Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331540 | XP_013464493.1 | 83.415 | 205 | 28 | 1 | 1 | 205 | 1 | 199 | 6.05e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331540 | sp|G7LCV1|KI106_MEDTR | 47.291 | 203 | 83 | 6 | 1 | 188 | 1 | 194 | 2.98e-51 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029910 | Msa0331540 | 0.816414 | 5.599383e-52 | -8.615850e-47 |
| Msa0036430 | Msa0331540 | 0.822679 | 2.081686e-53 | -8.615850e-47 |
| Msa0084500 | Msa0331540 | 0.832395 | 9.688740e-56 | -8.615850e-47 |
| Msa0130010 | Msa0331540 | 0.809763 | 1.611526e-50 | -8.615850e-47 |
| Msa0130570 | Msa0331540 | 0.828249 | 9.985618e-55 | -8.615850e-47 |
| Msa0145310 | Msa0331540 | 0.828673 | 7.889917e-55 | -8.615850e-47 |
| Msa0173990 | Msa0331540 | 0.803303 | 3.717809e-49 | -8.615850e-47 |
| Msa0176470 | Msa0331540 | 0.818171 | 2.253414e-52 | -8.615850e-47 |
| Msa0194380 | Msa0331540 | 0.840948 | 6.393002e-58 | -8.615850e-47 |
| Msa0206800 | Msa0331540 | 0.828058 | 1.110252e-54 | -8.615850e-47 |
| Msa0212150 | Msa0331540 | 0.801992 | 6.930971e-49 | -8.615850e-47 |
| Msa0219190 | Msa0331540 | 0.814207 | 1.732622e-51 | -8.615850e-47 |
| Msa0236110 | Msa0331540 | 0.826832 | 2.184517e-54 | -8.615850e-47 |
| Msa0252770 | Msa0331540 | 0.806464 | 8.123188e-50 | -8.615850e-47 |
| Msa0273990 | Msa0331540 | 0.815205 | 1.041403e-51 | -8.615850e-47 |
| Msa0288190 | Msa0331540 | 0.801738 | 7.814691e-49 | -8.615850e-47 |
| Msa0288200 | Msa0331540 | 0.810213 | 1.288653e-50 | -8.615850e-47 |
| Msa0298240 | Msa0331540 | 0.852415 | 4.686280e-61 | -8.615850e-47 |
| Msa0314630 | Msa0331540 | 0.831942 | 1.253896e-55 | -8.615850e-47 |
| Msa0322830 | Msa0331540 | 0.800499 | 1.400766e-48 | -8.615850e-47 |
| Msa0326540 | Msa0331540 | 0.822128 | 2.795930e-53 | -8.615850e-47 |
| Msa0329620 | Msa0331540 | 0.822116 | 2.814320e-53 | -8.615850e-47 |
| Msa0331530 | Msa0331540 | 0.908740 | 1.228701e-81 | -8.615850e-47 |
| Msa0331540 | Msa0407890 | 0.815715 | 8.022316e-52 | -8.615850e-47 |
| Msa0331540 | Msa0457190 | 0.814544 | 1.459292e-51 | -8.615850e-47 |
| Msa0331540 | Msa0469260 | 0.818523 | 1.874669e-52 | -8.615850e-47 |
| Msa0331540 | Msa0503580 | 0.821720 | 3.474459e-53 | -8.615850e-47 |
| Msa0331540 | Msa0512900 | 0.805094 | 1.575525e-49 | -8.615850e-47 |
| Msa0331540 | Msa0520510 | 0.807331 | 5.326500e-50 | -8.615850e-47 |
| Msa0331540 | Msa0575740 | 0.802462 | 5.547742e-49 | -8.615850e-47 |
| Msa0331540 | Msa0639460 | 0.804998 | 1.650097e-49 | -8.615850e-47 |
| Msa0331540 | Msa0641360 | 0.804046 | 2.606821e-49 | -8.615850e-47 |
| Msa0331540 | Msa0682530 | 0.811025 | 8.604906e-51 | -8.615850e-47 |
| Msa0331540 | Msa0742180 | 0.806933 | 6.466242e-50 | -8.615850e-47 |
| Msa0331540 | Msa0778930 | 0.800645 | 1.307609e-48 | -8.615850e-47 |
| Msa0331540 | Msa0816450 | 0.814991 | 1.161994e-51 | -8.615850e-47 |
| Msa0331540 | Msa0819680 | 0.806393 | 8.407228e-50 | -8.615850e-47 |
| Msa0331540 | Msa0823400 | 0.802101 | 6.582968e-49 | -8.615850e-47 |
| Msa0331540 | Msa0843640 | 0.801060 | 1.075782e-48 | -8.615850e-47 |
| Msa0331540 | Msa0885060 | 0.806847 | 6.743637e-50 | -8.615850e-47 |
| Msa0331540 | Msa0946210 | 0.803055 | 4.183337e-49 | -8.615850e-47 |
| Msa0331540 | Msa0979510 | 0.830302 | 3.170950e-55 | -8.615850e-47 |
| Msa0331540 | Msa0999340 | 0.811870 | 5.637886e-51 | -8.615850e-47 |
| Msa0331540 | Msa0999350 | 0.804955 | 1.685231e-49 | -8.615850e-47 |
| Msa0331540 | Msa0999360 | 0.808026 | 3.791634e-50 | -8.615850e-47 |
| Msa0331540 | Msa0999390 | 0.809602 | 1.744837e-50 | -8.615850e-47 |
| Msa0331540 | Msa0999400 | 0.805444 | 1.331296e-49 | -8.615850e-47 |
| Msa0331540 | Msa0999410 | 0.821777 | 3.371601e-53 | -8.615850e-47 |
| Msa0331540 | Msa1020720 | 0.802335 | 5.890020e-49 | -8.615850e-47 |
| Msa0331540 | Msa1033560 | 0.801375 | 9.276727e-49 | -8.615850e-47 |
| Msa0331540 | Msa1034680 | 0.831557 | 1.560000e-55 | -8.615850e-47 |
| Msa0331540 | Msa1037910 | 0.831709 | 1.431656e-55 | -8.615850e-47 |
| Msa0331540 | Msa1042670 | 0.803927 | 2.760086e-49 | -8.615850e-47 |
| Msa0331540 | Msa1105890 | 0.800037 | 1.739206e-48 | -8.615850e-47 |
| Msa0331540 | Msa1113850 | 0.820859 | 5.491080e-53 | -8.615850e-47 |
| Msa0331540 | Msa1127140 | 0.803301 | 3.721341e-49 | -8.615850e-47 |
| Msa0331540 | Msa1160400 | 0.810681 | 1.021401e-50 | -8.615850e-47 |
| Msa0331540 | Msa1166400 | 0.805715 | 1.167689e-49 | -8.615850e-47 |
| Msa0331540 | Msa1169990 | 0.827131 | 1.852789e-54 | -8.615850e-47 |
| Msa0331540 | Msa1179520 | 0.818846 | 1.583720e-52 | -8.615850e-47 |
| Msa0331540 | Msa1228190 | 0.809490 | 1.844503e-50 | -8.615850e-47 |
| Msa0331540 | Msa1233560 | 0.843156 | 1.666467e-58 | -8.615850e-47 |
| Msa0331540 | Msa1271260 | 0.814557 | 1.450144e-51 | -8.615850e-47 |
| Msa0331540 | Msa1289280 | 0.803801 | 2.930483e-49 | -8.615850e-47 |
| Msa0331540 | Msa1307190 | 0.807233 | 5.586578e-50 | -8.615850e-47 |
| Msa0331540 | Msa1313970 | 0.833678 | 4.644974e-56 | -8.615850e-47 |
| Msa0331540 | Msa1345420 | 0.803050 | 4.195031e-49 | -8.615850e-47 |
| Msa0331540 | Msa1420060 | 0.824637 | 7.244281e-54 | -8.615850e-47 |
| Msa0331540 | Msa1421550 | 0.816788 | 4.615276e-52 | -8.615850e-47 |
| Msa0331540 | Msa1424690 | 0.822066 | 2.890206e-53 | -8.615850e-47 |
| Msa0331540 | Msa1435480 | 0.827189 | 1.794429e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331540 | MtrunA17_Chr2g0314431 | 83.415 | 205 | 28 | 1 | 1 | 205 | 1 | 199 | 5.57e-121 | 340 |
| Msa0331540 | MtrunA17_Chr2g0314441 | 66.190 | 210 | 54 | 4 | 1 | 205 | 1 | 198 | 1.12e-89 | 261 |
| Msa0331540 | MtrunA17_Chr8g0359161 | 47.291 | 203 | 83 | 6 | 1 | 188 | 1 | 194 | 2.19e-52 | 167 |
| Msa0331540 | MtrunA17_Chr4g0022761 | 45.960 | 198 | 87 | 6 | 1 | 188 | 1 | 188 | 9.68e-49 | 157 |
| Msa0331540 | MtrunA17_Chr1g0173431 | 44.776 | 201 | 88 | 6 | 1 | 188 | 1 | 191 | 3.10e-48 | 156 |
| Msa0331540 | MtrunA17_Chr3g0082671 | 43.350 | 203 | 90 | 6 | 1 | 188 | 1 | 193 | 2.13e-47 | 154 |
| Msa0331540 | MtrunA17_Chr4g0022751 | 43.564 | 202 | 90 | 6 | 1 | 188 | 1 | 192 | 9.85e-47 | 152 |
| Msa0331540 | MtrunA17_Chr3g0082661 | 43.350 | 203 | 90 | 6 | 1 | 188 | 1 | 193 | 2.31e-46 | 152 |
| Msa0331540 | MtrunA17_Chr8g0359111 | 43.564 | 202 | 90 | 6 | 1 | 188 | 1 | 192 | 4.08e-46 | 151 |
| Msa0331540 | MtrunA17_Chr3g0082641 | 42.857 | 203 | 91 | 6 | 1 | 188 | 1 | 193 | 4.11e-46 | 151 |
| Msa0331540 | MtrunA17_Chr3g0082681 | 42.857 | 203 | 91 | 6 | 1 | 188 | 1 | 193 | 1.35e-45 | 149 |
| Msa0331540 | MtrunA17_Chr3g0082651 | 42.857 | 203 | 91 | 6 | 1 | 188 | 1 | 193 | 1.11e-44 | 147 |
| Msa0331540 | MtrunA17_Chr7g0269461 | 44.059 | 202 | 87 | 8 | 1 | 188 | 1 | 190 | 2.45e-43 | 144 |
| Msa0331540 | MtrunA17_Chr6g0481911 | 32.727 | 165 | 103 | 5 | 14 | 173 | 10 | 171 | 5.05e-18 | 78.6 |
| Msa0331540 | MtrunA17_Chr6g0481941 | 30.732 | 205 | 120 | 8 | 14 | 205 | 10 | 205 | 6.46e-16 | 72.8 |
| Msa0331540 | MtrunA17_Chr6g0482041 | 30.622 | 209 | 109 | 9 | 8 | 189 | 4 | 203 | 8.73e-13 | 64.7 |
| Msa0331540 | MtrunA17_Chr6g0477751 | 29.050 | 179 | 109 | 7 | 8 | 174 | 4 | 176 | 8.19e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331540 | AT1G17860.1 | 29.187 | 209 | 120 | 8 | 11 | 205 | 1 | 195 | 4.75e-14 | 68.2 |
Find 50 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGTAATTTGCATGAAAA+TGG | 0.278573 | 2_4:-47459906 | Msa0331540:CDS |
| ACAATCTACAGAATGGAAAT+TGG | 0.284846 | 2_4:-47460081 | Msa0331540:CDS |
| AGTGACACGGCCTCCGATAT+CGG | 0.290496 | 2_4:+47460265 | None:intergenic |
| GTTTCTTGACCCACATATAA+AGG | 0.297981 | 2_4:+47460218 | None:intergenic |
| ATACAGTTGTTAAGGTGAAT+AGG | 0.332362 | 2_4:-47460142 | Msa0331540:CDS |
| CAGAATGGAAATTGGGTGAT+AGG | 0.341031 | 2_4:-47460073 | Msa0331540:CDS |
| CAAGCCTTAGCCTTATGTTA+TGG | 0.345426 | 2_4:-47460397 | Msa0331540:CDS |
| GGTCAAGAAACTACAGATAT+TGG | 0.348677 | 2_4:-47460206 | Msa0331540:CDS |
| TACAGTTGTTAAGGTGAATA+GGG | 0.357658 | 2_4:-47460141 | Msa0331540:CDS |
| AAGACTCCACTTGGAATTGA+AGG | 0.410273 | 2_4:-47459987 | Msa0331540:CDS |
| AAGGTTAATGTTCTCAAGGT+TGG | 0.412184 | 2_4:-47459843 | Msa0331540:CDS |
| AGGTTAATGTTCTCAAGGTT+GGG | 0.412594 | 2_4:-47459842 | Msa0331540:CDS |
| AACAGAAGATACAGTTGTTA+AGG | 0.418077 | 2_4:-47460150 | Msa0331540:CDS |
| CGGTTCATGCCCTTTATATG+TGG | 0.431349 | 2_4:-47460228 | Msa0331540:CDS |
| CAATCTACAGAATGGAAATT+GGG | 0.431621 | 2_4:-47460080 | Msa0331540:CDS |
| CTGATCTTATGTAATACTTC+CGG | 0.434280 | 2_4:+47460294 | None:intergenic |
| TTTCTTGACCCACATATAAA+GGG | 0.438692 | 2_4:+47460219 | None:intergenic |
| GTGACACGGCCTCCGATATC+GGG | 0.449326 | 2_4:+47460266 | None:intergenic |
| AGATCAGATGTACCCGATAT+CGG | 0.472186 | 2_4:-47460278 | Msa0331540:CDS |
| AATTGGGTGATAGGGACAAT+AGG | 0.474158 | 2_4:-47460064 | Msa0331540:CDS |
| TTTGATCAATCTTGTTGTCA+TGG | 0.481185 | 2_4:+47460424 | None:intergenic |
| AGGTTGTGCTAATGTTGGTA+TGG | 0.501409 | 2_4:+47460364 | None:intergenic |
| TCATGAAAAGCCATAACATA+AGG | 0.507153 | 2_4:+47460387 | None:intergenic |
| AGAATGGAAATTGGGTGATA+GGG | 0.514805 | 2_4:-47460072 | Msa0331540:CDS |
| GGAAGGAGGCTTATTACAGC+GGG | 0.521625 | 2_4:-47460038 | Msa0331540:CDS |
| GTCACTTTGATAAATAGAAA+CGG | 0.522150 | 2_4:-47460248 | Msa0331540:CDS |
| GTCGTCCTCTTGAGAGTGGC+CGG | 0.536921 | 2_4:-47460313 | Msa0331540:CDS |
| CTTATTACAGCGGGGAGTGA+TGG | 0.543645 | 2_4:-47460029 | Msa0331540:CDS |
| TGGTATTAATAATGTTCTCA+AGG | 0.548464 | 2_4:-47459862 | Msa0331540:CDS |
| ATTGTGGACAATCTACAGAA+TGG | 0.552740 | 2_4:-47460088 | Msa0331540:CDS |
| TCTCAAGGTTAATGTTCTCA+AGG | 0.553729 | 2_4:-47459847 | Msa0331540:CDS |
| ACGGTTAATTGCGGTACTGT+TGG | 0.557530 | 2_4:-47459924 | Msa0331540:CDS |
| ACTGTATCTTCTGTTGCCAT+AGG | 0.571927 | 2_4:+47460158 | None:intergenic |
| GGTTCATGCCCTTTATATGT+GGG | 0.576927 | 2_4:-47460227 | Msa0331540:CDS |
| ACCGCAATTAACCGTTTCCG+AGG | 0.585521 | 2_4:+47459932 | None:intergenic |
| CGGAAGGAGGCTTATTACAG+CGG | 0.595232 | 2_4:-47460039 | Msa0331540:CDS |
| ATAGGGACAATAGGAGCGGA+AGG | 0.600182 | 2_4:-47460055 | Msa0331540:CDS |
| AAAGCCATAACATAAGGCTA+AGG | 0.601835 | 2_4:+47460393 | None:intergenic |
| TACTTCCGGCCACTCTCAAG+AGG | 0.616975 | 2_4:+47460308 | None:intergenic |
| TTCTATTTATCAAAGTGACA+CGG | 0.619288 | 2_4:+47460252 | None:intergenic |
| ACACGTCGTCCTCTTGAGAG+TGG | 0.635863 | 2_4:-47460317 | Msa0331540:CDS |
| AAAACACCTTCAATTCCAAG+TGG | 0.642111 | 2_4:+47459981 | None:intergenic |
| CCGCAATTAACCGTTTCCGA+GGG | 0.650030 | 2_4:+47459933 | None:intergenic |
| CCCTCGGAAACGGTTAATTG+CGG | 0.663767 | 2_4:-47459933 | Msa0331540:CDS |
| GAAACTACAGATATTGGACA+AGG | 0.666365 | 2_4:-47460200 | Msa0331540:CDS |
| GGGACAATAGGAGCGGAAGG+AGG | 0.666908 | 2_4:-47460052 | Msa0331540:CDS |
| GGTGATAGGGACAATAGGAG+CGG | 0.692836 | 2_4:-47460059 | Msa0331540:CDS |
| TCAGATGTACCCGATATCGG+AGG | 0.696816 | 2_4:-47460275 | Msa0331540:CDS |
| AAACTACAGATATTGGACAA+GGG | 0.717751 | 2_4:-47460199 | Msa0331540:CDS |
| GAAGGAGGCTTATTACAGCG+GGG | 0.754937 | 2_4:-47460037 | Msa0331540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGGTAATTATAATATT+AGG | - | chr2_4:47460287-47460306 | Msa0331540:CDS | 10.0% |
| !!! | TGAAAATGGTAAGATTTTAT+TGG | - | chr2_4:47460357-47460376 | Msa0331540:CDS | 20.0% |
| ! | TTCTATTTATCAAAGTGACA+CGG | + | chr2_4:47460000-47460019 | None:intergenic | 25.0% |
| !! | GTCACTTTGATAAATAGAAA+CGG | - | chr2_4:47460001-47460020 | Msa0331540:CDS | 25.0% |
| !!! | ATCAGTTATTTTTACTCCTA+TGG | - | chr2_4:47460075-47460094 | Msa0331540:CDS | 25.0% |
| ! | TGGTATTAATAATGTTCTCA+AGG | - | chr2_4:47460387-47460406 | Msa0331540:CDS | 25.0% |
| TCATGAAAAGCCATAACATA+AGG | + | chr2_4:47459865-47459884 | None:intergenic | 30.0% | |
| ! | TCAAGAACTTCTTCATTTTC+AGG | + | chr2_4:47459908-47459927 | None:intergenic | 30.0% |
| CTGATCTTATGTAATACTTC+CGG | + | chr2_4:47459958-47459977 | None:intergenic | 30.0% | |
| TTTCTTGACCCACATATAAA+GGG | + | chr2_4:47460033-47460052 | None:intergenic | 30.0% | |
| AAACTACAGATATTGGACAA+GGG | - | chr2_4:47460050-47460069 | Msa0331540:CDS | 30.0% | |
| AACAGAAGATACAGTTGTTA+AGG | - | chr2_4:47460099-47460118 | Msa0331540:CDS | 30.0% | |
| ATACAGTTGTTAAGGTGAAT+AGG | - | chr2_4:47460107-47460126 | Msa0331540:CDS | 30.0% | |
| TACAGTTGTTAAGGTGAATA+GGG | - | chr2_4:47460108-47460127 | Msa0331540:CDS | 30.0% | |
| ! | TAAGGTGAATAGGGATTTTA+AGG | - | chr2_4:47460117-47460136 | Msa0331540:CDS | 30.0% |
| ! | TTTTCAGCTTCTTCAAATTG+TGG | - | chr2_4:47460145-47460164 | Msa0331540:CDS | 30.0% |
| ACAATCTACAGAATGGAAAT+TGG | - | chr2_4:47460168-47460187 | Msa0331540:CDS | 30.0% | |
| CAATCTACAGAATGGAAATT+GGG | - | chr2_4:47460169-47460188 | Msa0331540:CDS | 30.0% | |
| !! | TAATATTAGGTTTTGTCCCT+CGG | - | chr2_4:47460300-47460319 | Msa0331540:CDS | 30.0% |
| !! | GTTGGTAATTTGCATGAAAA+TGG | - | chr2_4:47460343-47460362 | Msa0331540:CDS | 30.0% |
| !!! | TGGTAAGATTTTATTGGCTT+TGG | - | chr2_4:47460363-47460382 | Msa0331540:CDS | 30.0% |
| !!! | AAGATTTTATTGGCTTTGGA+TGG | - | chr2_4:47460367-47460386 | Msa0331540:CDS | 30.0% |
| AAAGCCATAACATAAGGCTA+AGG | + | chr2_4:47459859-47459878 | None:intergenic | 35.0% | |
| !!! | TTTTCAGGTTGTGCTAATGT+TGG | + | chr2_4:47459893-47459912 | None:intergenic | 35.0% |
| GTTTCTTGACCCACATATAA+AGG | + | chr2_4:47460034-47460053 | None:intergenic | 35.0% | |
| GGTCAAGAAACTACAGATAT+TGG | - | chr2_4:47460043-47460062 | Msa0331540:CDS | 35.0% | |
| GAAACTACAGATATTGGACA+AGG | - | chr2_4:47460049-47460068 | Msa0331540:CDS | 35.0% | |
| ATTGTGGACAATCTACAGAA+TGG | - | chr2_4:47460161-47460180 | Msa0331540:CDS | 35.0% | |
| AGAATGGAAATTGGGTGATA+GGG | - | chr2_4:47460177-47460196 | Msa0331540:CDS | 35.0% | |
| !! | AGAATTTTGAAGACTCCACT+TGG | - | chr2_4:47460253-47460272 | Msa0331540:CDS | 35.0% |
| AAAACACCTTCAATTCCAAG+TGG | + | chr2_4:47460271-47460290 | None:intergenic | 35.0% | |
| !!! | CTTGGAATTGAAGGTGTTTT+AGG | - | chr2_4:47460271-47460290 | Msa0331540:CDS | 35.0% |
| TCTCAAGGTTAATGTTCTCA+AGG | - | chr2_4:47460402-47460421 | Msa0331540:CDS | 35.0% | |
| AAGGTTAATGTTCTCAAGGT+TGG | - | chr2_4:47460406-47460425 | Msa0331540:CDS | 35.0% | |
| AGGTTAATGTTCTCAAGGTT+GGG | - | chr2_4:47460407-47460426 | Msa0331540:CDS | 35.0% | |
| !! | CAAGCCTTAGCCTTATGTTA+TGG | - | chr2_4:47459852-47459871 | Msa0331540:CDS | 40.0% |
| AGGTTGTGCTAATGTTGGTA+TGG | + | chr2_4:47459888-47459907 | None:intergenic | 40.0% | |
| AGATCAGATGTACCCGATAT+CGG | - | chr2_4:47459971-47459990 | Msa0331540:CDS | 40.0% | |
| GGTTCATGCCCTTTATATGT+GGG | - | chr2_4:47460022-47460041 | Msa0331540:CDS | 40.0% | |
| ACTGTATCTTCTGTTGCCAT+AGG | + | chr2_4:47460094-47460113 | None:intergenic | 40.0% | |
| CAGAATGGAAATTGGGTGAT+AGG | - | chr2_4:47460176-47460195 | Msa0331540:CDS | 40.0% | |
| AATTGGGTGATAGGGACAAT+AGG | - | chr2_4:47460185-47460204 | Msa0331540:CDS | 40.0% | |
| AAGACTCCACTTGGAATTGA+AGG | - | chr2_4:47460262-47460281 | Msa0331540:CDS | 40.0% | |
| CGGTTCATGCCCTTTATATG+TGG | - | chr2_4:47460021-47460040 | Msa0331540:CDS | 45.0% | |
| !! | TAGGTTTTGTCCCTCGGAAA+CGG | - | chr2_4:47460306-47460325 | Msa0331540:CDS | 45.0% |
| ACGGTTAATTGCGGTACTGT+TGG | - | chr2_4:47460325-47460344 | Msa0331540:CDS | 45.0% | |
| TCAGATGTACCCGATATCGG+AGG | - | chr2_4:47459974-47459993 | Msa0331540:CDS | 50.0% | |
| GGTGATAGGGACAATAGGAG+CGG | - | chr2_4:47460190-47460209 | Msa0331540:CDS | 50.0% | |
| ATAGGGACAATAGGAGCGGA+AGG | - | chr2_4:47460194-47460213 | Msa0331540:CDS | 50.0% | |
| CGGAAGGAGGCTTATTACAG+CGG | - | chr2_4:47460210-47460229 | Msa0331540:CDS | 50.0% | |
| GGAAGGAGGCTTATTACAGC+GGG | - | chr2_4:47460211-47460230 | Msa0331540:CDS | 50.0% | |
| GAAGGAGGCTTATTACAGCG+GGG | - | chr2_4:47460212-47460231 | Msa0331540:CDS | 50.0% | |
| CTTATTACAGCGGGGAGTGA+TGG | - | chr2_4:47460220-47460239 | Msa0331540:CDS | 50.0% | |
| CCGCAATTAACCGTTTCCGA+GGG | + | chr2_4:47460319-47460338 | None:intergenic | 50.0% | |
| CCCTCGGAAACGGTTAATTG+CGG | - | chr2_4:47460316-47460335 | Msa0331540:CDS | 50.0% | |
| ACCGCAATTAACCGTTTCCG+AGG | + | chr2_4:47460320-47460339 | None:intergenic | 50.0% | |
| ACACGTCGTCCTCTTGAGAG+TGG | - | chr2_4:47459932-47459951 | Msa0331540:CDS | 55.0% | |
| TACTTCCGGCCACTCTCAAG+AGG | + | chr2_4:47459944-47459963 | None:intergenic | 55.0% | |
| AGTGACACGGCCTCCGATAT+CGG | + | chr2_4:47459987-47460006 | None:intergenic | 55.0% | |
| GTCGTCCTCTTGAGAGTGGC+CGG | - | chr2_4:47459936-47459955 | Msa0331540:CDS | 60.0% | |
| GTGACACGGCCTCCGATATC+GGG | + | chr2_4:47459986-47460005 | None:intergenic | 60.0% | |
| GGGACAATAGGAGCGGAAGG+AGG | - | chr2_4:47460197-47460216 | Msa0331540:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 47459827 | 47460444 | 47459827 | ID=Msa0331540;Name=Msa0331540 |
| chr2_4 | mRNA | 47459827 | 47460444 | 47459827 | ID=Msa0331540-mRNA-1;Parent=Msa0331540;Name=Msa0331540-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|-1|0|1|-1|1|1|0|205 |
| chr2_4 | exon | 47459827 | 47460444 | 47459827 | ID=Msa0331540-mRNA-1:exon:14287;Parent=Msa0331540-mRNA-1 |
| chr2_4 | CDS | 47459827 | 47460444 | 47459827 | ID=Msa0331540-mRNA-1:cds;Parent=Msa0331540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
