Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331530 | XP_013464493.1 | 83.415 | 205 | 28 | 1 | 1 | 205 | 1 | 199 | 1.79e-116 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331530 | sp|G7LCV1|KI106_MEDTR | 47.291 | 203 | 83 | 6 | 1 | 188 | 1 | 194 | 2.98e-51 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036430 | Msa0331530 | 0.815188 | 1.050735e-51 | -8.615850e-47 |
| Msa0084500 | Msa0331530 | 0.828503 | 8.672180e-55 | -8.615850e-47 |
| Msa0130570 | Msa0331530 | 0.825264 | 5.152675e-54 | -8.615850e-47 |
| Msa0176470 | Msa0331530 | 0.835515 | 1.604448e-56 | -8.615850e-47 |
| Msa0191040 | Msa0331530 | 0.824660 | 7.154866e-54 | -8.615850e-47 |
| Msa0194380 | Msa0331530 | 0.834318 | 3.212356e-56 | -8.615850e-47 |
| Msa0206800 | Msa0331530 | 0.832104 | 1.143418e-55 | -8.615850e-47 |
| Msa0219190 | Msa0331530 | 0.819724 | 9.991863e-53 | -8.615850e-47 |
| Msa0233340 | Msa0331530 | 0.824220 | 9.081674e-54 | -8.615850e-47 |
| Msa0236110 | Msa0331530 | 0.840752 | 7.197592e-58 | -8.615850e-47 |
| Msa0273990 | Msa0331530 | 0.827390 | 1.606126e-54 | -8.615850e-47 |
| Msa0288190 | Msa0331530 | 0.806358 | 8.550272e-50 | -8.615850e-47 |
| Msa0288200 | Msa0331530 | 0.831283 | 1.822079e-55 | -8.615850e-47 |
| Msa0298240 | Msa0331530 | 0.832469 | 9.289770e-56 | -8.615850e-47 |
| Msa0311690 | Msa0331530 | 0.822794 | 1.957934e-53 | -8.615850e-47 |
| Msa0314630 | Msa0331530 | 0.845799 | 3.240577e-59 | -8.615850e-47 |
| Msa0322830 | Msa0331530 | 0.800727 | 1.258385e-48 | -8.615850e-47 |
| Msa0322860 | Msa0331530 | 0.806303 | 8.783518e-50 | -8.615850e-47 |
| Msa0326540 | Msa0331530 | 0.812758 | 3.608268e-51 | -8.615850e-47 |
| Msa0331530 | Msa0331540 | 0.908740 | 1.228701e-81 | -8.615850e-47 |
| Msa0331530 | Msa0351770 | 0.817220 | 3.691153e-52 | -8.615850e-47 |
| Msa0331530 | Msa0423100 | 0.800130 | 1.664989e-48 | -8.615850e-47 |
| Msa0331530 | Msa0441590 | 0.814676 | 1.364467e-51 | -8.615850e-47 |
| Msa0331530 | Msa0469260 | 0.825809 | 3.827514e-54 | -8.615850e-47 |
| Msa0331530 | Msa0520510 | 0.814658 | 1.377012e-51 | -8.615850e-47 |
| Msa0331530 | Msa0742180 | 0.801531 | 8.618732e-49 | -8.615850e-47 |
| Msa0331530 | Msa0823400 | 0.807007 | 6.238604e-50 | -8.615850e-47 |
| Msa0331530 | Msa0885060 | 0.811060 | 8.457077e-51 | -8.615850e-47 |
| Msa0331530 | Msa0946210 | 0.809840 | 1.550677e-50 | -8.615850e-47 |
| Msa0331530 | Msa0979510 | 0.836423 | 9.440519e-57 | -8.615850e-47 |
| Msa0331530 | Msa1033560 | 0.802334 | 5.892719e-49 | -8.615850e-47 |
| Msa0331530 | Msa1042670 | 0.805855 | 1.091091e-49 | -8.615850e-47 |
| Msa0331530 | Msa1113850 | 0.827311 | 1.678244e-54 | -8.615850e-47 |
| Msa0331530 | Msa1145020 | 0.804860 | 1.763724e-49 | -8.615850e-47 |
| Msa0331530 | Msa1169990 | 0.823379 | 1.429610e-53 | -8.615850e-47 |
| Msa0331530 | Msa1179520 | 0.810040 | 1.404430e-50 | -8.615850e-47 |
| Msa0331530 | Msa1292040 | 0.802261 | 6.101711e-49 | -8.615850e-47 |
| Msa0331530 | Msa1345420 | 0.831953 | 1.246272e-55 | -8.615850e-47 |
| Msa0331530 | Msa1420060 | 0.822961 | 1.790286e-53 | -8.615850e-47 |
| Msa0331530 | Msa1421550 | 0.815994 | 6.949409e-52 | -8.615850e-47 |
| Msa0331530 | Msa1435480 | 0.839134 | 1.900586e-57 | -8.615850e-47 |
| Msa0331530 | Msa1442630 | 0.837371 | 5.406021e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331530 | MtrunA17_Chr2g0314431 | 83.415 | 205 | 28 | 1 | 1 | 205 | 1 | 199 | 1.65e-120 | 339 |
| Msa0331530 | MtrunA17_Chr2g0314441 | 65.714 | 210 | 55 | 4 | 1 | 205 | 1 | 198 | 2.75e-89 | 260 |
| Msa0331530 | MtrunA17_Chr8g0359161 | 47.291 | 203 | 83 | 6 | 1 | 188 | 1 | 194 | 2.19e-52 | 167 |
| Msa0331530 | MtrunA17_Chr4g0022761 | 45.960 | 198 | 87 | 6 | 1 | 188 | 1 | 188 | 9.68e-49 | 157 |
| Msa0331530 | MtrunA17_Chr1g0173431 | 44.776 | 201 | 88 | 6 | 1 | 188 | 1 | 191 | 3.10e-48 | 156 |
| Msa0331530 | MtrunA17_Chr3g0082671 | 42.857 | 203 | 91 | 6 | 1 | 188 | 1 | 193 | 6.72e-47 | 153 |
| Msa0331530 | MtrunA17_Chr4g0022751 | 43.564 | 202 | 90 | 6 | 1 | 188 | 1 | 192 | 9.85e-47 | 152 |
| Msa0331530 | MtrunA17_Chr8g0359111 | 43.564 | 202 | 90 | 6 | 1 | 188 | 1 | 192 | 2.61e-46 | 151 |
| Msa0331530 | MtrunA17_Chr3g0082661 | 42.857 | 203 | 91 | 6 | 1 | 188 | 1 | 193 | 7.30e-46 | 150 |
| Msa0331530 | MtrunA17_Chr3g0082641 | 42.365 | 203 | 92 | 6 | 1 | 188 | 1 | 193 | 1.28e-45 | 150 |
| Msa0331530 | MtrunA17_Chr3g0082681 | 42.365 | 203 | 92 | 6 | 1 | 188 | 1 | 193 | 4.27e-45 | 148 |
| Msa0331530 | MtrunA17_Chr3g0082651 | 42.365 | 203 | 92 | 6 | 1 | 188 | 1 | 193 | 3.50e-44 | 146 |
| Msa0331530 | MtrunA17_Chr7g0269461 | 43.069 | 202 | 89 | 8 | 1 | 188 | 1 | 190 | 4.96e-42 | 140 |
| Msa0331530 | MtrunA17_Chr6g0481911 | 32.727 | 165 | 103 | 5 | 14 | 173 | 10 | 171 | 5.38e-18 | 78.6 |
| Msa0331530 | MtrunA17_Chr6g0481941 | 30.732 | 205 | 120 | 8 | 14 | 205 | 10 | 205 | 4.06e-16 | 73.6 |
| Msa0331530 | MtrunA17_Chr6g0482041 | 31.100 | 209 | 108 | 9 | 8 | 189 | 4 | 203 | 4.66e-13 | 65.5 |
| Msa0331530 | MtrunA17_Chr6g0477751 | 30.055 | 183 | 102 | 8 | 8 | 174 | 4 | 176 | 1.62e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331530 | AT1G17860.1 | 29.187 | 209 | 120 | 8 | 11 | 205 | 1 | 195 | 5.78e-14 | 67.8 |
Find 52 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGTAATTTGCATGAAAA+TGG | 0.244897 | 2_4:-47310323 | Msa0331530:CDS |
| ACAATCTACGGAATGGAAAT+TGG | 0.250660 | 2_4:-47310498 | Msa0331530:CDS |
| AGTGACACGGCCTCCGATAT+CGG | 0.290496 | 2_4:+47310682 | None:intergenic |
| GTTTCTTGACCCACATATAA+AGG | 0.297981 | 2_4:+47310635 | None:intergenic |
| CGGAATGGAAATTGGGTGAT+AGG | 0.325123 | 2_4:-47310490 | Msa0331530:CDS |
| ATACAGTTGTTAAGGTGAAT+AGG | 0.332362 | 2_4:-47310559 | Msa0331530:CDS |
| CAAGCCTTAGCCTTATGTTA+TGG | 0.345426 | 2_4:-47310814 | Msa0331530:CDS |
| GGTCAAGAAACTACAGATAT+TGG | 0.348677 | 2_4:-47310623 | Msa0331530:CDS |
| TACAGTTGTTAAGGTGAATA+GGG | 0.357658 | 2_4:-47310558 | Msa0331530:CDS |
| AAGACTCCACTTGGAATTGA+AGG | 0.410273 | 2_4:-47310404 | Msa0331530:CDS |
| AAGGTTAATGTTCTCAAGGT+TGG | 0.412184 | 2_4:-47310260 | Msa0331530:CDS |
| AGGTTAATGTTCTCAAGGTT+GGG | 0.412594 | 2_4:-47310259 | Msa0331530:CDS |
| AACAGAAGATACAGTTGTTA+AGG | 0.418077 | 2_4:-47310567 | Msa0331530:CDS |
| CGGTTCATGCCCTTTATATG+TGG | 0.431349 | 2_4:-47310645 | Msa0331530:CDS |
| CTGATCTTATGTAATACTTC+CGG | 0.434280 | 2_4:+47310711 | None:intergenic |
| TTTCTTGACCCACATATAAA+GGG | 0.438692 | 2_4:+47310636 | None:intergenic |
| AATTGGGTGATAGGGACAAT+AGG | 0.441749 | 2_4:-47310481 | Msa0331530:CDS |
| GTGACACGGCCTCCGATATC+GGG | 0.449326 | 2_4:+47310683 | None:intergenic |
| CAATCTACGGAATGGAAATT+GGG | 0.450660 | 2_4:-47310497 | Msa0331530:CDS |
| TTCAAGTTGTGGACAATCTA+CGG | 0.461337 | 2_4:-47310510 | Msa0331530:CDS |
| AGATCAGATGTACCCGATAT+CGG | 0.472186 | 2_4:-47310695 | Msa0331530:CDS |
| TTTGATCAATCTTGTTGTCA+TGG | 0.481185 | 2_4:+47310841 | None:intergenic |
| AGGTTGTGCTAATGTTGGTA+TGG | 0.501409 | 2_4:+47310781 | None:intergenic |
| TCATGAAAAGCCATAACATA+AGG | 0.507153 | 2_4:+47310804 | None:intergenic |
| ACGGTTAATTGCGGTACGGT+TGG | 0.512688 | 2_4:-47310341 | Msa0331530:CDS |
| GGAAGGAGGCTTATTACAGC+GGG | 0.513610 | 2_4:-47310455 | Msa0331530:CDS |
| GTCACTTTGATAAATAGAAA+CGG | 0.522150 | 2_4:-47310665 | Msa0331530:CDS |
| GGTGATAGGGACAATAGGAA+TGG | 0.534005 | 2_4:-47310476 | Msa0331530:CDS |
| GGAATGGAAATTGGGTGATA+GGG | 0.534497 | 2_4:-47310489 | Msa0331530:CDS |
| GTCGTCCTCTTGAGAGTGGC+CGG | 0.536921 | 2_4:-47310730 | Msa0331530:CDS |
| CTTATTACAGCGGGGAGTGA+TGG | 0.543645 | 2_4:-47310446 | Msa0331530:CDS |
| TGGTATTAATAATGTTCTCA+AGG | 0.548464 | 2_4:-47310279 | Msa0331530:CDS |
| TCTCAAGGTTAATGTTCTCA+AGG | 0.553729 | 2_4:-47310264 | Msa0331530:CDS |
| ACTGTATCTTCTGTTGCCAT+AGG | 0.571927 | 2_4:+47310575 | None:intergenic |
| ATAGGGACAATAGGAATGGA+AGG | 0.576527 | 2_4:-47310472 | Msa0331530:CDS |
| GGTTCATGCCCTTTATATGT+GGG | 0.576927 | 2_4:-47310644 | Msa0331530:CDS |
| ACCGCAATTAACCGTTTCCG+AGG | 0.595491 | 2_4:+47310349 | None:intergenic |
| GTTGTGGACAATCTACGGAA+TGG | 0.597660 | 2_4:-47310505 | Msa0331530:CDS |
| AAAGCCATAACATAAGGCTA+AGG | 0.601835 | 2_4:+47310810 | None:intergenic |
| TGGAAGGAGGCTTATTACAG+CGG | 0.611644 | 2_4:-47310456 | Msa0331530:CDS |
| TACTTCCGGCCACTCTCAAG+AGG | 0.616975 | 2_4:+47310725 | None:intergenic |
| TTCTATTTATCAAAGTGACA+CGG | 0.619288 | 2_4:+47310669 | None:intergenic |
| ACACGTCGTCCTCTTGAGAG+TGG | 0.635863 | 2_4:-47310734 | Msa0331530:CDS |
| CCGCAATTAACCGTTTCCGA+GGG | 0.637522 | 2_4:+47310350 | None:intergenic |
| AAAACACCTTCAATTCCAAG+TGG | 0.642111 | 2_4:+47310398 | None:intergenic |
| CCCTCGGAAACGGTTAATTG+CGG | 0.663767 | 2_4:-47310350 | Msa0331530:CDS |
| GAAACTACAGATATTGGACA+AGG | 0.666365 | 2_4:-47310617 | Msa0331530:CDS |
| GGAAACGGTTAATTGCGGTA+CGG | 0.670786 | 2_4:-47310345 | Msa0331530:CDS |
| TCAGATGTACCCGATATCGG+AGG | 0.696816 | 2_4:-47310692 | Msa0331530:CDS |
| GGGACAATAGGAATGGAAGG+AGG | 0.712776 | 2_4:-47310469 | Msa0331530:CDS |
| AAACTACAGATATTGGACAA+GGG | 0.717751 | 2_4:-47310616 | Msa0331530:CDS |
| GAAGGAGGCTTATTACAGCG+GGG | 0.754937 | 2_4:-47310454 | Msa0331530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGGTAATTATAATATT+AGG | - | chr2_4:47310704-47310723 | Msa0331530:CDS | 10.0% |
| !!! | TGAAAATGGTAAGATTTTAT+TGG | - | chr2_4:47310774-47310793 | Msa0331530:CDS | 20.0% |
| ! | TTCTATTTATCAAAGTGACA+CGG | + | chr2_4:47310417-47310436 | None:intergenic | 25.0% |
| !! | GTCACTTTGATAAATAGAAA+CGG | - | chr2_4:47310418-47310437 | Msa0331530:CDS | 25.0% |
| !!! | ATCAGTTATTTTTACTCCTA+TGG | - | chr2_4:47310492-47310511 | Msa0331530:CDS | 25.0% |
| ! | TGGTATTAATAATGTTCTCA+AGG | - | chr2_4:47310804-47310823 | Msa0331530:CDS | 25.0% |
| TCATGAAAAGCCATAACATA+AGG | + | chr2_4:47310282-47310301 | None:intergenic | 30.0% | |
| ! | TCAAGAACTTCTTCATTTTC+AGG | + | chr2_4:47310325-47310344 | None:intergenic | 30.0% |
| CTGATCTTATGTAATACTTC+CGG | + | chr2_4:47310375-47310394 | None:intergenic | 30.0% | |
| TTTCTTGACCCACATATAAA+GGG | + | chr2_4:47310450-47310469 | None:intergenic | 30.0% | |
| AAACTACAGATATTGGACAA+GGG | - | chr2_4:47310467-47310486 | Msa0331530:CDS | 30.0% | |
| AACAGAAGATACAGTTGTTA+AGG | - | chr2_4:47310516-47310535 | Msa0331530:CDS | 30.0% | |
| ATACAGTTGTTAAGGTGAAT+AGG | - | chr2_4:47310524-47310543 | Msa0331530:CDS | 30.0% | |
| TACAGTTGTTAAGGTGAATA+GGG | - | chr2_4:47310525-47310544 | Msa0331530:CDS | 30.0% | |
| ! | TAAGGTGAATAGGGATTTTA+AGG | - | chr2_4:47310534-47310553 | Msa0331530:CDS | 30.0% |
| !! | TAATATTAGGTTTTGTCCCT+CGG | - | chr2_4:47310717-47310736 | Msa0331530:CDS | 30.0% |
| !! | GTTGGTAATTTGCATGAAAA+TGG | - | chr2_4:47310760-47310779 | Msa0331530:CDS | 30.0% |
| !!! | TGGTAAGATTTTATTGGCTT+TGG | - | chr2_4:47310780-47310799 | Msa0331530:CDS | 30.0% |
| !!! | AAGATTTTATTGGCTTTGGA+TGG | - | chr2_4:47310784-47310803 | Msa0331530:CDS | 30.0% |
| AAAGCCATAACATAAGGCTA+AGG | + | chr2_4:47310276-47310295 | None:intergenic | 35.0% | |
| !!! | TTTTCAGGTTGTGCTAATGT+TGG | + | chr2_4:47310310-47310329 | None:intergenic | 35.0% |
| GTTTCTTGACCCACATATAA+AGG | + | chr2_4:47310451-47310470 | None:intergenic | 35.0% | |
| GGTCAAGAAACTACAGATAT+TGG | - | chr2_4:47310460-47310479 | Msa0331530:CDS | 35.0% | |
| GAAACTACAGATATTGGACA+AGG | - | chr2_4:47310466-47310485 | Msa0331530:CDS | 35.0% | |
| !!! | TTTTCAGCTTCTTCAAGTTG+TGG | - | chr2_4:47310562-47310581 | Msa0331530:CDS | 35.0% |
| !! | TTCAAGTTGTGGACAATCTA+CGG | - | chr2_4:47310573-47310592 | Msa0331530:CDS | 35.0% |
| ACAATCTACGGAATGGAAAT+TGG | - | chr2_4:47310585-47310604 | Msa0331530:CDS | 35.0% | |
| CAATCTACGGAATGGAAATT+GGG | - | chr2_4:47310586-47310605 | Msa0331530:CDS | 35.0% | |
| !! | AGAATTTTGAAGACTCCACT+TGG | - | chr2_4:47310670-47310689 | Msa0331530:CDS | 35.0% |
| AAAACACCTTCAATTCCAAG+TGG | + | chr2_4:47310688-47310707 | None:intergenic | 35.0% | |
| !!! | CTTGGAATTGAAGGTGTTTT+AGG | - | chr2_4:47310688-47310707 | Msa0331530:CDS | 35.0% |
| TCTCAAGGTTAATGTTCTCA+AGG | - | chr2_4:47310819-47310838 | Msa0331530:CDS | 35.0% | |
| AAGGTTAATGTTCTCAAGGT+TGG | - | chr2_4:47310823-47310842 | Msa0331530:CDS | 35.0% | |
| AGGTTAATGTTCTCAAGGTT+GGG | - | chr2_4:47310824-47310843 | Msa0331530:CDS | 35.0% | |
| !! | CAAGCCTTAGCCTTATGTTA+TGG | - | chr2_4:47310269-47310288 | Msa0331530:CDS | 40.0% |
| AGGTTGTGCTAATGTTGGTA+TGG | + | chr2_4:47310305-47310324 | None:intergenic | 40.0% | |
| AGATCAGATGTACCCGATAT+CGG | - | chr2_4:47310388-47310407 | Msa0331530:CDS | 40.0% | |
| GGTTCATGCCCTTTATATGT+GGG | - | chr2_4:47310439-47310458 | Msa0331530:CDS | 40.0% | |
| ACTGTATCTTCTGTTGCCAT+AGG | + | chr2_4:47310511-47310530 | None:intergenic | 40.0% | |
| GGAATGGAAATTGGGTGATA+GGG | - | chr2_4:47310594-47310613 | Msa0331530:CDS | 40.0% | |
| AATTGGGTGATAGGGACAAT+AGG | - | chr2_4:47310602-47310621 | Msa0331530:CDS | 40.0% | |
| ATAGGGACAATAGGAATGGA+AGG | - | chr2_4:47310611-47310630 | Msa0331530:CDS | 40.0% | |
| AAGACTCCACTTGGAATTGA+AGG | - | chr2_4:47310679-47310698 | Msa0331530:CDS | 40.0% | |
| CGGTTCATGCCCTTTATATG+TGG | - | chr2_4:47310438-47310457 | Msa0331530:CDS | 45.0% | |
| GTTGTGGACAATCTACGGAA+TGG | - | chr2_4:47310578-47310597 | Msa0331530:CDS | 45.0% | |
| CGGAATGGAAATTGGGTGAT+AGG | - | chr2_4:47310593-47310612 | Msa0331530:CDS | 45.0% | |
| GGTGATAGGGACAATAGGAA+TGG | - | chr2_4:47310607-47310626 | Msa0331530:CDS | 45.0% | |
| TGGAAGGAGGCTTATTACAG+CGG | - | chr2_4:47310627-47310646 | Msa0331530:CDS | 45.0% | |
| !! | TAGGTTTTGTCCCTCGGAAA+CGG | - | chr2_4:47310723-47310742 | Msa0331530:CDS | 45.0% |
| GGAAACGGTTAATTGCGGTA+CGG | - | chr2_4:47310738-47310757 | Msa0331530:CDS | 45.0% | |
| TCAGATGTACCCGATATCGG+AGG | - | chr2_4:47310391-47310410 | Msa0331530:CDS | 50.0% | |
| GGGACAATAGGAATGGAAGG+AGG | - | chr2_4:47310614-47310633 | Msa0331530:CDS | 50.0% | |
| GGAAGGAGGCTTATTACAGC+GGG | - | chr2_4:47310628-47310647 | Msa0331530:CDS | 50.0% | |
| GAAGGAGGCTTATTACAGCG+GGG | - | chr2_4:47310629-47310648 | Msa0331530:CDS | 50.0% | |
| CTTATTACAGCGGGGAGTGA+TGG | - | chr2_4:47310637-47310656 | Msa0331530:CDS | 50.0% | |
| CCGCAATTAACCGTTTCCGA+GGG | + | chr2_4:47310736-47310755 | None:intergenic | 50.0% | |
| CCCTCGGAAACGGTTAATTG+CGG | - | chr2_4:47310733-47310752 | Msa0331530:CDS | 50.0% | |
| ACCGCAATTAACCGTTTCCG+AGG | + | chr2_4:47310737-47310756 | None:intergenic | 50.0% | |
| ACGGTTAATTGCGGTACGGT+TGG | - | chr2_4:47310742-47310761 | Msa0331530:CDS | 50.0% | |
| ACACGTCGTCCTCTTGAGAG+TGG | - | chr2_4:47310349-47310368 | Msa0331530:CDS | 55.0% | |
| TACTTCCGGCCACTCTCAAG+AGG | + | chr2_4:47310361-47310380 | None:intergenic | 55.0% | |
| AGTGACACGGCCTCCGATAT+CGG | + | chr2_4:47310404-47310423 | None:intergenic | 55.0% | |
| GTCGTCCTCTTGAGAGTGGC+CGG | - | chr2_4:47310353-47310372 | Msa0331530:CDS | 60.0% | |
| GTGACACGGCCTCCGATATC+GGG | + | chr2_4:47310403-47310422 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 47310244 | 47310861 | 47310244 | ID=Msa0331530;Name=Msa0331530 |
| chr2_4 | mRNA | 47310244 | 47310861 | 47310244 | ID=Msa0331530-mRNA-1;Parent=Msa0331530;Name=Msa0331530-mRNA-1;_AED=0.19;_eAED=0.20;_QI=0|-1|0|1|-1|1|1|0|205 |
| chr2_4 | exon | 47310244 | 47310861 | 47310244 | ID=Msa0331530-mRNA-1:exon:14286;Parent=Msa0331530-mRNA-1 |
| chr2_4 | CDS | 47310244 | 47310861 | 47310244 | ID=Msa0331530-mRNA-1:cds;Parent=Msa0331530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
