AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1046060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046060 MtrunA17_Chr7g0214171 100.000 106 0 0 1 106 1 106 5.29e-77 222
Msa1046060 MtrunA17_Chr5g0427821 86.792 106 14 0 1 106 7 112 8.65e-68 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046060 AT4G24440.2 90.566 106 10 0 1 106 1 106 6.66e-71 207
Msa1046060 AT4G24440.1 90.566 106 10 0 1 106 1 106 6.66e-71 207

Find 41 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCCTGAGATTGCGATTC+AGG 0.222867 7_2:+6397527 Msa1046060:CDS
TTAATCTTGGCGATCGATTT+AGG 0.231845 7_2:+6397038 Msa1046060:five_prime_UTR
TTTCTCTGGGCAAACATCTA+TGG 0.280270 7_2:+6400777 Msa1046060:three_prime_UTR
TATGTTATTATAGATTTAAA+AGG 0.331823 7_2:+6400587 Msa1046060:three_prime_UTR
CTCTCTCGATTAGTTAATCT+TGG 0.355497 7_2:+6397025 Msa1046060:five_prime_UTR
ATGTGGCCTTCAGTTCTTGC+AGG 0.384806 7_2:+6400549 Msa1046060:three_prime_UTR
TAGTCATCGTTATAAATGTA+TGG 0.419101 7_2:+6400809 Msa1046060:three_prime_UTR
TCGTTATAAATGTATGGTTA+TGG 0.429200 7_2:+6400815 Msa1046060:three_prime_UTR
AATGTGCCTCACTGAGACTT+TGG 0.433161 7_2:+6397479 Msa1046060:CDS
TGAGAATATCACTTGGGAAC+TGG 0.438530 7_2:+6400651 Msa1046060:three_prime_UTR
AATAATAACATGAAGATTGA+AGG 0.444739 7_2:-6400610 None:intergenic
GTAGTCTATGACTGAAGCTC+TGG 0.460011 7_2:+6397666 Msa1046060:intron
GGTTCTCGTTCAGTTTGATA+AGG 0.472558 7_2:+6397548 Msa1046060:CDS
GAAGGCCACATCCGTCACTA+TGG 0.482621 7_2:-6400537 None:intergenic
CAAAGCATCTTGTAAGATGA+AGG 0.489651 7_2:-6400366 None:intergenic
CTTATCATCTGCTGGTACCA+TGG 0.489942 7_2:+6400501 Msa1046060:three_prime_UTR
TAACCCGTCCAACATTCTCT+TGG 0.494051 7_2:-6400406 None:intergenic
CACTGAGACTTTGGACGAGA+TGG 0.495885 7_2:+6397488 Msa1046060:CDS
AGAACCTGAATCGCAATCTC+AGG 0.497392 7_2:-6397531 None:intergenic
ATTTGTTTACATAGAGCTCA+TGG 0.502581 7_2:-6400749 None:intergenic
TAAAAGCAAGGTCTCTATCA+AGG 0.505886 7_2:+6397699 Msa1046060:CDS
ACAAGGAGCTTATCATCTGC+TGG 0.531966 7_2:+6400493 Msa1046060:three_prime_UTR
TGTTGGACGGGTTAAAATAG+TGG 0.534469 7_2:+6400415 Msa1046060:CDS
CTGGTTCCTGCAAGAACTGA+AGG 0.534775 7_2:-6400555 None:intergenic
CATCTGCTGGTACCATGGAT+TGG 0.547292 7_2:+6400506 Msa1046060:three_prime_UTR
CTGCTGGTACCATGGATTGG+TGG 0.547361 7_2:+6400509 Msa1046060:three_prime_UTR
CTTTATCGTAGGTCGACAAT+CGG 0.550857 7_2:+6397456 Msa1046060:CDS
GAAGACAACCAAGAGAATGT+TGG 0.561206 7_2:+6400398 Msa1046060:CDS
TAATAACATAGTGTAGATGC+TGG 0.566171 7_2:-6400574 None:intergenic
TTGGACGAGATGGTTCAGAA+TGG 0.589806 7_2:+6397498 Msa1046060:CDS
CAACCAAGAGAATGTTGGAC+GGG 0.592439 7_2:+6400403 Msa1046060:CDS
TTAGACCATAGTGACGGATG+TGG 0.610434 7_2:+6400532 Msa1046060:three_prime_UTR
ATGGTCTAACCACCAATCCA+TGG 0.610777 7_2:-6400518 None:intergenic
GGAAACACAAGTTAAAAGCA+AGG 0.611187 7_2:+6397687 Msa1046060:CDS
TTTCTATCGTATTGTCAACA+AGG 0.636647 7_2:+6400476 Msa1046060:three_prime_UTR
GTTACATTGAGAATATCACT+TGG 0.644377 7_2:+6400644 Msa1046060:three_prime_UTR
ACAACCAAGAGAATGTTGGA+CGG 0.645466 7_2:+6400402 Msa1046060:CDS
CGACGTTCGAACTTTATCGT+AGG 0.648273 7_2:+6397445 Msa1046060:CDS
TTACATTGAGAATATCACTT+GGG 0.661466 7_2:+6400645 Msa1046060:three_prime_UTR
TGGTGGTTAGACCATAGTGA+CGG 0.696323 7_2:+6400526 Msa1046060:three_prime_UTR
TCTCGTCCAAAGTCTCAGTG+AGG 0.751939 7_2:-6397485 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATTGAATAAATTCTT+TGG + chr7_2:6398860-6398879 Msa1046060:intron 10.0%
!! ATTTATTGAATAAATTCTTT+GGG + chr7_2:6398861-6398880 Msa1046060:intron 10.0%
!! TATGTTATTATAGATTTAAA+AGG + chr7_2:6400587-6400606 Msa1046060:three_prime_UTR 10.0%
!!! TACAGTTTTTTTTTTTTTTT+TGG - chr7_2:6400714-6400733 None:intergenic 10.0%
!! TTTGATGTGTAATTAAAATT+TGG - chr7_2:6398384-6398403 None:intergenic 15.0%
!! TTTATTGAATAAATTCTTTG+GGG + chr7_2:6398862-6398881 Msa1046060:intron 15.0%
!!! TACCTTTTTACTTAATTTTT+TGG + chr7_2:6399471-6399490 Msa1046060:intron 15.0%
!!! TAAACAAATTTATTTTTCTC+TGG + chr7_2:6400763-6400782 Msa1046060:three_prime_UTR 15.0%
!!! AAACAAATTTATTTTTCTCT+GGG + chr7_2:6400764-6400783 Msa1046060:three_prime_UTR 15.0%
!! TTCAATTAACAAAAAGAGTA+GGG - chr7_2:6397117-6397136 None:intergenic 20.0%
!! ATTCAATTAACAAAAAGAGT+AGG - chr7_2:6397118-6397137 None:intergenic 20.0%
!!! CTTATTATTTTAATTGCATG+TGG + chr7_2:6397638-6397657 Msa1046060:intron 20.0%
!!! TTTTTACCTTTCAATTCAAT+GGG + chr7_2:6398246-6398265 Msa1046060:intron 20.0%
!!! TAAAATTTGGTTTAAGACAT+TGG - chr7_2:6398371-6398390 None:intergenic 20.0%
!! TTACATTTAGAAATTCCTTA+TGG + chr7_2:6399232-6399251 Msa1046060:intron 20.0%
!! TATTTGCATTATCTTCTATT+TGG + chr7_2:6399294-6399313 Msa1046060:intron 20.0%
!!! ATCATTCAAGGTTTAATTTT+TGG + chr7_2:6399328-6399347 Msa1046060:intron 20.0%
!! TTAAGTAAAAAGGTAATTGT+GGG - chr7_2:6399466-6399485 None:intergenic 20.0%
!! ATTAAGTAAAAAGGTAATTG+TGG - chr7_2:6399467-6399486 None:intergenic 20.0%
!! AGCCAAAAAATTAAGTAAAA+AGG - chr7_2:6399476-6399495 None:intergenic 20.0%
!! ATAATCATGAGTAAAAAGTA+TGG - chr7_2:6399565-6399584 None:intergenic 20.0%
!! TTAAAATTCTTCTACGTAAT+AGG + chr7_2:6399832-6399851 Msa1046060:intron 20.0%
!! TAAAATTCTTCTACGTAATA+GGG + chr7_2:6399833-6399852 Msa1046060:intron 20.0%
!! TAGTACAAAATGTTGTTAAA+TGG - chr7_2:6399879-6399898 None:intergenic 20.0%
!!! AAAAGATGTTTTAAGATGTT+GGG - chr7_2:6400167-6400186 None:intergenic 20.0%
!!! AAAAAGATGTTTTAAGATGT+TGG - chr7_2:6400168-6400187 None:intergenic 20.0%
!! AATAATAACATGAAGATTGA+AGG - chr7_2:6400613-6400632 None:intergenic 20.0%
!!! TCACATTTTTCAAGCTAAAA+TGG + chr7_2:6397422-6397441 Msa1046060:exon 25.0%
!! ATCTTTTGTTAGATAGTGTA+AGG + chr7_2:6397733-6397752 Msa1046060:intron 25.0%
!! TTCATCTCATTAGTTTGAAT+TGG - chr7_2:6397969-6397988 None:intergenic 25.0%
!! CTTTTTACCTTTCAATTCAA+TGG + chr7_2:6398245-6398264 Msa1046060:intron 25.0%
!! TCTCATAGTTTGGAATAAAT+CGG - chr7_2:6398280-6398299 None:intergenic 25.0%
!! CACATCAAATAACAATTTTC+CGG + chr7_2:6398395-6398414 Msa1046060:intron 25.0%
!! ACATCAAATAACAATTTTCC+GGG + chr7_2:6398396-6398415 Msa1046060:intron 25.0%
!!! TTTTCAAGAGATTCTTAAAC+CGG - chr7_2:6398500-6398519 None:intergenic 25.0%
! ATGACATGTTTCAGTATAAA+GGG - chr7_2:6398549-6398568 None:intergenic 25.0%
! TGTTGAAAAACCAAATTTGA+TGG + chr7_2:6398775-6398794 Msa1046060:intron 25.0%
! CTATAATTCACCATCAAATT+TGG - chr7_2:6398788-6398807 None:intergenic 25.0%
! TAGAATTGTCTGATAAAAAC+TGG + chr7_2:6398805-6398824 Msa1046060:intron 25.0%
! ATTCAGTTACAAATCCTATT+TGG - chr7_2:6398833-6398852 None:intergenic 25.0%
! GTTTGTACTAGGAATAAATA+TGG - chr7_2:6399057-6399076 None:intergenic 25.0%
!! AGAAAAATTGAAACTGACTT+TGG - chr7_2:6399163-6399182 None:intergenic 25.0%
! TCATAAAGAAATACTATGCA+AGG - chr7_2:6399187-6399206 None:intergenic 25.0%
! GAGATTTAAAGAGATTGAAT+TGG + chr7_2:6399429-6399448 Msa1046060:intron 25.0%
! TTAAAGAGATTGAATTGGTA+TGG + chr7_2:6399434-6399453 Msa1046060:intron 25.0%
! ATAACAGTCATATATGTCAA+TGG - chr7_2:6399593-6399612 None:intergenic 25.0%
! GAAACTAAGTAAACTATTGT+TGG + chr7_2:6399680-6399699 Msa1046060:intron 25.0%
! TACAAAATGTTGTTAAATGG+AGG - chr7_2:6399876-6399895 None:intergenic 25.0%
!! ATAGAAGATTAATTTGACTG+TGG + chr7_2:6400090-6400109 Msa1046060:intron 25.0%
!! TAGAAGATTAATTTGACTGT+GGG + chr7_2:6400091-6400110 Msa1046060:intron 25.0%
! TTACATTGAGAATATCACTT+GGG + chr7_2:6400645-6400664 Msa1046060:three_prime_UTR 25.0%
! TAGTCATCGTTATAAATGTA+TGG + chr7_2:6400809-6400828 Msa1046060:three_prime_UTR 25.0%
! TCGTTATAAATGTATGGTTA+TGG + chr7_2:6400815-6400834 Msa1046060:three_prime_UTR 25.0%
! TCATTTTCATAGCTTCTTAC+CGG + chr7_2:6397220-6397239 Msa1046060:intron 30.0%
AATGAATACTGTAGTAGTAG+TGG + chr7_2:6397251-6397270 Msa1046060:intron 30.0%
CATTTCATGAGAAAACAAAG+AGG - chr7_2:6397318-6397337 None:intergenic 30.0%
!!! AGTGTAAGGTGTTGATTTTT+TGG + chr7_2:6397747-6397766 Msa1046060:intron 30.0%
TATTGTTAAGATTGTCTAGC+AGG + chr7_2:6397786-6397805 Msa1046060:intron 30.0%
ATTGTTAAGATTGTCTAGCA+GGG + chr7_2:6397787-6397806 Msa1046060:intron 30.0%
CATTGAGCAACAAATATACA+AGG - chr7_2:6397859-6397878 None:intergenic 30.0%
!! TACTGAGCCTTGTATATTTT+TGG + chr7_2:6397881-6397900 Msa1046060:intron 30.0%
GATTGAGCCAAAAATATACA+AGG - chr7_2:6397891-6397910 None:intergenic 30.0%
TAATGAGATGAAGTTTACCT+AGG + chr7_2:6397977-6397996 Msa1046060:intron 30.0%
AATGAGATGAAGTTTACCTA+GGG + chr7_2:6397978-6397997 Msa1046060:intron 30.0%
!! GTATCAGTTTTTCAATCCAA+TGG + chr7_2:6398208-6398227 Msa1046060:intron 30.0%
TTTATTCCAAACTATGAGAG+AGG + chr7_2:6398281-6398300 Msa1046060:intron 30.0%
TAAAATCAAAGTCGAGGATA+TGG - chr7_2:6398341-6398360 None:intergenic 30.0%
TGGAAGAACATGAAAAAATG+AGG - chr7_2:6398429-6398448 None:intergenic 30.0%
GAAAGTTTGTGAATGAGTTT+CGG - chr7_2:6398460-6398479 None:intergenic 30.0%
GGTTTAAGAATCTCTTGAAA+AGG + chr7_2:6398499-6398518 Msa1046060:intron 30.0%
GATGACATGTTTCAGTATAA+AGG - chr7_2:6398550-6398569 None:intergenic 30.0%
! AAATCTCTAAAGGCTGAAAT+AGG - chr7_2:6398572-6398591 None:intergenic 30.0%
CCAACTTTACAAATCTCTAA+AGG - chr7_2:6398582-6398601 None:intergenic 30.0%
! CCTTTAGAGATTTGTAAAGT+TGG + chr7_2:6398579-6398598 Msa1046060:intron 30.0%
! ACACAAAGGTATATTGTAGA+GGG - chr7_2:6398608-6398627 None:intergenic 30.0%
ATACAACTGTTAACACACAA+AGG - chr7_2:6398622-6398641 None:intergenic 30.0%
! GTGTTCTTTATTTATCAGCA+TGG - chr7_2:6398660-6398679 None:intergenic 30.0%
GATAAAAACTGGTACCAAAT+AGG + chr7_2:6398816-6398835 Msa1046060:intron 30.0%
ACACAGAACTAAAATTACAC+AGG + chr7_2:6398921-6398940 Msa1046060:intron 30.0%
GTTATTGTAGAATTATTGCG+TGG - chr7_2:6399016-6399035 None:intergenic 30.0%
! GCATATTTTCTGTTTGTACT+AGG - chr7_2:6399068-6399087 None:intergenic 30.0%
TGTGCAGTTAGTATCTATTA+TGG - chr7_2:6399121-6399140 None:intergenic 30.0%
GCATAGTATTTCTTTATGAG+AGG + chr7_2:6399188-6399207 Msa1046060:intron 30.0%
CATTTAGAAATTCCTTATGG+CGG + chr7_2:6399235-6399254 Msa1046060:intron 30.0%
ATTTAGAAATTCCTTATGGC+GGG + chr7_2:6399236-6399255 Msa1046060:intron 30.0%
!!! ATTTTTTGGCTCTAAACATG+AGG + chr7_2:6399485-6399504 Msa1046060:intron 30.0%
GGAAGTCATGACAAAAAAAA+TGG - chr7_2:6399544-6399563 None:intergenic 30.0%
!!! GTTTTTTCCATCTCTTTTTG+CGG + chr7_2:6399648-6399667 Msa1046060:intron 30.0%
!!! TTTTTTCCATCTCTTTTTGC+GGG + chr7_2:6399649-6399668 Msa1046060:intron 30.0%
TAAACTATTGTTGGATAGCA+AGG + chr7_2:6399689-6399708 Msa1046060:intron 30.0%
TTGTTAAATGGAGGATATAG+TGG - chr7_2:6399867-6399886 None:intergenic 30.0%
TTGTACTAAATAACGTATCG+TGG + chr7_2:6399891-6399910 Msa1046060:intron 30.0%
ACTATACCACTATAATGTAG+CGG - chr7_2:6399940-6399959 None:intergenic 30.0%
TTGTTAAATAGCAGCTATAG+TGG - chr7_2:6399964-6399983 None:intergenic 30.0%
! ACAGATTTTGTGACAATGTT+TGG + chr7_2:6400342-6400361 Msa1046060:CDS 30.0%
TTTCTATCGTATTGTCAACA+AGG + chr7_2:6400476-6400495 Msa1046060:three_prime_UTR 30.0%
TAATAACATAGTGTAGATGC+TGG - chr7_2:6400577-6400596 None:intergenic 30.0%
GTTACATTGAGAATATCACT+TGG + chr7_2:6400644-6400663 Msa1046060:three_prime_UTR 30.0%
ATTTGTTTACATAGAGCTCA+TGG - chr7_2:6400752-6400771 None:intergenic 30.0%
! CTCTCTCGATTAGTTAATCT+TGG + chr7_2:6397025-6397044 Msa1046060:five_prime_UTR 35.0%
! TTAATCTTGGCGATCGATTT+AGG + chr7_2:6397038-6397057 Msa1046060:five_prime_UTR 35.0%
AAAATAATCGCGAAGAAGGA+AGG - chr7_2:6397077-6397096 None:intergenic 35.0%
CCAAAAAATAATCGCGAAGA+AGG - chr7_2:6397081-6397100 None:intergenic 35.0%
!!! CCTTCTTCGCGATTATTTTT+TGG + chr7_2:6397078-6397097 Msa1046060:intron 35.0%
! TGATTCTGCTACTTGAAACT+GGG + chr7_2:6397179-6397198 Msa1046060:intron 35.0%
CAGTATTCATTATATTCCGC+CGG - chr7_2:6397242-6397261 None:intergenic 35.0%
CAGTTTGATAAGGTAGGTTT+CGG + chr7_2:6397558-6397577 Msa1046060:intron 35.0%
GGAAACACAAGTTAAAAGCA+AGG + chr7_2:6397687-6397706 Msa1046060:CDS 35.0%
TAAAAGCAAGGTCTCTATCA+AGG + chr7_2:6397699-6397718 Msa1046060:CDS 35.0%
!!! AAGGTGTTGATTTTTTGGTG+AGG + chr7_2:6397752-6397771 Msa1046060:intron 35.0%
! TCTCATTAGTTTGAATTGGC+TGG - chr7_2:6397965-6397984 None:intergenic 35.0%
GTCGCATTTCAGTTTAAGTA+TGG + chr7_2:6398000-6398019 Msa1046060:intron 35.0%
TTACCTTTCAATTCAATGGG+TGG + chr7_2:6398249-6398268 Msa1046060:intron 35.0%
!! TCCTCGACTTTGATTTTACT+TGG + chr7_2:6398343-6398362 Msa1046060:intron 35.0%
TCCAAGTAAAATCAAAGTCG+AGG - chr7_2:6398347-6398366 None:intergenic 35.0%
AAAAAATGAGGAAGAGAACC+CGG - chr7_2:6398417-6398436 None:intergenic 35.0%
AAGAATCTCTTGAAAAGGTG+TGG + chr7_2:6398504-6398523 Msa1046060:intron 35.0%
! CACACAAAGGTATATTGTAG+AGG - chr7_2:6398609-6398628 None:intergenic 35.0%
TGTGTGTTAACAGTTGTATC+TGG + chr7_2:6398623-6398642 Msa1046060:intron 35.0%
ACAATTCAAGTCCACAAATC+AGG + chr7_2:6398678-6398697 Msa1046060:intron 35.0%
TCCACAAATCAGGATCAAAT+AGG + chr7_2:6398688-6398707 Msa1046060:intron 35.0%
CCACAAATCAGGATCAAATA+GGG + chr7_2:6398689-6398708 Msa1046060:intron 35.0%
AGAATTATTGCGTGGTTAAC+TGG - chr7_2:6399008-6399027 None:intergenic 35.0%
TAAAGATGCCTAACTTGAGA+GGG - chr7_2:6399265-6399284 None:intergenic 35.0%
TTAAAGATGCCTAACTTGAG+AGG - chr7_2:6399266-6399285 None:intergenic 35.0%
TAAACATGAGGTTCATTTGC+CGG + chr7_2:6399497-6399516 Msa1046060:intron 35.0%
ATGAGATCGTATAGTGCAAA+AGG - chr7_2:6399628-6399647 None:intergenic 35.0%
! ACTTTTACATGAACAAGCCA+TGG - chr7_2:6399749-6399768 None:intergenic 35.0%
AACGTATCGTGGAACAATAA+CGG + chr7_2:6399902-6399921 Msa1046060:intron 35.0%
CAAATTCCGCTACATTATAG+TGG + chr7_2:6399931-6399950 Msa1046060:intron 35.0%
GAACACTCAGAGTAAAGAAA+AGG - chr7_2:6400280-6400299 None:intergenic 35.0%
! TCTTTTCACTTTCCAATCAC+AGG + chr7_2:6400304-6400323 Msa1046060:intron 35.0%
! CTTTTCACTTTCCAATCACA+GGG + chr7_2:6400305-6400324 Msa1046060:intron 35.0%
! CAAAGCATCTTGTAAGATGA+AGG - chr7_2:6400369-6400388 None:intergenic 35.0%
! GTGATTCTGCTACTTGAAAC+TGG + chr7_2:6397178-6397197 Msa1046060:intron 40.0%
! TTTTCATAGCTTCTTACCGG+CGG + chr7_2:6397223-6397242 Msa1046060:intron 40.0%
TTAACAAGACTGACTGCACT+AGG - chr7_2:6397357-6397376 None:intergenic 40.0%
CTTTATCGTAGGTCGACAAT+CGG + chr7_2:6397456-6397475 Msa1046060:CDS 40.0%
GGTTCTCGTTCAGTTTGATA+AGG + chr7_2:6397548-6397567 Msa1046060:CDS 40.0%
CTCGTTCAGTTTGATAAGGT+AGG + chr7_2:6397552-6397571 Msa1046060:intron 40.0%
GATAAGGTAGGTTTCGGAAT+TGG + chr7_2:6397564-6397583 Msa1046060:intron 40.0%
GAGACTACATGTTTCGTTTC+TGG + chr7_2:6397593-6397612 Msa1046060:intron 40.0%
! ACATGTTTCGTTTCTGGATC+TGG + chr7_2:6397599-6397618 Msa1046060:intron 40.0%
!!! TTTTTTGGTGAGGTGAAGCA+TGG + chr7_2:6397762-6397781 Msa1046060:intron 40.0%
TTAAGATTGTCTAGCAGGGA+TGG + chr7_2:6397791-6397810 Msa1046060:intron 40.0%
TTAAACTGAAATGCGACCCT+AGG - chr7_2:6397997-6398016 None:intergenic 40.0%
CAACCACCCATTGAATTGAA+AGG - chr7_2:6398255-6398274 None:intergenic 40.0%
ACATCTCCTCTCTCATAGTT+TGG - chr7_2:6398290-6398309 None:intergenic 40.0%
AGTTTGTGAATGAGTTTCGG+AGG - chr7_2:6398457-6398476 None:intergenic 40.0%
! CCCTATTTGATCCTGATTTG+TGG - chr7_2:6398692-6398711 None:intergenic 40.0%
TTGTGAACTGTCTCTGACTT+GGG - chr7_2:6398895-6398914 None:intergenic 40.0%
ATTGTGAACTGTCTCTGACT+TGG - chr7_2:6398896-6398915 None:intergenic 40.0%
! GGATTAGTGAAACACAGTCA+CGG + chr7_2:6398942-6398961 Msa1046060:intron 40.0%
ATTGCGTGGTTAACTGGAAT+AGG - chr7_2:6399002-6399021 None:intergenic 40.0%
GAGAAGAAACGCATCATTCA+AGG + chr7_2:6399316-6399335 Msa1046060:intron 40.0%
AAACATGAGGTTCATTTGCC+GGG + chr7_2:6399498-6399517 Msa1046060:intron 40.0%
ATATGACCAAACTGCATACC+CGG - chr7_2:6399519-6399538 None:intergenic 40.0%
! TCTCATGATGATGACAACCA+TGG + chr7_2:6399729-6399748 Msa1046060:intron 40.0%
GAAGACAACCAAGAGAATGT+TGG + chr7_2:6400398-6400417 Msa1046060:CDS 40.0%
ACAACCAAGAGAATGTTGGA+CGG + chr7_2:6400402-6400421 Msa1046060:CDS 40.0%
!! TGTTGGACGGGTTAAAATAG+TGG + chr7_2:6400415-6400434 Msa1046060:CDS 40.0%
TGAGAATATCACTTGGGAAC+TGG + chr7_2:6400651-6400670 Msa1046060:three_prime_UTR 40.0%
TTTCTCTGGGCAAACATCTA+TGG + chr7_2:6400777-6400796 Msa1046060:three_prime_UTR 40.0%
CGACGTTCGAACTTTATCGT+AGG + chr7_2:6397445-6397464 Msa1046060:CDS 45.0%
AATGTGCCTCACTGAGACTT+TGG + chr7_2:6397479-6397498 Msa1046060:CDS 45.0%
TTGGACGAGATGGTTCAGAA+TGG + chr7_2:6397498-6397517 Msa1046060:CDS 45.0%
TAGTCCTGAGATTGCGATTC+AGG + chr7_2:6397527-6397546 Msa1046060:CDS 45.0%
AGAACCTGAATCGCAATCTC+AGG - chr7_2:6397534-6397553 None:intergenic 45.0%
! TAGGTTTCGGAATTGGTGCT+AGG + chr7_2:6397571-6397590 Msa1046060:intron 45.0%
GTAGTCTATGACTGAAGCTC+TGG + chr7_2:6397666-6397685 Msa1046060:intron 45.0%
AATCAGAGAGACGAAGGGTT+TGG + chr7_2:6397907-6397926 Msa1046060:intron 45.0%
!! CAGACGTAACTTGTTACGAG+TGG + chr7_2:6398087-6398106 Msa1046060:intron 45.0%
AGCAAAAGTGACACAGCCAT+TGG - chr7_2:6398227-6398246 None:intergenic 45.0%
AATGAGTTTCGGAGGATGGA+TGG - chr7_2:6398449-6398468 None:intergenic 45.0%
TGTGAATGAGTTTCGGAGGA+TGG - chr7_2:6398453-6398472 None:intergenic 45.0%
TCTGATCACGCTCATTGTTC+CGG + chr7_2:6398478-6398497 Msa1046060:intron 45.0%
! CTCTTGAAAAGGTGTGGCAT+TGG + chr7_2:6398510-6398529 Msa1046060:intron 45.0%
!! AGAAAGCTCTAGAACCCTTG+TGG - chr7_2:6398971-6398990 None:intergenic 45.0%
AGCACGCCAACAACATGAAA+CGG - chr7_2:6400120-6400139 None:intergenic 45.0%
TATGCAGATGTCCCTGTGAT+TGG - chr7_2:6400319-6400338 None:intergenic 45.0%
CAACCAAGAGAATGTTGGAC+GGG + chr7_2:6400403-6400422 Msa1046060:CDS 45.0%
TAACCCGTCCAACATTCTCT+TGG - chr7_2:6400409-6400428 None:intergenic 45.0%
ACAAGGAGCTTATCATCTGC+TGG + chr7_2:6400493-6400512 Msa1046060:three_prime_UTR 45.0%
CTTATCATCTGCTGGTACCA+TGG + chr7_2:6400501-6400520 Msa1046060:three_prime_UTR 45.0%
ATGGTCTAACCACCAATCCA+TGG - chr7_2:6400521-6400540 None:intergenic 45.0%
TGGTGGTTAGACCATAGTGA+CGG + chr7_2:6400526-6400545 Msa1046060:three_prime_UTR 45.0%
!! TTAGACCATAGTGACGGATG+TGG + chr7_2:6400532-6400551 Msa1046060:three_prime_UTR 45.0%
TCTCGTCCAAAGTCTCAGTG+AGG - chr7_2:6397488-6397507 None:intergenic 50.0%
CACTGAGACTTTGGACGAGA+TGG + chr7_2:6397488-6397507 Msa1046060:CDS 50.0%
TGGCTCAATCAGAGAGACGA+AGG + chr7_2:6397901-6397920 Msa1046060:intron 50.0%
GGCTCAATCAGAGAGACGAA+GGG + chr7_2:6397902-6397921 Msa1046060:intron 50.0%
AGAGATACGCACACTGTGTG+TGG + chr7_2:6398046-6398065 Msa1046060:intron 50.0%
! CTGTGTGTGGACACTTGTTG+AGG + chr7_2:6398059-6398078 Msa1046060:intron 50.0%
ACACAGTCACGGTTTCCACA+AGG + chr7_2:6398953-6398972 Msa1046060:intron 50.0%
CACAGTCACGGTTTCCACAA+GGG + chr7_2:6398954-6398973 Msa1046060:intron 50.0%
CATTTGCCGGGTATGCAGTT+TGG + chr7_2:6399510-6399529 Msa1046060:intron 50.0%
! TCCATCTCTTTTTGCGGGAG+TGG + chr7_2:6399654-6399673 Msa1046060:intron 50.0%
! CCATCTCTTTTTGCGGGAGT+GGG + chr7_2:6399655-6399674 Msa1046060:intron 50.0%
CATCTGCTGGTACCATGGAT+TGG + chr7_2:6400506-6400525 Msa1046060:three_prime_UTR 50.0%
ATGTGGCCTTCAGTTCTTGC+AGG + chr7_2:6400549-6400568 Msa1046060:three_prime_UTR 50.0%
CTGGTTCCTGCAAGAACTGA+AGG - chr7_2:6400558-6400577 None:intergenic 50.0%
AGAGAGACGAAGGGTTTGGC+TGG + chr7_2:6397911-6397930 Msa1046060:intron 55.0%
!! TGGTAAGTGAGAGCACCCTC+AGG + chr7_2:6397931-6397950 Msa1046060:intron 55.0%
!! TGAGAGGGTATCCCGCCATA+AGG - chr7_2:6399250-6399269 None:intergenic 55.0%
GCGGGATACCCTCTCAAGTT+AGG + chr7_2:6399254-6399273 Msa1046060:intron 55.0%
CCCACTCCCGCAAAAAGAGA+TGG - chr7_2:6399658-6399677 None:intergenic 55.0%
! GGGCTGCCGTTTCATGTTGT+TGG + chr7_2:6400111-6400130 Msa1046060:intron 55.0%
TTGGCGTGCTCAGTAGCTTG+TGG + chr7_2:6400130-6400149 Msa1046060:intron 55.0%
! TGGCGTGCTCAGTAGCTTGT+GGG + chr7_2:6400131-6400150 Msa1046060:intron 55.0%
!! CTGCTGGTACCATGGATTGG+TGG + chr7_2:6400509-6400528 Msa1046060:three_prime_UTR 55.0%
GAAGGCCACATCCGTCACTA+TGG - chr7_2:6400540-6400559 None:intergenic 55.0%
TGGCTGGCAGTGTGACCTGA+GGG - chr7_2:6397949-6397968 None:intergenic 60.0%
TTGGCTGGCAGTGTGACCTG+AGG - chr7_2:6397950-6397969 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6396949 6400847 6396949 ID=Msa1046060;Name=Msa1046060
chr7_2 mRNA 6396949 6400847 6396949 ID=Msa1046060-mRNA-1;Parent=Msa1046060;Name=Msa1046060-mRNA-1;_AED=0.23;_eAED=0.23;_QI=131|1|1|1|0.66|0.5|4|381|106
chr7_2 exon 6396949 6397059 6396949 ID=Msa1046060-mRNA-1:exon:1473;Parent=Msa1046060-mRNA-1
chr7_2 exon 6397421 6397569 6397421 ID=Msa1046060-mRNA-1:exon:1474;Parent=Msa1046060-mRNA-1
chr7_2 exon 6397670 6397720 6397670 ID=Msa1046060-mRNA-1:exon:1475;Parent=Msa1046060-mRNA-1
chr7_2 exon 6400326 6400847 6400326 ID=Msa1046060-mRNA-1:exon:1476;Parent=Msa1046060-mRNA-1
chr7_2 five_prime_UTR 6396949 6397059 6396949 ID=Msa1046060-mRNA-1:five_prime_utr;Parent=Msa1046060-mRNA-1
chr7_2 five_prime_UTR 6397421 6397440 6397421 ID=Msa1046060-mRNA-1:five_prime_utr;Parent=Msa1046060-mRNA-1
chr7_2 CDS 6397441 6397569 6397441 ID=Msa1046060-mRNA-1:cds;Parent=Msa1046060-mRNA-1
chr7_2 CDS 6397670 6397720 6397670 ID=Msa1046060-mRNA-1:cds;Parent=Msa1046060-mRNA-1
chr7_2 CDS 6400326 6400466 6400326 ID=Msa1046060-mRNA-1:cds;Parent=Msa1046060-mRNA-1
chr7_2 three_prime_UTR 6400467 6400847 6400467 ID=Msa1046060-mRNA-1:three_prime_utr;Parent=Msa1046060-mRNA-1
Gene Sequence

>Msa1046060

ATGGCGACGTTCGAACTTTATCGTAGGTCGACAATCGGAATGTGCCTCACTGAGACTTTGGACGAGATGGTTCAGAATGGAACTCTTAGTCCTGAGATTGCGATTCAGGTTCTCGTTCAGTTTGATAAGTCTATGACTGAAGCTCTGGAAACACAAGTTAAAAGCAAGGTCTCTATCAAGGGACATCTGCATACATACAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTTAAGAATGAAGACAACCAAGAGAATGTTGGACGGGTTAAAATAGTGGCATGTGACTCGAAATTGCTCAGTCAGTAA

Protein sequence

>Msa1046060

MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ*