Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213800 | XP_003609196.1 | 99.216 | 510 | 4 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1047 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213800 | sp|Q93YV6|2A5K_ARATH | 62.451 | 506 | 184 | 3 | 1 | 506 | 1 | 500 | 0.0 | 673 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626450 | Msa1213800 | 0.817292 | 3.557123e-52 | -8.615850e-47 |
| Msa0626490 | Msa1213800 | 0.815342 | 9.709418e-52 | -8.615850e-47 |
| Msa0664600 | Msa1213800 | 0.816650 | 4.958463e-52 | -8.615850e-47 |
| Msa0725000 | Msa1213800 | 0.827438 | 1.564423e-54 | -8.615850e-47 |
| Msa0729100 | Msa1213800 | 0.810383 | 1.184877e-50 | -8.615850e-47 |
| Msa0765270 | Msa1213800 | 0.832283 | 1.032551e-55 | -8.615850e-47 |
| Msa0766930 | Msa1213800 | 0.806870 | 6.665980e-50 | -8.615850e-47 |
| Msa0788770 | Msa1213800 | 0.806457 | 8.150558e-50 | -8.615850e-47 |
| Msa0807280 | Msa1213800 | 0.819108 | 1.380781e-52 | -8.615850e-47 |
| Msa0807820 | Msa1213800 | 0.837188 | 6.024546e-57 | -8.615850e-47 |
| Msa0138360 | Msa1213800 | 0.836942 | 6.961750e-57 | -8.615850e-47 |
| Msa0144360 | Msa1213800 | 0.823404 | 1.410691e-53 | -8.615850e-47 |
| Msa0147980 | Msa1213800 | 0.822389 | 2.431881e-53 | -8.615850e-47 |
| Msa0221000 | Msa1213800 | 0.802089 | 6.619528e-49 | -8.615850e-47 |
| Msa0479200 | Msa1213800 | 0.807880 | 4.072200e-50 | -8.615850e-47 |
| Msa1034500 | Msa1213800 | 0.802318 | 5.938208e-49 | -8.615850e-47 |
| Msa1059960 | Msa1213800 | 0.808110 | 3.637318e-50 | -8.615850e-47 |
| Msa1105160 | Msa1213800 | 0.807210 | 5.649892e-50 | -8.615850e-47 |
| Msa0253290 | Msa1213800 | 0.805658 | 1.200162e-49 | -8.615850e-47 |
| Msa0300320 | Msa1213800 | 0.808536 | 2.951971e-50 | -8.615850e-47 |
| Msa1130890 | Msa1213800 | 0.840051 | 1.097050e-57 | -8.615850e-47 |
| Msa1130950 | Msa1213800 | 0.818890 | 1.547738e-52 | -8.615850e-47 |
| Msa1174530 | Msa1213800 | 0.822812 | 1.938791e-53 | -8.615850e-47 |
| Msa1205790 | Msa1213800 | 0.802984 | 4.327174e-49 | -8.615850e-47 |
| Msa1205830 | Msa1213800 | 0.804712 | 1.893427e-49 | -8.615850e-47 |
| Msa1213800 | Msa1235250 | 0.823638 | 1.243475e-53 | -8.615850e-47 |
| Msa1213800 | Msa1369150 | 0.814832 | 1.260190e-51 | -8.615850e-47 |
| Msa1213800 | Msa1371520 | 0.838941 | 2.132354e-57 | -8.615850e-47 |
| Msa1213800 | Msa1440960 | 0.819105 | 1.382691e-52 | -8.615850e-47 |
| Msa1213800 | Msa1443930 | 0.821616 | 3.673696e-53 | -8.615850e-47 |
| Msa1213800 | Msa1459460 | 0.809054 | 2.287382e-50 | -8.615850e-47 |
| Msa0527190 | Msa1213800 | 0.840373 | 9.044129e-58 | -8.615850e-47 |
| Msa0845110 | Msa1213800 | 0.830041 | 3.670614e-55 | -8.615850e-47 |
| Msa0856050 | Msa1213800 | 0.812841 | 3.461445e-51 | -8.615850e-47 |
| Msa0861510 | Msa1213800 | 0.806272 | 8.917726e-50 | -8.615850e-47 |
| Msa0866290 | Msa1213800 | 0.803337 | 3.657890e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213800 | MtrunA17_Chr4g0062821 | 99.216 | 510 | 4 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1047 |
| Msa1213800 | MtrunA17_Chr1g0148671 | 60.080 | 501 | 184 | 6 | 1 | 497 | 1 | 489 | 0.0 | 642 |
| Msa1213800 | MtrunA17_Chr3g0138441 | 59.438 | 498 | 188 | 6 | 1 | 491 | 1 | 491 | 0.0 | 627 |
| Msa1213800 | MtrunA17_Chr6g0458891 | 52.590 | 502 | 210 | 5 | 1 | 483 | 1 | 493 | 0.0 | 534 |
| Msa1213800 | MtrunA17_Chr3g0119261 | 50.838 | 537 | 232 | 4 | 1 | 508 | 1 | 534 | 0.0 | 532 |
| Msa1213800 | MtrunA17_Chr3g0123051 | 51.200 | 500 | 228 | 4 | 1 | 484 | 1 | 500 | 0.0 | 525 |
| Msa1213800 | MtrunA17_Chr7g0264871 | 51.738 | 489 | 208 | 7 | 11 | 496 | 3 | 466 | 0.0 | 517 |
| Msa1213800 | MtrunA17_Chr1g0180401 | 53.376 | 474 | 205 | 7 | 15 | 484 | 15 | 476 | 2.63e-176 | 504 |
| Msa1213800 | MtrunA17_Chr1g0210311 | 48.975 | 488 | 229 | 5 | 5 | 484 | 1 | 476 | 4.52e-171 | 491 |
| Msa1213800 | MtrunA17_Chr1g0211361 | 39.667 | 421 | 245 | 4 | 82 | 497 | 31 | 447 | 6.79e-111 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213800 | AT5G25510.1 | 62.451 | 506 | 184 | 3 | 1 | 506 | 1 | 500 | 0.0 | 673 |
| Msa1213800 | AT4G15415.1 | 54.949 | 495 | 213 | 4 | 1 | 485 | 1 | 495 | 0.0 | 555 |
| Msa1213800 | AT4G15415.4 | 54.949 | 495 | 213 | 4 | 1 | 485 | 1 | 495 | 0.0 | 555 |
| Msa1213800 | AT4G15415.2 | 54.949 | 495 | 213 | 4 | 1 | 485 | 1 | 495 | 0.0 | 555 |
| Msa1213800 | AT4G15415.5 | 54.949 | 495 | 213 | 4 | 1 | 485 | 1 | 495 | 0.0 | 555 |
| Msa1213800 | AT3G26020.2 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 546 |
| Msa1213800 | AT3G26020.5 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 546 |
| Msa1213800 | AT3G26020.1 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 546 |
| Msa1213800 | AT3G26020.6 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 546 |
| Msa1213800 | AT1G13460.2 | 60.870 | 414 | 159 | 1 | 77 | 487 | 75 | 488 | 0.0 | 544 |
| Msa1213800 | AT1G13460.1 | 60.870 | 414 | 159 | 1 | 77 | 487 | 75 | 488 | 0.0 | 544 |
| Msa1213800 | AT3G21650.1 | 53.269 | 520 | 204 | 5 | 1 | 485 | 1 | 516 | 0.0 | 543 |
| Msa1213800 | AT3G21650.2 | 53.269 | 520 | 204 | 5 | 1 | 485 | 1 | 516 | 0.0 | 543 |
| Msa1213800 | AT3G09880.1 | 52.918 | 497 | 226 | 3 | 1 | 494 | 1 | 492 | 0.0 | 528 |
| Msa1213800 | AT5G03470.1 | 51.434 | 488 | 225 | 4 | 1 | 482 | 1 | 482 | 0.0 | 522 |
| Msa1213800 | AT3G26030.1 | 50.710 | 493 | 218 | 9 | 1 | 486 | 1 | 475 | 1.34e-169 | 488 |
| Msa1213800 | AT3G26020.4 | 46.250 | 560 | 184 | 7 | 1 | 481 | 1 | 522 | 1.10e-159 | 464 |
| Msa1213800 | AT3G54930.2 | 51.942 | 412 | 193 | 1 | 78 | 484 | 82 | 493 | 2.24e-157 | 457 |
| Msa1213800 | AT3G54930.1 | 51.942 | 412 | 193 | 1 | 78 | 484 | 82 | 493 | 2.24e-157 | 457 |
| Msa1213800 | AT4G15415.3 | 56.281 | 398 | 164 | 4 | 1 | 388 | 1 | 398 | 2.54e-155 | 450 |
| Msa1213800 | AT3G26020.7 | 46.409 | 543 | 191 | 9 | 1 | 481 | 1 | 505 | 9.55e-153 | 446 |
| Msa1213800 | AT3G26020.8 | 46.409 | 543 | 191 | 9 | 1 | 481 | 1 | 505 | 9.55e-153 | 446 |
| Msa1213800 | AT3G26020.3 | 46.409 | 543 | 191 | 9 | 1 | 481 | 1 | 505 | 9.55e-153 | 446 |
| Msa1213800 | AT3G54930.3 | 52.215 | 316 | 146 | 1 | 78 | 388 | 82 | 397 | 1.07e-115 | 347 |
Find 136 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACAATTATTTGATTAA+AGG | 0.202013 | 8_1:-73977653 | Msa1213800:three_prime_UTR |
| CTAACAGATTTCCTTATAAA+AGG | 0.202511 | 8_1:+73979707 | None:intergenic |
| GAATCTGATGAGTCGGATTT+TGG | 0.207638 | 8_1:+73980397 | None:intergenic |
| GTAAATTTCACTTGGCATTT+AGG | 0.219408 | 8_1:+73977803 | None:intergenic |
| CTTTCTTTCACTCTCTCAAC+TGG | 0.243260 | 8_1:-73981277 | Msa1213800:five_prime_UTR |
| ACAGTTCTGCATAGAATCTA+TGG | 0.252421 | 8_1:-73979749 | Msa1213800:CDS |
| GGCAATAGTACTACTAGTTT+TGG | 0.252801 | 8_1:-73980358 | Msa1213800:CDS |
| TAATGGAATTGCTGAGCTTT+TGG | 0.252902 | 8_1:-73979645 | Msa1213800:CDS |
| ATGATAAATACCAATAGATT+TGG | 0.253333 | 8_1:+73979529 | None:intergenic |
| GAGTGAGTTGGAAGAGGTTT+TGG | 0.272535 | 8_1:-73979384 | Msa1213800:CDS |
| GATGTAGTAAAGAGAGAAAA+AGG | 0.279390 | 8_1:+73981383 | None:intergenic |
| GTGTGCAACCAATTTGTTTA+GGG | 0.286986 | 8_1:-73980002 | Msa1213800:CDS |
| GGAACAATTATTTGATTAAA+GGG | 0.287337 | 8_1:-73977652 | Msa1213800:three_prime_UTR |
| TGTTCTGTACAGTTCTTATC+AGG | 0.296622 | 8_1:+73980121 | None:intergenic |
| AACATTTAATTTGCTTGAAA+TGG | 0.301664 | 8_1:+73980303 | None:intergenic |
| TCATGAACATTAGCTCCTTT+TGG | 0.304127 | 8_1:+73979405 | None:intergenic |
| TTATGTTCTGAGTCAGGTTC+AGG | 0.305779 | 8_1:+73978536 | None:intergenic |
| ATTGGTTAGCTCAGTGATAA+AGG | 0.320886 | 8_1:-73979459 | Msa1213800:CDS |
| ATTATTTGATTAAAGGGAAT+TGG | 0.322857 | 8_1:-73977646 | Msa1213800:three_prime_UTR |
| TGTGTGCAACCAATTTGTTT+AGG | 0.324252 | 8_1:-73980003 | Msa1213800:CDS |
| CGCTGGTGGCGGCTTCTTCA+AGG | 0.337496 | 8_1:+73978398 | None:intergenic |
| GAATTGGATGCAGGTGTTAT+AGG | 0.346006 | 8_1:-73980481 | Msa1213800:intron |
| GATTCTGCAAAGAGTGATTC+TGG | 0.347501 | 8_1:-73980379 | Msa1213800:CDS |
| ACACCAGCATTCATGCTTGC+AGG | 0.350797 | 8_1:+73980253 | None:intergenic |
| CTATTACAATTTACATTCAC+TGG | 0.356357 | 8_1:-73977873 | Msa1213800:three_prime_UTR |
| TTGAAGATAGCACTGGCAAT+AGG | 0.363955 | 8_1:-73978212 | Msa1213800:three_prime_UTR |
| CGGAACGAGCTCATTTGTTA+TGG | 0.366378 | 8_1:-73978666 | Msa1213800:CDS |
| TTGCACAAACCCAAATCTAT+TGG | 0.370970 | 8_1:-73979539 | Msa1213800:CDS |
| CACTGTAACCTGTTTCCTAA+TGG | 0.370976 | 8_1:+73978061 | None:intergenic |
| TGGAGGATCCATTAGGAAAC+AGG | 0.371223 | 8_1:-73978069 | Msa1213800:three_prime_UTR |
| TCTTTCTTATGTTCTGAGTC+AGG | 0.372770 | 8_1:+73978530 | None:intergenic |
| AACTGAACAAAAGGTGAAAC+AGG | 0.374985 | 8_1:+73977957 | None:intergenic |
| GCAAATTAAATGTTGTGAAA+AGG | 0.378108 | 8_1:-73980294 | Msa1213800:CDS |
| GAAAGAAAGTGTGAAACTTT+AGG | 0.379717 | 8_1:+73981291 | None:intergenic |
| ACAAAGGCACCATAACCTTC+TGG | 0.379726 | 8_1:+73979339 | None:intergenic |
| TGGGAAAACCCTAAACAAAT+TGG | 0.379876 | 8_1:+73979994 | None:intergenic |
| GAAGAAGAAGAGGTGGGGTT+TGG | 0.380508 | 8_1:+73981356 | None:intergenic |
| TTCGAAACCGAGCGGCATAA+TGG | 0.381145 | 8_1:-73979662 | Msa1213800:CDS |
| TGATAAATACCAATAGATTT+GGG | 0.382190 | 8_1:+73979530 | None:intergenic |
| AACAGGTTACAGTGGTGGTG+GGG | 0.397837 | 8_1:-73978052 | Msa1213800:three_prime_UTR |
| GAAGAAGAGGTGGGGTTTGG+TGG | 0.406046 | 8_1:+73981359 | None:intergenic |
| ATGGGAAATTCATGGTTCAT+AGG | 0.411237 | 8_1:-73979730 | Msa1213800:CDS |
| GGATGCAGGTGTTATAGGTT+AGG | 0.411299 | 8_1:-73980476 | Msa1213800:intron |
| GTAGATCATAAACAACTTGC+AGG | 0.412759 | 8_1:+73979900 | None:intergenic |
| CAAATTAAATGTTGTGAAAA+GGG | 0.416656 | 8_1:-73980293 | Msa1213800:CDS |
| GGTGCCTTTGTTTCGACGGT+TGG | 0.420407 | 8_1:-73979327 | Msa1213800:CDS |
| ACAGGTTACAGTGGTGGTGG+GGG | 0.422448 | 8_1:-73978051 | Msa1213800:three_prime_UTR |
| CATAGATAAGGATCAAAGAT+TGG | 0.423129 | 8_1:-73979477 | Msa1213800:CDS |
| TTCAAACAATCTCTTTCTCT+AGG | 0.433235 | 8_1:+73979773 | None:intergenic |
| TAGGGTCTTCAGAATCAAAA+AGG | 0.434877 | 8_1:+73979792 | None:intergenic |
| AAGAAAGATGCTATCTCAAA+TGG | 0.436356 | 8_1:-73978515 | Msa1213800:CDS |
| CATTGTACAGTTCATAGATA+AGG | 0.447391 | 8_1:-73979489 | Msa1213800:CDS |
| TTACACAACGCAGCGATTGC+TGG | 0.448320 | 8_1:+73980028 | None:intergenic |
| CCTTACCAGCTCGCATTACC+AGG | 0.449673 | 8_1:-73979297 | Msa1213800:intron |
| GTCCAATCCGTAGGCGGTGG+TGG | 0.454679 | 8_1:-73978376 | Msa1213800:CDS |
| TAGACTCGTGTAACTATGTA+AGG | 0.459481 | 8_1:-73977735 | Msa1213800:three_prime_UTR |
| AGCCTGTGTTTGATCCTGCT+TGG | 0.461055 | 8_1:-73979928 | Msa1213800:CDS |
| CAGGTTACAGTGGTGGTGGG+GGG | 0.463589 | 8_1:-73978050 | Msa1213800:three_prime_UTR |
| GTTGGTTCTGATTTACATAG+TGG | 0.465255 | 8_1:-73978256 | Msa1213800:three_prime_UTR |
| TTGAATGATTTGTAAGAGGT+TGG | 0.469927 | 8_1:-73978274 | Msa1213800:three_prime_UTR |
| TATCATAAACTTTGCAGCAA+AGG | 0.472991 | 8_1:+73980152 | None:intergenic |
| GGCTGAATTCCAGAAGGTTA+TGG | 0.473285 | 8_1:-73979348 | Msa1213800:CDS |
| TTAAAATTTGAAGATAGCAC+TGG | 0.475257 | 8_1:-73978219 | Msa1213800:three_prime_UTR |
| TGACACTCTTGCATATTAGC+AGG | 0.482127 | 8_1:+73977907 | None:intergenic |
| TAAAGGGACTATTGAAGTAT+TGG | 0.483354 | 8_1:-73979442 | Msa1213800:CDS |
| TGAAGATAGCACTGGCAATA+GGG | 0.484431 | 8_1:-73978211 | Msa1213800:three_prime_UTR |
| CCACTACTCGAACGAAACTT+AGG | 0.485337 | 8_1:+73979971 | None:intergenic |
| TTGGTTAGCTCAGTGATAAA+GGG | 0.485661 | 8_1:-73979458 | Msa1213800:CDS |
| CACCACCACCGCCTACGGAT+TGG | 0.487683 | 8_1:+73978374 | None:intergenic |
| GTGCTCTTCTTTCAATGGCA+AGG | 0.488424 | 8_1:+73979592 | None:intergenic |
| CTTCCTCTTCGATCTTGCGT+TGG | 0.492096 | 8_1:+73978470 | None:intergenic |
| AGGTTACAGTGGTGGTGGGG+GGG | 0.494447 | 8_1:-73978049 | Msa1213800:three_prime_UTR |
| TAGCAGTAGCTGGTTTCACT+TGG | 0.494863 | 8_1:+73978341 | None:intergenic |
| ACCGAGCATGTAGCAGTAGC+TGG | 0.494955 | 8_1:+73978331 | None:intergenic |
| TAGAATCTATGGGAAATTCA+TGG | 0.495390 | 8_1:-73979738 | Msa1213800:CDS |
| TACATAACTCACAGAATCAC+TGG | 0.498799 | 8_1:-73978570 | Msa1213800:CDS |
| AAGAATTTGCTTTATCATTG+TGG | 0.501957 | 8_1:+73980441 | None:intergenic |
| TTGCTTAGGTGGTGCTGAGT+AGG | 0.510457 | 8_1:-73978109 | Msa1213800:three_prime_UTR |
| CGAGAGGCAGAATCACTTGT+CGG | 0.511926 | 8_1:+73978608 | None:intergenic |
| GTATTTCAGTGTACAAATGT+TGG | 0.518089 | 8_1:-73980331 | Msa1213800:CDS |
| AATATCACCACCACCGCCTA+CGG | 0.518328 | 8_1:+73978369 | None:intergenic |
| GTTCATGAGTGAGTTGGAAG+AGG | 0.521832 | 8_1:-73979390 | Msa1213800:CDS |
| ATAGATTTGGGTTTGTGCAA+AGG | 0.523747 | 8_1:+73979542 | None:intergenic |
| TCAAACAATCTCTTTCTCTA+GGG | 0.524186 | 8_1:+73979774 | None:intergenic |
| GTTGTTGAATGATTTGTAAG+AGG | 0.531556 | 8_1:-73978278 | Msa1213800:three_prime_UTR |
| GAAACAGGTTACAGTGGTGG+TGG | 0.531817 | 8_1:-73978054 | Msa1213800:three_prime_UTR |
| CGAGTCTAGTAGAGTAGAGT+AGG | 0.532175 | 8_1:+73977750 | None:intergenic |
| TTATGGTGCCTTTGTTTCGA+CGG | 0.533773 | 8_1:-73979331 | Msa1213800:CDS |
| TACGGATTGGACGCTGGTGG+CGG | 0.536186 | 8_1:+73978387 | None:intergenic |
| CTGTTAGCAATATCATCTAC+CGG | 0.536734 | 8_1:-73979691 | Msa1213800:CDS |
| AGCAATTCCATTATGCCGCT+CGG | 0.539353 | 8_1:+73979655 | None:intergenic |
| GCCAGTTACTAATAGCCAAA+AGG | 0.540094 | 8_1:-73979420 | Msa1213800:CDS |
| AGCGTCCAATCCGTAGGCGG+TGG | 0.540571 | 8_1:-73978379 | Msa1213800:CDS |
| GCTCGGTTTCGAAAACAAAC+CGG | 0.543787 | 8_1:+73979672 | None:intergenic |
| TTTCCTGCAAGCATGAATGC+TGG | 0.544053 | 8_1:-73980256 | Msa1213800:CDS |
| AAACAGGTTACAGTGGTGGT+GGG | 0.544991 | 8_1:-73978053 | Msa1213800:three_prime_UTR |
| AACAACCTGGTAATGCGAGC+TGG | 0.545399 | 8_1:+73979292 | None:intergenic |
| ACCAGCTACTGCTACATGCT+CGG | 0.547168 | 8_1:-73978332 | Msa1213800:CDS |
| CTTTGCAGAATCTGATGAGT+CGG | 0.547663 | 8_1:+73980390 | None:intergenic |
| TTTCTTTCACTCTCTCAACT+GGG | 0.548420 | 8_1:-73981276 | Msa1213800:five_prime_UTR |
| GCTAATGTTCATGAGTGAGT+TGG | 0.552985 | 8_1:-73979396 | Msa1213800:CDS |
| AATAGTAAAAGAATGAATGA+AGG | 0.554043 | 8_1:-73977673 | Msa1213800:three_prime_UTR |
| CTGAGAGGCGAAGAATAACA+TGG | 0.555313 | 8_1:-73978426 | Msa1213800:CDS |
| CAAGCCAACCGTCGAAACAA+AGG | 0.561984 | 8_1:+73979323 | None:intergenic |
| CAGTTCTGCATAGAATCTAT+GGG | 0.572378 | 8_1:-73979748 | Msa1213800:CDS |
| TCATACATGTAAATTTCACT+TGG | 0.572496 | 8_1:+73977795 | None:intergenic |
| AAGTTTCGTTCGAGTAGTGG+TGG | 0.590711 | 8_1:-73979968 | Msa1213800:CDS |
| CTACTCGAACGAAACTTAGG+TGG | 0.596175 | 8_1:+73979974 | None:intergenic |
| GACACTCTTGCATATTAGCA+GGG | 0.601113 | 8_1:+73977908 | None:intergenic |
| ACATCTTTGAACGATAGAGA+AGG | 0.604949 | 8_1:+73980217 | None:intergenic |
| ATATTAGCAGGGAAAAGTGT+GGG | 0.613841 | 8_1:+73977919 | None:intergenic |
| CATATTAGCAGGGAAAAGTG+TGG | 0.616525 | 8_1:+73977918 | None:intergenic |
| ACTTGCAGGTGAGACCAAGC+AGG | 0.619708 | 8_1:+73979914 | None:intergenic |
| TACTCGAACGAAACTTAGGT+GGG | 0.627591 | 8_1:+73979975 | None:intergenic |
| AGTAGGTAGTAAAATAGACA+AGG | 0.629825 | 8_1:+73977767 | None:intergenic |
| TACCAACCTGAAAATCCGGA+GGG | 0.630973 | 8_1:+73977701 | None:intergenic |
| CATCTTTGAACGATAGAGAA+GGG | 0.631730 | 8_1:+73980218 | None:intergenic |
| AACAAAAGCATGATCTACGT+GGG | 0.634366 | 8_1:+73979829 | None:intergenic |
| AAACAAAAGCATGATCTACG+TGG | 0.636662 | 8_1:+73979828 | None:intergenic |
| GTTAGAAGAAAGATAGAACA+AGG | 0.642237 | 8_1:+73981315 | None:intergenic |
| TTTGTGTAGAAGAAAAGCAA+AGG | 0.645750 | 8_1:+73981250 | None:intergenic |
| TTACCAACCTGAAAATCCGG+AGG | 0.645896 | 8_1:+73977700 | None:intergenic |
| GCCACCAGCGTCCAATCCGT+AGG | 0.653077 | 8_1:-73978385 | Msa1213800:CDS |
| AGGGAAAAGTGTGGGCCATG+AGG | 0.654784 | 8_1:+73977927 | None:intergenic |
| GATGCTATCTCAAATGGACG+AGG | 0.659273 | 8_1:-73978509 | Msa1213800:CDS |
| TAGGAAACAGGTTACAGTGG+TGG | 0.662595 | 8_1:-73978057 | Msa1213800:three_prime_UTR |
| TAGCATGGCTGAATTCCAGA+AGG | 0.663321 | 8_1:-73979354 | Msa1213800:CDS |
| GCCTACGGATTGGACGCTGG+TGG | 0.664134 | 8_1:+73978384 | None:intergenic |
| CAGATGAAACAAAATCAACA+AGG | 0.673447 | 8_1:+73980071 | None:intergenic |
| ATGCCAACGCAAGATCGAAG+AGG | 0.677288 | 8_1:-73978473 | Msa1213800:CDS |
| CATTAGGAAACAGGTTACAG+TGG | 0.682100 | 8_1:-73978060 | Msa1213800:three_prime_UTR |
| TGAGAGGCGAAGAATAACAT+GGG | 0.696192 | 8_1:-73978425 | Msa1213800:CDS |
| GACCAAGCAGGATCAAACAC+AGG | 0.696221 | 8_1:+73979926 | None:intergenic |
| ACAAGTGCTGAGAACACGAG+AGG | 0.732134 | 8_1:+73978592 | None:intergenic |
| AATCAAGTGATGTAGCTGAG+AGG | 0.735001 | 8_1:-73978441 | Msa1213800:CDS |
| ACTGGTTACTATATGCTACG+TGG | 0.736301 | 8_1:-73977855 | Msa1213800:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTACATTAATGAATTTAT+AGG | - | chr8_1:73978478-73978497 | Msa1213800:CDS | 10.0% |
| !! | TTTAGTTAAAAACATAAGAA+GGG | + | chr8_1:73977877-73977896 | None:intergenic | 15.0% |
| !! | ATTTAGTTAAAAACATAAGA+AGG | + | chr8_1:73977878-73977897 | None:intergenic | 15.0% |
| !! | TCTATAACAAAAGATAAAAT+AGG | + | chr8_1:73980036-73980055 | None:intergenic | 15.0% |
| !! | AGCTAAAAATTAATGACTAT+AGG | + | chr8_1:73977910-73977929 | None:intergenic | 20.0% |
| !! | TTTACATAAAGAGCAATAAT+GGG | + | chr8_1:73978071-73978090 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTTTTGTTGTTTG+TGG | - | chr8_1:73978145-73978164 | Msa1213800:three_prime_UTR | 20.0% |
| !!! | AACATTTAATTTGCTTGAAA+TGG | + | chr8_1:73978738-73978757 | None:intergenic | 20.0% |
| !! | CAAATTAAATGTTGTGAAAA+GGG | - | chr8_1:73978745-73978764 | Msa1213800:intron | 20.0% |
| !! | TGATAAATACCAATAGATTT+GGG | + | chr8_1:73979511-73979530 | None:intergenic | 20.0% |
| !! | ATGATAAATACCAATAGATT+TGG | + | chr8_1:73979512-73979531 | None:intergenic | 20.0% |
| !! | TTAAGTAACTATAAATTGCA+AGG | + | chr8_1:73980276-73980295 | None:intergenic | 20.0% |
| !! | AATAGTAAAAGAATGAATGA+AGG | - | chr8_1:73981365-73981384 | Msa1213800:five_prime_UTR | 20.0% |
| !! | AGGAACAATTATTTGATTAA+AGG | - | chr8_1:73981385-73981404 | Msa1213800:five_prime_UTR | 20.0% |
| !! | GGAACAATTATTTGATTAAA+GGG | - | chr8_1:73981386-73981405 | Msa1213800:five_prime_UTR | 20.0% |
| !! | ATTATTTGATTAAAGGGAAT+TGG | - | chr8_1:73981392-73981411 | Msa1213800:five_prime_UTR | 20.0% |
| ! | ATGTAGTAAAGAGAGAAAAA+GGG | + | chr8_1:73977657-73977676 | None:intergenic | 25.0% |
| ! | CTTTACATAAAGAGCAATAA+TGG | + | chr8_1:73978072-73978091 | None:intergenic | 25.0% |
| ! | TAATAGCTCAAACAACAAAA+GGG | + | chr8_1:73978463-73978482 | None:intergenic | 25.0% |
| !! | GATTTTGAGCTTCTAAATAT+TGG | - | chr8_1:73978505-73978524 | Msa1213800:CDS | 25.0% |
| ! | TTAACTGATGTTTGATGAAT+TGG | - | chr8_1:73978541-73978560 | Msa1213800:CDS | 25.0% |
| !! | AAGAATTTGCTTTATCATTG+TGG | + | chr8_1:73978600-73978619 | None:intergenic | 25.0% |
| ! | GCAAATTAAATGTTGTGAAA+AGG | - | chr8_1:73978744-73978763 | Msa1213800:intron | 25.0% |
| ! | CTAACAGATTTCCTTATAAA+AGG | + | chr8_1:73979334-73979353 | None:intergenic | 25.0% |
| !!! | AAGAGCACAAAATATTTTTG+TGG | - | chr8_1:73979461-73979480 | Msa1213800:CDS | 25.0% |
| ! | TAAGAACTTATGAGACTATT+TGG | - | chr8_1:73979895-73979914 | Msa1213800:CDS | 25.0% |
| ! | AAGAACTTATGAGACTATTT+GGG | - | chr8_1:73979896-73979915 | Msa1213800:CDS | 25.0% |
| ! | AACAACTTATGAAATGTCAT+AGG | + | chr8_1:73979939-73979958 | None:intergenic | 25.0% |
| !! | AAACAGCTTGTAACTTTTTA+TGG | - | chr8_1:73979998-73980017 | Msa1213800:CDS | 25.0% |
| ! | CATATGAAATGCTTAGATAT+TGG | + | chr8_1:73980241-73980260 | None:intergenic | 25.0% |
| !! | ATATTTTCTTGTGATTGTTC+AGG | - | chr8_1:73980346-73980365 | Msa1213800:CDS | 25.0% |
| ! | TTAAAATTTGAAGATAGCAC+TGG | - | chr8_1:73980819-73980838 | Msa1213800:intron | 25.0% |
| !! | CAAAAACAACACAATTTTGA+AGG | + | chr8_1:73980912-73980931 | None:intergenic | 25.0% |
| !!! | AAATTGTGTTGTTTTTGCTT+AGG | - | chr8_1:73980915-73980934 | Msa1213800:intron | 25.0% |
| ! | CTATTACAATTTACATTCAC+TGG | - | chr8_1:73981165-73981184 | Msa1213800:intron | 25.0% |
| ! | TCATACATGTAAATTTCACT+TGG | + | chr8_1:73981246-73981265 | None:intergenic | 25.0% |
| GATGTAGTAAAGAGAGAAAA+AGG | + | chr8_1:73977658-73977677 | None:intergenic | 30.0% | |
| GTTAGAAGAAAGATAGAACA+AGG | + | chr8_1:73977726-73977745 | None:intergenic | 30.0% | |
| ! | GAAAGAAAGTGTGAAACTTT+AGG | + | chr8_1:73977750-73977769 | None:intergenic | 30.0% |
| TTTGTGTAGAAGAAAAGCAA+AGG | + | chr8_1:73977791-73977810 | None:intergenic | 30.0% | |
| ! | ATTTTATAGCTAGTGTGTTG+AGG | - | chr8_1:73977934-73977953 | Msa1213800:three_prime_UTR | 30.0% |
| TGATACACAATTGTTAGATC+TGG | - | chr8_1:73978229-73978248 | Msa1213800:three_prime_UTR | 30.0% | |
| AGGACATGTTAAAGAAATTG+AGG | + | chr8_1:73978321-73978340 | None:intergenic | 30.0% | |
| TATGCACAAGGAAGAATAAT+TGG | + | chr8_1:73978400-73978419 | None:intergenic | 30.0% | |
| TCAAACAAAATCTATGCACA+AGG | + | chr8_1:73978412-73978431 | None:intergenic | 30.0% | |
| AATAGCTCAAACAACAAAAG+GGG | + | chr8_1:73978462-73978481 | None:intergenic | 30.0% | |
| GTAATAGCTCAAACAACAAA+AGG | + | chr8_1:73978464-73978483 | None:intergenic | 30.0% | |
| GTATTTCAGTGTACAAATGT+TGG | - | chr8_1:73978707-73978726 | Msa1213800:intron | 30.0% | |
| TATCATAAACTTTGCAGCAA+AGG | + | chr8_1:73978889-73978908 | None:intergenic | 30.0% | |
| CAGATGAAACAAAATCAACA+AGG | + | chr8_1:73978970-73978989 | None:intergenic | 30.0% | |
| !!! | CTTGTTGATTTTGTTTCATC+TGG | - | chr8_1:73978968-73978987 | Msa1213800:intron | 30.0% |
| !! | TGATTTTGTTTCATCTGGTT+CGG | - | chr8_1:73978973-73978992 | Msa1213800:intron | 30.0% |
| TCAAACAATCTCTTTCTCTA+GGG | + | chr8_1:73979267-73979286 | None:intergenic | 30.0% | |
| TTCAAACAATCTCTTTCTCT+AGG | + | chr8_1:73979268-73979287 | None:intergenic | 30.0% | |
| TAGAATCTATGGGAAATTCA+TGG | - | chr8_1:73979300-73979319 | Msa1213800:CDS | 30.0% | |
| !!! | ATTTTTGGGAGTGTTATTAG+TGG | - | chr8_1:73979418-73979437 | Msa1213800:CDS | 30.0% |
| ! | ATTTTGTGCTCTTCTTTCAA+TGG | + | chr8_1:73979454-73979473 | None:intergenic | 30.0% |
| !! | GCACAAAATATTTTTGTGGA+AGG | - | chr8_1:73979465-73979484 | Msa1213800:CDS | 30.0% |
| CATTGTACAGTTCATAGATA+AGG | - | chr8_1:73979549-73979568 | Msa1213800:CDS | 30.0% | |
| CATAGATAAGGATCAAAGAT+TGG | - | chr8_1:73979561-73979580 | Msa1213800:CDS | 30.0% | |
| TAAAGGGACTATTGAAGTAT+TGG | - | chr8_1:73979596-73979615 | Msa1213800:CDS | 30.0% | |
| CAAACAGATACTAATGTACA+AGG | + | chr8_1:73979845-73979864 | None:intergenic | 30.0% | |
| CTTGTACATTAGTATCTGTT+TGG | - | chr8_1:73979843-73979862 | Msa1213800:CDS | 30.0% | |
| AACAAACTGTTTATCCAAAC+TGG | - | chr8_1:73980112-73980131 | Msa1213800:CDS | 30.0% | |
| TTTGTAATCCAATATCCTCA+TGG | + | chr8_1:73980142-73980161 | None:intergenic | 30.0% | |
| TGAGGATATTGGATTACAAA+TGG | - | chr8_1:73980142-73980161 | Msa1213800:CDS | 30.0% | |
| AAGAAAGATGCTATCTCAAA+TGG | - | chr8_1:73980523-73980542 | Msa1213800:intron | 30.0% | |
| ! | GTTGTTGAATGATTTGTAAG+AGG | - | chr8_1:73980760-73980779 | Msa1213800:intron | 30.0% |
| ! | TTGAATGATTTGTAAGAGGT+TGG | - | chr8_1:73980764-73980783 | Msa1213800:intron | 30.0% |
| !!! | AGGTGATGTTTTGTTTTGTT+TGG | - | chr8_1:73980949-73980968 | Msa1213800:intron | 30.0% |
| !!! | TGATGTTTTGTTTTGTTTGG+AGG | - | chr8_1:73980952-73980971 | Msa1213800:intron | 30.0% |
| GGTAACAAAAACTGAACAAA+AGG | + | chr8_1:73981093-73981112 | None:intergenic | 30.0% | |
| GTAAATTTCACTTGGCATTT+AGG | + | chr8_1:73981238-73981257 | None:intergenic | 30.0% | |
| AGTAGGTAGTAAAATAGACA+AGG | + | chr8_1:73981274-73981293 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAAGAAG+AGG | + | chr8_1:73977695-73977714 | None:intergenic | 35.0% | |
| TTTCTTTCACTCTCTCAACT+GGG | - | chr8_1:73977762-73977781 | Msa1213800:three_prime_UTR | 35.0% | |
| ! | GCTTTTCTTCTACACAAATC+AGG | - | chr8_1:73977793-73977812 | Msa1213800:three_prime_UTR | 35.0% |
| TTCTTCTACACAAATCAGGT+TGG | - | chr8_1:73977797-73977816 | Msa1213800:three_prime_UTR | 35.0% | |
| GTGAGCTACATCATCTTTAA+TGG | - | chr8_1:73977962-73977981 | Msa1213800:three_prime_UTR | 35.0% | |
| !! | CATAAAGAGCAATAATGGGT+GGG | + | chr8_1:73978067-73978086 | None:intergenic | 35.0% |
| ! | ACATAAAGAGCAATAATGGG+TGG | + | chr8_1:73978068-73978087 | None:intergenic | 35.0% |
| AAAACACTACTCTTTGCACA+AGG | + | chr8_1:73978341-73978360 | None:intergenic | 35.0% | |
| CACAAGGAAGAATAATTGGA+TGG | + | chr8_1:73978396-73978415 | None:intergenic | 35.0% | |
| ATGTTTGATGAATTGGATGC+AGG | - | chr8_1:73978548-73978567 | Msa1213800:CDS | 35.0% | |
| !! | GGCAATAGTACTACTAGTTT+TGG | - | chr8_1:73978680-73978699 | Msa1213800:intron | 35.0% |
| CATCTTTGAACGATAGAGAA+GGG | + | chr8_1:73978823-73978842 | None:intergenic | 35.0% | |
| ACATCTTTGAACGATAGAGA+AGG | + | chr8_1:73978824-73978843 | None:intergenic | 35.0% | |
| TGTTCTGTACAGTTCTTATC+AGG | + | chr8_1:73978920-73978939 | None:intergenic | 35.0% | |
| ! | TGTGTGCAACCAATTTGTTT+AGG | - | chr8_1:73979035-73979054 | Msa1213800:intron | 35.0% |
| ! | GTGTGCAACCAATTTGTTTA+GGG | - | chr8_1:73979036-73979055 | Msa1213800:intron | 35.0% |
| TGGGAAAACCCTAAACAAAT+TGG | + | chr8_1:73979047-73979066 | None:intergenic | 35.0% | |
| GTAGATCATAAACAACTTGC+AGG | + | chr8_1:73979141-73979160 | None:intergenic | 35.0% | |
| ! | AACAAAAGCATGATCTACGT+GGG | + | chr8_1:73979212-73979231 | None:intergenic | 35.0% |
| ! | AAACAAAAGCATGATCTACG+TGG | + | chr8_1:73979213-73979232 | None:intergenic | 35.0% |
| TAGGGTCTTCAGAATCAAAA+AGG | + | chr8_1:73979249-73979268 | None:intergenic | 35.0% | |
| ACAGTTCTGCATAGAATCTA+TGG | - | chr8_1:73979289-73979308 | Msa1213800:intron | 35.0% | |
| CAGTTCTGCATAGAATCTAT+GGG | - | chr8_1:73979290-73979309 | Msa1213800:intron | 35.0% | |
| ATGGGAAATTCATGGTTCAT+AGG | - | chr8_1:73979308-73979327 | Msa1213800:CDS | 35.0% | |
| ! | TGGTTCATAGGCCTTTTATA+AGG | - | chr8_1:73979320-73979339 | Msa1213800:CDS | 35.0% |
| CTGTTAGCAATATCATCTAC+CGG | - | chr8_1:73979347-73979366 | Msa1213800:CDS | 35.0% | |
| ! | TAATGGAATTGCTGAGCTTT+TGG | - | chr8_1:73979393-73979412 | Msa1213800:CDS | 35.0% |
| !! | CTGAGCTTTTGGAGATTTTT+GGG | - | chr8_1:73979404-73979423 | Msa1213800:CDS | 35.0% |
| ! | ATAGATTTGGGTTTGTGCAA+AGG | + | chr8_1:73979499-73979518 | None:intergenic | 35.0% |
| TTGCACAAACCCAAATCTAT+TGG | - | chr8_1:73979499-73979518 | Msa1213800:CDS | 35.0% | |
| ! | ATTGGTTAGCTCAGTGATAA+AGG | - | chr8_1:73979579-73979598 | Msa1213800:CDS | 35.0% |
| ! | TTGGTTAGCTCAGTGATAAA+GGG | - | chr8_1:73979580-73979599 | Msa1213800:CDS | 35.0% |
| !! | TCCTTTTGGCTATTAGTAAC+TGG | + | chr8_1:73979622-73979641 | None:intergenic | 35.0% |
| ! | TCATGAACATTAGCTCCTTT+TGG | + | chr8_1:73979636-73979655 | None:intergenic | 35.0% |
| TTAAAAGAGCAACTAGAACG+AGG | + | chr8_1:73979786-73979805 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGTTATCC+AGG | + | chr8_1:73979985-73980004 | None:intergenic | 35.0% |
| ! | TCATCTAAAGCTCAAGTTTG+AGG | + | chr8_1:73980202-73980221 | None:intergenic | 35.0% |
| ! | TTTTCTTGTGATTGTTCAGG+TGG | - | chr8_1:73980349-73980368 | Msa1213800:CDS | 35.0% |
| ! | GGTTTTGCGTTATAAGATTC+AGG | + | chr8_1:73980412-73980431 | None:intergenic | 35.0% |
| TACATAACTCACAGAATCAC+TGG | - | chr8_1:73980468-73980487 | Msa1213800:five_prime_UTR | 35.0% | |
| ! | TCTTTCTTATGTTCTGAGTC+AGG | + | chr8_1:73980511-73980530 | None:intergenic | 35.0% |
| !! | GTTGGTTCTGATTTACATAG+TGG | - | chr8_1:73980782-73980801 | Msa1213800:intron | 35.0% |
| !!! | TTGTGTTGTTTTTGCTTAGG+TGG | - | chr8_1:73980918-73980937 | Msa1213800:intron | 35.0% |
| !! | TTTTGTTTGGAGGATCCATT+AGG | - | chr8_1:73980962-73980981 | Msa1213800:intron | 35.0% |
| AACTGAACAAAAGGTGAAAC+AGG | + | chr8_1:73981084-73981103 | None:intergenic | 35.0% | |
| ! | GTTCAGTTTTTGTTACCTCA+TGG | - | chr8_1:73981096-73981115 | Msa1213800:intron | 35.0% |
| ! | ATATTAGCAGGGAAAAGTGT+GGG | + | chr8_1:73981122-73981141 | None:intergenic | 35.0% |
| TAGACTCGTGTAACTATGTA+AGG | - | chr8_1:73981303-73981322 | Msa1213800:five_prime_UTR | 35.0% | |
| ! | CTTTTACCAACCTGAAAATC+CGG | + | chr8_1:73981344-73981363 | None:intergenic | 35.0% |
| AAGAAGAAGAAGAAGAGGTG+GGG | + | chr8_1:73977690-73977709 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGAAGAGGT+GGG | + | chr8_1:73977691-73977710 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGAAGAGG+TGG | + | chr8_1:73977692-73977711 | None:intergenic | 40.0% | |
| CTTTCTTTCACTCTCTCAAC+TGG | - | chr8_1:73977761-73977780 | Msa1213800:three_prime_UTR | 40.0% | |
| GAGAAAGTGAGTGATGAGAA+GGG | + | chr8_1:73977841-73977860 | None:intergenic | 40.0% | |
| AGAGAAAGTGAGTGATGAGA+AGG | + | chr8_1:73977842-73977861 | None:intergenic | 40.0% | |
| GCTACATCATCTTTAATGGC+TGG | - | chr8_1:73977966-73977985 | Msa1213800:three_prime_UTR | 40.0% | |
| CTCAACTTTGTCATGTCACT+TGG | - | chr8_1:73978199-73978218 | Msa1213800:three_prime_UTR | 40.0% | |
| ! | GAATTGGATGCAGGTGTTAT+AGG | - | chr8_1:73978557-73978576 | Msa1213800:CDS | 40.0% |
| !! | TCGGATTTTGGCAACTTCTT+AGG | + | chr8_1:73978632-73978651 | None:intergenic | 40.0% |
| ! | GAATCTGATGAGTCGGATTT+TGG | + | chr8_1:73978644-73978663 | None:intergenic | 40.0% |
| CTTTGCAGAATCTGATGAGT+CGG | + | chr8_1:73978651-73978670 | None:intergenic | 40.0% | |
| GATTCTGCAAAGAGTGATTC+TGG | - | chr8_1:73978659-73978678 | Msa1213800:CDS | 40.0% | |
| TACTCGAACGAAACTTAGGT+GGG | + | chr8_1:73979066-73979085 | None:intergenic | 40.0% | |
| !! | GCTGAGCTTTTGGAGATTTT+TGG | - | chr8_1:73979403-73979422 | Msa1213800:CDS | 40.0% |
| GCCAGTTACTAATAGCCAAA+AGG | - | chr8_1:73979618-73979637 | Msa1213800:CDS | 40.0% | |
| GCTAATGTTCATGAGTGAGT+TGG | - | chr8_1:73979642-73979661 | Msa1213800:CDS | 40.0% | |
| ! | TTATGGTGCCTTTGTTTCGA+CGG | - | chr8_1:73979707-73979726 | Msa1213800:CDS | 40.0% |
| CTAATTTCACTAAGCTCTCC+TGG | - | chr8_1:73979964-73979983 | Msa1213800:CDS | 40.0% | |
| ! | TTATGTTCTGAGTCAGGTTC+AGG | + | chr8_1:73980505-73980524 | None:intergenic | 40.0% |
| AATCAAGTGATGTAGCTGAG+AGG | - | chr8_1:73980597-73980616 | Msa1213800:intron | 40.0% | |
| TGAGAGGCGAAGAATAACAT+GGG | - | chr8_1:73980613-73980632 | Msa1213800:intron | 40.0% | |
| !! | TTGAAGATAGCACTGGCAAT+AGG | - | chr8_1:73980826-73980845 | Msa1213800:intron | 40.0% |
| !! | TGAAGATAGCACTGGCAATA+GGG | - | chr8_1:73980827-73980846 | Msa1213800:intron | 40.0% |
| CACTGTAACCTGTTTCCTAA+TGG | + | chr8_1:73980980-73980999 | None:intergenic | 40.0% | |
| CATTAGGAAACAGGTTACAG+TGG | - | chr8_1:73980978-73980997 | Msa1213800:intron | 40.0% | |
| CATATTAGCAGGGAAAAGTG+TGG | + | chr8_1:73981123-73981142 | None:intergenic | 40.0% | |
| GACACTCTTGCATATTAGCA+GGG | + | chr8_1:73981133-73981152 | None:intergenic | 40.0% | |
| TGACACTCTTGCATATTAGC+AGG | + | chr8_1:73981134-73981153 | None:intergenic | 40.0% | |
| ACTGGTTACTATATGCTACG+TGG | - | chr8_1:73981183-73981202 | Msa1213800:intron | 40.0% | |
| !!! | AAGGCTTTAGATTTTCCCTC+CGG | - | chr8_1:73981322-73981341 | Msa1213800:five_prime_UTR | 40.0% |
| ! | TTAATGGCTGGCTCTTCAAG+TGG | - | chr8_1:73977978-73977997 | Msa1213800:three_prime_UTR | 45.0% |
| TCTTCAAGTGGTTGTGGTTG+TGG | - | chr8_1:73977990-73978009 | Msa1213800:three_prime_UTR | 45.0% | |
| GGTGGGAAAAACTGAGATCT+GGG | + | chr8_1:73978050-73978069 | None:intergenic | 45.0% | |
| ! | GGATGCAGGTGTTATAGGTT+AGG | - | chr8_1:73978562-73978581 | Msa1213800:CDS | 45.0% |
| TTTCCTGCAAGCATGAATGC+TGG | - | chr8_1:73978782-73978801 | Msa1213800:intron | 45.0% | |
| CTACTCGAACGAAACTTAGG+TGG | + | chr8_1:73979067-73979086 | None:intergenic | 45.0% | |
| CCACTACTCGAACGAAACTT+AGG | + | chr8_1:73979070-73979089 | None:intergenic | 45.0% | |
| CCTAAGTTTCGTTCGAGTAG+TGG | - | chr8_1:73979067-73979086 | Msa1213800:intron | 45.0% | |
| AAGTTTCGTTCGAGTAGTGG+TGG | - | chr8_1:73979070-73979089 | Msa1213800:intron | 45.0% | |
| GCTCGGTTTCGAAAACAAAC+CGG | + | chr8_1:73979369-73979388 | None:intergenic | 45.0% | |
| !! | GGTTTGTTTTCGAAACCGAG+CGG | - | chr8_1:73979368-73979387 | Msa1213800:CDS | 45.0% |
| AGCAATTCCATTATGCCGCT+CGG | + | chr8_1:73979386-73979405 | None:intergenic | 45.0% | |
| GTGCTCTTCTTTCAATGGCA+AGG | + | chr8_1:73979449-73979468 | None:intergenic | 45.0% | |
| ! | GTTCATGAGTGAGTTGGAAG+AGG | - | chr8_1:73979648-73979667 | Msa1213800:CDS | 45.0% |
| !! | GAGTGAGTTGGAAGAGGTTT+TGG | - | chr8_1:73979654-73979673 | Msa1213800:CDS | 45.0% |
| !!! | GGTTTTGGAGATGACTAGCA+TGG | - | chr8_1:73979669-73979688 | Msa1213800:CDS | 45.0% |
| TAGCATGGCTGAATTCCAGA+AGG | - | chr8_1:73979684-73979703 | Msa1213800:CDS | 45.0% | |
| GGCTGAATTCCAGAAGGTTA+TGG | - | chr8_1:73979690-73979709 | Msa1213800:CDS | 45.0% | |
| !! | ACAAAGGCACCATAACCTTC+TGG | + | chr8_1:73979702-73979721 | None:intergenic | 45.0% |
| TCGGCTAAGAGAAAACAACC+TGG | + | chr8_1:73979762-73979781 | None:intergenic | 45.0% | |
| AGAGCAACTAGAACGAGGAT+CGG | + | chr8_1:73979781-73979800 | None:intergenic | 45.0% | |
| ATCCAAACTGGACATCCATG+AGG | - | chr8_1:73980124-73980143 | Msa1213800:CDS | 45.0% | |
| ATCCTCATGGATGTCCAGTT+TGG | + | chr8_1:73980129-73980148 | None:intergenic | 45.0% | |
| CTGGACATCCATGAGGATAT+TGG | - | chr8_1:73980131-73980150 | Msa1213800:CDS | 45.0% | |
| TCTTGTGATTGTTCAGGTGG+CGG | - | chr8_1:73980352-73980371 | Msa1213800:CDS | 45.0% | |
| ! | CGGAACGAGCTCATTTGTTA+TGG | - | chr8_1:73980372-73980391 | Msa1213800:CDS | 45.0% |
| GATGCTATCTCAAATGGACG+AGG | - | chr8_1:73980529-73980548 | Msa1213800:intron | 45.0% | |
| CTGAGAGGCGAAGAATAACA+TGG | - | chr8_1:73980612-73980631 | Msa1213800:intron | 45.0% | |
| ! | TAGCAGTAGCTGGTTTCACT+TGG | + | chr8_1:73980700-73980719 | None:intergenic | 45.0% |
| TGGAGGATCCATTAGGAAAC+AGG | - | chr8_1:73980969-73980988 | Msa1213800:intron | 45.0% | |
| TAGGAAACAGGTTACAGTGG+TGG | - | chr8_1:73980981-73981000 | Msa1213800:intron | 45.0% | |
| AAACAGGTTACAGTGGTGGT+GGG | - | chr8_1:73980985-73981004 | Msa1213800:intron | 45.0% | |
| CGAGTCTAGTAGAGTAGAGT+AGG | + | chr8_1:73981291-73981310 | None:intergenic | 45.0% | |
| ! | GATTTTCCCTCCGGATTTTC+AGG | - | chr8_1:73981331-73981350 | Msa1213800:five_prime_UTR | 45.0% |
| TACCAACCTGAAAATCCGGA+GGG | + | chr8_1:73981340-73981359 | None:intergenic | 45.0% | |
| TTACCAACCTGAAAATCCGG+AGG | + | chr8_1:73981341-73981360 | None:intergenic | 45.0% | |
| GAAGAAGAAGAGGTGGGGTT+TGG | + | chr8_1:73977685-73977704 | None:intergenic | 50.0% | |
| GGGTGGGAAAAACTGAGATC+TGG | + | chr8_1:73978051-73978070 | None:intergenic | 50.0% | |
| ACACCAGCATTCATGCTTGC+AGG | + | chr8_1:73978788-73978807 | None:intergenic | 50.0% | |
| TTACACAACGCAGCGATTGC+TGG | + | chr8_1:73979013-73979032 | None:intergenic | 50.0% | |
| AGCCTGTGTTTGATCCTGCT+TGG | - | chr8_1:73979110-73979129 | Msa1213800:intron | 50.0% | |
| GACCAAGCAGGATCAAACAC+AGG | + | chr8_1:73979115-73979134 | None:intergenic | 50.0% | |
| TTCGAAACCGAGCGGCATAA+TGG | - | chr8_1:73979376-73979395 | Msa1213800:CDS | 50.0% | |
| CAAGCCAACCGTCGAAACAA+AGG | + | chr8_1:73979718-73979737 | None:intergenic | 50.0% | |
| ! | AACAACCTGGTAATGCGAGC+TGG | + | chr8_1:73979749-73979768 | None:intergenic | 50.0% |
| CGAGAGGCAGAATCACTTGT+CGG | + | chr8_1:73980433-73980452 | None:intergenic | 50.0% | |
| !! | ACAAGTGCTGAGAACACGAG+AGG | + | chr8_1:73980449-73980468 | None:intergenic | 50.0% |
| ATGCCAACGCAAGATCGAAG+AGG | - | chr8_1:73980565-73980584 | Msa1213800:intron | 50.0% | |
| CTTCCTCTTCGATCTTGCGT+TGG | + | chr8_1:73980571-73980590 | None:intergenic | 50.0% | |
| AATATCACCACCACCGCCTA+CGG | + | chr8_1:73980672-73980691 | None:intergenic | 50.0% | |
| ACCAGCTACTGCTACATGCT+CGG | - | chr8_1:73980706-73980725 | Msa1213800:intron | 50.0% | |
| ! | TTGCTTAGGTGGTGCTGAGT+AGG | - | chr8_1:73980929-73980948 | Msa1213800:intron | 50.0% |
| GAAACAGGTTACAGTGGTGG+TGG | - | chr8_1:73980984-73981003 | Msa1213800:intron | 50.0% | |
| ! | AACAGGTTACAGTGGTGGTG+GGG | - | chr8_1:73980986-73981005 | Msa1213800:intron | 50.0% |
| !!! | TGGGGGGGTGTTTTATGTGT+CGG | - | chr8_1:73981004-73981023 | Msa1213800:intron | 50.0% |
| !!! | TTCCCTCCGGATTTTCAGGT+TGG | - | chr8_1:73981335-73981354 | Msa1213800:five_prime_UTR | 50.0% |
| GAAGAAGAGGTGGGGTTTGG+TGG | + | chr8_1:73977682-73977701 | None:intergenic | 55.0% | |
| ! | GCTGGCTCTTCAAGTGGTTG+TGG | - | chr8_1:73977984-73978003 | Msa1213800:three_prime_UTR | 55.0% |
| ACTTGCAGGTGAGACCAAGC+AGG | + | chr8_1:73979127-73979146 | None:intergenic | 55.0% | |
| ! | GGTGCCTTTGTTTCGACGGT+TGG | - | chr8_1:73979711-73979730 | Msa1213800:CDS | 55.0% |
| ! | CCTGGTAATGCGAGCTGGTA+AGG | + | chr8_1:73979744-73979763 | None:intergenic | 55.0% |
| CCTTACCAGCTCGCATTACC+AGG | - | chr8_1:73979741-73979760 | Msa1213800:CDS | 55.0% | |
| ACCGAGCATGTAGCAGTAGC+TGG | + | chr8_1:73980710-73980729 | None:intergenic | 55.0% | |
| !! | ACAGGTTACAGTGGTGGTGG+GGG | - | chr8_1:73980987-73981006 | Msa1213800:intron | 55.0% |
| !!! | GGGGGTGTTTTATGTGTCGG+TGG | - | chr8_1:73981007-73981026 | Msa1213800:intron | 55.0% |
| ! | AGGGAAAAGTGTGGGCCATG+AGG | + | chr8_1:73981114-73981133 | None:intergenic | 55.0% |
| !! | TACGGATTGGACGCTGGTGG+CGG | + | chr8_1:73980654-73980673 | None:intergenic | 60.0% |
| ACCAGCGTCCAATCCGTAGG+CGG | - | chr8_1:73980656-73980675 | Msa1213800:intron | 60.0% | |
| !! | CAGGTTACAGTGGTGGTGGG+GGG | - | chr8_1:73980988-73981007 | Msa1213800:intron | 60.0% |
| !! | AGGTTACAGTGGTGGTGGGG+GGG | - | chr8_1:73980989-73981008 | Msa1213800:intron | 60.0% |
| !! | CGCTGGTGGCGGCTTCTTCA+AGG | + | chr8_1:73980643-73980662 | None:intergenic | 65.0% |
| GCCACCAGCGTCCAATCCGT+AGG | - | chr8_1:73980653-73980672 | Msa1213800:intron | 65.0% | |
| !! | GCCTACGGATTGGACGCTGG+TGG | + | chr8_1:73980657-73980676 | None:intergenic | 65.0% |
| !! | ACCGCCTACGGATTGGACGC+TGG | + | chr8_1:73980660-73980679 | None:intergenic | 65.0% |
| AGCGTCCAATCCGTAGGCGG+TGG | - | chr8_1:73980659-73980678 | Msa1213800:intron | 65.0% | |
| GTCCAATCCGTAGGCGGTGG+TGG | - | chr8_1:73980662-73980681 | Msa1213800:intron | 65.0% | |
| CACCACCACCGCCTACGGAT+TGG | + | chr8_1:73980667-73980686 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 73977635 | 73981425 | 73977635 | ID=Msa1213800;Name=Msa1213800 |
| chr8_1 | mRNA | 73977635 | 73981425 | 73977635 | ID=Msa1213800-mRNA-1;Parent=Msa1213800;Name=Msa1213800-mRNA-1;_AED=0.04;_eAED=0.04;_QI=212|1|1|1|0.5|0.33|3|686|510 |
| chr8_1 | exon | 73977635 | 73978692 | 73977635 | ID=Msa1213800-mRNA-1:exon:25275;Parent=Msa1213800-mRNA-1 |
| chr8_1 | exon | 73979298 | 73980490 | 73979298 | ID=Msa1213800-mRNA-1:exon:25274;Parent=Msa1213800-mRNA-1 |
| chr8_1 | exon | 73981246 | 73981425 | 73981246 | ID=Msa1213800-mRNA-1:exon:25273;Parent=Msa1213800-mRNA-1 |
| chr8_1 | five_prime_UTR | 73981246 | 73981425 | 73981246 | ID=Msa1213800-mRNA-1:five_prime_utr;Parent=Msa1213800-mRNA-1 |
| chr8_1 | five_prime_UTR | 73980459 | 73980490 | 73980459 | ID=Msa1213800-mRNA-1:five_prime_utr;Parent=Msa1213800-mRNA-1 |
| chr8_1 | CDS | 73979298 | 73980458 | 73979298 | ID=Msa1213800-mRNA-1:cds;Parent=Msa1213800-mRNA-1 |
| chr8_1 | CDS | 73978321 | 73978692 | 73978321 | ID=Msa1213800-mRNA-1:cds;Parent=Msa1213800-mRNA-1 |
| chr8_1 | three_prime_UTR | 73977635 | 73978320 | 73977635 | ID=Msa1213800-mRNA-1:three_prime_utr;Parent=Msa1213800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
