTTGCTAGAGTAGA+TGG - chr1_2:10041153-10041172 Msa0055150:intron 30.0%
TTAACAGGGTATATGACTAA+TGG - chr1_2:10041434-10041453 Msa0055150:intron 30.0%
TTAATACCGTTTACTTGTGT+GGG + chr1_2:10041475-10041494 None:intergenic 30.0%
TTTAATACCGTTTACTTGTG+TGG + chr1_2:10041476-10041495 None:intergenic 30.0%
CAAGTAAACGGTATTAAACA+TGG - chr1_2:10041478-10041497 Msa0055150:intron 30.0%
! GGTAAAATTTGAAGGGTTTT+TGG + chr1_2:10041512-10041531 None:intergenic 30.0%
AAAGTGAAACTTCTAGACTA+GGG + chr1_2:10041534-10041553 None:intergenic 30.0%
TAAAGTGAAACTTCTAGACT+AGG + chr1_2:10041535-10041554 None:intergenic 30.0%
! ACTATAACGCATTGATAAGT+TGG - chr1_2:10041690-10041709 Msa0055150:intron 30.0%
TACATAGTTTCTGATGCATA+TGG - chr1_2:10041735-10041754 Msa0055150:intron 30.0%
ACATAGTTTCTGATGCATAT+GGG - chr1_2:10041736-10041755 Msa0055150:intron 30.0%
! TTTAGTAGAACTTTTGCACA+TGG - chr1_2:10041776-10041795 Msa0055150:intron 30.0%
TTGGATGCAGTTTAGATTTA+GGG - chr1_2:10041802-10041821 Msa0055150:intron 30.0%
GGAAATAGAAGAAAAGAAAG+TGG + chr1_2:10041832-10041851 None:intergenic 30.0%
TAGAAAAAACACCTAGATCA+AGG + chr1_2:10041879-10041898 None:intergenic 30.0%
AATTCAGAAGCAATAGCTTA+AGG + chr1_2:10041948-10041967 None:intergenic 30.0%
CACCATAAGAAATTTGTGAA+GGG - chr1_2:10042046-10042065 Msa0055150:intron 30.0%
ATCCCTTCACAAATTTCTTA+TGG + chr1_2:10042051-10042070 None:intergenic 30.0%
TTCATTGAATGGAATTCATG+TGG - chr1_2:10042492-10042511 Msa0055150:intron 30.0%
TCATTGAATGGAATTCATGT+GGG - chr1_2:10042493-10042512 Msa0055150:intron 30.0%
CATCACATATAGCAGTTATA+GGG + chr1_2:10042742-10042761 None:intergenic 30.0%
!!! GAAGCTATTTTGATTGGAAT+TGG - chr1_2:10042881-10042900 Msa0055150:intron 30.0%
! ACTATTGTGGTAGAATGTTT+TGG - chr1_2:10042919-10042938 Msa0055150:intron 30.0%
!! TTTGGTTGATGATGAAATCT+TGG - chr1_2:10042937-10042956 Msa0055150:intron 30.0%
! AGCTTTGATGAATCCTTATA+TGG - chr1_2:10042962-10042981 Msa0055150:intron 30.0%
TTTACAGCACCAAAAAAATG+TGG + chr1_2:10042989-10043008 None:intergenic 30.0%
TTATTAGAAAATGCCCAAGA+GGG + chr1_2:10043015-10043034 None:intergenic 30.0%
TTTATTAGAAAATGCCCAAG+AGG + chr1_2:10043016-10043035 None:intergenic 30.0%
! CTTGGGCATTTTCTAATAAA+TGG - chr1_2:10043016-10043035 Msa0055150:CDS 30.0%
CATAAATTATAAAGGCAAGC+AGG + chr1_2:10043052-10043071 None:intergenic 30.0%
CTGCTTGCCTTTATAATTTA+TGG - chr1_2:10043050-10043069 Msa0055150:CDS 30.0%
! TGACTTGGGTTTAGTAATTA+CGG + chr1_2:10043296-10043315 None:intergenic 30.0%
AAAATGTCGTGATTGCAATT+TGG - chr1_2:10043382-10043401 Msa0055150:five_prime_UTR 30.0%
TTCAGCCCTAAAAATTCTCT+CGG + chr1_2:10039188-10039207 None:intergenic 35.0%
GTATGATCCGTATTACGATT+TGG - chr1_2:10039493-10039512 Msa0055150:three_prime_UTR 35.0%
TTGATGTCTATACAACCACA+AGG - chr1_2:10040230-10040249 Msa0055150:intron 35.0%
! TTTTGCTTTCTCCAATTTGG+AGG - chr1_2:10040323-10040342 Msa0055150:intron 35.0%
CTATTTCATTGTACTGTCAC+TGG - chr1_2:10040433-10040452 Msa0055150:intron 35.0%
CCTGTCAAAAACAGATACAA+AGG + chr1_2:10040688-10040707 None:intergenic 35.0%
!!! CCTTTGTATCTGTTTTTGAC+AGG - chr1_2:10040685-10040704 Msa0055150:intron 35.0%
AAGACAATCAAGACAAGCAA+AGG + chr1_2:10040946-10040965 None:intergenic 35.0%
GAAAACAGAAATACAGACAC+AGG + chr1_2:10041211-10041230 None:intergenic 35.0%
!! CAGCAGAGTTTGTTTTCATT+GGG - chr1_2:10041317-10041336 Msa0055150:intron 35.0%
ACATATAGATGGGTCTTAAC+AGG - chr1_2:10041419-10041438 Msa0055150:intron 35.0%
CATATAGATGGGTCTTAACA+GGG - chr1_2:10041420-10041439 Msa0055150:intron 35.0%
TAATACCGTTTACTTGTGTG+GGG + chr1_2:10041474-10041493 None:intergenic 35.0%
GACTAGGGGTAAAATTTGAA+GGG + chr1_2:10041519-10041538 None:intergenic 35.0%
AGACTAGGGGTAAAATTTGA+AGG + chr1_2:10041520-10041539 None:intergenic 35.0%
AAGTGAAACTTCTAGACTAG+GGG + chr1_2:10041533-10041552 None:intergenic 35.0%
TGATTGCTATGTCTTTAGCA+GGG + chr1_2:10041566-10041585 None:intergenic 35.0%
ATGATTGCTATGTCTTTAGC+AGG + chr1_2:10041567-10041586 None:intergenic 35.0%
TGCTAAAGACATAGCAATCA+TGG - chr1_2:10041566-10041585 Msa0055150:intron 35.0%
GCTAAAGACATAGCAATCAT+GGG - chr1_2:10041567-10041586 Msa0055150:intron 35.0%
! AACGCATTGATAAGTTGGAT+TGG - chr1_2:10041695-10041714 Msa0055150:intron 35.0%
!! TGATAAGTTGGATTGGTTAC+TGG - chr1_2:10041702-10041721 Msa0055150:intron 35.0%
!! GATAAGTTGGATTGGTTACT+GGG - chr1_2:10041703-10041722 Msa0055150:intron 35.0%
GTTGGATGCAGTTTAGATTT+AGG - chr1_2:10041801-10041820 Msa0055150:intron 35.0%
ATCAAGGATACACACATAGA+TGG + chr1_2:10041863-10041882 None:intergenic 35.0%
TATGTGTGTATCCTTGATCT+AGG - chr1_2:10041865-10041884 Msa0055150:intron 35.0%
ATAGCTTAAGGTCTTCAACT+GGG + chr1_2:10041936-10041955 None:intergenic 35.0%
AATAGCTTAAGGTCTTCAAC+TGG + chr1_2:10041937-10041956 None:intergenic 35.0%
GACACATAATTCTACCATAG+TGG + chr1_2:10042011-10042030 None:intergenic 35.0%
CCTTCACAAATTTCTTATGG+TGG + chr1_2:10042048-10042067 None:intergenic 35.0%
CCACCATAAGAAATTTGTGA+AGG - chr1_2:10042045-10042064 Msa0055150:intron 35.0%
! AGTTTGGATGGTGATGAAAA+TGG + chr1_2:10042328-10042347 None:intergenic 35.0%
! GCTATTACACTTAGTTTGGA+TGG + chr1_2:10042340-10042359 None:intergenic 35.0%
!!! TTTATTTTGATGAGTGGTGC+TGG - chr1_2:10042434-10042453 Msa0055150:intron 35.0%
AAGAGTGAGTGCTAAAAAGA+GGG + chr1_2:10042473-10042492 None:intergenic 35.0%
AAAGAGTGAGTGCTAAAAAG+AGG + chr1_2:10042474-10042493 None:intergenic 35.0%
CATTGAATGGAATTCATGTG+GGG - chr1_2:10042494-10042513 Msa0055150:intron 35.0%
TCAACATTCACTCTCTTAGT+AGG + chr1_2:10042556-10042575 None:intergenic 35.0%
GCATCACATATAGCAGTTAT+AGG + chr1_2:10042743-10042762 None:intergenic 35.0%
! CTTTTCAACCCACAATTTTC+AGG - chr1_2:10042769-10042788 Msa0055150:intron 35.0%
!!! TCGCTTGAAGCTATTTTGAT+TGG - chr1_2:10042875-10042894 Msa0055150:intron 35.0%
AAAGATGGAGTGATTGTTCA+AGG - chr1_2:10043183-10043202 Msa0055150:intron 35.0%
! TGCTGTTTGTGATGTTCTAT+TGG - chr1_2:10043222-10043241 Msa0055150:intron 35.0%
! ACTAAACCCAAGTCATGTTT+TGG - chr1_2:10043301-10043320 Msa0055150:CDS 35.0%
! CTAAACCCAAGTCATGTTTT+GGG - chr1_2:10043302-10043321 Msa0055150:CDS 35.0%
! TAAACCCAAGTCATGTTTTG+GGG - chr1_2:10043303-10043322 Msa0055150:CDS 35.0%
! TTGCAATCACGACATTTTCA+GGG + chr1_2:10043380-10043399 None:intergenic 35.0%
! ATTGCAATCACGACATTTTC+AGG + chr1_2:10043381-10043400 None:intergenic 35.0%
TCCAAACGTCTTCGCAAATA+CGG - chr1_2:10039365-10039384 Msa0055150:three_prime_UTR 40.0%
AGGAAGATACTCATGCTTCA+TGG + chr1_2:10039600-10039619 None:intergenic 40.0%
CTTTCAATGGAATGTGTGTC+CGG + chr1_2:10039947-10039966 None:intergenic 40.0%
!! TGTAGCACTGACACTTTCAA+TGG + chr1_2:10039960-10039979 None:intergenic 40.0%
!! TGAAAGTGTCAGTGCTACAT+AGG - chr1_2:10039961-10039980 Msa0055150:intron 40.0%
!! GAAAGTGTCAGTGCTACATA+GGG - chr1_2:10039962-10039981 Msa0055150:intron 40.0%
AGCAAATGCTGTCTCAATTG+TGG - chr1_2:10040186-10040205 Msa0055150:intron 40.0%
AAGGTAGAGTTAGATCCTCT+GGG - chr1_2:10040249-10040268 Msa0055150:intron 40.0%
AGTGCAGACATAATCTCTAC+AGG - chr1_2:10040464-10040483 Msa0055150:intron 40.0%
CCAATGAAAACAAACTCTGC+TGG + chr1_2:10041319-10041338 None:intergenic 40.0%
!! CCAGCAGAGTTTGTTTTCAT+TGG - chr1_2:10041316-10041335 Msa0055150:intron 40.0%
AAGACCCATCTATATGTGCA+GGG + chr1_2:10041416-10041435 None:intergenic 40.0%
TAAGACCCATCTATATGTGC+AGG + chr1_2:10041417-10041436 None:intergenic 40.0%
! GAACTTTTGCACATGGAAGT+TGG - chr1_2:10041783-10041802 Msa0055150:intron 40.0%
! CACTGTCCAGTGTTGTTAAA+TGG - chr1_2:10041973-10041992 Msa0055150:intron 40.0%
! TGTCCAGTGTTGTTAAATGG+TGG - chr1_2:10041976-10041995 Msa0055150:intron 40.0%
TGACCACCATTTAACAACAC+TGG + chr1_2:10041982-10042001 None:intergenic 40.0%
! GTGTTGTTAAATGGTGGTCA+TGG - chr1_2:10041982-10042001 Msa0055150:intron 40.0%
AAAACCTGCCGTATAACCAA+TGG + chr1_2:10042091-10042110 None:intergenic 40.0%
! TTGGTTATACGGCAGGTTTT+TGG - chr1_2:10042091-10042110 Msa0055150:intron 40.0%
AGAGTGAGTGCTAAAAAGAG+GGG + chr1_2:10042472-10042491 None:intergenic 40.0%
GCACTCACTCTTTCATTGAA+TGG - chr1_2:10042481-10042500 Msa0055150:intron 40.0%
CCTCTTCACCTGAAAATTGT+GGG + chr1_2:10042780-10042799 None:intergenic 40.0%
!!! CCACAATTTTCAGGTGAAGA+GGG - chr1_2:10042778-10042797 Msa0055150:intron 40.0%
AACCCTTCCATAAGTGCATT+GGG - chr1_2:10042847-10042866 Msa0055150:intron 40.0%
TACCCAATGCACTTATGGAA+GGG + chr1_2:10042852-10042871 None:intergenic 40.0%
GATACTACCCAATGCACTTA+TGG + chr1_2:10042857-10042876 None:intergenic 40.0%
AACACCCCAAAACATGACTT+GGG + chr1_2:10043310-10043329 None:intergenic 40.0%
AAACACCCCAAAACATGACT+TGG + chr1_2:10043311-10043330 None:intergenic 40.0%
!!! AAGTCATGTTTTGGGGTGTT+TGG - chr1_2:10043310-10043329 Msa0055150:CDS 40.0%
ATCTTTCTTCCATCTTGGCA+TGG + chr1_2:10043411-10043430 None:intergenic 40.0%
GCTCTATCTTTCTTCCATCT+TGG + chr1_2:10043416-10043435 None:intergenic 40.0%
GTAGGGATGTATCTCAAACA+GGG + chr1_2:10043446-10043465 None:intergenic 40.0%
TGTAGGGATGTATCTCAAAC+AGG + chr1_2:10043447-10043466 None:intergenic 40.0%
GCAGGGGATATATATGTGTA+GGG + chr1_2:10043463-10043482 None:intergenic 40.0%
ACATATATATCCCCTGCGAA+TGG - chr1_2:10043466-10043485 Msa0055150:five_prime_UTR 40.0%
! GCAGCGAACCAGTTTTTCTT+TGG + chr1_2:10039326-10039345 None:intergenic 45.0%
ACCGTATTTGCGAAGACGTT+TGG + chr1_2:10039369-10039388 None:intergenic 45.0%
! TTTGAATCGGCTTCCAAAGG+AGG - chr1_2:10039529-10039548 Msa0055150:three_prime_UTR 45.0%
GAAGCATGAGTATCTTCCTG+AGG - chr1_2:10039601-10039620 Msa0055150:three_prime_UTR 45.0%
GTATCTTCCTGAGGATCTTC+AGG - chr1_2:10039610-10039629 Msa0055150:three_prime_UTR 45.0%
AAACCAACCTGAAGATCCTC+AGG + chr1_2:10039620-10039639 None:intergenic 45.0%
!! TGAGGATCTTCAGGTTGGTT+TGG - chr1_2:10039619-10039638 Msa0055150:three_prime_UTR 45.0%
AGACATGGACAGGTTTACGA+GGG - chr1_2:10039863-10039882 Msa0055150:intron 45.0%
GAGGATCTAACTCTACCTTG+TGG + chr1_2:10040248-10040267 None:intergenic 45.0%
CAAGGTAGAGTTAGATCCTC+TGG - chr1_2:10040248-10040267 Msa0055150:intron 45.0%
ACAACAGTACACTGCACAAG+TGG + chr1_2:10040513-10040532 None:intergenic 45.0%
AGGCAATGCAAACACCATTC+AGG - chr1_2:10040705-10040724 Msa0055150:intron 45.0%
CAAAGGTCAGCATATCCTGA+AGG + chr1_2:10040736-10040755 None:intergenic 45.0%
ATGTGCCCCACACAAGTAAA+CGG - chr1_2:10041466-10041485 Msa0055150:intron 45.0%
GACATAGCAATCATGGGTCA+TGG - chr1_2:10041573-10041592 Msa0055150:intron 45.0%
ATGGCAGTTGATTGTGAGGA+AGG - chr1_2:10041592-10041611 Msa0055150:intron 45.0%
ATTGTGAGGAAGGATTCCAG+AGG - chr1_2:10041602-10041621 Msa0055150:intron 45.0%
GCGTTATAGTCCATATCAGC+TGG + chr1_2:10041680-10041699 None:intergenic 45.0%
GATACACACATAGATGGCAG+GGG + chr1_2:10041857-10041876 None:intergenic 45.0%
GGATACACACATAGATGGCA+GGG + chr1_2:10041858-10041877 None:intergenic 45.0%
AGGATACACACATAGATGGC+AGG + chr1_2:10041859-10041878 None:intergenic 45.0%
AACTGGGAGTGGTTCTCTAT+GGG + chr1_2:10041920-10041939 None:intergenic 45.0%
TTAAGGTCTTCAACTGGGAG+TGG + chr1_2:10041931-10041950 None:intergenic 45.0%
GAGTGAGTGCTAAAAAGAGG+GGG + chr1_2:10042471-10042490 None:intergenic 45.0%
TGTGGGGCTCATTTGTAGAA+TGG - chr1_2:10042510-10042529 Msa0055150:intron 45.0%
!!! CCCACAATTTTCAGGTGAAG+AGG - chr1_2:10042777-10042796 Msa0055150:intron 45.0%
CCCTCTTCACCTGAAAATTG+TGG + chr1_2:10042781-10042800 None:intergenic 45.0%
TGGAAGGGTTCGTTGATACA+GGG + chr1_2:10042837-10042856 None:intergenic 45.0%
ATGGAAGGGTTCGTTGATAC+AGG + chr1_2:10042838-10042857 None:intergenic 45.0%
GAACCCTTCCATAAGTGCAT+TGG - chr1_2:10042846-10042865 Msa0055150:intron 45.0%
CTACCCAATGCACTTATGGA+AGG + chr1_2:10042853-10042872 None:intergenic 45.0%
GTGCTGTAAACTTCCCTCTT+GGG - chr1_2:10042999-10043018 Msa0055150:intron 45.0%
TTCTATTGGCGTGCGAAATG+TGG - chr1_2:10043236-10043255 Msa0055150:intron 45.0%
!! ATTTGGTGTCCATGCCAAGA+TGG - chr1_2:10043399-10043418 Msa0055150:five_prime_UTR 45.0%
CGCAGGGGATATATATGTGT+AGG + chr1_2:10043464-10043483 None:intergenic 45.0%
!!! CACTGATTTTCCATTCGCAG+GGG + chr1_2:10043479-10043498 None:intergenic 45.0%
!!! GCACTGATTTTCCATTCGCA+GGG + chr1_2:10043480-10043499 None:intergenic 45.0%
!!! TGCACTGATTTTCCATTCGC+AGG + chr1_2:10043481-10043500 None:intergenic 45.0%
!!! AACATTTTTATAAATAAAAA+AGG + chr1_2:10041257-10041276 None:intergenic 5.0%
AGCGAGCGAGCGAGTATAAT+TGG - chr1_2:10039152-10039171 Msa0055150:three_prime_UTR 50.0%
!! GGCTTTGAATCGGCTTCCAA+AGG - chr1_2:10039526-10039545 Msa0055150:three_prime_UTR 50.0%
CGAGCATCAACAACCTCCTT+TGG + chr1_2:10039545-10039564 None:intergenic 50.0%
CTTCCTGAGGATCTTCAGGT+TGG - chr1_2:10039614-10039633 Msa0055150:three_prime_UTR 50.0%
CAGACATGGACAGGTTTACG+AGG - chr1_2:10039862-10039881 Msa0055150:intron 50.0%
ACCATTCAGGAGCTACCTTC+AGG - chr1_2:10040718-10040737 Msa0055150:intron 50.0%
TCCTGAAGGTAGCTCCTGAA+TGG + chr1_2:10040722-10040741 None:intergenic 50.0%
TTGGGCCCTGCACATATAGA+TGG - chr1_2:10041408-10041427 Msa0055150:intron 50.0%
TGGGCCCTGCACATATAGAT+GGG - chr1_2:10041409-10041428 Msa0055150:intron 50.0%
ACTTGTGTGGGGCACATATG+TGG + chr1_2:10041463-10041482 None:intergenic 50.0%
GCTATGTCTTTAGCAGGGCT+TGG + chr1_2:10041561-10041580 None:intergenic 50.0%
GGTCATGGCAGTTGATTGTG+AGG - chr1_2:10041588-10041607 Msa0055150:intron 50.0%
CTCAAGGGTTGTTCAACCTC+TGG + chr1_2:10041621-10041640 None:intergenic 50.0%
! AACCCTTGAGCTGAGTACTG+TGG - chr1_2:10041631-10041650 Msa0055150:intron 50.0%
CTCCACAGTACTCAGCTCAA+GGG + chr1_2:10041636-10041655 None:intergenic 50.0%
TCTCCACAGTACTCAGCTCA+AGG + chr1_2:10041637-10041656 None:intergenic 50.0%
TACTGTGGAGACCCGATGTT+GGG - chr1_2:10041646-10041665 Msa0055150:intron 50.0%
TGGTATCATGCCCCAACATC+GGG + chr1_2:10041660-10041679 None:intergenic 50.0%
CTGGTATCATGCCCCAACAT+CGG + chr1_2:10041661-10041680 None:intergenic 50.0%
GGGCATGATACCAGCTGATA+TGG - chr1_2:10041667-10041686 Msa0055150:intron 50.0%
CAACTGGGAGTGGTTCTCTA+TGG + chr1_2:10041921-10041940 None:intergenic 50.0%
TTGTGAAGGGATTCCCGTCA+TGG - chr1_2:10042059-10042078 Msa0055150:intron 50.0%
TGCCGTATAACCAATGGCAC+GGG + chr1_2:10042085-10042104 None:intergenic 50.0%
CTGCCGTATAACCAATGGCA+CGG + chr1_2:10042086-10042105 None:intergenic 50.0%
ACTGGACACTGACAGCATCA+TGG - chr1_2:10042132-10042151 Msa0055150:intron 50.0%
GGAAGGGTTCGTTGATACAG+GGG + chr1_2:10042836-10042855 None:intergenic 50.0%
! GGTGCTGTAAACTTCCCTCT+TGG - chr1_2:10042998-10043017 Msa0055150:intron 50.0%
GCATGTGCTCGACACAGACA+TGG - chr1_2:10039848-10039867 Msa0055150:intron 55.0%
TGCTCGACACAGACATGGAC+AGG - chr1_2:10039853-10039872 Msa0055150:intron 55.0%
CACGTGTGTCAGTGTCGTGT+CGG - chr1_2:10039913-10039932 Msa0055150:intron 55.0%
GTACTGTGGAGACCCGATGT+TGG - chr1_2:10041645-10041664 Msa0055150:intron 55.0%
ACTGTGGAGACCCGATGTTG+GGG - chr1_2:10041647-10041666 Msa0055150:intron 55.0%
CACACATAGATGGCAGGGGA+TGG + chr1_2:10041853-10041872 None:intergenic 55.0%
GGTGGTCATGGTAGCCACTA+TGG - chr1_2:10041994-10042013 Msa0055150:intron 55.0%
! GGCCCGTGCCATTGGTTATA+CGG - chr1_2:10042080-10042099 Msa0055150:intron 55.0%
! CGTGCCATTGGTTATACGGC+AGG - chr1_2:10042084-10042103 Msa0055150:intron 55.0%
TCAGTGTCCAGTGCTGTCGT+TGG + chr1_2:10042124-10042143 None:intergenic 55.0%
ACGAGCAGAGCGTGAAGCAT+TGG - chr1_2:10042802-10042821 Msa0055150:intron 55.0%
! CGAGCAGAGCGTGAAGCATT+GGG - chr1_2:10042803-10042822 Msa0055150:intron 55.0%
! GTGTCAGTGTCGTGTCGGTG+TGG - chr1_2:10039918-10039937 Msa0055150:intron 60.0%
! TGTCGTGTCGGTGTGGACAC+CGG - chr1_2:10039925-10039944 Msa0055150:intron 60.0%
ACCAATGGCACGGGCCATGA+CGG + chr1_2:10042076-10042095 None:intergenic 60.0%
CCAGTGCTGTCGTTGGCAGA+AGG + chr1_2:10042117-10042136 None:intergenic 60.0%
CCTTCTGCCAACGACAGCAC+TGG - chr1_2:10042114-10042133 Msa0055150:intron 60.0%
!! GCAGAGCGTGAAGCATTGGG+AGG - chr1_2:10042806-10042825 Msa0055150:intron 60.0%
CCAATGGCACGGGCCATGAC+GGG + chr1_2:10042075-10042094 None:intergenic 65.0%
CCCGTCATGGCCCGTGCCAT+TGG - chr1_2:10042072-10042091 Msa0055150:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 10039130 10043516 10039130 ID=Msa0055150;Name=Msa0055150
chr1_2 mRNA 10039130 10043516 10039130 ID=Msa0055150-mRNA-1;Parent=Msa0055150;Name=Msa0055150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=163|1|1|1|0.66|1|4|657|122
chr1_2 exon 10039130 10039855 10039130 ID=Msa0055150-mRNA-1:exon:3791;Parent=Msa0055150-mRNA-1
chr1_2 exon 10041892 10041939 10041892 ID=Msa0055150-mRNA-1:exon:3790;Parent=Msa0055150-mRNA-1
chr1_2 exon 10043015 10043172 10043015 ID=Msa0055150-mRNA-1:exon:3789;Parent=Msa0055150-mRNA-1
chr1_2 exon 10043260 10043516 10043260 ID=Msa0055150-mRNA-1:exon:3788;Parent=Msa0055150-mRNA-1
chr1_2 five_prime_UTR 10043354 10043516 10043354 ID=Msa0055150-mRNA-1:five_prime_utr;Parent=Msa0055150-mRNA-1
chr1_2 CDS 10043260 10043353 10043260 ID=Msa0055150-mRNA-1:cds;Parent=Msa0055150-mRNA-1
chr1_2 CDS 10043015 10043172 10043015 ID=Msa0055150-mRNA-1:cds;Parent=Msa0055150-mRNA-1
chr1_2 CDS 10041892 10041939 10041892 ID=Msa0055150-mRNA-1:cds;Parent=Msa0055150-mRNA-1
chr1_2 CDS 10039787 10039855 10039787 ID=Msa0055150-mRNA-1:cds;Parent=Msa0055150-mRNA-1
chr1_2 three_prime_UTR 10039130 10039786 10039130 ID=Msa0055150-mRNA-1:three_prime_utr;Parent=Msa0055150-mRNA-1
Gene Sequence

>Msa0055150

ATGGCGTCTTTGCTACAAGCGATTGTAGATCCAAAGAAAAACTGGTTCGCTGCTCAACACATGAAAGCTGTTTCCAAACGTCTTCGCAAATACGGGTTACGATATGATGATCTGTATGATCCGTATTACGATTTGGATATTAAGGAGGCTTTGAATCGGCTTCCAAAGGAGGTTGTTGATGCTCGTCATGCTCGTCTTAAGCGTGCTATTGATCTTTCCATGAAGCATGAGTATCTTCCTGAGGATCTTCAGGCAATGCAAACACCATTCAGGAGCTACCTTCAGGATATGCTGACCTTTGTGAAGAGGGAACGAGCAGAGCGTGAAGCATTGGGAGGTTTGCCCCTGTATCAACGAACCCTTCCATAA

Protein sequence

>Msa0055150

MASLLQAIVDPKKNWFAAQHMKAVSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPKEVVDARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFVKRERAEREALGGLPLYQRTLP*