AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028660 MtrunA17_Chr1g0185271 92.121 165 6 1 1 158 1 165 4.93e-87 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028660 AT4G04614.1 56.589 129 51 3 31 158 52 176 8.57e-42 137
Msa0028660 AT4G04614.2 56.589 129 51 3 31 158 52 176 8.57e-42 137

Find 54 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTGTGTCATCTTCTT+TGG 0.118453 1_1:+53667021 None:intergenic
GTCTGTCTCTGCTTCTTTCT+AGG 0.170078 1_1:-53668659 Msa0028660:intron
CTCTGTTCTTCTTTGTTGAT+TGG 0.201550 1_1:+53668687 None:intergenic
TTCTTTGTGTCATCTTCTTT+GGG 0.233840 1_1:+53667022 None:intergenic
AAATCATTTACAATCTAAAA+TGG 0.234526 1_1:+53666608 None:intergenic
GATTCCTGATTGTTGCTTGC+TGG 0.236203 1_1:+53668716 None:intergenic
ATTCTGATTCTGATTCAAAA+AGG 0.241432 1_1:+53666576 None:intergenic
AGGGACAATGGAGTTTATTC+TGG 0.281268 1_1:-53666767 Msa0028660:CDS
CTGAAGCGATACGGCTATAA+AGG 0.293708 1_1:-53667073 Msa0028660:CDS
TAAATCTACAAAGCAGAAAA+AGG 0.315518 1_1:-53667116 Msa0028660:CDS
CAATCACAAACCCTAATTAC+TGG 0.327652 1_1:+53668746 None:intergenic
CTTCCCATTGCGATTCTCAA+TGG 0.328291 1_1:+53668779 None:intergenic
AGGCGGACCTTCAGTCTTAA+AGG 0.331123 1_1:-53667053 Msa0028660:CDS
ATTCCTGATTGTTGCTTGCT+GGG 0.339631 1_1:+53668717 None:intergenic
TCTGAAAATGATAGTGAAAC+TGG 0.358513 1_1:-53668219 Msa0028660:CDS
CTCAGAAGGAAAAGAAGAAA+AGG 0.400791 1_1:-53666847 Msa0028660:CDS
GGGATCTTGGTCAAGCAAGC+AGG 0.419342 1_1:-53666826 Msa0028660:CDS
GAAAAGAAGAAAAGGGATCT+TGG 0.429119 1_1:-53666839 Msa0028660:CDS
TTCCCATTGCGATTCTCAAT+GGG 0.430572 1_1:+53668780 None:intergenic
TTCTGGTTTCGATTCTTGAT+AGG 0.432577 1_1:-53666750 Msa0028660:exon
TTCAGAGCTTCAAAGTCAAT+TGG 0.442566 1_1:+53667091 None:intergenic
AAGATGACACAAAGAAAGAT+TGG 0.453949 1_1:-53667015 Msa0028660:CDS
GTGTCATCTTCTTTGGGTGG+AGG 0.460313 1_1:+53667028 None:intergenic
GGACCCAGCAAGCAACAATC+AGG 0.472443 1_1:-53668720 Msa0028660:five_prime_UTR
CAGTTGGCATTTGCTCTCCT+AGG 0.493250 1_1:+53666906 None:intergenic
ATTATGTTGAAGAAGAGAAA+AGG 0.499802 1_1:-53666796 Msa0028660:CDS
GGATCTTGGTCAAGCAAGCA+GGG 0.515240 1_1:-53666825 Msa0028660:CDS
TTTGTGTCATCTTCTTTGGG+TGG 0.516808 1_1:+53667025 None:intergenic
TCAGAAGGAAAAGAAGAAAA+GGG 0.533332 1_1:-53666846 Msa0028660:CDS
AGAAGAGAAAAGGCTGTTGA+GGG 0.535745 1_1:-53666786 Msa0028660:CDS
AACCCATTGAGAATCGCAAT+GGG 0.547656 1_1:-53668782 Msa0028660:five_prime_UTR
TCATTCCTAGTCAGAACAGT+TGG 0.556209 1_1:+53666890 None:intergenic
ACACAAAGAAAGATTGGTCC+TGG 0.556354 1_1:-53667009 Msa0028660:CDS
ACAAGAGAGGCTCTTTCCCT+AGG 0.557271 1_1:-53666923 Msa0028660:CDS
AAATGTAGTAGATTCTAGCC+TGG 0.557710 1_1:+53666727 None:intergenic
GTTTCGATTCTTGATAGGCC+AGG 0.558267 1_1:-53666745 Msa0028660:exon
AAAAGGCTGTTGAGGGACAA+TGG 0.563867 1_1:-53666779 Msa0028660:CDS
TTTGAAGCTCTGAAGCGATA+CGG 0.565621 1_1:-53667082 Msa0028660:CDS
TTGGTCCTGGTCCAGTGGAA+AGG 0.567873 1_1:-53666996 Msa0028660:CDS
AGTTGGCATTTGCTCTCCTA+GGG 0.578927 1_1:+53666907 None:intergenic
AAGAAGAGAAAAGGCTGTTG+AGG 0.580825 1_1:-53666787 Msa0028660:CDS
AAACCCATTGAGAATCGCAA+TGG 0.583652 1_1:-53668783 Msa0028660:five_prime_UTR
AAAGATTGGTCCTGGTCCAG+TGG 0.594354 1_1:-53667001 Msa0028660:CDS
GGAGGTACCTTTAAGACTGA+AGG 0.597747 1_1:+53667046 None:intergenic
AAATGCCAACTGTTCTGACT+AGG 0.603014 1_1:-53666895 Msa0028660:CDS
AATTAGGGTTTGTGATTGCG+AGG 0.603978 1_1:-53668741 Msa0028660:five_prime_UTR
CTATGAAGAGGACAATGCCA+TGG 0.617111 1_1:-53668272 Msa0028660:CDS
ATATAATATATACTATGAAG+AGG 0.621276 1_1:-53668284 Msa0028660:exon
TCGTCATCATCATCACTCCA+TGG 0.626378 1_1:+53668255 None:intergenic
ATCTTGGTCAAGCAAGCAGG+GGG 0.627378 1_1:-53666823 Msa0028660:CDS
GATCTTGGTCAAGCAAGCAG+GGG 0.638659 1_1:-53666824 Msa0028660:CDS
AGAGAGAAAGAAAACAAGAG+AGG 0.657420 1_1:-53666936 Msa0028660:CDS
AAGCGATACGGCTATAAAGG+CGG 0.718806 1_1:-53667070 Msa0028660:CDS
AAAGAAGCAGAGACAGACAG+AGG 0.721901 1_1:+53668664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGATTTAATCAATTATT+AGG + chr1_1:53666914-53666933 None:intergenic 10.0%
!!! AATAAATAAAAGTACAAAAA+TGG + chr1_1:53666967-53666986 None:intergenic 10.0%
!! AATAGATTTAATCAATTATT+AGG + chr1_1:53666914-53666933 None:intergenic 10.0%
!!! AATAAATAAAAGTACAAAAA+TGG + chr1_1:53666967-53666986 None:intergenic 10.0%
!!! AACAGTTTTCAAAATTTTAT+GGG - chr1_1:53666858-53666877 Msa0028660:CDS 15.0%
!!! TATTTATTAATCATTTTTGG+AGG - chr1_1:53666987-53667006 Msa0028660:CDS 15.0%
!! ATATAATATATACTATGAAG+AGG - chr1_1:53667073-53667092 Msa0028660:CDS 15.0%
!! AAATCATTTACAATCTAAAA+TGG + chr1_1:53668752-53668771 None:intergenic 15.0%
!!! ATTTTAGATTGTAAATGATT+TGG - chr1_1:53668751-53668770 Msa0028660:five_prime_UTR 15.0%
!! ATAAAAATTATAATGTTGTC+CGG - chr1_1:53668802-53668821 Msa0028660:five_prime_UTR 15.0%
!!! AACAGTTTTCAAAATTTTAT+GGG - chr1_1:53666858-53666877 Msa0028660:CDS 15.0%
!!! TATTTATTAATCATTTTTGG+AGG - chr1_1:53666987-53667006 Msa0028660:CDS 15.0%
!! ATATAATATATACTATGAAG+AGG - chr1_1:53667073-53667092 Msa0028660:CDS 15.0%
!! AAATCATTTACAATCTAAAA+TGG + chr1_1:53668752-53668771 None:intergenic 15.0%
!!! ATTTTAGATTGTAAATGATT+TGG - chr1_1:53668751-53668770 Msa0028660:five_prime_UTR 15.0%
!!! TATGCTTTTTTGTTTTGTTT+TGG - chr1_1:53666750-53666769 Msa0028660:exon 20.0%
!!! GAACAGTTTTCAAAATTTTA+TGG - chr1_1:53666857-53666876 Msa0028660:CDS 20.0%
!! TTGTTTATGTGTTAATTAAC+AGG - chr1_1:53667039-53667058 Msa0028660:CDS 20.0%
!! TGTTTATGTGTTAATTAACA+GGG - chr1_1:53667040-53667059 Msa0028660:CDS 20.0%
!!! TAAAATACCTTTGGATTTTT+TGG + chr1_1:53667166-53667185 None:intergenic 20.0%
!! ATTTAATTCAACGTAGTTAT+AGG + chr1_1:53667200-53667219 None:intergenic 20.0%
!! ATAATCACATTAAGAAAGAA+CGG + chr1_1:53667490-53667509 None:intergenic 20.0%
!! GAAATCTAATGTGATAAATT+AGG - chr1_1:53667643-53667662 Msa0028660:intron 20.0%
!!! ATTGTTTTAGATTTTGTTGT+TGG - chr1_1:53667793-53667812 Msa0028660:intron 20.0%
!!! TTGTTTTAGATTTTGTTGTT+GGG - chr1_1:53667794-53667813 Msa0028660:intron 20.0%
!! AAGAACTATTATAGCATTAT+CGG + chr1_1:53667911-53667930 None:intergenic 20.0%
!! ATATTCTAATTTACATTTCC+TGG + chr1_1:53667998-53668017 None:intergenic 20.0%
!! GGAAATGTAAATTAGAATAT+CGG - chr1_1:53667998-53668017 Msa0028660:intron 20.0%
!! GAAATGTAAATTAGAATATC+GGG - chr1_1:53667999-53668018 Msa0028660:intron 20.0%
!! AAATGTAAATTAGAATATCG+GGG - chr1_1:53668000-53668019 Msa0028660:intron 20.0%
!! AGACAATAATATATTGCTAA+CGG + chr1_1:53668037-53668056 None:intergenic 20.0%
!!! ATCTACTACATTTTGTATAA+AGG - chr1_1:53668640-53668659 Msa0028660:intron 20.0%
!! TAAAAATTATAATGTTGTCC+GGG - chr1_1:53668803-53668822 Msa0028660:five_prime_UTR 20.0%
!!! TATGCTTTTTTGTTTTGTTT+TGG - chr1_1:53666750-53666769 Msa0028660:exon 20.0%
!!! GAACAGTTTTCAAAATTTTA+TGG - chr1_1:53666857-53666876 Msa0028660:CDS 20.0%
!! TTGTTTATGTGTTAATTAAC+AGG - chr1_1:53667039-53667058 Msa0028660:CDS 20.0%
!! TGTTTATGTGTTAATTAACA+GGG - chr1_1:53667040-53667059 Msa0028660:CDS 20.0%
!!! TAAAATACCTTTGGATTTTT+TGG + chr1_1:53667166-53667185 None:intergenic 20.0%
!! ATTTAATTCAACGTAGTTAT+AGG + chr1_1:53667200-53667219 None:intergenic 20.0%
!! ATAATCACATTAAGAAAGAA+CGG + chr1_1:53667490-53667509 None:intergenic 20.0%
!! GAAATCTAATGTGATAAATT+AGG - chr1_1:53667643-53667662 Msa0028660:intron 20.0%
!!! ATTGTTTTAGATTTTGTTGT+TGG - chr1_1:53667793-53667812 Msa0028660:intron 20.0%
!!! TTGTTTTAGATTTTGTTGTT+GGG - chr1_1:53667794-53667813 Msa0028660:intron 20.0%
!! AAGAACTATTATAGCATTAT+CGG + chr1_1:53667911-53667930 None:intergenic 20.0%
!! ATATTCTAATTTACATTTCC+TGG + chr1_1:53667998-53668017 None:intergenic 20.0%
!! GGAAATGTAAATTAGAATAT+CGG - chr1_1:53667998-53668017 Msa0028660:intron 20.0%
!! GAAATGTAAATTAGAATATC+GGG - chr1_1:53667999-53668018 Msa0028660:intron 20.0%
!! AAATGTAAATTAGAATATCG+GGG - chr1_1:53668000-53668019 Msa0028660:intron 20.0%
!! AGACAATAATATATTGCTAA+CGG + chr1_1:53668037-53668056 None:intergenic 20.0%
!!! ATCTACTACATTTTGTATAA+AGG - chr1_1:53668640-53668659 Msa0028660:intron 20.0%
!! AACAGACATGAATGAATTTT+GGG + chr1_1:53666786-53666805 None:intergenic 25.0%
!! AAACAGACATGAATGAATTT+TGG + chr1_1:53666787-53666806 None:intergenic 25.0%
!!! TAATCATTTTTGGAGGTTTA+AGG - chr1_1:53666994-53667013 Msa0028660:CDS 25.0%
! CGTTGAATTAAATGTTTAAG+TGG - chr1_1:53667207-53667226 Msa0028660:intron 25.0%
! GATTTATGAAACACTAACAA+CGG - chr1_1:53667273-53667292 Msa0028660:intron 25.0%
!!! ACACTTTTAATCTGAAGTAT+CGG - chr1_1:53667390-53667409 Msa0028660:intron 25.0%
! TGACAAGTGAAAATAGTATT+TGG - chr1_1:53667427-53667446 Msa0028660:intron 25.0%
! AAAACACAAACACTAATTGT+GGG + chr1_1:53667523-53667542 None:intergenic 25.0%
!! ACAATTAGTGTTTGTGTTTT+GGG - chr1_1:53667523-53667542 Msa0028660:intron 25.0%
!! ATTATCTGAAGATCATTTTG+TGG - chr1_1:53667618-53667637 Msa0028660:intron 25.0%
! AGTGATAGCTGATAATATTA+TGG - chr1_1:53667694-53667713 Msa0028660:intron 25.0%
!!! TGTTTTAGATTTTGTTGTTG+GGG - chr1_1:53667795-53667814 Msa0028660:intron 25.0%
! TAAATCTACAAAGCAGAAAA+AGG - chr1_1:53668241-53668260 Msa0028660:CDS 25.0%
! ATTATGTTGAAGAAGAGAAA+AGG - chr1_1:53668561-53668580 Msa0028660:intron 25.0%
!!! TCATGTCATTTTGTTATACA+AGG - chr1_1:53668678-53668697 Msa0028660:five_prime_UTR 25.0%
!!! CATTTTGTTATACAAGGATT+TGG - chr1_1:53668684-53668703 Msa0028660:five_prime_UTR 25.0%
! TTCTGATTCTGATTCAAAAA+GGG + chr1_1:53668783-53668802 None:intergenic 25.0%
! ATTCTGATTCTGATTCAAAA+AGG + chr1_1:53668784-53668803 None:intergenic 25.0%
!! AACAGACATGAATGAATTTT+GGG + chr1_1:53666786-53666805 None:intergenic 25.0%
!! AAACAGACATGAATGAATTT+TGG + chr1_1:53666787-53666806 None:intergenic 25.0%
!!! TAATCATTTTTGGAGGTTTA+AGG - chr1_1:53666994-53667013 Msa0028660:CDS 25.0%
! CGTTGAATTAAATGTTTAAG+TGG - chr1_1:53667207-53667226 Msa0028660:intron 25.0%
! GATTTATGAAACACTAACAA+CGG - chr1_1:53667273-53667292 Msa0028660:intron 25.0%
!!! ACACTTTTAATCTGAAGTAT+CGG - chr1_1:53667390-53667409 Msa0028660:intron 25.0%
! TGACAAGTGAAAATAGTATT+TGG - chr1_1:53667427-53667446 Msa0028660:intron 25.0%
! AAAACACAAACACTAATTGT+GGG + chr1_1:53667523-53667542 None:intergenic 25.0%
!! ACAATTAGTGTTTGTGTTTT+GGG - chr1_1:53667523-53667542 Msa0028660:intron 25.0%
!! ATTATCTGAAGATCATTTTG+TGG - chr1_1:53667618-53667637 Msa0028660:intron 25.0%
! AGTGATAGCTGATAATATTA+TGG - chr1_1:53667694-53667713 Msa0028660:intron 25.0%
!!! TGTTTTAGATTTTGTTGTTG+GGG - chr1_1:53667795-53667814 Msa0028660:intron 25.0%
! TAAATCTACAAAGCAGAAAA+AGG - chr1_1:53668241-53668260 Msa0028660:CDS 25.0%
! ATTATGTTGAAGAAGAGAAA+AGG - chr1_1:53668561-53668580 Msa0028660:intron 25.0%
!!! TCATGTCATTTTGTTATACA+AGG - chr1_1:53668678-53668697 Msa0028660:five_prime_UTR 25.0%
!!! CATTTTGTTATACAAGGATT+TGG - chr1_1:53668684-53668703 Msa0028660:five_prime_UTR 25.0%
! TTCTGATTCTGATTCAAAAA+GGG + chr1_1:53668783-53668802 None:intergenic 25.0%
! ATTCTGATTCTGATTCAAAA+AGG + chr1_1:53668784-53668803 None:intergenic 25.0%
ACCCTAAAAACCAGTAATTA+GGG - chr1_1:53666601-53666620 Msa0028660:three_prime_UTR 30.0%
!!! ACCCTAATTACTGGTTTTTA+GGG + chr1_1:53666605-53666624 None:intergenic 30.0%
!!! AACCCTAATTACTGGTTTTT+AGG + chr1_1:53666606-53666625 None:intergenic 30.0%
AAGCATAAAGCTGAAAAACA+TGG + chr1_1:53666737-53666756 None:intergenic 30.0%
! ACAGACATGAATGAATTTTG+GGG + chr1_1:53666785-53666804 None:intergenic 30.0%
TCAATTATTAGGAAGTGATG+AGG + chr1_1:53666903-53666922 None:intergenic 30.0%
! TCTGAAAATGATAGTGAAAC+TGG - chr1_1:53667138-53667157 Msa0028660:intron 30.0%
GATACTTCAGATTAAAAGTG+TGG + chr1_1:53667391-53667410 None:intergenic 30.0%
AAATGTACTTACTTGAACCT+AGG - chr1_1:53667452-53667471 Msa0028660:intron 30.0%
CAAAACACAAACACTAATTG+TGG + chr1_1:53667524-53667543 None:intergenic 30.0%
! CACAATTAGTGTTTGTGTTT+TGG - chr1_1:53667522-53667541 Msa0028660:intron 30.0%
!! AAAATCTCATCTCTAGAATG+TGG - chr1_1:53667557-53667576 Msa0028660:intron 30.0%
ATGTGATAAATTAGGAGTTC+TGG - chr1_1:53667651-53667670 Msa0028660:intron 30.0%
! TCCTTGTATTTCCTTGTTAT+TGG - chr1_1:53667758-53667777 Msa0028660:intron 30.0%
ACCAATAACAAGGAAATACA+AGG + chr1_1:53667762-53667781 None:intergenic 30.0%
ATCACAATACACCAATAACA+AGG + chr1_1:53667772-53667791 None:intergenic 30.0%
! AACTAGAGTAGATATTTTCC+AGG - chr1_1:53667977-53667996 Msa0028660:intron 30.0%
CAATAATATATTGCTAACGG+AGG + chr1_1:53668034-53668053 None:intergenic 30.0%
GCTAATTAAGTCACACAATA+TGG + chr1_1:53668068-53668087 None:intergenic 30.0%
ACTAGTAACTAAGCAACATA+TGG + chr1_1:53668198-53668217 None:intergenic 30.0%
TTCTTTGTGTCATCTTCTTT+GGG + chr1_1:53668338-53668357 None:intergenic 30.0%
TTTCTTTGTGTCATCTTCTT+TGG + chr1_1:53668339-53668358 None:intergenic 30.0%
AAGATGACACAAAGAAAGAT+TGG - chr1_1:53668342-53668361 Msa0028660:intron 30.0%
TCAGAAGGAAAAGAAGAAAA+GGG - chr1_1:53668511-53668530 Msa0028660:intron 30.0%
ACCCTAAAAACCAGTAATTA+GGG - chr1_1:53666601-53666620 Msa0028660:three_prime_UTR 30.0%
!!! ACCCTAATTACTGGTTTTTA+GGG + chr1_1:53666605-53666624 None:intergenic 30.0%
!!! AACCCTAATTACTGGTTTTT+AGG + chr1_1:53666606-53666625 None:intergenic 30.0%
AAGCATAAAGCTGAAAAACA+TGG + chr1_1:53666737-53666756 None:intergenic 30.0%
! ACAGACATGAATGAATTTTG+GGG + chr1_1:53666785-53666804 None:intergenic 30.0%
TCAATTATTAGGAAGTGATG+AGG + chr1_1:53666903-53666922 None:intergenic 30.0%
! TCTGAAAATGATAGTGAAAC+TGG - chr1_1:53667138-53667157 Msa0028660:intron 30.0%
GATACTTCAGATTAAAAGTG+TGG + chr1_1:53667391-53667410 None:intergenic 30.0%
AAATGTACTTACTTGAACCT+AGG - chr1_1:53667452-53667471 Msa0028660:intron 30.0%
CAAAACACAAACACTAATTG+TGG + chr1_1:53667524-53667543 None:intergenic 30.0%
! CACAATTAGTGTTTGTGTTT+TGG - chr1_1:53667522-53667541 Msa0028660:intron 30.0%
!! AAAATCTCATCTCTAGAATG+TGG - chr1_1:53667557-53667576 Msa0028660:intron 30.0%
ATGTGATAAATTAGGAGTTC+TGG - chr1_1:53667651-53667670 Msa0028660:intron 30.0%
! TCCTTGTATTTCCTTGTTAT+TGG - chr1_1:53667758-53667777 Msa0028660:intron 30.0%
ACCAATAACAAGGAAATACA+AGG + chr1_1:53667762-53667781 None:intergenic 30.0%
ATCACAATACACCAATAACA+AGG + chr1_1:53667772-53667791 None:intergenic 30.0%
! AACTAGAGTAGATATTTTCC+AGG - chr1_1:53667977-53667996 Msa0028660:intron 30.0%
CAATAATATATTGCTAACGG+AGG + chr1_1:53668034-53668053 None:intergenic 30.0%
GCTAATTAAGTCACACAATA+TGG + chr1_1:53668068-53668087 None:intergenic 30.0%
ACTAGTAACTAAGCAACATA+TGG + chr1_1:53668198-53668217 None:intergenic 30.0%
TTCTTTGTGTCATCTTCTTT+GGG + chr1_1:53668338-53668357 None:intergenic 30.0%
TTTCTTTGTGTCATCTTCTT+TGG + chr1_1:53668339-53668358 None:intergenic 30.0%
AAGATGACACAAAGAAAGAT+TGG - chr1_1:53668342-53668361 Msa0028660:intron 30.0%
TCAGAAGGAAAAGAAGAAAA+GGG - chr1_1:53668511-53668530 Msa0028660:intron 30.0%
GACCCTAAAAACCAGTAATT+AGG - chr1_1:53666600-53666619 Msa0028660:three_prime_UTR 35.0%
CAATCACAAACCCTAATTAC+TGG + chr1_1:53666614-53666633 None:intergenic 35.0%
CTCTGTTCTTCTTTGTTGAT+TGG + chr1_1:53666673-53666692 None:intergenic 35.0%
!! TGAATGAATTTTGGGGGAAA+AGG + chr1_1:53666778-53666797 None:intergenic 35.0%
! CAGACATGAATGAATTTTGG+GGG + chr1_1:53666784-53666803 None:intergenic 35.0%
GATGCACACTAAAATACCTT+TGG + chr1_1:53667175-53667194 None:intergenic 35.0%
TGACACTAACACTTTGATGT+TGG - chr1_1:53667305-53667324 Msa0028660:intron 35.0%
AATCTAATCGTGTGTAGTGT+TGG - chr1_1:53667355-53667374 Msa0028660:intron 35.0%
AAGGAATCTCTTCTACAATG+GGG + chr1_1:53667743-53667762 None:intergenic 35.0%
CAAGGAATCTCTTCTACAAT+GGG + chr1_1:53667744-53667763 None:intergenic 35.0%
ACAAGGAATCTCTTCTACAA+TGG + chr1_1:53667745-53667764 None:intergenic 35.0%
AGATGGTTCATAAACAGTTG+TGG - chr1_1:53667858-53667877 Msa0028660:intron 35.0%
! ATAGCATTATCGGCTGATTT+AGG + chr1_1:53667901-53667920 None:intergenic 35.0%
CAAGAGTTTCTTGACTTTCA+AGG - chr1_1:53667953-53667972 Msa0028660:intron 35.0%
!! TTCTGAAATCCGTATCATGA+TGG - chr1_1:53668114-53668133 Msa0028660:intron 35.0%
AGTATGAAGCCATCATGATA+CGG + chr1_1:53668126-53668145 None:intergenic 35.0%
TTAACTTACTTCATGTCTGC+AGG - chr1_1:53668218-53668237 Msa0028660:CDS 35.0%
TTCAGAGCTTCAAAGTCAAT+TGG + chr1_1:53668269-53668288 None:intergenic 35.0%
AGAGAGAAAGAAAACAAGAG+AGG - chr1_1:53668421-53668440 Msa0028660:intron 35.0%
! GAATCTTTCCTTTTCTCAGA+AGG - chr1_1:53668496-53668515 Msa0028660:intron 35.0%
!! CTTCTTTTCCTTCTGAGAAA+AGG + chr1_1:53668507-53668526 None:intergenic 35.0%
CTCAGAAGGAAAAGAAGAAA+AGG - chr1_1:53668510-53668529 Msa0028660:intron 35.0%
GAAAAGAAGAAAAGGGATCT+TGG - chr1_1:53668518-53668537 Msa0028660:intron 35.0%
!! TTCTGGTTTCGATTCTTGAT+AGG - chr1_1:53668607-53668626 Msa0028660:intron 35.0%
AAATGTAGTAGATTCTAGCC+TGG + chr1_1:53668633-53668652 None:intergenic 35.0%
!!! GTTTTTTGTTAGTTACACCC+CGG + chr1_1:53666558-53666577 None:intergenic 35.0%
GACCCTAAAAACCAGTAATT+AGG - chr1_1:53666600-53666619 Msa0028660:three_prime_UTR 35.0%
CAATCACAAACCCTAATTAC+TGG + chr1_1:53666614-53666633 None:intergenic 35.0%
CTCTGTTCTTCTTTGTTGAT+TGG + chr1_1:53666673-53666692 None:intergenic 35.0%
!! TGAATGAATTTTGGGGGAAA+AGG + chr1_1:53666778-53666797 None:intergenic 35.0%
! CAGACATGAATGAATTTTGG+GGG + chr1_1:53666784-53666803 None:intergenic 35.0%
GATGCACACTAAAATACCTT+TGG + chr1_1:53667175-53667194 None:intergenic 35.0%
TGACACTAACACTTTGATGT+TGG - chr1_1:53667305-53667324 Msa0028660:intron 35.0%
AATCTAATCGTGTGTAGTGT+TGG - chr1_1:53667355-53667374 Msa0028660:intron 35.0%
AAGGAATCTCTTCTACAATG+GGG + chr1_1:53667743-53667762 None:intergenic 35.0%
CAAGGAATCTCTTCTACAAT+GGG + chr1_1:53667744-53667763 None:intergenic 35.0%
ACAAGGAATCTCTTCTACAA+TGG + chr1_1:53667745-53667764 None:intergenic 35.0%
AGATGGTTCATAAACAGTTG+TGG - chr1_1:53667858-53667877 Msa0028660:intron 35.0%
! ATAGCATTATCGGCTGATTT+AGG + chr1_1:53667901-53667920 None:intergenic 35.0%
CAAGAGTTTCTTGACTTTCA+AGG - chr1_1:53667953-53667972 Msa0028660:intron 35.0%
!! TTCTGAAATCCGTATCATGA+TGG - chr1_1:53668114-53668133 Msa0028660:intron 35.0%
AGTATGAAGCCATCATGATA+CGG + chr1_1:53668126-53668145 None:intergenic 35.0%
TTAACTTACTTCATGTCTGC+AGG - chr1_1:53668218-53668237 Msa0028660:CDS 35.0%
TTCAGAGCTTCAAAGTCAAT+TGG + chr1_1:53668269-53668288 None:intergenic 35.0%
AGAGAGAAAGAAAACAAGAG+AGG - chr1_1:53668421-53668440 Msa0028660:intron 35.0%
! GAATCTTTCCTTTTCTCAGA+AGG - chr1_1:53668496-53668515 Msa0028660:intron 35.0%
!! CTTCTTTTCCTTCTGAGAAA+AGG + chr1_1:53668507-53668526 None:intergenic 35.0%
CTCAGAAGGAAAAGAAGAAA+AGG - chr1_1:53668510-53668529 Msa0028660:intron 35.0%
GAAAAGAAGAAAAGGGATCT+TGG - chr1_1:53668518-53668537 Msa0028660:intron 35.0%
!! TTCTGGTTTCGATTCTTGAT+AGG - chr1_1:53668607-53668626 Msa0028660:intron 35.0%
AAATGTAGTAGATTCTAGCC+TGG + chr1_1:53668633-53668652 None:intergenic 35.0%
AAACCCATTGAGAATCGCAA+TGG - chr1_1:53666574-53666593 Msa0028660:three_prime_UTR 40.0%
AACCCATTGAGAATCGCAAT+GGG - chr1_1:53666575-53666594 Msa0028660:three_prime_UTR 40.0%
TTCCCATTGCGATTCTCAAT+GGG + chr1_1:53666580-53666599 None:intergenic 40.0%
AATTAGGGTTTGTGATTGCG+AGG - chr1_1:53666616-53666635 Msa0028660:three_prime_UTR 40.0%
! ATTCCTGATTGTTGCTTGCT+GGG + chr1_1:53666643-53666662 None:intergenic 40.0%
ACTGGAGCCAAAAAATCCAA+AGG - chr1_1:53667156-53667175 Msa0028660:intron 40.0%
CTTGAACCTAGGATGTTGAT+AGG - chr1_1:53667463-53667482 Msa0028660:intron 40.0%
TTCAGATAATTGCAACGCAG+AGG + chr1_1:53667608-53667627 None:intergenic 40.0%
ACTAACTGAAGGTCAAGATG+GGG + chr1_1:53667830-53667849 None:intergenic 40.0%
CACTAACTGAAGGTCAAGAT+GGG + chr1_1:53667831-53667850 None:intergenic 40.0%
TCTTGCATTGCACTAACTGA+AGG + chr1_1:53667841-53667860 None:intergenic 40.0%
TCAGTTAGTGCAATGCAAGA+TGG - chr1_1:53667841-53667860 Msa0028660:intron 40.0%
AACTAAGCAACATATGGCAG+TGG + chr1_1:53668192-53668211 None:intergenic 40.0%
!! TTTGAAGCTCTGAAGCGATA+CGG - chr1_1:53668275-53668294 Msa0028660:exon 40.0%
TTTGTGTCATCTTCTTTGGG+TGG + chr1_1:53668335-53668354 None:intergenic 40.0%
! ACACAAAGAAAGATTGGTCC+TGG - chr1_1:53668348-53668367 Msa0028660:intron 40.0%
AAATGCCAACTGTTCTGACT+AGG - chr1_1:53668462-53668481 Msa0028660:intron 40.0%
TCATTCCTAGTCAGAACAGT+TGG + chr1_1:53668470-53668489 None:intergenic 40.0%
AAGAAGAGAAAAGGCTGTTG+AGG - chr1_1:53668570-53668589 Msa0028660:intron 40.0%
AGAAGAGAAAAGGCTGTTGA+GGG - chr1_1:53668571-53668590 Msa0028660:intron 40.0%
AGGGACAATGGAGTTTATTC+TGG - chr1_1:53668590-53668609 Msa0028660:intron 40.0%
AAACCCATTGAGAATCGCAA+TGG - chr1_1:53666574-53666593 Msa0028660:three_prime_UTR 40.0%
AACCCATTGAGAATCGCAAT+GGG - chr1_1:53666575-53666594 Msa0028660:three_prime_UTR 40.0%
TTCCCATTGCGATTCTCAAT+GGG + chr1_1:53666580-53666599 None:intergenic 40.0%
AATTAGGGTTTGTGATTGCG+AGG - chr1_1:53666616-53666635 Msa0028660:three_prime_UTR 40.0%
! ATTCCTGATTGTTGCTTGCT+GGG + chr1_1:53666643-53666662 None:intergenic 40.0%
ACTGGAGCCAAAAAATCCAA+AGG - chr1_1:53667156-53667175 Msa0028660:intron 40.0%
CTTGAACCTAGGATGTTGAT+AGG - chr1_1:53667463-53667482 Msa0028660:intron 40.0%
TTCAGATAATTGCAACGCAG+AGG + chr1_1:53667608-53667627 None:intergenic 40.0%
ACTAACTGAAGGTCAAGATG+GGG + chr1_1:53667830-53667849 None:intergenic 40.0%
CACTAACTGAAGGTCAAGAT+GGG + chr1_1:53667831-53667850 None:intergenic 40.0%
TCTTGCATTGCACTAACTGA+AGG + chr1_1:53667841-53667860 None:intergenic 40.0%
TCAGTTAGTGCAATGCAAGA+TGG - chr1_1:53667841-53667860 Msa0028660:intron 40.0%
AACTAAGCAACATATGGCAG+TGG + chr1_1:53668192-53668211 None:intergenic 40.0%
!! TTTGAAGCTCTGAAGCGATA+CGG - chr1_1:53668275-53668294 Msa0028660:exon 40.0%
TTTGTGTCATCTTCTTTGGG+TGG + chr1_1:53668335-53668354 None:intergenic 40.0%
! ACACAAAGAAAGATTGGTCC+TGG - chr1_1:53668348-53668367 Msa0028660:intron 40.0%
AAATGCCAACTGTTCTGACT+AGG - chr1_1:53668462-53668481 Msa0028660:intron 40.0%
TCATTCCTAGTCAGAACAGT+TGG + chr1_1:53668470-53668489 None:intergenic 40.0%
AAGAAGAGAAAAGGCTGTTG+AGG - chr1_1:53668570-53668589 Msa0028660:intron 40.0%
AGAAGAGAAAAGGCTGTTGA+GGG - chr1_1:53668571-53668590 Msa0028660:intron 40.0%
AGGGACAATGGAGTTTATTC+TGG - chr1_1:53668590-53668609 Msa0028660:intron 40.0%
CTTCCCATTGCGATTCTCAA+TGG + chr1_1:53666581-53666600 None:intergenic 45.0%
! GATTCCTGATTGTTGCTTGC+TGG + chr1_1:53666644-53666663 None:intergenic 45.0%
AAAGAAGCAGAGACAGACAG+AGG + chr1_1:53666696-53666715 None:intergenic 45.0%
GTCTGTCTCTGCTTCTTTCT+AGG - chr1_1:53666698-53666717 Msa0028660:three_prime_UTR 45.0%
CTATGAAGAGGACAATGCCA+TGG - chr1_1:53667085-53667104 Msa0028660:CDS 45.0%
TCGTCATCATCATCACTCCA+TGG + chr1_1:53667105-53667124 None:intergenic 45.0%
!! TCGTGTGTAGTGTTGGTGTA+CGG - chr1_1:53667362-53667381 Msa0028660:intron 45.0%
AACGGACCTATCAACATCCT+AGG + chr1_1:53667472-53667491 None:intergenic 45.0%
AACGCAGAGGTTTCATACCT+TGG + chr1_1:53667595-53667614 None:intergenic 45.0%
GCACTAACTGAAGGTCAAGA+TGG + chr1_1:53667832-53667851 None:intergenic 45.0%
CTGAAGCGATACGGCTATAA+AGG - chr1_1:53668284-53668303 Msa0028660:exon 45.0%
AAGCGATACGGCTATAAAGG+CGG - chr1_1:53668287-53668306 Msa0028660:exon 45.0%
!! GGAGGTACCTTTAAGACTGA+AGG + chr1_1:53668314-53668333 None:intergenic 45.0%
! TTTTTCCTTTCCACTGGACC+AGG + chr1_1:53668369-53668388 None:intergenic 45.0%
AAAGGAAAAACGCGTCGAGA+AGG - chr1_1:53668379-53668398 Msa0028660:intron 45.0%
AGTTGGCATTTGCTCTCCTA+GGG + chr1_1:53668453-53668472 None:intergenic 45.0%
AAAAGGCTGTTGAGGGACAA+TGG - chr1_1:53668578-53668597 Msa0028660:intron 45.0%
GTTTCGATTCTTGATAGGCC+AGG - chr1_1:53668612-53668631 Msa0028660:intron 45.0%
CTTCCCATTGCGATTCTCAA+TGG + chr1_1:53666581-53666600 None:intergenic 45.0%
! GATTCCTGATTGTTGCTTGC+TGG + chr1_1:53666644-53666663 None:intergenic 45.0%
AAAGAAGCAGAGACAGACAG+AGG + chr1_1:53666696-53666715 None:intergenic 45.0%
GTCTGTCTCTGCTTCTTTCT+AGG - chr1_1:53666698-53666717 Msa0028660:three_prime_UTR 45.0%
CTATGAAGAGGACAATGCCA+TGG - chr1_1:53667085-53667104 Msa0028660:CDS 45.0%
TCGTCATCATCATCACTCCA+TGG + chr1_1:53667105-53667124 None:intergenic 45.0%
!! TCGTGTGTAGTGTTGGTGTA+CGG - chr1_1:53667362-53667381 Msa0028660:intron 45.0%
AACGGACCTATCAACATCCT+AGG + chr1_1:53667472-53667491 None:intergenic 45.0%
AACGCAGAGGTTTCATACCT+TGG + chr1_1:53667595-53667614 None:intergenic 45.0%
GCACTAACTGAAGGTCAAGA+TGG + chr1_1:53667832-53667851 None:intergenic 45.0%
CTGAAGCGATACGGCTATAA+AGG - chr1_1:53668284-53668303 Msa0028660:exon 45.0%
AAGCGATACGGCTATAAAGG+CGG - chr1_1:53668287-53668306 Msa0028660:exon 45.0%
!! GGAGGTACCTTTAAGACTGA+AGG + chr1_1:53668314-53668333 None:intergenic 45.0%
! TTTTTCCTTTCCACTGGACC+AGG + chr1_1:53668369-53668388 None:intergenic 45.0%
AAAGGAAAAACGCGTCGAGA+AGG - chr1_1:53668379-53668398 Msa0028660:intron 45.0%
AGTTGGCATTTGCTCTCCTA+GGG + chr1_1:53668453-53668472 None:intergenic 45.0%
AAAAGGCTGTTGAGGGACAA+TGG - chr1_1:53668578-53668597 Msa0028660:intron 45.0%
GTTTCGATTCTTGATAGGCC+AGG - chr1_1:53668612-53668631 Msa0028660:intron 45.0%
!!! ATTTATTTATTAATCATTTT+TGG - chr1_1:53666984-53667003 Msa0028660:CDS 5.0%
!!! ATTTATTTATTAATCATTTT+TGG - chr1_1:53666984-53667003 Msa0028660:CDS 5.0%
CGCGTGCAGTAGTAACATTG+AGG + chr1_1:53666813-53666832 None:intergenic 50.0%
AATGTTACTACTGCACGCGC+AGG - chr1_1:53666814-53666833 Msa0028660:CDS 50.0%
! TGTGGATTGACGCTCATCCA+AGG - chr1_1:53667575-53667594 Msa0028660:intron 50.0%
AGGCGGACCTTCAGTCTTAA+AGG - chr1_1:53668304-53668323 Msa0028660:intron 50.0%
GTGTCATCTTCTTTGGGTGG+AGG + chr1_1:53668332-53668351 None:intergenic 50.0%
! AAAGATTGGTCCTGGTCCAG+TGG - chr1_1:53668356-53668375 Msa0028660:intron 50.0%
! GACGCGTTTTTCCTTTCCAC+TGG + chr1_1:53668375-53668394 None:intergenic 50.0%
ACAAGAGAGGCTCTTTCCCT+AGG - chr1_1:53668434-53668453 Msa0028660:intron 50.0%
CAGTTGGCATTTGCTCTCCT+AGG + chr1_1:53668454-53668473 None:intergenic 50.0%
GGATCTTGGTCAAGCAAGCA+GGG - chr1_1:53668532-53668551 Msa0028660:intron 50.0%
GATCTTGGTCAAGCAAGCAG+GGG - chr1_1:53668533-53668552 Msa0028660:intron 50.0%
ATCTTGGTCAAGCAAGCAGG+GGG - chr1_1:53668534-53668553 Msa0028660:intron 50.0%
CGCGTGCAGTAGTAACATTG+AGG + chr1_1:53666813-53666832 None:intergenic 50.0%
AATGTTACTACTGCACGCGC+AGG - chr1_1:53666814-53666833 Msa0028660:CDS 50.0%
! TGTGGATTGACGCTCATCCA+AGG - chr1_1:53667575-53667594 Msa0028660:intron 50.0%
AGGCGGACCTTCAGTCTTAA+AGG - chr1_1:53668304-53668323 Msa0028660:intron 50.0%
GTGTCATCTTCTTTGGGTGG+AGG + chr1_1:53668332-53668351 None:intergenic 50.0%
! AAAGATTGGTCCTGGTCCAG+TGG - chr1_1:53668356-53668375 Msa0028660:intron 50.0%
! GACGCGTTTTTCCTTTCCAC+TGG + chr1_1:53668375-53668394 None:intergenic 50.0%
ACAAGAGAGGCTCTTTCCCT+AGG - chr1_1:53668434-53668453 Msa0028660:intron 50.0%
CAGTTGGCATTTGCTCTCCT+AGG + chr1_1:53668454-53668473 None:intergenic 50.0%
GGATCTTGGTCAAGCAAGCA+GGG - chr1_1:53668532-53668551 Msa0028660:intron 50.0%
GATCTTGGTCAAGCAAGCAG+GGG - chr1_1:53668533-53668552 Msa0028660:intron 50.0%
ATCTTGGTCAAGCAAGCAGG+GGG - chr1_1:53668534-53668553 Msa0028660:intron 50.0%
GGACCCAGCAAGCAACAATC+AGG - chr1_1:53666637-53666656 Msa0028660:three_prime_UTR 55.0%
TTGGTCCTGGTCCAGTGGAA+AGG - chr1_1:53668361-53668380 Msa0028660:intron 55.0%
GGGATCTTGGTCAAGCAAGC+AGG - chr1_1:53668531-53668550 Msa0028660:intron 55.0%
GGACCCAGCAAGCAACAATC+AGG - chr1_1:53666637-53666656 Msa0028660:three_prime_UTR 55.0%
TTGGTCCTGGTCCAGTGGAA+AGG - chr1_1:53668361-53668380 Msa0028660:intron 55.0%
GGGATCTTGGTCAAGCAAGC+AGG - chr1_1:53668531-53668550 Msa0028660:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 53666557 53668822 53666557 ID=Msa0028660;Name=Msa0028660
chr1_1 mRNA 53666557 53668822 53666557 ID=Msa0028660-mRNA-1;Parent=Msa0028660;Name=Msa0028660-mRNA-1;_AED=0.28;_eAED=0.28;_QI=189|1|1|1|0.5|0.33|3|197|158
chr1_1 exon 53666557 53667139 53666557 ID=Msa0028660-mRNA-1:exon:15849;Parent=Msa0028660-mRNA-1
chr1_1 exon 53668202 53668318 53668202 ID=Msa0028660-mRNA-1:exon:15848;Parent=Msa0028660-mRNA-1
chr1_1 exon 53668660 53668822 53668660 ID=Msa0028660-mRNA-1:exon:15847;Parent=Msa0028660-mRNA-1
chr1_1 five_prime_UTR 53668660 53668822 53668660 ID=Msa0028660-mRNA-1:five_prime_utr;Parent=Msa0028660-mRNA-1
chr1_1 five_prime_UTR 53668293 53668318 53668293 ID=Msa0028660-mRNA-1:five_prime_utr;Parent=Msa0028660-mRNA-1
chr1_1 CDS 53668202 53668292 53668202 ID=Msa0028660-mRNA-1:cds;Parent=Msa0028660-mRNA-1
chr1_1 CDS 53666754 53667139 53666754 ID=Msa0028660-mRNA-1:cds;Parent=Msa0028660-mRNA-1
chr1_1 three_prime_UTR 53666557 53666753 53666557 ID=Msa0028660-mRNA-1:three_prime_utr;Parent=Msa0028660-mRNA-1
Gene Sequence

>Msa0028660

ATGAAGAGGACAATGCCATGGAGTGATGATGATGACGACTCATCTTCAGACTCTGAAAATGATAGTGAAACTGGAGCCAAAAAATCCAAAGGTAAATCTACAAAGCAGAAAAAGGCTCCAATTGACTTTGAAGCTCTGAAGCGATACGGCTATAAAGGCGGACCTTCAGTCTTAAAGGTACCTCCACCCAAAGAAGATGACACAAAGAAAGATTGGTCCTGGTCCAGTGGAAAGGAAAAACGCGTCGAGAAGGAAGTTGAAGAAACATATGAAGAGAGAAAGAAAACAAGAGAGGCTCTTTCCCTAGGAGAGCAAATGCCAACTGTTCTGACTAGGAATGACAAGAAGAATCTTTCCTTTTCTCAGAAGGAAAAGAAGAAAAGGGATCTTGGTCAAGCAAGCAGGGGGAAAAATTATGTTGAAGAAGAGAAAAGGCTGTTGAGGGACAATGGAGTTTATTCTGGTTTCGATTCTTGA

Protein sequence

>Msa0028660

MKRTMPWSDDDDDSSSDSENDSETGAKKSKGKSTKQKKAPIDFEALKRYGYKGGPSVLKVPPPKEDDTKKDWSWSSGKEKRVEKEVEETYEERKKTREALSLGEQMPTVLTRNDKKNLSFSQKEKKKRDLGQASRGKNYVEEEKRLLRDNGVYSGFDS*