AlfalfaGEDB | Msa0947760

M. sativa cultivar zhongmu-4 / Msa0947760

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0947760	A0A396HEB1	80.282	71	10	2	1	71	1	67	7.29e-24	96.3

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006070	Msa0947760	0.815974	7.020356e-52	-8.615850e-47
Msa0011170	Msa0947760	0.818149	2.278860e-52	-8.615850e-47
Msa0012040	Msa0947760	0.823622	1.254383e-53	-8.615850e-47
Msa0017320	Msa0947760	0.813027	3.150129e-51	-8.615850e-47
Msa0018070	Msa0947760	0.808705	2.715876e-50	-8.615850e-47
Msa0028660	Msa0947760	0.835901	1.281020e-56	-8.615850e-47
Msa0037840	Msa0947760	0.801672	8.062983e-49	-8.615850e-47
Msa0037880	Msa0947760	0.835923	1.264395e-56	-8.615850e-47
Msa0039330	Msa0947760	0.808502	3.000766e-50	-8.615850e-47
Msa0043980	Msa0947760	0.831373	1.732160e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0947760	MtrunA17_Chr6g0462391	80.282	71	10	2	1	71	1	67	1.40e-27	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 18 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCCTAGAGCCTTGTTTGAG+AGG	0.529926	6_3:+30986661	None:intergenic
ACCTCTCAAACAAGGCTCTA+GGG	0.512728	6_3:-30986662	Msa0947760:CDS
AGAACCTTACCTCTCAAACA+AGG	0.656416	6_3:-30986670	Msa0947760:CDS
AGAGCCTTGTTTGAGAGGTA+AGG	0.487732	6_3:+30986666	None:intergenic
AGCAAGAGAGAAGTAACAGA+AGG	0.609065	6_3:+30987797	None:intergenic
ATATTTGACTATTATCTCTT+TGG	0.278759	6_3:+30988184	None:intergenic
ATCATCAAGCAGTTTCTGTT+GGG	0.399002	6_3:+30987900	None:intergenic
ATTCAGAACCTTTGTACTTT+AGG	0.208125	6_3:-30988091	Msa0947760:five_prime_UTR
CATCATCAAGCAGTTTCTGT+TGG	0.402774	6_3:+30987899	None:intergenic
GAATCTCTCAGATTCTTTGT+TGG	0.383111	6_3:+30988006	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCAGAACCTTTGTACTTT+AGG	-	chr6_3:30986743-30986762	Msa0947760:intron	30.0%
ATCATCATACCTGAAAAAAC+TGG	-	chr6_3:30986857-30986876	Msa0947760:intron	30.0%
AACAATATCGGCATTCTTTA+GGG	+	chr6_3:30987336-30987355	None:intergenic	30.0%
TAACAATATCGGCATTCTTT+AGG	+	chr6_3:30987337-30987356	None:intergenic	30.0%
TCAATTCACACTCAAAATTG+TGG	+	chr6_3:30987507-30987526	None:intergenic	30.0%
GTTAATCACGTTCAAAAAGA+TGG	+	chr6_3:30987558-30987577	None:intergenic	30.0%
TCGCAAATGTAAGGAAAAAT+GGG	-	chr6_3:30987584-30987603	Msa0947760:intron	30.0%
AATAGTGTTTATTAGGGAAG+TGG	-	chr6_3:30987693-30987712	Msa0947760:intron	30.0%
AACTGGTATTTATAGAAGAG+AGG	-	chr6_3:30987796-30987815	Msa0947760:CDS	30.0%
CTGAATTGACCATTTATTGT+GGG	-	chr6_3:30987844-30987863	Msa0947760:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	30986653	30988203	30986653	ID=Msa0947760;Name=Msa0947760
chr6_3	mRNA	30986653	30988203	30986653	ID=Msa0947760-mRNA-1;Parent=Msa0947760;Name=Msa0947760-mRNA-1;_AED=0.27;_eAED=0.27;_QI=163\|0\|0.5\|0.5\|0\|0\|2\|0\|101
chr6_3	exon	30986653	30986690	30986653	ID=Msa0947760-mRNA-1:exon:8191;Parent=Msa0947760-mRNA-1
chr6_3	exon	30987773	30988203	30987773	ID=Msa0947760-mRNA-1:exon:8190;Parent=Msa0947760-mRNA-1
chr6_3	five_prime_UTR	30988041	30988203	30988041	ID=Msa0947760-mRNA-1:five_prime_utr;Parent=Msa0947760-mRNA-1
chr6_3	CDS	30987773	30988040	30987773	ID=Msa0947760-mRNA-1:cds;Parent=Msa0947760-mRNA-1
chr6_3	CDS	30986653	30986690	30986653	ID=Msa0947760-mRNA-1:cds;Parent=Msa0947760-mRNA-1

Gene Sequence	>Msa0947760 ATGCATCTATGGCCAACAAAGAATCTGAGAGATTCATTCAAATCATCATACCTGAAAAAACTGGAATGGAATACTCAAAGAATGAAAAACAACCAACAACAAACTCAATCATTAACAACCCAACAGAAACTGCTTGATGATGAAGACAACAACAACAACAACAATAACAACGTTGTTGACACCACTTCTCAAAATGGAACTGTAACTTCCATATGTCATGACCTTCTGTTACTTCTCTCTTGCTGTTACTGTTGTTTCTGCTGTGGCGAACCTTACCTCTCAAACAAGGCTCTAGGGTCTGTTTGA
Protein sequence	>Msa0947760 MHLWPTKNLRDSFKSSYLKKLEWNTQRMKNNQQQTQSLTTQQKLLDDEDNNNNNNNNVVDTTSQNGTVTSICHDLLLLLSCCYCCFCCGEPYLSNKALGSV*