Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179520 | XP_003609214.1 | 96.725 | 855 | 28 | 0 | 8 | 862 | 3 | 857 | 0.0 | 1731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179520 | sp|Q69VD5|PNH1_ORYSJ | 72.410 | 830 | 228 | 1 | 23 | 851 | 118 | 947 | 0.0 | 1285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029910 | Msa1179520 | 0.817867 | 2.639703e-52 | -8.615850e-47 |
| Msa0084500 | Msa1179520 | 0.806734 | 7.124248e-50 | -8.615850e-47 |
| Msa0742180 | Msa1179520 | 0.819296 | 1.251181e-52 | -8.615850e-47 |
| Msa0823400 | Msa1179520 | 0.829285 | 5.606625e-55 | -8.615850e-47 |
| Msa0169920 | Msa1179520 | 0.802768 | 4.795858e-49 | -8.615850e-47 |
| Msa0176470 | Msa1179520 | 0.811983 | 5.328364e-51 | -8.615850e-47 |
| Msa0191040 | Msa1179520 | 0.800180 | 1.626369e-48 | -8.615850e-47 |
| Msa0206800 | Msa1179520 | 0.813684 | 2.259680e-51 | -8.615850e-47 |
| Msa0373960 | Msa1179520 | 0.841441 | 4.744191e-58 | -8.615850e-47 |
| Msa0423100 | Msa1179520 | 0.834616 | 2.704199e-56 | -8.615850e-47 |
| Msa0469260 | Msa1179520 | 0.854251 | 1.394331e-61 | -8.615850e-47 |
| Msa0999340 | Msa1179520 | 0.810260 | 1.259250e-50 | -8.615850e-47 |
| Msa0999390 | Msa1179520 | 0.817759 | 2.790941e-52 | -8.615850e-47 |
| Msa1073340 | Msa1179520 | 0.800507 | 1.395176e-48 | -8.615850e-47 |
| Msa0277290 | Msa1179520 | 0.817210 | 3.711707e-52 | -8.615850e-47 |
| Msa0288190 | Msa1179520 | 0.816419 | 5.584338e-52 | -8.615850e-47 |
| Msa0288200 | Msa1179520 | 0.805785 | 1.128951e-49 | -8.615850e-47 |
| Msa0326540 | Msa1179520 | 0.802675 | 5.013013e-49 | -8.615850e-47 |
| Msa0331530 | Msa1179520 | 0.810040 | 1.404430e-50 | -8.615850e-47 |
| Msa0331540 | Msa1179520 | 0.818846 | 1.583720e-52 | -8.615850e-47 |
| Msa1113850 | Msa1179520 | 0.801590 | 8.381967e-49 | -8.615850e-47 |
| Msa1179520 | Msa1233560 | 0.809026 | 2.318597e-50 | -8.615850e-47 |
| Msa1179520 | Msa1271260 | 0.816042 | 6.781437e-52 | -8.615850e-47 |
| Msa1179520 | Msa1313970 | 0.802082 | 6.640757e-49 | -8.615850e-47 |
| Msa1179520 | Msa1317170 | 0.803713 | 3.057534e-49 | -8.615850e-47 |
| Msa1179520 | Msa1339440 | 0.801643 | 8.174527e-49 | -8.615850e-47 |
| Msa1179520 | Msa1345420 | 0.827997 | 1.148381e-54 | -8.615850e-47 |
| Msa1179520 | Msa1389050 | 0.801228 | 9.940081e-49 | -8.615850e-47 |
| Msa1179520 | Msa1435480 | 0.848376 | 6.375789e-60 | -8.615850e-47 |
| Msa1179520 | Msa1458910 | 0.836636 | 8.332243e-57 | -8.615850e-47 |
| Msa0520510 | Msa1179520 | 0.805893 | 1.071592e-49 | -8.615850e-47 |
| Msa0591800 | Msa1179520 | 0.818980 | 1.476909e-52 | -8.615850e-47 |
| Msa0862310 | Msa1179520 | 0.805195 | 1.501038e-49 | -8.615850e-47 |
| Msa0941820 | Msa1179520 | 0.815476 | 9.068404e-52 | -8.615850e-47 |
| Msa0965310 | Msa1179520 | 0.809149 | 2.182268e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179520 | MtrunA17_Chr4g0062941 | 96.725 | 855 | 28 | 0 | 8 | 862 | 3 | 857 | 0.0 | 1731 |
| Msa1179520 | MtrunA17_Chr2g0308031 | 77.661 | 855 | 182 | 1 | 6 | 860 | 49 | 894 | 0.0 | 1405 |
| Msa1179520 | MtrunA17_Chr1g0166341 | 69.977 | 856 | 253 | 3 | 3 | 854 | 91 | 946 | 0.0 | 1285 |
| Msa1179520 | MtrunA17_Chr1g0204551 | 69.976 | 836 | 250 | 1 | 20 | 854 | 105 | 940 | 0.0 | 1271 |
| Msa1179520 | MtrunA17_Chr6g0481121 | 65.986 | 832 | 281 | 2 | 23 | 852 | 232 | 1063 | 0.0 | 1189 |
| Msa1179520 | MtrunA17_Chr4g0027691 | 53.064 | 865 | 386 | 10 | 6 | 859 | 94 | 949 | 0.0 | 943 |
| Msa1179520 | MtrunA17_Chr4g0027701 | 51.279 | 860 | 395 | 10 | 12 | 859 | 139 | 986 | 0.0 | 870 |
| Msa1179520 | MtrunA17_Chr5g0418071 | 39.192 | 842 | 454 | 23 | 36 | 845 | 162 | 977 | 1.95e-180 | 546 |
| Msa1179520 | MtrunA17_Chr3g0118281 | 36.088 | 859 | 469 | 23 | 31 | 845 | 131 | 953 | 7.72e-154 | 476 |
| Msa1179520 | MtrunA17_Chr5g0440631 | 34.954 | 864 | 476 | 22 | 31 | 845 | 42 | 868 | 2.75e-149 | 462 |
| Msa1179520 | MtrunA17_Chr3g0121101 | 36.437 | 870 | 466 | 27 | 31 | 847 | 41 | 876 | 1.42e-146 | 455 |
| Msa1179520 | MtrunA17_Chr5g0440641 | 34.296 | 866 | 488 | 26 | 31 | 855 | 42 | 867 | 5.94e-142 | 442 |
| Msa1179520 | MtrunA17_Chr2g0291701 | 34.045 | 843 | 472 | 29 | 42 | 845 | 186 | 983 | 4.07e-139 | 439 |
| Msa1179520 | MtrunA17_Chr6g0467081 | 33.988 | 865 | 478 | 23 | 31 | 845 | 41 | 862 | 9.17e-138 | 432 |
| Msa1179520 | MtrunA17_Chr4g0043461 | 33.256 | 857 | 483 | 29 | 32 | 845 | 117 | 927 | 6.92e-133 | 421 |
| Msa1179520 | MtrunA17_Chr3g0080331 | 34.823 | 649 | 347 | 16 | 189 | 816 | 31 | 624 | 5.53e-112 | 356 |
| Msa1179520 | MtrunA17_Chr6g0464401 | 75.714 | 70 | 17 | 0 | 556 | 625 | 3 | 72 | 3.79e-28 | 110 |
| Msa1179520 | MtrunA17_Chr1g0164751 | 26.510 | 298 | 153 | 10 | 446 | 741 | 45 | 278 | 9.74e-21 | 93.6 |
| Msa1179520 | MtrunA17_Chr3g0133931 | 70.588 | 51 | 15 | 0 | 622 | 672 | 1 | 51 | 2.10e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1179520 | AT5G43810.4 | 70.652 | 828 | 241 | 1 | 29 | 854 | 128 | 955 | 0.0 | 1275 |
| Msa1179520 | AT5G43810.1 | 70.652 | 828 | 241 | 1 | 29 | 854 | 128 | 955 | 0.0 | 1275 |
| Msa1179520 | AT5G43810.2 | 70.652 | 828 | 241 | 1 | 29 | 854 | 128 | 955 | 0.0 | 1275 |
| Msa1179520 | AT5G43810.3 | 70.652 | 828 | 241 | 1 | 29 | 854 | 128 | 955 | 0.0 | 1275 |
| Msa1179520 | AT1G48410.1 | 64.894 | 846 | 295 | 2 | 9 | 852 | 159 | 1004 | 0.0 | 1182 |
| Msa1179520 | AT1G48410.3 | 64.741 | 848 | 295 | 3 | 9 | 852 | 159 | 1006 | 0.0 | 1177 |
| Msa1179520 | AT1G48410.2 | 64.741 | 848 | 295 | 3 | 9 | 852 | 159 | 1006 | 0.0 | 1177 |
| Msa1179520 | AT2G27880.1 | 52.118 | 850 | 392 | 6 | 6 | 850 | 124 | 963 | 0.0 | 919 |
| Msa1179520 | AT1G69440.1 | 37.002 | 854 | 472 | 23 | 26 | 854 | 147 | 959 | 1.41e-169 | 518 |
| Msa1179520 | AT2G27040.1 | 34.722 | 864 | 479 | 23 | 31 | 845 | 58 | 885 | 3.88e-155 | 478 |
| Msa1179520 | AT2G27040.2 | 34.722 | 864 | 479 | 23 | 31 | 845 | 58 | 885 | 3.88e-155 | 478 |
| Msa1179520 | AT5G21150.1 | 34.543 | 854 | 483 | 22 | 25 | 837 | 31 | 849 | 5.18e-149 | 461 |
| Msa1179520 | AT2G32940.1 | 35.443 | 869 | 479 | 23 | 31 | 853 | 28 | 860 | 6.14e-142 | 442 |
| Msa1179520 | AT1G31280.1 | 32.901 | 848 | 509 | 18 | 32 | 855 | 164 | 975 | 6.10e-140 | 441 |
| Msa1179520 | AT5G21030.2 | 33.757 | 865 | 482 | 24 | 25 | 855 | 19 | 826 | 1.10e-132 | 417 |
| Msa1179520 | AT5G21030.1 | 33.757 | 865 | 478 | 25 | 25 | 855 | 19 | 822 | 4.05e-131 | 413 |
| Msa1179520 | AT1G31290.3 | 33.020 | 851 | 503 | 25 | 36 | 855 | 267 | 1081 | 8.90e-129 | 414 |
| Msa1179520 | AT1G31290.2 | 33.020 | 851 | 503 | 25 | 36 | 855 | 305 | 1119 | 2.52e-128 | 414 |
| Msa1179520 | AT1G31290.1 | 33.020 | 851 | 503 | 25 | 36 | 855 | 341 | 1155 | 3.90e-128 | 414 |
Find 178 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTCTTGTGTTTCCTTCT+AGG | 0.165769 | 8_1:-12955609 | Msa1179520:CDS |
| CCTCGTGGCGGTATCGTTTA+TGG | 0.192955 | 8_1:-12951733 | Msa1179520:CDS |
| CAGCTCATTATCATGTTATA+TGG | 0.216806 | 8_1:-12950873 | Msa1179520:CDS |
| AAGGCCTTCTTAACCATATC+TGG | 0.242923 | 8_1:+12952642 | None:intergenic |
| ATATTGTGTAATTCTCTTCA+TGG | 0.268728 | 8_1:-12950303 | Msa1179520:three_prime_UTR |
| TGTACGCGGTCGGTTTCTTT+AGG | 0.270314 | 8_1:-12950696 | Msa1179520:intron |
| TCAATACAGAAAGTTGTAAA+TGG | 0.273268 | 8_1:-12953041 | Msa1179520:intron |
| TGACTTCCAAGTAGAGAAAT+TGG | 0.277634 | 8_1:-12950329 | Msa1179520:three_prime_UTR |
| CCTGCATACTTTGTCACTTC+TGG | 0.298557 | 8_1:+12951820 | None:intergenic |
| GAACCTGATGTCCATGAAAA+TGG | 0.306979 | 8_1:-12950461 | Msa1179520:CDS |
| TTCTACTTTCACACCTCTTA+AGG | 0.307969 | 8_1:+12954137 | None:intergenic |
| ATGGAAGCAAAGTAAGATAT+TGG | 0.308005 | 8_1:-12953022 | Msa1179520:CDS |
| AGGAAGGAACACAGTACTTT+TGG | 0.312691 | 8_1:-12952045 | Msa1179520:CDS |
| TGTGTAGGCTTGTGCATCTT+TGG | 0.316008 | 8_1:-12951393 | Msa1179520:intron |
| GATTACTTTCAAGAAATATA+TGG | 0.322652 | 8_1:-12953907 | Msa1179520:CDS |
| TCTTTCCCAATTCAGTGTTC+TGG | 0.324188 | 8_1:+12955184 | None:intergenic |
| CTCTCATTTCAGAAAGCAAC+TGG | 0.325915 | 8_1:-12951588 | Msa1179520:CDS |
| CACACGTCCTCTCCAGATTC+AGG | 0.328586 | 8_1:+12951951 | None:intergenic |
| AGAAGGAAGTACAGGATAAC+AGG | 0.333439 | 8_1:-12954093 | Msa1179520:CDS |
| GAATGTAAAGTTCAGGAAAC+TGG | 0.333487 | 8_1:-12955673 | Msa1179520:CDS |
| AATCCTTATGCAAAGGAGTT+TGG | 0.339127 | 8_1:-12953353 | Msa1179520:CDS |
| TTCTCTGCACCGTCATAAAC+AGG | 0.339368 | 8_1:+12955156 | None:intergenic |
| TAGGCCTGGCTATGGCAAAC+TGG | 0.343056 | 8_1:-12955590 | Msa1179520:CDS |
| GCTGAATATACAGGAATAAC+TGG | 0.343621 | 8_1:+12952669 | None:intergenic |
| ATATTTAGCTATGTATCATT+TGG | 0.349934 | 8_1:-12954743 | Msa1179520:intron |
| GCTTCACCAGAACACTGAAT+TGG | 0.353562 | 8_1:-12955190 | Msa1179520:CDS |
| CTAAATTACTTACATGGTAA+TGG | 0.354064 | 8_1:+12955506 | None:intergenic |
| GCTTGTGCATCTTTGGAGTC+TGG | 0.360251 | 8_1:-12951386 | Msa1179520:CDS |
| TCCTCCGAATAGTTTCCCTT+TGG | 0.360809 | 8_1:-12953959 | Msa1179520:intron |
| GTGTAGTCATGCTGGAGTTC+AGG | 0.362115 | 8_1:-12950982 | Msa1179520:intron |
| CCTCCGAATAGTTTCCCTTT+GGG | 0.373013 | 8_1:-12953958 | Msa1179520:intron |
| AAGGGAGAATGATATTCTTC+AGG | 0.381681 | 8_1:-12953627 | Msa1179520:intron |
| GACAACAATGGCTCTCTCTA+TGG | 0.382157 | 8_1:-12952546 | Msa1179520:intron |
| TGTCACTTCTGGCCAGTCTT+GGG | 0.382340 | 8_1:+12951831 | None:intergenic |
| TTGCCATAGCCAGGCCTAGA+AGG | 0.385386 | 8_1:+12955595 | None:intergenic |
| GATGTATCTCATCCTGAATC+TGG | 0.385842 | 8_1:-12951963 | Msa1179520:CDS |
| CCATACCTGAGTTCCCTTGT+AGG | 0.391242 | 8_1:+12954057 | None:intergenic |
| TGCCATTGACATTGTATTGA+AGG | 0.391330 | 8_1:-12954848 | Msa1179520:CDS |
| TATTTAGCTATGTATCATTT+GGG | 0.398059 | 8_1:-12954742 | Msa1179520:intron |
| TTGTCACTTCTGGCCAGTCT+TGG | 0.399441 | 8_1:+12951830 | None:intergenic |
| GAAGGAAGAATGTAAAGTTC+AGG | 0.407586 | 8_1:-12955680 | Msa1179520:CDS |
| TTCACCTTCTCTTTCAGAGC+TGG | 0.413232 | 8_1:+12950392 | None:intergenic |
| TCGTTTATGGTGGCATGATC+AGG | 0.415509 | 8_1:-12951720 | Msa1179520:intron |
| TAGTTGAAATATCACGAAAC+TGG | 0.415913 | 8_1:-12953184 | Msa1179520:CDS |
| CAGATTAAGAAAACCTTAAG+AGG | 0.416503 | 8_1:-12954150 | Msa1179520:CDS |
| AAAAGAATGTACATACTTCA+AGG | 0.419166 | 8_1:+12952623 | None:intergenic |
| CTTCACCAGAACACTGAATT+GGG | 0.421113 | 8_1:-12955189 | Msa1179520:CDS |
| AAAGTAGAAGTTACATATAG+AGG | 0.422800 | 8_1:-12954123 | Msa1179520:CDS |
| TTGAACTCTTTGTGTGCAAA+AGG | 0.426405 | 8_1:+12955111 | None:intergenic |
| ATGCCAAACTCCTTTGCATA+AGG | 0.426436 | 8_1:+12953350 | None:intergenic |
| GTTCCCAGTTTGCCATAGCC+AGG | 0.430105 | 8_1:+12955586 | None:intergenic |
| GTTCAGACTTGCCAAAGTTT+AGG | 0.431252 | 8_1:-12952936 | Msa1179520:CDS |
| GTAGCACAAGTTATTAGTTA+AGG | 0.434061 | 8_1:+12950816 | None:intergenic |
| TATGAACCAATTTCTCTACT+TGG | 0.434678 | 8_1:+12950323 | None:intergenic |
| GCCATTGTTGTCTGGAAGAA+TGG | 0.437420 | 8_1:+12952557 | None:intergenic |
| TGGAAGCAAAGTAAGATATT+GGG | 0.437551 | 8_1:-12953021 | Msa1179520:CDS |
| ACTTTACCATGCCTAAACTT+TGG | 0.437956 | 8_1:+12952925 | None:intergenic |
| AACTGGACTTGAATCTCAAC+TGG | 0.438162 | 8_1:-12955656 | Msa1179520:CDS |
| TCTGGCTTTGCTGAATATAC+AGG | 0.438648 | 8_1:+12952660 | None:intergenic |
| CTTGTGTTTCCTTCTAGGCC+TGG | 0.439734 | 8_1:-12955604 | Msa1179520:CDS |
| CTAGGGTTCTTCCTGCTCCA+TGG | 0.441218 | 8_1:-12953295 | Msa1179520:CDS |
| GCGGTTTCTATCAAAGTATA+AGG | 0.442788 | 8_1:-12954655 | Msa1179520:CDS |
| TCCTGCGTACTATGCTCATC+TGG | 0.445502 | 8_1:-12950510 | Msa1179520:CDS |
| TAGAGAGAGCCATTGTTGTC+TGG | 0.450644 | 8_1:+12952549 | None:intergenic |
| AAGCCACCAGTCAGCTTATG+TGG | 0.452955 | 8_1:+12954689 | None:intergenic |
| TTCTCTTTCAGAGCTGGTAG+TGG | 0.463182 | 8_1:+12950398 | None:intergenic |
| TGGAGTCTGGTTACCAACCT+CGG | 0.464355 | 8_1:-12951373 | Msa1179520:CDS |
| TGACTGGTGGCTTGGAATCA+TGG | 0.466870 | 8_1:-12954679 | Msa1179520:CDS |
| GTCACTAACCAATGGAATCC+TGG | 0.473116 | 8_1:+12952010 | None:intergenic |
| ACATAAGCTGACTGGTGGCT+TGG | 0.473238 | 8_1:-12954687 | Msa1179520:CDS |
| AGGTTGTAGCCTCCCAAGAC+TGG | 0.474036 | 8_1:-12951843 | Msa1179520:CDS |
| AGCTCATTATCATGTTATAT+GGG | 0.476160 | 8_1:-12950872 | Msa1179520:CDS |
| GTTCAATATACTATTGATTG+AGG | 0.476462 | 8_1:-12955094 | Msa1179520:CDS |
| TAGGGTTCTTCCTGCTCCAT+GGG | 0.479460 | 8_1:-12953294 | Msa1179520:intron |
| CTCCTTCAATACAATGTCAA+TGG | 0.479656 | 8_1:+12954846 | None:intergenic |
| ATATTCAGCAAAGCCAGATA+TGG | 0.480262 | 8_1:-12952655 | Msa1179520:CDS |
| TGGGAGCTTACACTATTCTC+CGG | 0.485491 | 8_1:-12954723 | Msa1179520:CDS |
| AAAATCTGTGAAACAGATCT+CGG | 0.488388 | 8_1:-12952306 | Msa1179520:CDS |
| ATTGAGGATGATGAGGGTAT+TGG | 0.489538 | 8_1:-12955078 | Msa1179520:CDS |
| AAGTATAAGGCCTACTCAGA+TGG | 0.495306 | 8_1:-12954642 | Msa1179520:CDS |
| GGAGTCTGGTTACCAACCTC+GGG | 0.495546 | 8_1:-12951372 | Msa1179520:CDS |
| CTAGCTAGTAGTACAAATGA+AGG | 0.495685 | 8_1:-12955698 | Msa1179520:exon |
| TTTCCTTCTAGGCCTGGCTA+TGG | 0.497873 | 8_1:-12955598 | Msa1179520:CDS |
| AGAAACAGCATGGACAGAAG+TGG | 0.499317 | 8_1:-12951287 | Msa1179520:CDS |
| GCAGAGAATCTTTACACTGC+CGG | 0.506829 | 8_1:-12955141 | Msa1179520:CDS |
| AAATCTGTGAAACAGATCTC+GGG | 0.508964 | 8_1:-12952305 | Msa1179520:CDS |
| TGACTTCCTTCTTGAAGGCA+AGG | 0.510357 | 8_1:+12953859 | None:intergenic |
| ATGTCAGCGACCACGCGAAA+GGG | 0.512480 | 8_1:-12953645 | Msa1179520:CDS |
| AGTGACAAAGTATGCAGGAT+TGG | 0.513079 | 8_1:-12951815 | Msa1179520:CDS |
| ATGCTTACGGCAGCAATGGA+TGG | 0.514531 | 8_1:+12951927 | None:intergenic |
| AGGCCTGGCTATGGCAAACT+GGG | 0.516262 | 8_1:-12955589 | Msa1179520:CDS |
| TACTAGGCATGCAAGATAGT+TGG | 0.516318 | 8_1:-12953728 | Msa1179520:intron |
| GTGTGCAAAAGGAAGCGAAC+CGG | 0.517471 | 8_1:+12955122 | None:intergenic |
| GAAGGTGAACTATTTGCCTA+TGG | 0.517622 | 8_1:-12953833 | Msa1179520:CDS |
| GGCAAGTCTGAACTAACTGT+TGG | 0.518989 | 8_1:+12952946 | None:intergenic |
| TATAAGTTCCAGGATTCCAT+TGG | 0.526278 | 8_1:-12952018 | Msa1179520:CDS |
| TGGGCTGCAATGTCAATCAC+AGG | 0.527131 | 8_1:+12954342 | None:intergenic |
| ACTTGCATCAGTTGAGGCTA+GGG | 0.528563 | 8_1:-12953312 | Msa1179520:CDS |
| TTCTACTTGTGTAGTCATGC+TGG | 0.530241 | 8_1:-12950990 | Msa1179520:CDS |
| CACTTCTGGCCAGTCTTGGG+AGG | 0.530386 | 8_1:+12951834 | None:intergenic |
| ATGCGATCTGCGTCTGACAA+TGG | 0.530750 | 8_1:+12954291 | None:intergenic |
| GGAAATGCTTACGGCAGCAA+TGG | 0.531179 | 8_1:+12951923 | None:intergenic |
| AACTTGCATCAGTTGAGGCT+AGG | 0.533213 | 8_1:-12953313 | Msa1179520:CDS |
| CATTTACCTTGCCTTCAAGA+AGG | 0.538754 | 8_1:-12953865 | Msa1179520:CDS |
| AAAGCCAGATATGGTTAAGA+AGG | 0.539185 | 8_1:-12952646 | Msa1179520:CDS |
| CTGTAAAATATTATCCTGCA+TGG | 0.540674 | 8_1:+12951558 | None:intergenic |
| GATTATCATCACAGCCTACA+AGG | 0.544505 | 8_1:-12954071 | Msa1179520:CDS |
| ATGGGATTATCACTTAATGT+TGG | 0.545614 | 8_1:-12954623 | Msa1179520:intron |
| GGTGGACAGAGATATACAAA+AGG | 0.546010 | 8_1:-12953707 | Msa1179520:CDS |
| TGAAGGAGCTTGCATCTCAT+AGG | 0.549448 | 8_1:-12954831 | Msa1179520:intron |
| GACTTGCCAAAGTTTAGGCA+TGG | 0.549554 | 8_1:-12952931 | Msa1179520:intron |
| AGTATAAGGCCTACTCAGAT+GGG | 0.552559 | 8_1:-12954641 | Msa1179520:CDS |
| TTACAGAGCGCGATTCTACA+TGG | 0.555729 | 8_1:-12950483 | Msa1179520:CDS |
| CGAGCTCGTATAGCAAAACC+TGG | 0.557319 | 8_1:+12951508 | None:intergenic |
| TCTTGAAGGCAAGGTAAATG+AGG | 0.558250 | 8_1:+12953868 | None:intergenic |
| CTATTGATTGAGGATGATGA+GGG | 0.558531 | 8_1:-12955084 | Msa1179520:CDS |
| CATGTCAGCGACCACGCGAA+AGG | 0.560632 | 8_1:-12953646 | Msa1179520:CDS |
| CATATAACATGATAATGAGC+TGG | 0.561733 | 8_1:+12950874 | None:intergenic |
| TCTTCCAGACATGGCATCCA+CGG | 0.563043 | 8_1:-12954382 | Msa1179520:intron |
| ACCTCGGGTTACATTTGTCG+TGG | 0.563441 | 8_1:-12951357 | Msa1179520:CDS |
| ACTATTGATTGAGGATGATG+AGG | 0.565824 | 8_1:-12955085 | Msa1179520:CDS |
| AAGGAGTTTGGCATCAGCAT+CGG | 0.568221 | 8_1:-12953341 | Msa1179520:CDS |
| CACAGCCTACAAGGGAACTC+AGG | 0.568786 | 8_1:-12954062 | Msa1179520:intron |
| TACAGGGACGGGGTAAGTGA+AGG | 0.576135 | 8_1:-12951540 | Msa1179520:CDS |
| TCTTTAATAATTTCCTCTCG+AGG | 0.576602 | 8_1:+12951778 | None:intergenic |
| ATGTTCCATTGTCCAACTTG+AGG | 0.580505 | 8_1:+12953142 | None:intergenic |
| TCAAGAAGGAAGTCAAAAGA+AGG | 0.581675 | 8_1:-12953851 | Msa1179520:CDS |
| CCAGAAGTGACAAAGTATGC+AGG | 0.584429 | 8_1:-12951820 | Msa1179520:CDS |
| TAGGCATGCAAGATAGTTGG+TGG | 0.586024 | 8_1:-12953725 | Msa1179520:CDS |
| GCAATGTCAATCACAGGGAG+CGG | 0.592439 | 8_1:+12954348 | None:intergenic |
| AGTGATAATCCCATCTGAGT+AGG | 0.593037 | 8_1:+12954632 | None:intergenic |
| TCTTGCCTCAAGTTGGACAA+TGG | 0.594593 | 8_1:-12953147 | Msa1179520:CDS |
| GAAACAGCATGGACAGAAGT+GGG | 0.595026 | 8_1:-12951286 | Msa1179520:CDS |
| TTCATAACAGGAATTTAGTG+AGG | 0.596609 | 8_1:-12952694 | Msa1179520:intron |
| ATGGCATTGATAGCTTCTTG+TGG | 0.602364 | 8_1:+12954865 | None:intergenic |
| CGAGCTCGATGCCATCCGTA+AGG | 0.602432 | 8_1:-12951493 | Msa1179520:intron |
| GCCAGATGAGCATAGTACGC+AGG | 0.607023 | 8_1:+12950509 | None:intergenic |
| TGATTGTAATCCTTATGCAA+AGG | 0.610786 | 8_1:-12953360 | Msa1179520:CDS |
| AAGTGAAGGACAGTTCTACC+AGG | 0.611053 | 8_1:-12951526 | Msa1179520:CDS |
| AAGAAGCTCCCTGTTTATGA+CGG | 0.612890 | 8_1:-12955165 | Msa1179520:CDS |
| GTGGACAGAGATATACAAAA+GGG | 0.613648 | 8_1:-12953706 | Msa1179520:CDS |
| AAGTAGAAGTCGAACTCAGT+AGG | 0.614030 | 8_1:+12951005 | None:intergenic |
| CAACGAACTTGCATCAGTTG+AGG | 0.615714 | 8_1:-12953318 | Msa1179520:CDS |
| GTCAGACGCAGATCGCATCA+AGG | 0.615950 | 8_1:-12954286 | Msa1179520:intron |
| AGAAGTGGGAATATCTTACC+AGG | 0.617832 | 8_1:-12951272 | Msa1179520:intron |
| AGTTAAGGACTGAATCTCAT+CGG | 0.618024 | 8_1:+12950831 | None:intergenic |
| ATGTGGAAGTACCTTACGGA+TGG | 0.619714 | 8_1:+12951482 | None:intergenic |
| GCCATTCTTCCAGACAACAA+TGG | 0.620282 | 8_1:-12952558 | Msa1179520:CDS |
| ATGAGGGTATTGGTACTACA+AGG | 0.622776 | 8_1:-12955068 | Msa1179520:intron |
| ATGTGCTCAGCCTCCTCGAG+AGG | 0.626615 | 8_1:-12951791 | Msa1179520:CDS |
| GGTGAACTATTTGCCTATGG+AGG | 0.626727 | 8_1:-12953830 | Msa1179520:intron |
| GTAGGAATGTCACTAACCAA+TGG | 0.627296 | 8_1:+12952002 | None:intergenic |
| CGACAAATGTAACCCGAGGT+TGG | 0.633031 | 8_1:+12951360 | None:intergenic |
| TTAATAATTTCCTCTCGAGG+AGG | 0.637362 | 8_1:+12951781 | None:intergenic |
| AGCACTAAAGATCAATGTCA+AGG | 0.638580 | 8_1:-12952217 | Msa1179520:intron |
| ATATCATTCTCCCTTTCGCG+TGG | 0.640661 | 8_1:+12953635 | None:intergenic |
| CAGATACTGAAATATCTGCA+AGG | 0.641958 | 8_1:+12955536 | None:intergenic |
| ATCTCATCCTGAATCTGGAG+AGG | 0.643513 | 8_1:-12951958 | Msa1179520:CDS |
| TCACAACGACAGAAACAGCA+TGG | 0.651192 | 8_1:-12951297 | Msa1179520:CDS |
| CGTGGCGGTATCGTTTATGG+TGG | 0.655251 | 8_1:-12951730 | Msa1179520:CDS |
| TCTCTGCACCGTCATAAACA+GGG | 0.655866 | 8_1:+12955157 | None:intergenic |
| ACTACCAGCTCTGAAAGAGA+AGG | 0.656140 | 8_1:-12950396 | Msa1179520:three_prime_UTR |
| GGTGGCTTGGAATCATGGAG+CGG | 0.657457 | 8_1:-12954674 | Msa1179520:CDS |
| CAGTTACATGAGCTTCTCAG+TGG | 0.664868 | 8_1:-12954904 | Msa1179520:CDS |
| AAACCACATAAGCTGACTGG+TGG | 0.665974 | 8_1:-12954692 | Msa1179520:CDS |
| ATTATCATCACAGCCTACAA+GGG | 0.667255 | 8_1:-12954070 | Msa1179520:CDS |
| TGTTGGAACGATCCTCGTGG+CGG | 0.671993 | 8_1:-12951745 | Msa1179520:CDS |
| GGGCTGCAATGTCAATCACA+GGG | 0.674365 | 8_1:+12954343 | None:intergenic |
| AGATGAGCATAGTACGCAGG+AGG | 0.679419 | 8_1:+12950512 | None:intergenic |
| GGTTAATGTAGGAACTGTGG+TGG | 0.687212 | 8_1:-12951045 | Msa1179520:intron |
| ATATGCAAGATGTACGCGGT+CGG | 0.693744 | 8_1:-12950706 | Msa1179520:CDS |
| AAATGTTGGAACGATCCTCG+TGG | 0.702767 | 8_1:-12951748 | Msa1179520:CDS |
| ATTGGTTAATGTAGGAACTG+TGG | 0.705694 | 8_1:-12951048 | Msa1179520:intron |
| ACAATGGAACATGACGAACA+AGG | 0.706750 | 8_1:-12953131 | Msa1179520:intron |
| ACCACGACAAATGTAACCCG+AGG | 0.714263 | 8_1:+12951356 | None:intergenic |
| ACAGATATGCAAGATGTACG+CGG | 0.728299 | 8_1:-12950710 | Msa1179520:intron |
| CCATAAACGATACCGCCACG+AGG | 0.745991 | 8_1:+12951733 | None:intergenic |
| GAGCGGTTCTATAAACACCG+TGG | 0.759733 | 8_1:+12954365 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATTCAATTTTTTTAAG+TGG | - | chr8_1:12950464-12950483 | Msa1179520:CDS | 15.0% |
| !!! | GTAAATTTTCTTTAAACTTT+TGG | - | chr8_1:12950923-12950942 | Msa1179520:intron | 15.0% |
| !! | ATTAAAAAAAGATGAAGATA+TGG | + | chr8_1:12951355-12951374 | None:intergenic | 15.0% |
| !!! | ATATCTTCATCTTTTTTTAA+TGG | - | chr8_1:12951354-12951373 | Msa1179520:CDS | 15.0% |
| !!! | TATCTTCATCTTTTTTTAAT+GGG | - | chr8_1:12951355-12951374 | Msa1179520:CDS | 15.0% |
| !! | TTTATATATAACCATGTTAT+AGG | - | chr8_1:12953070-12953089 | Msa1179520:intron | 15.0% |
| !! | AATTGAAAAAAAAAATGATG+TGG | + | chr8_1:12953139-12953158 | None:intergenic | 15.0% |
| !!! | AAATGCAATATAATTTTAGA+TGG | - | chr8_1:12953872-12953891 | Msa1179520:CDS | 15.0% |
| !!! | AATGCAATATAATTTTAGAT+GGG | - | chr8_1:12953873-12953892 | Msa1179520:CDS | 15.0% |
| !!! | TTTTCATTAATTGAATTTTC+AGG | - | chr8_1:12955033-12955052 | Msa1179520:intron | 15.0% |
| !!! | TTTCATTAATTGAATTTTCA+GGG | - | chr8_1:12955034-12955053 | Msa1179520:intron | 15.0% |
| !!! | TTGTTTCTAAATTACTTACA+TGG | + | chr8_1:12950444-12950463 | None:intergenic | 20.0% |
| !!! | TTATCATGTATGTTTTTTGA+AGG | - | chr8_1:12950664-12950683 | Msa1179520:intron | 20.0% |
| !! | ATAGCTAAATATGCAAATTA+AGG | + | chr8_1:12951190-12951209 | None:intergenic | 20.0% |
| !! | ATATTTAGCTATGTATCATT+TGG | - | chr8_1:12951198-12951217 | Msa1179520:intron | 20.0% |
| !! | TATTTAGCTATGTATCATTT+GGG | - | chr8_1:12951199-12951218 | Msa1179520:intron | 20.0% |
| !!! | TTATGTGGTTTTTTTAAATC+CGG | + | chr8_1:12951240-12951259 | None:intergenic | 20.0% |
| !!! | GTAAGAAATTCATATTTCTA+TGG | - | chr8_1:12951677-12951696 | Msa1179520:intron | 20.0% |
| !!! | TAGAATTCTTTGTTTTTAGT+TGG | - | chr8_1:12951704-12951723 | Msa1179520:intron | 20.0% |
| !! | GATTACTTTCAAGAAATATA+TGG | - | chr8_1:12952034-12952053 | Msa1179520:CDS | 20.0% |
| !!! | TAGCATTAATTTTAGAAAAC+AGG | - | chr8_1:12952403-12952422 | Msa1179520:intron | 20.0% |
| !!! | AAGAAACAAATTTTTCTTTC+AGG | - | chr8_1:12953602-12953621 | Msa1179520:intron | 20.0% |
| !! | AATGAAGATTAAGTGAAAAA+TGG | + | chr8_1:12953843-12953862 | None:intergenic | 20.0% |
| !!! | TTAAAGATCTTTTCAAATGT+TGG | - | chr8_1:12954179-12954198 | Msa1179520:intron | 20.0% |
| !! | TAACTGTTTCAAATATTATG+TGG | + | chr8_1:12954479-12954498 | None:intergenic | 20.0% |
| !! | TCATAAATATGCAATAATGA+TGG | + | chr8_1:12954724-12954743 | None:intergenic | 20.0% |
| ! | CTAAATTACTTACATGGTAA+TGG | + | chr8_1:12950438-12950457 | None:intergenic | 25.0% |
| !! | GTTCAATATACTATTGATTG+AGG | - | chr8_1:12950847-12950866 | Msa1179520:CDS | 25.0% |
| ! | GTCAGAAACAATAATATGAT+AGG | + | chr8_1:12951166-12951185 | None:intergenic | 25.0% |
| ! | TCAATTAAAGACGAATTGTT+CGG | + | chr8_1:12951470-12951489 | None:intergenic | 25.0% |
| ! | ATTGAAATTCATTAACCACT+TGG | - | chr8_1:12951485-12951504 | Msa1179520:intron | 25.0% |
| !! | CACATCTTTTCCTAAAATTT+GGG | + | chr8_1:12951621-12951640 | None:intergenic | 25.0% |
| ! | AAAGTAGAAGTTACATATAG+AGG | - | chr8_1:12951818-12951837 | Msa1179520:CDS | 25.0% |
| ! | AAGTTGTGAATTTAACACAT+TGG | - | chr8_1:12951931-12951950 | Msa1179520:intron | 25.0% |
| ! | GTATTTATCACACATATCAT+AGG | + | chr8_1:12952522-12952541 | None:intergenic | 25.0% |
| ! | ACAATATGAAAAATTACCCA+TGG | + | chr8_1:12952666-12952685 | None:intergenic | 25.0% |
| ! | TCAATACAGAAAGTTGTAAA+TGG | - | chr8_1:12952900-12952919 | Msa1179520:intron | 25.0% |
| ! | AAAAGAATGTACATACTTCA+AGG | + | chr8_1:12953321-12953340 | None:intergenic | 25.0% |
| !! | TTTTTCTCTAAACAAACTTG+AGG | - | chr8_1:12953337-12953356 | Msa1179520:CDS | 25.0% |
| !! | TTTTCTCTAAACAAACTTGA+GGG | - | chr8_1:12953338-12953357 | Msa1179520:CDS | 25.0% |
| !!! | TCAAGTGTCATTTTCTTATA+CGG | + | chr8_1:12953469-12953488 | None:intergenic | 25.0% |
| !! | ATATTTTGTAAGACAGCATT+GGG | + | chr8_1:12953669-12953688 | None:intergenic | 25.0% |
| !! | GACATTCCTACAATAATTTT+TGG | - | chr8_1:12953951-12953970 | Msa1179520:intron | 25.0% |
| !! | ATGCAGGATAATATTTTACA+GGG | - | chr8_1:12954385-12954404 | Msa1179520:intron | 25.0% |
| ! | TAATCGAAATTTAAGCACTA+AGG | + | chr8_1:12954528-12954547 | None:intergenic | 25.0% |
| ! | CTTAAATTTCGATTATGTGT+AGG | - | chr8_1:12954533-12954552 | Msa1179520:intron | 25.0% |
| ! | AGCAATGTAATTATTATTGC+TGG | - | chr8_1:12954854-12954873 | Msa1179520:CDS | 25.0% |
| ! | AGCTCATTATCATGTTATAT+GGG | - | chr8_1:12955069-12955088 | Msa1179520:CDS | 25.0% |
| ! | TTTCATCATAATAATAGTGC+AGG | + | chr8_1:12955186-12955205 | None:intergenic | 25.0% |
| ! | CTTATAGAAATTGCTCAAAA+AGG | - | chr8_1:12955273-12955292 | Msa1179520:intron | 25.0% |
| ! | ATCAACAGAAAATATCTACA+AGG | - | chr8_1:12955307-12955326 | Msa1179520:intron | 25.0% |
| ! | TCAACAGAAAATATCTACAA+GGG | - | chr8_1:12955308-12955327 | Msa1179520:intron | 25.0% |
| !! | TAATGTTTTACTGTTGAATG+AGG | - | chr8_1:12955577-12955596 | Msa1179520:CDS | 25.0% |
| ! | ATATTGTGTAATTCTCTTCA+TGG | - | chr8_1:12955638-12955657 | Msa1179520:CDS | 25.0% |
| ! | GTTTTACTAGAGATAACTTC+AGG | + | chr8_1:12950701-12950720 | None:intergenic | 30.0% |
| AGTTGTAAATTTGTGTGTTC+AGG | - | chr8_1:12950963-12950982 | Msa1179520:intron | 30.0% | |
| GTTGTAAATTTGTGTGTTCA+GGG | - | chr8_1:12950964-12950983 | Msa1179520:intron | 30.0% | |
| ATGGGATTATCACTTAATGT+TGG | - | chr8_1:12951318-12951337 | Msa1179520:CDS | 30.0% | |
| ! | GGCTTTAATAATCCAAAGTT+CGG | - | chr8_1:12951413-12951432 | Msa1179520:intron | 30.0% |
| GTTGCTTAGACTTTACTTAT+CGG | + | chr8_1:12951439-12951458 | None:intergenic | 30.0% | |
| CAATTAAAGACGAATTGTTC+GGG | + | chr8_1:12951469-12951488 | None:intergenic | 30.0% | |
| AAGATATGCATCTTGTGTTA+AGG | + | chr8_1:12951516-12951535 | None:intergenic | 30.0% | |
| TAACACAAGATGCATATCTT+AGG | - | chr8_1:12951516-12951535 | Msa1179520:CDS | 30.0% | |
| !!! | TTTTTTTGTTCTTCCAGACA+TGG | - | chr8_1:12951550-12951569 | Msa1179520:CDS | 30.0% |
| ! | GCACATCTTTTCCTAAAATT+TGG | + | chr8_1:12951622-12951641 | None:intergenic | 30.0% |
| ATGATACCACAAAGATTTCT+TGG | + | chr8_1:12951766-12951785 | None:intergenic | 30.0% | |
| CAGATTAAGAAAACCTTAAG+AGG | - | chr8_1:12951791-12951810 | Msa1179520:CDS | 30.0% | |
| !!! | CATATAGAGGAAGTTTTAGA+AGG | - | chr8_1:12951831-12951850 | Msa1179520:CDS | 30.0% |
| TTTAACACATTGGACATTTG+AGG | - | chr8_1:12951941-12951960 | Msa1179520:CDS | 30.0% | |
| ACTTATGTGAATCTTGTACT+AGG | - | chr8_1:12952197-12952216 | Msa1179520:intron | 30.0% | |
| TGATTGTAATCCTTATGCAA+AGG | - | chr8_1:12952581-12952600 | Msa1179520:CDS | 30.0% | |
| TAGTTGAAATATCACGAAAC+TGG | - | chr8_1:12952757-12952776 | Msa1179520:intron | 30.0% | |
| AAAAAAATCTTGCCTCAAGT+TGG | - | chr8_1:12952787-12952806 | Msa1179520:intron | 30.0% | |
| ATGGAAGCAAAGTAAGATAT+TGG | - | chr8_1:12952919-12952938 | Msa1179520:intron | 30.0% | |
| TGGAAGCAAAGTAAGATATT+GGG | - | chr8_1:12952920-12952939 | Msa1179520:intron | 30.0% | |
| !!! | CATGGTAAAGTTTCAAGTTT+TGG | - | chr8_1:12953028-12953047 | Msa1179520:CDS | 30.0% |
| CAAACAAATAGCAAGGAAAA+CGG | + | chr8_1:12953107-12953126 | None:intergenic | 30.0% | |
| ! | ACCTTTTATCCTTTCATAAC+AGG | - | chr8_1:12953235-12953254 | Msa1179520:intron | 30.0% |
| TCCTGTTATGAAAGGATAAA+AGG | + | chr8_1:12953239-12953258 | None:intergenic | 30.0% | |
| CACTAAATTCCTGTTATGAA+AGG | + | chr8_1:12953247-12953266 | None:intergenic | 30.0% | |
| TTCATAACAGGAATTTAGTG+AGG | - | chr8_1:12953247-12953266 | Msa1179520:intron | 30.0% | |
| ! | TGTTTTCTTGTAAACATGAG+TGG | + | chr8_1:12953552-12953571 | None:intergenic | 30.0% |
| !! | CATGTTCTGAATTTTGTACT+TGG | - | chr8_1:12953575-12953594 | Msa1179520:intron | 30.0% |
| AAAATCTGTGAAACAGATCT+CGG | - | chr8_1:12953635-12953654 | Msa1179520:CDS | 30.0% | |
| ! | CATATTTTGTAAGACAGCAT+TGG | + | chr8_1:12953670-12953689 | None:intergenic | 30.0% |
| !! | TTTTAAGTAGCAAGAAACCA+AGG | + | chr8_1:12953802-12953821 | None:intergenic | 30.0% |
| ! | GCAATATAATTTTAGATGGG+AGG | - | chr8_1:12953876-12953895 | Msa1179520:CDS | 30.0% |
| ! | TATAATTTTAGATGGGAGGA+AGG | - | chr8_1:12953880-12953899 | Msa1179520:CDS | 30.0% |
| TCAGCTCCAAAAATTATTGT+AGG | + | chr8_1:12953960-12953979 | None:intergenic | 30.0% | |
| TCTTTAATAATTTCCTCTCG+AGG | + | chr8_1:12954166-12954185 | None:intergenic | 30.0% | |
| CTGTAAAATATTATCCTGCA+TGG | + | chr8_1:12954386-12954405 | None:intergenic | 30.0% | |
| ! | CATGCAGGATAATATTTTAC+AGG | - | chr8_1:12954384-12954403 | Msa1179520:intron | 30.0% |
| ! | AGGATAATATTTTACAGGGA+CGG | - | chr8_1:12954389-12954408 | Msa1179520:intron | 30.0% |
| !! | TATTATGTGGAAGTACCTTA+CGG | + | chr8_1:12954466-12954485 | None:intergenic | 30.0% |
| ! | AAGTTTAAAGGCTTTTTACC+TGG | + | chr8_1:12954690-12954709 | None:intergenic | 30.0% |
| GCAAGTAGTAGAAAGTTTAA+AGG | + | chr8_1:12954702-12954721 | None:intergenic | 30.0% | |
| GACGCTTATTTACATTATCT+TGG | + | chr8_1:12954760-12954779 | None:intergenic | 30.0% | |
| GATCAGAATTGCAGAATATT+TGG | - | chr8_1:12954808-12954827 | Msa1179520:intron | 30.0% | |
| ACATTGCTTAGAGAAGTAAT+TGG | + | chr8_1:12954842-12954861 | None:intergenic | 30.0% | |
| ! | CATATAACATGATAATGAGC+TGG | + | chr8_1:12955070-12955089 | None:intergenic | 30.0% |
| CAGCTCATTATCATGTTATA+TGG | - | chr8_1:12955068-12955087 | Msa1179520:intron | 30.0% | |
| GTAGCACAAGTTATTAGTTA+AGG | + | chr8_1:12955128-12955147 | None:intergenic | 30.0% | |
| ATATCTGTCATCAAAACATG+AGG | + | chr8_1:12955219-12955238 | None:intergenic | 30.0% | |
| TATGAACCAATTTCTCTACT+TGG | + | chr8_1:12955621-12955640 | None:intergenic | 30.0% | |
| !!! | GAGTCTAAGTTTTGTTTCTT+AGG | - | chr8_1:12955673-12955692 | Msa1179520:CDS | 30.0% |
| CTAGCTAGTAGTACAAATGA+AGG | - | chr8_1:12950243-12950262 | Msa1179520:three_prime_UTR | 35.0% | |
| GAAGGAAGAATGTAAAGTTC+AGG | - | chr8_1:12950261-12950280 | Msa1179520:three_prime_UTR | 35.0% | |
| GAATGTAAAGTTCAGGAAAC+TGG | - | chr8_1:12950268-12950287 | Msa1179520:three_prime_UTR | 35.0% | |
| ! | AAACACAAGACTTTTGCAAG+AGG | + | chr8_1:12950326-12950345 | None:intergenic | 35.0% |
| ! | AAAGTCTTGTGTTTCCTTCT+AGG | - | chr8_1:12950332-12950351 | Msa1179520:three_prime_UTR | 35.0% |
| CAGATACTGAAATATCTGCA+AGG | + | chr8_1:12950408-12950427 | None:intergenic | 35.0% | |
| ATCGCAATTTCAACAGTCAA+AGG | + | chr8_1:12950525-12950544 | None:intergenic | 35.0% | |
| TTGAACTCTTTGTGTGCAAA+AGG | + | chr8_1:12950833-12950852 | None:intergenic | 35.0% | |
| ! | ACTATTGATTGAGGATGATG+AGG | - | chr8_1:12950856-12950875 | Msa1179520:CDS | 35.0% |
| ! | CTATTGATTGAGGATGATGA+GGG | - | chr8_1:12950857-12950876 | Msa1179520:CDS | 35.0% |
| TGCCATTGACATTGTATTGA+AGG | - | chr8_1:12951093-12951112 | Msa1179520:intron | 35.0% | |
| CTCCTTCAATACAATGTCAA+TGG | + | chr8_1:12951098-12951117 | None:intergenic | 35.0% | |
| AAAAAACCACATAAGCTGAC+TGG | - | chr8_1:12951246-12951265 | Msa1179520:intron | 35.0% | |
| GCGGTTTCTATCAAAGTATA+AGG | - | chr8_1:12951286-12951305 | Msa1179520:CDS | 35.0% | |
| ! | CAGATAGTGTGCTTAACTTT+TGG | + | chr8_1:12951742-12951761 | None:intergenic | 35.0% |
| ATCTGACCAAGAAATCTTTG+TGG | - | chr8_1:12951757-12951776 | Msa1179520:CDS | 35.0% | |
| TTCTACTTTCACACCTCTTA+AGG | + | chr8_1:12951807-12951826 | None:intergenic | 35.0% | |
| !!! | GAAGTTTTAGAAGGAAGTAC+AGG | - | chr8_1:12951840-12951859 | Msa1179520:CDS | 35.0% |
| ATTATCATCACAGCCTACAA+GGG | - | chr8_1:12951871-12951890 | Msa1179520:intron | 35.0% | |
| ! | TGTTCATTTTCTCACCCAAA+GGG | + | chr8_1:12952000-12952019 | None:intergenic | 35.0% |
| ! | ATGTTCATTTTCTCACCCAA+AGG | + | chr8_1:12952001-12952020 | None:intergenic | 35.0% |
| !!! | TCTTTTGACTTCCTTCTTGA+AGG | + | chr8_1:12952090-12952109 | None:intergenic | 35.0% |
| TCAAGAAGGAAGTCAAAAGA+AGG | - | chr8_1:12952090-12952109 | Msa1179520:intron | 35.0% | |
| TACAAAAAGCTTACCTCCAT+AGG | + | chr8_1:12952127-12952146 | None:intergenic | 35.0% | |
| GTGGACAGAGATATACAAAA+GGG | - | chr8_1:12952235-12952254 | Msa1179520:CDS | 35.0% | |
| AAGGGAGAATGATATTCTTC+AGG | - | chr8_1:12952314-12952333 | Msa1179520:CDS | 35.0% | |
| ATTTAATGCATGTCAGACAC+CGG | - | chr8_1:12952435-12952454 | Msa1179520:intron | 35.0% | |
| AATCCTTATGCAAAGGAGTT+TGG | - | chr8_1:12952588-12952607 | Msa1179520:CDS | 35.0% | |
| ATTGTCAGTAGAATGCGAAA+AGG | + | chr8_1:12952718-12952737 | None:intergenic | 35.0% | |
| ACTTTACCATGCCTAAACTT+TGG | + | chr8_1:12953019-12953038 | None:intergenic | 35.0% | |
| CGTTGTATACTCCTATAACA+TGG | + | chr8_1:12953084-12953103 | None:intergenic | 35.0% | |
| TGTGACACAAACAAATAGCA+AGG | + | chr8_1:12953114-12953133 | None:intergenic | 35.0% | |
| GCTGAATATACAGGAATAAC+TGG | + | chr8_1:12953275-12953294 | None:intergenic | 35.0% | |
| ATATTCAGCAAAGCCAGATA+TGG | - | chr8_1:12953286-12953305 | Msa1179520:intron | 35.0% | |
| AAAGCCAGATATGGTTAAGA+AGG | - | chr8_1:12953295-12953314 | Msa1179520:CDS | 35.0% | |
| AAATCTGTGAAACAGATCTC+GGG | - | chr8_1:12953636-12953655 | Msa1179520:CDS | 35.0% | |
| AGCACTAAAGATCAATGTCA+AGG | - | chr8_1:12953724-12953743 | Msa1179520:CDS | 35.0% | |
| AAGAAACCAAGGTGATACTT+TGG | + | chr8_1:12953791-12953810 | None:intergenic | 35.0% | |
| ! | TTTTGGATGCTATAAGTTCC+AGG | - | chr8_1:12953913-12953932 | Msa1179520:CDS | 35.0% |
| TATAAGTTCCAGGATTCCAT+TGG | - | chr8_1:12953923-12953942 | Msa1179520:CDS | 35.0% | |
| ! | TAGGAGTATGGAAATGCTTA+CGG | + | chr8_1:12954030-12954049 | None:intergenic | 35.0% |
| AGCTATGAGTTATAGGAGTA+TGG | + | chr8_1:12954042-12954061 | None:intergenic | 35.0% | |
| !! | GGCTCTGAATATTGTTATTC+AGG | - | chr8_1:12954078-12954097 | Msa1179520:CDS | 35.0% |
| TTAATAATTTCCTCTCGAGG+AGG | + | chr8_1:12954163-12954182 | None:intergenic | 35.0% | |
| CCTTGAATCATTCATCATCA+CGG | - | chr8_1:12954286-12954305 | Msa1179520:intron | 35.0% | |
| ! | GGATAATATTTTACAGGGAC+GGG | - | chr8_1:12954390-12954409 | Msa1179520:intron | 35.0% |
| ! | GATAATATTTTACAGGGACG+GGG | - | chr8_1:12954391-12954410 | Msa1179520:intron | 35.0% |
| CATTTGTCGTGGTTCAAAAA+CGG | - | chr8_1:12954595-12954614 | Msa1179520:intron | 35.0% | |
| ! | GATATTTTCTTTTCGCCGAA+AGG | - | chr8_1:12954782-12954801 | Msa1179520:intron | 35.0% |
| TTATTGCTGGAGTTGAAACA+TGG | - | chr8_1:12954867-12954886 | Msa1179520:CDS | 35.0% | |
| CATGGCTAATTGGTTAATGT+AGG | - | chr8_1:12954885-12954904 | Msa1179520:CDS | 35.0% | |
| ATTGGTTAATGTAGGAACTG+TGG | - | chr8_1:12954893-12954912 | Msa1179520:CDS | 35.0% | |
| AGTTAAGGACTGAATCTCAT+CGG | + | chr8_1:12955113-12955132 | None:intergenic | 35.0% | |
| ! | TTTCCATTTTCATGGACATC+AGG | + | chr8_1:12955486-12955505 | None:intergenic | 35.0% |
| ! | CTTGCGATTTTCCATTTTCA+TGG | + | chr8_1:12955494-12955513 | None:intergenic | 35.0% |
| TGACTTCCAAGTAGAGAAAT+TGG | - | chr8_1:12955612-12955631 | Msa1179520:CDS | 35.0% | |
| AACTGGACTTGAATCTCAAC+TGG | - | chr8_1:12950285-12950304 | Msa1179520:three_prime_UTR | 40.0% | |
| ! | CCTCAATTGCTGCTACATTT+TGG | + | chr8_1:12950578-12950597 | None:intergenic | 40.0% |
| CCAAAATGTAGCAGCAATTG+AGG | - | chr8_1:12950575-12950594 | Msa1179520:intron | 40.0% | |
| CTTCACCAGAACACTGAATT+GGG | - | chr8_1:12950752-12950771 | Msa1179520:intron | 40.0% | |
| TCTTTCCCAATTCAGTGTTC+TGG | + | chr8_1:12950760-12950779 | None:intergenic | 40.0% | |
| AAGAAGCTCCCTGTTTATGA+CGG | - | chr8_1:12950776-12950795 | Msa1179520:intron | 40.0% | |
| ! | ATTGAGGATGATGAGGGTAT+TGG | - | chr8_1:12950863-12950882 | Msa1179520:CDS | 40.0% |
| !! | ATGAGGGTATTGGTACTACA+AGG | - | chr8_1:12950873-12950892 | Msa1179520:CDS | 40.0% |
| GCTTCTCAGTGGAAAAAAAG+TGG | - | chr8_1:12951048-12951067 | Msa1179520:intron | 40.0% | |
| !! | ATGGCATTGATAGCTTCTTG+TGG | + | chr8_1:12951079-12951098 | None:intergenic | 40.0% |
| AAGTATAAGGCCTACTCAGA+TGG | - | chr8_1:12951299-12951318 | Msa1179520:CDS | 40.0% | |
| AGTATAAGGCCTACTCAGAT+GGG | - | chr8_1:12951300-12951319 | Msa1179520:CDS | 40.0% | |
| AGTGATAATCCCATCTGAGT+AGG | + | chr8_1:12951312-12951331 | None:intergenic | 40.0% | |
| TGTCTCAACCTTACTGTTCT+CGG | - | chr8_1:12951385-12951404 | Msa1179520:CDS | 40.0% | |
| TTTACTTATCGGCCGAACTT+TGG | + | chr8_1:12951428-12951447 | None:intergenic | 40.0% | |
| ! | GACATTGCAGCCCAAATTTT+AGG | - | chr8_1:12951608-12951627 | Msa1179520:intron | 40.0% |
| ! | AGAAGGAAGTACAGGATAAC+AGG | - | chr8_1:12951848-12951867 | Msa1179520:intron | 40.0% |
| GATTATCATCACAGCCTACA+AGG | - | chr8_1:12951870-12951889 | Msa1179520:intron | 40.0% | |
| TCACCCAAAGGGAAACTATT+CGG | + | chr8_1:12951989-12952008 | None:intergenic | 40.0% | |
| TCTTGAAGGCAAGGTAAATG+AGG | + | chr8_1:12952076-12952095 | None:intergenic | 40.0% | |
| CATTTACCTTGCCTTCAAGA+AGG | - | chr8_1:12952076-12952095 | Msa1179520:intron | 40.0% | |
| GAAGGTGAACTATTTGCCTA+TGG | - | chr8_1:12952108-12952127 | Msa1179520:intron | 40.0% | |
| TACTAGGCATGCAAGATAGT+TGG | - | chr8_1:12952213-12952232 | Msa1179520:intron | 40.0% | |
| GGTGGACAGAGATATACAAA+AGG | - | chr8_1:12952234-12952253 | Msa1179520:CDS | 40.0% | |
| TTTCAGACAGCTCAGATTGT+AGG | + | chr8_1:12952466-12952485 | None:intergenic | 40.0% | |
| ATGCCAAACTCCTTTGCATA+AGG | + | chr8_1:12952594-12952613 | None:intergenic | 40.0% | |
| TGAAAAATTACCCATGGAGC+AGG | + | chr8_1:12952660-12952679 | None:intergenic | 40.0% | |
| ATGTTCCATTGTCCAACTTG+AGG | + | chr8_1:12952802-12952821 | None:intergenic | 40.0% | |
| ACAATGGAACATGACGAACA+AGG | - | chr8_1:12952810-12952829 | Msa1179520:intron | 40.0% | |
| GCGTAGTCACACTAAGATTA+TGG | - | chr8_1:12952836-12952855 | Msa1179520:intron | 40.0% | |
| GTTCAGACTTGCCAAAGTTT+AGG | - | chr8_1:12953005-12953024 | Msa1179520:CDS | 40.0% | |
| !! | TCTGGCTTTGCTGAATATAC+AGG | + | chr8_1:12953284-12953303 | None:intergenic | 40.0% |
| AAGGCCTTCTTAACCATATC+TGG | + | chr8_1:12953302-12953321 | None:intergenic | 40.0% | |
| ! | TACAGTCCAAAGTATCACCT+TGG | - | chr8_1:12953782-12953801 | Msa1179520:intron | 40.0% |
| ! | AGGAAGGAACACAGTACTTT+TGG | - | chr8_1:12953896-12953915 | Msa1179520:CDS | 40.0% |
| GTAGGAATGTCACTAACCAA+TGG | + | chr8_1:12953942-12953961 | None:intergenic | 40.0% | |
| GATGTATCTCATCCTGAATC+TGG | - | chr8_1:12953978-12953997 | Msa1179520:intron | 40.0% | |
| AGTGACAAAGTATGCAGGAT+TGG | - | chr8_1:12954126-12954145 | Msa1179520:CDS | 40.0% | |
| ! | CCGTGATGATGAATGATTCA+AGG | + | chr8_1:12954289-12954308 | None:intergenic | 40.0% |
| ATTCATCATCACGGCTAACT+TGG | - | chr8_1:12954295-12954314 | Msa1179520:CDS | 40.0% | |
| CTCTCATTTCAGAAAGCAAC+TGG | - | chr8_1:12954353-12954372 | Msa1179520:CDS | 40.0% | |
| CAACTGGAAAAAAACCATGC+AGG | - | chr8_1:12954369-12954388 | Msa1179520:CDS | 40.0% | |
| AGAAGTGGGAATATCTTACC+AGG | - | chr8_1:12954669-12954688 | Msa1179520:CDS | 40.0% | |
| GCAATTCTGATCACACCTTT+CGG | + | chr8_1:12954800-12954819 | None:intergenic | 40.0% | |
| GGAGTTGAAACATGGCTAAT+TGG | - | chr8_1:12954875-12954894 | Msa1179520:CDS | 40.0% | |
| AAGTAGAAGTCGAACTCAGT+AGG | + | chr8_1:12954939-12954958 | None:intergenic | 40.0% | |
| TTCTACTTGTGTAGTCATGC+TGG | - | chr8_1:12954951-12954970 | Msa1179520:CDS | 40.0% | |
| TCTGTCATCAAAACATGAGG+AGG | + | chr8_1:12955216-12955235 | None:intergenic | 40.0% | |
| ACAGATATGCAAGATGTACG+CGG | - | chr8_1:12955231-12955250 | Msa1179520:CDS | 40.0% | |
| GAACCTGATGTCCATGAAAA+TGG | - | chr8_1:12955480-12955499 | Msa1179520:intron | 40.0% | |
| CCTGTCTGCATTTGCAATTG+TGG | + | chr8_1:12950633-12950652 | None:intergenic | 45.0% | |
| CCACAATTGCAAATGCAGAC+AGG | - | chr8_1:12950630-12950649 | Msa1179520:intron | 45.0% | |
| GCTTCACCAGAACACTGAAT+TGG | - | chr8_1:12950751-12950770 | Msa1179520:intron | 45.0% | |
| TCTCTGCACCGTCATAAACA+GGG | + | chr8_1:12950787-12950806 | None:intergenic | 45.0% | |
| TTCTCTGCACCGTCATAAAC+AGG | + | chr8_1:12950788-12950807 | None:intergenic | 45.0% | |
| GCAGAGAATCTTTACACTGC+CGG | - | chr8_1:12950800-12950819 | Msa1179520:intron | 45.0% | |
| CAGTTACATGAGCTTCTCAG+TGG | - | chr8_1:12951037-12951056 | Msa1179520:CDS | 45.0% | |
| TGAAGGAGCTTGCATCTCAT+AGG | - | chr8_1:12951110-12951129 | Msa1179520:intron | 45.0% | |
| TGGGAGCTTACACTATTCTC+CGG | - | chr8_1:12951218-12951237 | Msa1179520:intron | 45.0% | |
| AAACCACATAAGCTGACTGG+TGG | - | chr8_1:12951249-12951268 | Msa1179520:intron | 45.0% | |
| GTCTCAACCTTACTGTTCTC+GGG | - | chr8_1:12951386-12951405 | Msa1179520:CDS | 45.0% | |
| AACCTTACTGTTCTCGGGAA+AGG | - | chr8_1:12951391-12951410 | Msa1179520:intron | 45.0% | |
| ACCTTACTGTTCTCGGGAAA+GGG | - | chr8_1:12951392-12951411 | Msa1179520:intron | 45.0% | |
| TGTGTTAAGGACGAACCAAG+TGG | + | chr8_1:12951503-12951522 | None:intergenic | 45.0% | |
| TCCTCCGAATAGTTTCCCTT+TGG | - | chr8_1:12951982-12952001 | Msa1179520:CDS | 45.0% | |
| CCTCCGAATAGTTTCCCTTT+GGG | - | chr8_1:12951983-12952002 | Msa1179520:CDS | 45.0% | |
| TGACTTCCTTCTTGAAGGCA+AGG | + | chr8_1:12952085-12952104 | None:intergenic | 45.0% | |
| GGTGAACTATTTGCCTATGG+AGG | - | chr8_1:12952111-12952130 | Msa1179520:intron | 45.0% | |
| TAGGCATGCAAGATAGTTGG+TGG | - | chr8_1:12952216-12952235 | Msa1179520:intron | 45.0% | |
| ATATCATTCTCCCTTTCGCG+TGG | + | chr8_1:12952309-12952328 | None:intergenic | 45.0% | |
| AAGGAGTTTGGCATCAGCAT+CGG | - | chr8_1:12952600-12952619 | Msa1179520:CDS | 45.0% | |
| CAACGAACTTGCATCAGTTG+AGG | - | chr8_1:12952623-12952642 | Msa1179520:CDS | 45.0% | |
| AACTTGCATCAGTTGAGGCT+AGG | - | chr8_1:12952628-12952647 | Msa1179520:CDS | 45.0% | |
| ACTTGCATCAGTTGAGGCTA+GGG | - | chr8_1:12952629-12952648 | Msa1179520:CDS | 45.0% | |
| !! | TCTTGCCTCAAGTTGGACAA+TGG | - | chr8_1:12952794-12952813 | Msa1179520:intron | 45.0% |
| GGCAAGTCTGAACTAACTGT+TGG | + | chr8_1:12952998-12953017 | None:intergenic | 45.0% | |
| GACTTGCCAAAGTTTAGGCA+TGG | - | chr8_1:12953010-12953029 | Msa1179520:CDS | 45.0% | |
| GCCATTCTTCCAGACAACAA+TGG | - | chr8_1:12953383-12953402 | Msa1179520:CDS | 45.0% | |
| GCCATTGTTGTCTGGAAGAA+TGG | + | chr8_1:12953387-12953406 | None:intergenic | 45.0% | |
| TAGAGAGAGCCATTGTTGTC+TGG | + | chr8_1:12953395-12953414 | None:intergenic | 45.0% | |
| GACAACAATGGCTCTCTCTA+TGG | - | chr8_1:12953395-12953414 | Msa1179520:intron | 45.0% | |
| ATGAGTGGAAGCAGATTCGT+CGG | + | chr8_1:12953537-12953556 | None:intergenic | 45.0% | |
| GTCACTAACCAATGGAATCC+TGG | + | chr8_1:12953934-12953953 | None:intergenic | 45.0% | |
| ATCTCATCCTGAATCTGGAG+AGG | - | chr8_1:12953983-12954002 | Msa1179520:intron | 45.0% | |
| CAGGGAGAGCTATGAGTTAT+AGG | + | chr8_1:12954049-12954068 | None:intergenic | 45.0% | |
| ! | CCTGCATACTTTGTCACTTC+TGG | + | chr8_1:12954124-12954143 | None:intergenic | 45.0% |
| CCAGAAGTGACAAAGTATGC+AGG | - | chr8_1:12954121-12954140 | Msa1179520:CDS | 45.0% | |
| AAATGTTGGAACGATCCTCG+TGG | - | chr8_1:12954193-12954212 | Msa1179520:intron | 45.0% | |
| TCGTTTATGGTGGCATGATC+AGG | - | chr8_1:12954221-12954240 | Msa1179520:intron | 45.0% | |
| TGGTGGCATGATCAGGTAAT+TGG | - | chr8_1:12954228-12954247 | Msa1179520:intron | 45.0% | |
| AAGTGAAGGACAGTTCTACC+AGG | - | chr8_1:12954415-12954434 | Msa1179520:intron | 45.0% | |
| !! | ATGTGGAAGTACCTTACGGA+TGG | + | chr8_1:12954462-12954481 | None:intergenic | 45.0% |
| TGTGTAGGCTTGTGCATCTT+TGG | - | chr8_1:12954548-12954567 | Msa1179520:intron | 45.0% | |
| TCACAACGACAGAAACAGCA+TGG | - | chr8_1:12954644-12954663 | Msa1179520:CDS | 45.0% | |
| AGAAACAGCATGGACAGAAG+TGG | - | chr8_1:12954654-12954673 | Msa1179520:CDS | 45.0% | |
| GAAACAGCATGGACAGAAGT+GGG | - | chr8_1:12954655-12954674 | Msa1179520:CDS | 45.0% | |
| GGTTAATGTAGGAACTGTGG+TGG | - | chr8_1:12954896-12954915 | Msa1179520:CDS | 45.0% | |
| ACATCTACGTCGCTACGTTA+GGG | - | chr8_1:12954992-12955011 | Msa1179520:intron | 45.0% | |
| TTAGGGAACATTGTGAGTGC+TGG | - | chr8_1:12955009-12955028 | Msa1179520:intron | 45.0% | |
| ATATGCAAGATGTACGCGGT+CGG | - | chr8_1:12955235-12955254 | Msa1179520:CDS | 45.0% | |
| TTACAGAGCGCGATTCTACA+TGG | - | chr8_1:12955458-12955477 | Msa1179520:intron | 45.0% | |
| TTCTCTTTCAGAGCTGGTAG+TGG | + | chr8_1:12955546-12955565 | None:intergenic | 45.0% | |
| !! | ACTACCAGCTCTGAAAGAGA+AGG | - | chr8_1:12955545-12955564 | Msa1179520:CDS | 45.0% |
| TTCACCTTCTCTTTCAGAGC+TGG | + | chr8_1:12955552-12955571 | None:intergenic | 45.0% | |
| !!! | AAAAATATTTTCAAAAAAAA+TGG | + | chr8_1:12952167-12952186 | None:intergenic | 5.0% |
| CTTGTGTTTCCTTCTAGGCC+TGG | - | chr8_1:12950337-12950356 | Msa1179520:three_prime_UTR | 50.0% | |
| TTTCCTTCTAGGCCTGGCTA+TGG | - | chr8_1:12950343-12950362 | Msa1179520:three_prime_UTR | 50.0% | |
| GTGTGCAAAAGGAAGCGAAC+CGG | + | chr8_1:12950822-12950841 | None:intergenic | 50.0% | |
| AAGCCACCAGTCAGCTTATG+TGG | + | chr8_1:12951255-12951274 | None:intergenic | 50.0% | |
| ACATAAGCTGACTGGTGGCT+TGG | - | chr8_1:12951254-12951273 | Msa1179520:intron | 50.0% | |
| ! | TGACTGGTGGCTTGGAATCA+TGG | - | chr8_1:12951262-12951281 | Msa1179520:intron | 50.0% |
| TCTTCCAGACATGGCATCCA+CGG | - | chr8_1:12951559-12951578 | Msa1179520:CDS | 50.0% | |
| GAGCGGTTCTATAAACACCG+TGG | + | chr8_1:12951579-12951598 | None:intergenic | 50.0% | |
| GCAATGTCAATCACAGGGAG+CGG | + | chr8_1:12951596-12951615 | None:intergenic | 50.0% | |
| GGGCTGCAATGTCAATCACA+GGG | + | chr8_1:12951601-12951620 | None:intergenic | 50.0% | |
| TGGGCTGCAATGTCAATCAC+AGG | + | chr8_1:12951602-12951621 | None:intergenic | 50.0% | |
| ATGCGATCTGCGTCTGACAA+TGG | + | chr8_1:12951653-12951672 | None:intergenic | 50.0% | |
| CCATACCTGAGTTCCCTTGT+AGG | + | chr8_1:12951887-12951906 | None:intergenic | 50.0% | |
| CCTACAAGGGAACTCAGGTA+TGG | - | chr8_1:12951884-12951903 | Msa1179520:intron | 50.0% | |
| CCCAAAGGGAAACTATTCGG+AGG | + | chr8_1:12951986-12952005 | None:intergenic | 50.0% | |
| GCTCAGATTGTAGGTGTCTC+CGG | + | chr8_1:12952457-12952476 | None:intergenic | 50.0% | |
| TAGGGTTCTTCCTGCTCCAT+GGG | - | chr8_1:12952647-12952666 | Msa1179520:CDS | 50.0% | |
| TGAGTGGAAGCAGATTCGTC+GGG | + | chr8_1:12953536-12953555 | None:intergenic | 50.0% | |
| ATGCTTACGGCAGCAATGGA+TGG | + | chr8_1:12954017-12954036 | None:intergenic | 50.0% | |
| GGAAATGCTTACGGCAGCAA+TGG | + | chr8_1:12954021-12954040 | None:intergenic | 50.0% | |
| TAGCTCTCCCTGTGTTCGAT+CGG | - | chr8_1:12954057-12954076 | Msa1179520:intron | 50.0% | |
| TTCAGAGCCGATCGAACACA+GGG | + | chr8_1:12954067-12954086 | None:intergenic | 50.0% | |
| ATTCAGAGCCGATCGAACAC+AGG | + | chr8_1:12954068-12954087 | None:intergenic | 50.0% | |
| ! | TGTCACTTCTGGCCAGTCTT+GGG | + | chr8_1:12954113-12954132 | None:intergenic | 50.0% |
| ! | TTGTCACTTCTGGCCAGTCT+TGG | + | chr8_1:12954114-12954133 | None:intergenic | 50.0% |
| CGAGCTCGTATAGCAAAACC+TGG | + | chr8_1:12954436-12954455 | None:intergenic | 50.0% | |
| !! | GCTTGTGCATCTTTGGAGTC+TGG | - | chr8_1:12954555-12954574 | Msa1179520:intron | 50.0% |
| TGGAGTCTGGTTACCAACCT+CGG | - | chr8_1:12954568-12954587 | Msa1179520:intron | 50.0% | |
| CGACAAATGTAACCCGAGGT+TGG | + | chr8_1:12954584-12954603 | None:intergenic | 50.0% | |
| ACCTCGGGTTACATTTGTCG+TGG | - | chr8_1:12954584-12954603 | Msa1179520:intron | 50.0% | |
| ACCACGACAAATGTAACCCG+AGG | + | chr8_1:12954588-12954607 | None:intergenic | 50.0% | |
| GTGTAGTCATGCTGGAGTTC+AGG | - | chr8_1:12954959-12954978 | Msa1179520:CDS | 50.0% | |
| GACATCTACGTCGCTACGTT+AGG | - | chr8_1:12954991-12955010 | Msa1179520:intron | 50.0% | |
| ! | TGTACGCGGTCGGTTTCTTT+AGG | - | chr8_1:12955245-12955264 | Msa1179520:CDS | 50.0% |
| AGATGAGCATAGTACGCAGG+AGG | + | chr8_1:12955432-12955451 | None:intergenic | 50.0% | |
| TCCTGCGTACTATGCTCATC+TGG | - | chr8_1:12955431-12955450 | Msa1179520:intron | 50.0% | |
| TTGCCATAGCCAGGCCTAGA+AGG | + | chr8_1:12950349-12950368 | None:intergenic | 55.0% | |
| TAGGCCTGGCTATGGCAAAC+TGG | - | chr8_1:12950351-12950370 | Msa1179520:three_prime_UTR | 55.0% | |
| AGGCCTGGCTATGGCAAACT+GGG | - | chr8_1:12950352-12950371 | Msa1179520:three_prime_UTR | 55.0% | |
| GTTCCCAGTTTGCCATAGCC+AGG | + | chr8_1:12950358-12950377 | None:intergenic | 55.0% | |
| ! | GGTGGCTTGGAATCATGGAG+CGG | - | chr8_1:12951267-12951286 | Msa1179520:intron | 55.0% |
| GCCCTTTCCCGAGAACAGTA+AGG | + | chr8_1:12951396-12951415 | None:intergenic | 55.0% | |
| AACACCGTGGATGCCATGTC+TGG | + | chr8_1:12951566-12951585 | None:intergenic | 55.0% | |
| GTCAGACGCAGATCGCATCA+AGG | - | chr8_1:12951655-12951674 | Msa1179520:intron | 55.0% | |
| CACAGCCTACAAGGGAACTC+AGG | - | chr8_1:12951879-12951898 | Msa1179520:intron | 55.0% | |
| ATGTCAGCGACCACGCGAAA+GGG | - | chr8_1:12952296-12952315 | Msa1179520:CDS | 55.0% | |
| CTAGGGTTCTTCCTGCTCCA+TGG | - | chr8_1:12952646-12952665 | Msa1179520:CDS | 55.0% | |
| CACACGTCCTCTCCAGATTC+AGG | + | chr8_1:12953993-12954012 | None:intergenic | 55.0% | |
| AGGTTGTAGCCTCCCAAGAC+TGG | - | chr8_1:12954098-12954117 | Msa1179520:CDS | 55.0% | |
| TGTTGGAACGATCCTCGTGG+CGG | - | chr8_1:12954196-12954215 | Msa1179520:intron | 55.0% | |
| CCATAAACGATACCGCCACG+AGG | + | chr8_1:12954211-12954230 | None:intergenic | 55.0% | |
| CCTCGTGGCGGTATCGTTTA+TGG | - | chr8_1:12954208-12954227 | Msa1179520:intron | 55.0% | |
| CGTGGCGGTATCGTTTATGG+TGG | - | chr8_1:12954211-12954230 | Msa1179520:intron | 55.0% | |
| TACAGGGACGGGGTAAGTGA+AGG | - | chr8_1:12954401-12954420 | Msa1179520:intron | 55.0% | |
| GGAGTCTGGTTACCAACCTC+GGG | - | chr8_1:12954569-12954588 | Msa1179520:intron | 55.0% | |
| GCCAGATGAGCATAGTACGC+AGG | + | chr8_1:12955435-12955454 | None:intergenic | 55.0% | |
| CATGTCAGCGACCACGCGAA+AGG | - | chr8_1:12952295-12952314 | Msa1179520:CDS | 60.0% | |
| CACTTCTGGCCAGTCTTGGG+AGG | + | chr8_1:12954110-12954129 | None:intergenic | 60.0% | |
| ATGTGCTCAGCCTCCTCGAG+AGG | - | chr8_1:12954150-12954169 | Msa1179520:CDS | 60.0% | |
| CGAGCTCGATGCCATCCGTA+AGG | - | chr8_1:12954448-12954467 | Msa1179520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 12950240 | 12955723 | 12950240 | ID=Msa1179520;Name=Msa1179520 |
| chr8_1 | mRNA | 12950240 | 12955723 | 12950240 | ID=Msa1179520-mRNA-1;Parent=Msa1179520;Name=Msa1179520-mRNA-1;_AED=0.12;_eAED=0.12;_QI=19|1|0.85|1|1|1|21|187|862 |
| chr8_1 | exon | 12950240 | 12950536 | 12950240 | ID=Msa1179520-mRNA-1:exon:4684;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12950697 | 12950728 | 12950697 | ID=Msa1179520-mRNA-1:exon:4683;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12950814 | 12950908 | 12950814 | ID=Msa1179520-mRNA-1:exon:4682;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12950983 | 12951056 | 12950983 | ID=Msa1179520-mRNA-1:exon:4681;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12951273 | 12951408 | 12951273 | ID=Msa1179520-mRNA-1:exon:4680;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12951494 | 12951620 | 12951494 | ID=Msa1179520-mRNA-1:exon:4679;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12951721 | 12951863 | 12951721 | ID=Msa1179520-mRNA-1:exon:4678;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12951935 | 12952072 | 12951935 | ID=Msa1179520-mRNA-1:exon:4677;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12952218 | 12952339 | 12952218 | ID=Msa1179520-mRNA-1:exon:4676;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12952547 | 12952706 | 12952547 | ID=Msa1179520-mRNA-1:exon:4675;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12952932 | 12953054 | 12952932 | ID=Msa1179520-mRNA-1:exon:4674;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12953132 | 12953203 | 12953132 | ID=Msa1179520-mRNA-1:exon:4673;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12953295 | 12953402 | 12953295 | ID=Msa1179520-mRNA-1:exon:4672;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12953628 | 12953744 | 12953628 | ID=Msa1179520-mRNA-1:exon:4671;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12953831 | 12953969 | 12953831 | ID=Msa1179520-mRNA-1:exon:4670;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12954063 | 12954169 | 12954063 | ID=Msa1179520-mRNA-1:exon:4669;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12954287 | 12954396 | 12954287 | ID=Msa1179520-mRNA-1:exon:4668;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12954624 | 12954757 | 12954624 | ID=Msa1179520-mRNA-1:exon:4667;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12954832 | 12954978 | 12954832 | ID=Msa1179520-mRNA-1:exon:4666;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12955069 | 12955277 | 12955069 | ID=Msa1179520-mRNA-1:exon:4665;Parent=Msa1179520-mRNA-1 |
| chr8_1 | exon | 12955519 | 12955723 | 12955519 | ID=Msa1179520-mRNA-1:exon:4664;Parent=Msa1179520-mRNA-1 |
| chr8_1 | five_prime_UTR | 12955705 | 12955723 | 12955705 | ID=Msa1179520-mRNA-1:five_prime_utr;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12955519 | 12955704 | 12955519 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12955069 | 12955277 | 12955069 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12954832 | 12954978 | 12954832 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12954624 | 12954757 | 12954624 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12954287 | 12954396 | 12954287 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12954063 | 12954169 | 12954063 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12953831 | 12953969 | 12953831 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12953628 | 12953744 | 12953628 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12953295 | 12953402 | 12953295 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12953132 | 12953203 | 12953132 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12952932 | 12953054 | 12952932 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12952547 | 12952706 | 12952547 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12952218 | 12952339 | 12952218 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12951935 | 12952072 | 12951935 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12951721 | 12951863 | 12951721 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12951494 | 12951620 | 12951494 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12951273 | 12951408 | 12951273 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12950983 | 12951056 | 12950983 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12950814 | 12950908 | 12950814 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12950697 | 12950728 | 12950697 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | CDS | 12950427 | 12950536 | 12950427 | ID=Msa1179520-mRNA-1:cds;Parent=Msa1179520-mRNA-1 |
| chr8_1 | three_prime_UTR | 12950240 | 12950426 | 12950240 | ID=Msa1179520-mRNA-1:three_prime_utr;Parent=Msa1179520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
