Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845110 | XP_003613642.1 | 96.820 | 283 | 3 | 1 | 1 | 277 | 1 | 283 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845110 | sp|Q8LC03|ATB13_ARATH | 63.322 | 289 | 90 | 6 | 4 | 277 | 7 | 294 | 8.37e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845110 | G7KB59 | 96.820 | 283 | 3 | 1 | 1 | 277 | 1 | 283 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0845110 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0845110 | 0.813414 | 2.590861e-51 | -8.615850e-47 |
| Msa0003720 | Msa0845110 | 0.818143 | 2.286156e-52 | -8.615850e-47 |
| Msa0027820 | Msa0845110 | 0.830862 | 2.311611e-55 | -8.615850e-47 |
| Msa0035120 | Msa0845110 | 0.822492 | 2.300855e-53 | -8.615850e-47 |
| Msa0051020 | Msa0845110 | 0.814466 | 1.519068e-51 | -8.615850e-47 |
| Msa0061340 | Msa0845110 | 0.807835 | 4.163610e-50 | -8.615850e-47 |
| Msa0063890 | Msa0845110 | 0.831427 | 1.679955e-55 | -8.615850e-47 |
| Msa0069330 | Msa0845110 | 0.800938 | 1.139505e-48 | -8.615850e-47 |
| Msa0072720 | Msa0845110 | 0.813063 | 3.094522e-51 | -8.615850e-47 |
| Msa0081520 | Msa0845110 | 0.816566 | 5.176316e-52 | -8.615850e-47 |
| Msa0092790 | Msa0845110 | 0.804963 | 1.678363e-49 | -8.615850e-47 |
| Msa0093850 | Msa0845110 | 0.826048 | 3.359912e-54 | -8.615850e-47 |
| Msa0101270 | Msa0845110 | 0.806802 | 6.892429e-50 | -8.615850e-47 |
| Msa0101440 | Msa0845110 | 0.829002 | 6.566169e-55 | -8.615850e-47 |
| Msa0104550 | Msa0845110 | 0.800827 | 1.200612e-48 | -8.615850e-47 |
| Msa0108410 | Msa0845110 | 0.821424 | 4.067447e-53 | -8.615850e-47 |
| Msa0625630 | Msa0845110 | 0.801529 | 8.626757e-49 | -8.615850e-47 |
| Msa0626450 | Msa0845110 | 0.838475 | 2.813770e-57 | -8.615850e-47 |
| Msa0626490 | Msa0845110 | 0.835613 | 1.515267e-56 | -8.615850e-47 |
| Msa0637560 | Msa0845110 | 0.804697 | 1.907890e-49 | -8.615850e-47 |
| Msa0637580 | Msa0845110 | 0.801182 | 1.016077e-48 | -8.615850e-47 |
| Msa0638480 | Msa0845110 | 0.823922 | 1.067264e-53 | -8.615850e-47 |
| Msa0663300 | Msa0845110 | 0.803308 | 3.709559e-49 | -8.615850e-47 |
| Msa0664600 | Msa0845110 | 0.838438 | 2.875488e-57 | -8.615850e-47 |
| Msa0693330 | Msa0845110 | 0.835748 | 1.400763e-56 | -8.615850e-47 |
| Msa0707250 | Msa0845110 | 0.824827 | 6.534653e-54 | -8.615850e-47 |
| Msa0710800 | Msa0845110 | 0.821633 | 3.640626e-53 | -8.615850e-47 |
| Msa0720690 | Msa0845110 | 0.803107 | 4.082663e-49 | -8.615850e-47 |
| Msa0725000 | Msa0845110 | 0.998053 | 4.910551e-255 | -8.615850e-47 |
| Msa0729100 | Msa0845110 | 0.841761 | 3.906109e-58 | -8.615850e-47 |
| Msa0738040 | Msa0845110 | 0.811826 | 5.765457e-51 | -8.615850e-47 |
| Msa0765270 | Msa0845110 | 0.981628 | 4.691341e-153 | -8.615850e-47 |
| Msa0766930 | Msa0845110 | 0.823708 | 1.197441e-53 | -8.615850e-47 |
| Msa0769180 | Msa0845110 | 0.800940 | 1.138670e-48 | -8.615850e-47 |
| Msa0788770 | Msa0845110 | 0.813019 | 3.164041e-51 | -8.615850e-47 |
| Msa0789100 | Msa0845110 | 0.806911 | 6.534509e-50 | -8.615850e-47 |
| Msa0805330 | Msa0845110 | 0.803768 | 2.977543e-49 | -8.615850e-47 |
| Msa0807280 | Msa0845110 | 0.855906 | 4.606527e-62 | -8.615850e-47 |
| Msa0807820 | Msa0845110 | 0.860182 | 2.468246e-63 | -8.615850e-47 |
| Msa0833530 | Msa0845110 | 0.807996 | 3.847508e-50 | -8.615850e-47 |
| Msa0124060 | Msa0845110 | 0.811090 | 8.330672e-51 | -8.615850e-47 |
| Msa0131900 | Msa0845110 | 0.804000 | 2.665221e-49 | -8.615850e-47 |
| Msa0136650 | Msa0845110 | 0.812895 | 3.367531e-51 | -8.615850e-47 |
| Msa0138360 | Msa0845110 | 0.845991 | 2.874490e-59 | -8.615850e-47 |
| Msa0144360 | Msa0845110 | 0.838070 | 3.576510e-57 | -8.615850e-47 |
| Msa0146280 | Msa0845110 | 0.822188 | 2.707652e-53 | -8.615850e-47 |
| Msa0147980 | Msa0845110 | 0.820910 | 5.342605e-53 | -8.615850e-47 |
| Msa0152400 | Msa0845110 | 0.813571 | 2.392391e-51 | -8.615850e-47 |
| Msa0168500 | Msa0845110 | 0.817644 | 2.963098e-52 | -8.615850e-47 |
| Msa0173890 | Msa0845110 | 0.806471 | 8.095872e-50 | -8.615850e-47 |
| Msa0186010 | Msa0845110 | 0.811623 | 6.382489e-51 | -8.615850e-47 |
| Msa0188350 | Msa0845110 | 0.808723 | 2.691602e-50 | -8.615850e-47 |
| Msa0199520 | Msa0845110 | 0.803571 | 3.272055e-49 | -8.615850e-47 |
| Msa0212990 | Msa0845110 | 0.805536 | 1.273139e-49 | -8.615850e-47 |
| Msa0214550 | Msa0845110 | 0.803997 | 2.669112e-49 | -8.615850e-47 |
| Msa0221000 | Msa0845110 | 0.822872 | 1.877569e-53 | -8.615850e-47 |
| Msa0225100 | Msa0845110 | 0.818387 | 2.013111e-52 | -8.615850e-47 |
| Msa0225680 | Msa0845110 | 0.817385 | 3.389390e-52 | -8.615850e-47 |
| Msa0231380 | Msa0845110 | 0.802846 | 4.621992e-49 | -8.615850e-47 |
| Msa0233730 | Msa0845110 | 0.806993 | 6.281046e-50 | -8.615850e-47 |
| Msa0365100 | Msa0845110 | 0.826197 | 3.096299e-54 | -8.615850e-47 |
| Msa0367870 | Msa0845110 | 0.828757 | 7.526404e-55 | -8.615850e-47 |
| Msa0376630 | Msa0845110 | 0.814158 | 1.776477e-51 | -8.615850e-47 |
| Msa0378720 | Msa0845110 | 0.837804 | 4.186879e-57 | -8.615850e-47 |
| Msa0403640 | Msa0845110 | 0.800105 | 1.684674e-48 | -8.615850e-47 |
| Msa0406770 | Msa0845110 | 0.826730 | 2.310565e-54 | -8.615850e-47 |
| Msa0410500 | Msa0845110 | 0.808905 | 2.461212e-50 | -8.615850e-47 |
| Msa0422850 | Msa0845110 | 0.805264 | 1.451769e-49 | -8.615850e-47 |
| Msa0422930 | Msa0845110 | 0.809297 | 2.028850e-50 | -8.615850e-47 |
| Msa0427100 | Msa0845110 | 0.825465 | 4.619251e-54 | -8.615850e-47 |
| Msa0427120 | Msa0845110 | 0.825758 | 3.936148e-54 | -8.615850e-47 |
| Msa0428920 | Msa0845110 | 0.808250 | 3.396241e-50 | -8.615850e-47 |
| Msa0430260 | Msa0845110 | 0.816383 | 5.690397e-52 | -8.615850e-47 |
| Msa0450400 | Msa0845110 | -0.820759 | 5.787801e-53 | -8.615850e-47 |
| Msa0452710 | Msa0845110 | 0.801459 | 8.914316e-49 | -8.615850e-47 |
| Msa0460590 | Msa0845110 | 0.807321 | 5.352442e-50 | -8.615850e-47 |
| Msa0467430 | Msa0845110 | 0.807367 | 5.233835e-50 | -8.615850e-47 |
| Msa0473500 | Msa0845110 | 0.813178 | 2.918580e-51 | -8.615850e-47 |
| Msa0474730 | Msa0845110 | 0.843404 | 1.430499e-58 | -8.615850e-47 |
| Msa0479170 | Msa0845110 | 0.829123 | 6.137752e-55 | -8.615850e-47 |
| Msa0479200 | Msa0845110 | 0.855542 | 5.885151e-62 | -8.615850e-47 |
| Msa0240900 | Msa0845110 | 0.820413 | 6.951038e-53 | -8.615850e-47 |
| Msa0244640 | Msa0845110 | 0.812612 | 3.883709e-51 | -8.615850e-47 |
| Msa0247940 | Msa0845110 | 0.806347 | 8.596003e-50 | -8.615850e-47 |
| Msa0251710 | Msa0845110 | 0.808391 | 3.169003e-50 | -8.615850e-47 |
| Msa0253290 | Msa0845110 | 0.833588 | 4.892720e-56 | -8.615850e-47 |
| Msa0266180 | Msa0845110 | 0.812457 | 4.200132e-51 | -8.615850e-47 |
| Msa0270660 | Msa0845110 | 0.802020 | 6.840146e-49 | -8.615850e-47 |
| Msa0281430 | Msa0845110 | 0.804672 | 1.930463e-49 | -8.615850e-47 |
| Msa0281530 | Msa0845110 | 0.810477 | 1.130563e-50 | -8.615850e-47 |
| Msa0287740 | Msa0845110 | 0.829868 | 4.044909e-55 | -8.615850e-47 |
| Msa0288080 | Msa0845110 | 0.821734 | 3.449300e-53 | -8.615850e-47 |
| Msa0292120 | Msa0845110 | 0.812100 | 5.023577e-51 | -8.615850e-47 |
| Msa0292400 | Msa0845110 | 0.812456 | 4.201275e-51 | -8.615850e-47 |
| Msa0296250 | Msa0845110 | 0.822371 | 2.454918e-53 | -8.615850e-47 |
| Msa0300270 | Msa0845110 | 0.831479 | 1.631295e-55 | -8.615850e-47 |
| Msa0300320 | Msa0845110 | 0.824335 | 8.535178e-54 | -8.615850e-47 |
| Msa0317970 | Msa0845110 | 0.833420 | 5.387019e-56 | -8.615850e-47 |
| Msa0318700 | Msa0845110 | 0.822891 | 1.858017e-53 | -8.615850e-47 |
| Msa0320590 | Msa0845110 | 0.817074 | 3.981931e-52 | -8.615850e-47 |
| Msa0321620 | Msa0845110 | 0.819527 | 1.108378e-52 | -8.615850e-47 |
| Msa0322900 | Msa0845110 | 0.802128 | 6.498210e-49 | -8.615850e-47 |
| Msa0330340 | Msa0845110 | 0.811592 | 6.483252e-51 | -8.615850e-47 |
| Msa0337700 | Msa0845110 | 0.825632 | 4.217181e-54 | -8.615850e-47 |
| Msa0341690 | Msa0845110 | 0.819555 | 1.092131e-52 | -8.615850e-47 |
| Msa0357990 | Msa0845110 | 0.819410 | 1.178404e-52 | -8.615850e-47 |
| Msa0360210 | Msa0845110 | 0.826580 | 2.508888e-54 | -8.615850e-47 |
| Msa0485240 | Msa0845110 | 0.828350 | 9.441227e-55 | -8.615850e-47 |
| Msa0500380 | Msa0845110 | 0.803497 | 3.389175e-49 | -8.615850e-47 |
| Msa0518030 | Msa0845110 | 0.812228 | 4.712653e-51 | -8.615850e-47 |
| Msa0527190 | Msa0845110 | 0.849203 | 3.760210e-60 | -8.615850e-47 |
| Msa0527860 | Msa0845110 | 0.814344 | 1.615941e-51 | -8.615850e-47 |
| Msa0572840 | Msa0845110 | 0.836430 | 9.399722e-57 | -8.615850e-47 |
| Msa0597790 | Msa0845110 | 0.821431 | 4.051838e-53 | -8.615850e-47 |
| Msa0845110 | Msa0856050 | 0.825224 | 5.266577e-54 | -8.615850e-47 |
| Msa0845110 | Msa0861510 | 0.813783 | 2.149098e-51 | -8.615850e-47 |
| Msa0845110 | Msa0861600 | 0.813366 | 2.654393e-51 | -8.615850e-47 |
| Msa0845110 | Msa0866290 | 0.831699 | 1.439443e-55 | -8.615850e-47 |
| Msa0845110 | Msa0869780 | 0.810951 | 8.928668e-51 | -8.615850e-47 |
| Msa0845110 | Msa0873220 | 0.833213 | 6.069301e-56 | -8.615850e-47 |
| Msa0845110 | Msa0875290 | 0.801471 | 8.865951e-49 | -8.615850e-47 |
| Msa0845110 | Msa0938480 | 0.828340 | 9.494214e-55 | -8.615850e-47 |
| Msa0845110 | Msa0943440 | 0.816001 | 6.926084e-52 | -8.615850e-47 |
| Msa0845110 | Msa0967380 | 0.803197 | 3.910121e-49 | -8.615850e-47 |
| Msa0845110 | Msa0967870 | 0.832635 | 8.447488e-56 | -8.615850e-47 |
| Msa0845110 | Msa0975640 | 0.802375 | 5.780740e-49 | -8.615850e-47 |
| Msa0845110 | Msa0980140 | 0.842970 | 1.867922e-58 | -8.615850e-47 |
| Msa0845110 | Msa1020510 | 0.808839 | 2.542692e-50 | -8.615850e-47 |
| Msa0845110 | Msa1023500 | 0.810371 | 1.191931e-50 | -8.615850e-47 |
| Msa0845110 | Msa1029070 | 0.827729 | 1.332036e-54 | -8.615850e-47 |
| Msa0845110 | Msa1031930 | 0.800404 | 1.464387e-48 | -8.615850e-47 |
| Msa0845110 | Msa1034500 | 0.821787 | 3.353468e-53 | -8.615850e-47 |
| Msa0845110 | Msa1043370 | 0.816553 | 5.212299e-52 | -8.615850e-47 |
| Msa0845110 | Msa1051830 | 0.802386 | 5.749686e-49 | -8.615850e-47 |
| Msa0845110 | Msa1059960 | 0.827415 | 1.584129e-54 | -8.615850e-47 |
| Msa0845110 | Msa1079230 | 0.828061 | 1.108476e-54 | -8.615850e-47 |
| Msa0845110 | Msa1087650 | 0.815242 | 1.021897e-51 | -8.615850e-47 |
| Msa0845110 | Msa1089450 | 0.828823 | 7.254599e-55 | -8.615850e-47 |
| Msa0845110 | Msa1095650 | 0.804955 | 1.685082e-49 | -8.615850e-47 |
| Msa0845110 | Msa1096960 | 0.805021 | 1.632192e-49 | -8.615850e-47 |
| Msa0845110 | Msa1105160 | 0.826155 | 3.168644e-54 | -8.615850e-47 |
| Msa0845110 | Msa1113340 | 0.833258 | 5.913507e-56 | -8.615850e-47 |
| Msa0845110 | Msa1124110 | 0.815881 | 7.364555e-52 | -8.615850e-47 |
| Msa0845110 | Msa1140220 | 0.803933 | 2.751949e-49 | -8.615850e-47 |
| Msa0845110 | Msa1151910 | 0.804535 | 2.062071e-49 | -8.615850e-47 |
| Msa0845110 | Msa1156160 | 0.824050 | 9.956524e-54 | -8.615850e-47 |
| Msa0845110 | Msa1162770 | 0.803865 | 2.842971e-49 | -8.615850e-47 |
| Msa0845110 | Msa1168950 | 0.810425 | 1.159954e-50 | -8.615850e-47 |
| Msa0845110 | Msa1169040 | 0.806793 | 6.923534e-50 | -8.615850e-47 |
| Msa0845110 | Msa1183120 | 0.845260 | 4.538557e-59 | -8.615850e-47 |
| Msa0845110 | Msa1192090 | 0.830683 | 2.557645e-55 | -8.615850e-47 |
| Msa0845110 | Msa1213800 | 0.830041 | 3.670614e-55 | -8.615850e-47 |
| Msa0845110 | Msa1225700 | 0.811449 | 6.961746e-51 | -8.615850e-47 |
| Msa0845110 | Msa1228200 | 0.814331 | 1.626502e-51 | -8.615850e-47 |
| Msa0845110 | Msa1229500 | 0.855964 | 4.430514e-62 | -8.615850e-47 |
| Msa0845110 | Msa1271990 | 0.848604 | 5.515006e-60 | -8.615850e-47 |
| Msa0845110 | Msa1276660 | 0.802540 | 5.345438e-49 | -8.615850e-47 |
| Msa0845110 | Msa1297230 | 0.808127 | 3.607471e-50 | -8.615850e-47 |
| Msa0845110 | Msa1307870 | 0.800571 | 1.353827e-48 | -8.615850e-47 |
| Msa0845110 | Msa1330420 | 0.804736 | 1.872395e-49 | -8.615850e-47 |
| Msa0845110 | Msa1348090 | 0.818896 | 1.542647e-52 | -8.615850e-47 |
| Msa0845110 | Msa1355450 | 0.828682 | 7.850598e-55 | -8.615850e-47 |
| Msa0845110 | Msa1369150 | 0.811141 | 8.122287e-51 | -8.615850e-47 |
| Msa0845110 | Msa1371520 | 0.851777 | 7.114707e-61 | -8.615850e-47 |
| Msa0845110 | Msa1374060 | 0.825734 | 3.989168e-54 | -8.615850e-47 |
| Msa0845110 | Msa1382560 | 0.812319 | 4.500374e-51 | -8.615850e-47 |
| Msa0845110 | Msa1385890 | 0.825382 | 4.832655e-54 | -8.615850e-47 |
| Msa0845110 | Msa1387870 | 0.819769 | 9.758614e-53 | -8.615850e-47 |
| Msa0845110 | Msa1418240 | 0.832565 | 8.790561e-56 | -8.615850e-47 |
| Msa0845110 | Msa1419370 | 0.832347 | 9.954269e-56 | -8.615850e-47 |
| Msa0845110 | Msa1423350 | 0.818262 | 2.148035e-52 | -8.615850e-47 |
| Msa0845110 | Msa1425880 | 0.835090 | 2.053671e-56 | -8.615850e-47 |
| Msa0845110 | Msa1432500 | 0.823265 | 1.519844e-53 | -8.615850e-47 |
| Msa0845110 | Msa1440310 | 0.813746 | 2.189275e-51 | -8.615850e-47 |
| Msa0845110 | Msa1440960 | 0.841545 | 4.452587e-58 | -8.615850e-47 |
| Msa0845110 | Msa1444510 | 0.805359 | 1.386702e-49 | -8.615850e-47 |
| Msa0845110 | Msa1446810 | 0.803412 | 3.529487e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845110 | MtrunA17_Chr5g0416391 | 96.820 | 283 | 3 | 1 | 1 | 277 | 1 | 283 | 0.0 | 563 |
| Msa0845110 | MtrunA17_Chr8g0362151 | 81.119 | 286 | 38 | 7 | 4 | 277 | 1 | 282 | 2.73e-149 | 419 |
| Msa0845110 | MtrunA17_Chr6g0453021 | 52.218 | 293 | 85 | 11 | 11 | 275 | 9 | 274 | 1.15e-81 | 247 |
| Msa0845110 | MtrunA17_Chr7g0217111 | 51.087 | 276 | 121 | 8 | 4 | 270 | 1 | 271 | 5.09e-77 | 235 |
| Msa0845110 | MtrunA17_Chr8g0381741 | 44.886 | 176 | 88 | 3 | 65 | 238 | 40 | 208 | 4.64e-39 | 138 |
| Msa0845110 | MtrunA17_Chr6g0450991 | 64.000 | 100 | 36 | 0 | 73 | 172 | 63 | 162 | 6.18e-38 | 135 |
| Msa0845110 | MtrunA17_Chr5g0415941 | 51.634 | 153 | 67 | 3 | 23 | 172 | 34 | 182 | 1.53e-37 | 135 |
| Msa0845110 | MtrunA17_Chr3g0123691 | 57.500 | 120 | 48 | 1 | 64 | 180 | 47 | 166 | 1.74e-37 | 134 |
| Msa0845110 | MtrunA17_Chr3g0119291 | 54.225 | 142 | 54 | 2 | 62 | 192 | 44 | 185 | 2.08e-37 | 132 |
| Msa0845110 | MtrunA17_Chr4g0060031 | 54.688 | 128 | 54 | 1 | 45 | 172 | 67 | 190 | 8.52e-37 | 133 |
| Msa0845110 | MtrunA17_Chr8g0362751 | 50.641 | 156 | 65 | 2 | 28 | 172 | 30 | 184 | 1.42e-36 | 131 |
| Msa0845110 | MtrunA17_Chr7g0265521 | 50.926 | 108 | 46 | 1 | 65 | 172 | 51 | 151 | 1.40e-30 | 114 |
| Msa0845110 | MtrunA17_Chr1g0179581 | 54.167 | 96 | 41 | 2 | 62 | 156 | 14 | 107 | 7.45e-26 | 98.6 |
| Msa0845110 | MtrunA17_Chr3g0127511 | 53.846 | 91 | 42 | 0 | 79 | 169 | 40 | 130 | 8.97e-26 | 102 |
| Msa0845110 | MtrunA17_Chr8g0346251 | 41.322 | 121 | 71 | 0 | 51 | 171 | 15 | 135 | 2.32e-23 | 95.5 |
| Msa0845110 | MtrunA17_Chr4g0054421 | 47.573 | 103 | 52 | 1 | 62 | 164 | 114 | 214 | 6.52e-21 | 89.7 |
| Msa0845110 | MtrunA17_Chr4g0055851 | 45.545 | 101 | 54 | 1 | 65 | 164 | 107 | 207 | 5.15e-20 | 87.4 |
| Msa0845110 | MtrunA17_Chr5g0403701 | 48.889 | 90 | 46 | 0 | 77 | 166 | 53 | 142 | 3.01e-19 | 83.6 |
| Msa0845110 | MtrunA17_Chr5g0403691 | 47.872 | 94 | 49 | 0 | 77 | 170 | 53 | 146 | 3.51e-19 | 84.0 |
| Msa0845110 | MtrunA17_Chr7g0258831 | 45.283 | 106 | 54 | 1 | 69 | 174 | 152 | 253 | 7.11e-19 | 84.3 |
| Msa0845110 | MtrunA17_Chr5g0400781 | 45.000 | 100 | 55 | 0 | 69 | 168 | 115 | 214 | 8.33e-19 | 84.0 |
| Msa0845110 | MtrunA17_Chr2g0308611 | 40.833 | 120 | 70 | 1 | 45 | 164 | 169 | 287 | 1.07e-18 | 84.3 |
| Msa0845110 | MtrunA17_Chr1g0175651 | 46.875 | 96 | 51 | 0 | 69 | 164 | 146 | 241 | 1.15e-18 | 84.0 |
| Msa0845110 | MtrunA17_Chr5g0399491 | 40.323 | 124 | 74 | 0 | 41 | 164 | 100 | 223 | 1.32e-18 | 83.6 |
| Msa0845110 | MtrunA17_Chr8g0335131 | 48.913 | 92 | 47 | 0 | 77 | 168 | 146 | 237 | 1.73e-18 | 83.6 |
| Msa0845110 | MtrunA17_Chr1g0151971 | 38.889 | 144 | 81 | 2 | 27 | 164 | 75 | 217 | 3.67e-18 | 82.4 |
| Msa0845110 | MtrunA17_Chr4g0071411 | 44.706 | 85 | 47 | 0 | 80 | 164 | 91 | 175 | 2.73e-16 | 75.9 |
| Msa0845110 | MtrunA17_Chr4g0044091 | 46.591 | 88 | 47 | 0 | 77 | 164 | 65 | 152 | 9.60e-16 | 73.9 |
| Msa0845110 | MtrunA17_Chr3g0135331 | 43.617 | 94 | 53 | 0 | 55 | 148 | 123 | 216 | 1.18e-15 | 75.5 |
| Msa0845110 | MtrunA17_Chr2g0299031 | 38.182 | 110 | 65 | 1 | 58 | 164 | 60 | 169 | 9.43e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845110 | AT1G69780.1 | 63.322 | 289 | 90 | 6 | 4 | 277 | 7 | 294 | 8.51e-118 | 340 |
| Msa0845110 | AT1G26960.1 | 57.500 | 280 | 81 | 11 | 4 | 277 | 8 | 255 | 3.43e-94 | 278 |
| Msa0845110 | AT3G01220.1 | 49.635 | 274 | 117 | 8 | 3 | 270 | 15 | 273 | 2.52e-76 | 234 |
| Msa0845110 | AT5G15150.1 | 45.205 | 292 | 124 | 11 | 3 | 270 | 21 | 300 | 3.95e-66 | 209 |
| Msa0845110 | AT5G65310.2 | 50.602 | 166 | 75 | 3 | 65 | 223 | 39 | 204 | 1.76e-41 | 145 |
| Msa0845110 | AT5G65310.1 | 50.602 | 166 | 75 | 3 | 65 | 223 | 57 | 222 | 3.72e-41 | 144 |
| Msa0845110 | AT4G40060.1 | 61.947 | 113 | 41 | 1 | 76 | 186 | 58 | 170 | 1.41e-37 | 134 |
| Msa0845110 | AT2G22430.1 | 67.010 | 97 | 32 | 0 | 76 | 172 | 61 | 157 | 3.16e-37 | 134 |
| Msa0845110 | AT3G01470.1 | 63.000 | 100 | 37 | 0 | 73 | 172 | 64 | 163 | 1.89e-36 | 131 |
| Msa0845110 | AT1G27045.1 | 40.625 | 192 | 96 | 5 | 11 | 195 | 12 | 192 | 1.55e-29 | 112 |
| Msa0845110 | AT1G27045.5 | 45.517 | 145 | 72 | 2 | 58 | 195 | 5 | 149 | 1.09e-27 | 105 |
| Msa0845110 | AT1G27045.3 | 45.517 | 145 | 72 | 2 | 58 | 195 | 5 | 149 | 1.09e-27 | 105 |
| Msa0845110 | AT1G27045.4 | 43.312 | 157 | 77 | 4 | 11 | 166 | 12 | 157 | 1.62e-27 | 107 |
| Msa0845110 | AT1G27045.2 | 48.800 | 125 | 58 | 1 | 77 | 195 | 17 | 141 | 4.57e-27 | 103 |
| Msa0845110 | AT2G46680.1 | 52.688 | 93 | 44 | 0 | 78 | 170 | 33 | 125 | 2.52e-26 | 104 |
| Msa0845110 | AT2G46680.2 | 53.333 | 90 | 42 | 0 | 78 | 167 | 33 | 122 | 1.57e-25 | 102 |
| Msa0845110 | AT5G03790.1 | 38.356 | 146 | 78 | 1 | 19 | 164 | 31 | 164 | 3.62e-24 | 97.8 |
| Msa0845110 | AT3G61890.1 | 51.111 | 90 | 44 | 0 | 80 | 169 | 33 | 122 | 3.70e-24 | 97.8 |
| Msa0845110 | AT5G03790.2 | 40.000 | 130 | 66 | 1 | 19 | 148 | 31 | 148 | 4.84e-23 | 94.0 |
| Msa0845110 | AT2G18550.1 | 35.354 | 198 | 96 | 6 | 20 | 205 | 7 | 184 | 1.08e-22 | 93.6 |
| Msa0845110 | AT4G36740.2 | 48.544 | 103 | 46 | 1 | 68 | 170 | 47 | 142 | 1.54e-21 | 90.5 |
| Msa0845110 | AT4G36740.1 | 48.544 | 103 | 46 | 1 | 68 | 170 | 46 | 141 | 1.62e-21 | 90.5 |
| Msa0845110 | AT2G36610.1 | 41.379 | 116 | 58 | 2 | 59 | 166 | 55 | 168 | 4.08e-21 | 88.6 |
| Msa0845110 | AT5G66700.1 | 46.552 | 116 | 53 | 2 | 64 | 172 | 60 | 173 | 8.57e-21 | 88.6 |
| Msa0845110 | AT5G53980.1 | 45.545 | 101 | 55 | 0 | 72 | 172 | 6 | 106 | 2.23e-20 | 85.9 |
| Msa0845110 | AT3G60390.1 | 45.545 | 101 | 55 | 0 | 64 | 164 | 149 | 249 | 5.32e-19 | 85.5 |
| Msa0845110 | AT4G37790.1 | 45.000 | 100 | 55 | 0 | 65 | 164 | 114 | 213 | 2.50e-18 | 82.8 |
| Msa0845110 | AT5G47370.1 | 43.434 | 99 | 56 | 0 | 66 | 164 | 119 | 217 | 3.15e-18 | 82.8 |
| Msa0845110 | AT2G01430.1 | 44.554 | 101 | 56 | 0 | 64 | 164 | 126 | 226 | 1.21e-17 | 80.9 |
| Msa0845110 | AT5G06710.1 | 44.792 | 96 | 53 | 0 | 69 | 164 | 182 | 277 | 1.41e-17 | 81.6 |
| Msa0845110 | AT2G22800.1 | 44.792 | 96 | 53 | 0 | 69 | 164 | 105 | 200 | 3.45e-17 | 79.7 |
| Msa0845110 | AT4G17460.1 | 42.708 | 96 | 55 | 0 | 69 | 164 | 127 | 222 | 1.25e-16 | 78.2 |
| Msa0845110 | AT2G44910.1 | 46.591 | 88 | 47 | 0 | 77 | 164 | 163 | 250 | 2.84e-16 | 77.8 |
| Msa0845110 | AT1G70920.1 | 37.600 | 125 | 69 | 2 | 56 | 180 | 50 | 165 | 1.14e-14 | 71.6 |
| Msa0845110 | AT1G70920.2 | 37.600 | 125 | 69 | 2 | 56 | 180 | 20 | 135 | 2.24e-14 | 70.1 |
| Msa0845110 | AT4G16780.1 | 40.625 | 96 | 57 | 0 | 69 | 164 | 121 | 216 | 3.83e-14 | 71.2 |
| Msa0845110 | AT2G01430.2 | 51.515 | 66 | 32 | 0 | 64 | 129 | 126 | 191 | 9.98e-13 | 66.2 |
| Msa0845110 | AT5G06710.4 | 51.667 | 60 | 29 | 0 | 69 | 128 | 182 | 241 | 1.67e-11 | 63.5 |
Find 67 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTGACCATTTGAATTTC+TGG | 0.030649 | 5_4:+23811453 | None:intergenic |
| ATTTATCTCTTTAAAATTAA+TGG | 0.144739 | 5_4:+23811129 | None:intergenic |
| ATCCTTCTGTTTCTTTGTTC+AGG | 0.195256 | 5_4:+23811646 | None:intergenic |
| AACATTTCAATTGAATTAAA+AGG | 0.215413 | 5_4:-23811362 | Msa0845110:exon |
| CCACCTTCTGCTAGGCCTTC+AGG | 0.235321 | 5_4:-23811510 | Msa0845110:CDS |
| TGGATGATCAAGCTGGATTT+TGG | 0.257444 | 5_4:-23811401 | Msa0845110:CDS |
| TTTCTGGCCTTGAAGAAGTT+TGG | 0.289017 | 5_4:+23811469 | None:intergenic |
| TTTCGATTAAACGGTCTTTA+CGG | 0.293933 | 5_4:-23811099 | Msa0845110:three_prime_UTR |
| CTCCATCTTATTCGATTTGA+AGG | 0.313747 | 5_4:-23813533 | Msa0845110:five_prime_UTR |
| GAAGAAGAGGAGGCTTAATA+TGG | 0.330137 | 5_4:-23812766 | Msa0845110:CDS |
| AACCTAGACAAGTTGCTATA+TGG | 0.331625 | 5_4:-23812653 | Msa0845110:CDS |
| TATAGCTTACATACAATAAA+GGG | 0.333373 | 5_4:-23813707 | Msa0845110:five_prime_UTR |
| CTATATGGTTTCAAAATAGA+AGG | 0.336540 | 5_4:-23812638 | Msa0845110:CDS |
| TTTATATATGAATGAATAAA+GGG | 0.350520 | 5_4:-23811018 | Msa0845110:three_prime_UTR |
| GTATAGCTTACATACAATAA+AGG | 0.353034 | 5_4:-23813708 | Msa0845110:five_prime_UTR |
| TTGTTTAATGTGAAATCAAA+AGG | 0.361082 | 5_4:-23811304 | Msa0845110:three_prime_UTR |
| TTAAAATGACGTTTAGTGTA+AGG | 0.382650 | 5_4:+23813823 | None:intergenic |
| TATGCATACCATGATAATCT+TGG | 0.383501 | 5_4:+23813192 | None:intergenic |
| ATGCATACCATGATAATCTT+GGG | 0.394882 | 5_4:+23813193 | None:intergenic |
| TCATGCATTGTTGCTTGTCT+AGG | 0.398751 | 5_4:+23813305 | None:intergenic |
| GAATCCACTACACCTACTTA+TGG | 0.399350 | 5_4:-23811169 | Msa0845110:three_prime_UTR |
| TCATCTGATAAATCTTCTTC+AGG | 0.406192 | 5_4:+23812807 | None:intergenic |
| AGAATTGAGTTCAGTGAAGA+TGG | 0.417198 | 5_4:+23813218 | None:intergenic |
| TAGCTGGTCTTGAAGATTTG+TGG | 0.429766 | 5_4:-23813332 | Msa0845110:five_prime_UTR |
| GAAAGAGGACTATCACTTGC+TGG | 0.446270 | 5_4:+23811567 | None:intergenic |
| TTCAAAATAGAAGGGCTAGA+TGG | 0.455440 | 5_4:-23812629 | Msa0845110:CDS |
| CCTTCTTTCCACCTTCTGCT+AGG | 0.463390 | 5_4:-23811518 | Msa0845110:CDS |
| TTCAGGTTGATTGATTCTGT+TGG | 0.470903 | 5_4:+23811663 | None:intergenic |
| TTTGTAGCATGAAATTTGCT+TGG | 0.480428 | 5_4:+23813270 | None:intergenic |
| TGTTTAATGTGAAATCAAAA+GGG | 0.486923 | 5_4:-23811303 | Msa0845110:three_prime_UTR |
| GAAGAAGATTTATCAGATGA+TGG | 0.491350 | 5_4:-23812804 | Msa0845110:CDS |
| GTCCTTCAAATCGAATAAGA+TGG | 0.494060 | 5_4:+23813531 | None:intergenic |
| CCTAGCAGAAGGTGGAAAGA+AGG | 0.498274 | 5_4:+23811518 | None:intergenic |
| TTCAAGGCCAGAAATTCAAA+TGG | 0.500653 | 5_4:-23811460 | Msa0845110:CDS |
| GATCTCTTCCCTAGAAATGA+TGG | 0.506735 | 5_4:+23812876 | None:intergenic |
| TAAAATGACGTTTAGTGTAA+GGG | 0.507051 | 5_4:+23813824 | None:intergenic |
| TATATATGATATCAGATAGC+TGG | 0.509537 | 5_4:-23813348 | Msa0845110:intron |
| TCTTATGTAAATATTTGGAA+AGG | 0.514879 | 5_4:+23813579 | None:intergenic |
| ACGACGATTGCACCATAAGT+AGG | 0.527935 | 5_4:+23811157 | None:intergenic |
| TGACGTTTAGTGTAAGGGGA+TGG | 0.531984 | 5_4:+23813829 | None:intergenic |
| AGGTTCTGCTTGTTGTATGT+TGG | 0.535809 | 5_4:+23811538 | None:intergenic |
| TCAGATGATGGATCACAAGC+TGG | 0.546396 | 5_4:-23812792 | Msa0845110:CDS |
| ATTCTACCCCAAGATTATCA+TGG | 0.549074 | 5_4:-23813200 | Msa0845110:intron |
| TAACGGATGTCACTGCTCAA+TGG | 0.551390 | 5_4:+23811068 | None:intergenic |
| CACAAGCTGGAGAGAAGAAG+AGG | 0.557400 | 5_4:-23812779 | Msa0845110:CDS |
| AGCTGAGCAATTCCACCTGA+AGG | 0.558857 | 5_4:+23811495 | None:intergenic |
| TGTGGTATGGATGATCAAGC+TGG | 0.559995 | 5_4:-23811408 | Msa0845110:CDS |
| AAAATGACGTTTAGTGTAAG+GGG | 0.562850 | 5_4:+23813825 | None:intergenic |
| TGAGGGATGCTTGAATCTAT+AGG | 0.568000 | 5_4:+23813640 | None:intergenic |
| AACCATATAGCAACTTGTCT+AGG | 0.569003 | 5_4:+23812651 | None:intergenic |
| TATATGGTTTCAAAATAGAA+GGG | 0.590755 | 5_4:-23812637 | Msa0845110:CDS |
| AAATGTTGTTGCTCCAACCA+TGG | 0.592621 | 5_4:+23811378 | None:intergenic |
| CCACCTGAAGGCCTAGCAGA+AGG | 0.595631 | 5_4:+23811507 | None:intergenic |
| ACAAGCAACAATGCATGAGA+TGG | 0.601705 | 5_4:-23813300 | Msa0845110:exon |
| CCTGAAGGCCTAGCAGAAGG+TGG | 0.606372 | 5_4:+23811510 | None:intergenic |
| GTAATAAGCTTGAGCCTGAG+AGG | 0.611232 | 5_4:-23812707 | Msa0845110:CDS |
| AAGCTGGAGAGAAGAAGAGG+AGG | 0.613532 | 5_4:-23812776 | Msa0845110:CDS |
| TGCACCATAAGTAGGTGTAG+TGG | 0.615352 | 5_4:+23811165 | None:intergenic |
| GAACAGTTCAGATATCAAGT+TGG | 0.615882 | 5_4:-23811604 | Msa0845110:CDS |
| TAGATGGAAGACAAAGCAGT+TGG | 0.627956 | 5_4:-23812613 | Msa0845110:CDS |
| TGCATACCATGATAATCTTG+GGG | 0.632466 | 5_4:+23813194 | None:intergenic |
| CCTTCTGCTAGGCCTTCAGG+TGG | 0.640058 | 5_4:-23811507 | Msa0845110:CDS |
| ATAGCTTACATACAATAAAG+GGG | 0.647435 | 5_4:-23813706 | Msa0845110:five_prime_UTR |
| ATGGTTGATGATGATCATCA+TGG | 0.653135 | 5_4:+23813237 | None:intergenic |
| GTATGTTGGTGTGTAGAAAG+AGG | 0.664598 | 5_4:+23811552 | None:intergenic |
| TGATGATCATCATGGTGATG+AGG | 0.679615 | 5_4:+23813245 | None:intergenic |
| AACCTGAACAAAGAAACAGA+AGG | 0.692102 | 5_4:-23811648 | Msa0845110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGTGATATATA+TGG | - | chr5_4:23811201-23811220 | Msa0845110:three_prime_UTR | 10.0% |
| !! | TAAAGTACAATATATTTAAT+TGG | + | chr5_4:23812626-23812645 | None:intergenic | 10.0% |
| !!! | GTTATTATTTTTTATAACAA+TGG | - | chr5_4:23812678-23812697 | Msa0845110:CDS | 10.0% |
| !!! | ATTTATCTCTTTAAAATTAA+TGG | + | chr5_4:23813753-23813772 | None:intergenic | 10.0% |
| !!! | TTTTATATATGAATGAATAA+AGG | - | chr5_4:23813860-23813879 | Msa0845110:five_prime_UTR | 10.0% |
| !! | TTTATATATGAATGAATAAA+GGG | - | chr5_4:23813861-23813880 | Msa0845110:five_prime_UTR | 10.0% |
| !!! | TTTTATGTGCATAAATAAAA+AGG | + | chr5_4:23811119-23811138 | None:intergenic | 15.0% |
| !!! | CTTTTTCTTATGTAAATATT+TGG | + | chr5_4:23811308-23811327 | None:intergenic | 15.0% |
| !!! | TTCTTTGAAAATTAATATCT+TGG | - | chr5_4:23811440-23811459 | Msa0845110:CDS | 15.0% |
| !!! | TTTCCAGTTTTTTTTTTTAA+CGG | - | chr5_4:23811801-23811820 | Msa0845110:intron | 15.0% |
| !!! | GGTTAATTTTTTTTTTGTAA+CGG | + | chr5_4:23812569-23812588 | None:intergenic | 15.0% |
| !! | TTTGTAGAAATAATACTATT+TGG | - | chr5_4:23812756-23812775 | Msa0845110:CDS | 15.0% |
| !!! | ATCTTGATTAATTTACTTTT+AGG | + | chr5_4:23812902-23812921 | None:intergenic | 15.0% |
| !!! | AAATTATCTAATTATTGGTT+CGG | + | chr5_4:23813159-23813178 | None:intergenic | 15.0% |
| !!! | TTTTAATTTGTTACAGATAT+TGG | - | chr5_4:23813176-23813195 | Msa0845110:intron | 15.0% |
| !! | AACATTTCAATTGAATTAAA+AGG | - | chr5_4:23813517-23813536 | Msa0845110:five_prime_UTR | 15.0% |
| !!! | AATTTAAACTTTTCAAAACA+AGG | + | chr5_4:23813644-23813663 | None:intergenic | 15.0% |
| !! | TATAGCTTACATACAATAAA+GGG | - | chr5_4:23811172-23811191 | Msa0845110:three_prime_UTR | 20.0% |
| !! | TCTTATGTAAATATTTGGAA+AGG | + | chr5_4:23811303-23811322 | None:intergenic | 20.0% |
| !!! | TAAACTGAAACTCTTATTTT+TGG | - | chr5_4:23811963-23811982 | Msa0845110:intron | 20.0% |
| !!! | TTATTTTTGGTATCTAATGT+AGG | - | chr5_4:23811976-23811995 | Msa0845110:intron | 20.0% |
| !!! | TATTTTTGGTATCTAATGTA+GGG | - | chr5_4:23811977-23811996 | Msa0845110:intron | 20.0% |
| !! | TATATGGTTTCAAAATAGAA+GGG | - | chr5_4:23812242-23812261 | Msa0845110:intron | 20.0% |
| !!! | CTATTATATTACAGTTTTAG+AGG | - | chr5_4:23812415-23812434 | Msa0845110:intron | 20.0% |
| !!! | ATGAGTATGATTTTGAATTT+CGG | + | chr5_4:23812590-23812609 | None:intergenic | 20.0% |
| !!! | TTAATTTACTTTTAGGTGAT+TGG | + | chr5_4:23812895-23812914 | None:intergenic | 20.0% |
| !! | TGAAGTGAAAATAAAATCAT+TGG | + | chr5_4:23812925-23812944 | None:intergenic | 20.0% |
| !!! | TCTCTAGAAACTTTATAATA+TGG | + | chr5_4:23813005-23813024 | None:intergenic | 20.0% |
| !! | TTGTTTAATGTGAAATCAAA+AGG | - | chr5_4:23813575-23813594 | Msa0845110:five_prime_UTR | 20.0% |
| !! | TGTTTAATGTGAAATCAAAA+GGG | - | chr5_4:23813576-23813595 | Msa0845110:five_prime_UTR | 20.0% |
| !!! | ATGTTTTTCTTTCGATTAAA+CGG | - | chr5_4:23813771-23813790 | Msa0845110:five_prime_UTR | 20.0% |
| ! | TAAAATGACGTTTAGTGTAA+GGG | + | chr5_4:23811058-23811077 | None:intergenic | 25.0% |
| ! | TTAAAATGACGTTTAGTGTA+AGG | + | chr5_4:23811059-23811078 | None:intergenic | 25.0% |
| ! | AGCATTTGTAGAAAAAATTG+AGG | + | chr5_4:23811092-23811111 | None:intergenic | 25.0% |
| ! | GTATAGCTTACATACAATAA+AGG | - | chr5_4:23811171-23811190 | Msa0845110:three_prime_UTR | 25.0% |
| ! | ATAGCTTACATACAATAAAG+GGG | - | chr5_4:23811173-23811192 | Msa0845110:three_prime_UTR | 25.0% |
| ! | TATATATGATATCAGATAGC+TGG | - | chr5_4:23811531-23811550 | Msa0845110:CDS | 25.0% |
| ! | ATGCATATCATGATAATCTT+GGG | + | chr5_4:23811737-23811756 | None:intergenic | 25.0% |
| ! | TATGCATATCATGATAATCT+TGG | + | chr5_4:23811738-23811757 | None:intergenic | 25.0% |
| ! | TTGCCGTTAAAAAAAAAAAC+TGG | + | chr5_4:23811807-23811826 | None:intergenic | 25.0% |
| !!! | ATGTTTTTAATCTCTGATAC+TGG | + | chr5_4:23811871-23811890 | None:intergenic | 25.0% |
| !!! | ATTTTTGGTATCTAATGTAG+GGG | - | chr5_4:23811978-23811997 | Msa0845110:intron | 25.0% |
| ! | CTATATGGTTTCAAAATAGA+AGG | - | chr5_4:23812241-23812260 | Msa0845110:intron | 25.0% |
| !!! | TAAAGTTGATGTTAGAGAAT+AGG | + | chr5_4:23812856-23812875 | None:intergenic | 25.0% |
| ! | ATGACTTCTTTCTCTTAAAT+AGG | - | chr5_4:23812945-23812964 | Msa0845110:intron | 25.0% |
| !! | TAAGATGAGACATTTTTATG+TGG | + | chr5_4:23812982-23813001 | None:intergenic | 25.0% |
| !!! | ACATCCGTTATTTATTTTTG+CGG | - | chr5_4:23813824-23813843 | Msa0845110:five_prime_UTR | 25.0% |
| ! | AACTCCGCAAAAATAAATAA+CGG | + | chr5_4:23813831-23813850 | None:intergenic | 25.0% |
| AAAATGACGTTTAGTGTAAG+GGG | + | chr5_4:23811057-23811076 | None:intergenic | 30.0% | |
| AACAAGTGACAAAGACAATA+AGG | + | chr5_4:23811422-23811441 | None:intergenic | 30.0% | |
| ! | TTTGTAGCATGAAATTTGCT+TGG | + | chr5_4:23811612-23811631 | None:intergenic | 30.0% |
| ATGCATACCATGATAATCTT+GGG | + | chr5_4:23811689-23811708 | None:intergenic | 30.0% | |
| TATGCATACCATGATAATCT+TGG | + | chr5_4:23811690-23811709 | None:intergenic | 30.0% | |
| TGCATATCATGATAATCTTG+GGG | + | chr5_4:23811736-23811755 | None:intergenic | 30.0% | |
| !!! | ATGATGTTTTGATGCAACAT+AGG | + | chr5_4:23811771-23811790 | None:intergenic | 30.0% |
| ! | ATAACATTTTGTGCAGACAT+CGG | + | chr5_4:23811896-23811915 | None:intergenic | 30.0% |
| !! | TTTTTGGTATCTAATGTAGG+GGG | - | chr5_4:23811979-23811998 | Msa0845110:intron | 30.0% |
| !!! | AGATCTATGTCATTTTCATC+AGG | - | chr5_4:23812021-23812040 | Msa0845110:intron | 30.0% |
| !!! | GATCTATGTCATTTTCATCA+GGG | - | chr5_4:23812022-23812041 | Msa0845110:intron | 30.0% |
| TCATCTGATAAATCTTCTTC+AGG | + | chr5_4:23812075-23812094 | None:intergenic | 30.0% | |
| GAAGAAGATTTATCAGATGA+TGG | - | chr5_4:23812075-23812094 | Msa0845110:intron | 30.0% | |
| !!! | AGTTTTAGAGGTTTATGCAA+CGG | - | chr5_4:23812427-23812446 | Msa0845110:intron | 30.0% |
| CAACGTAATTAACTGAAGTT+TGG | - | chr5_4:23812496-23812515 | Msa0845110:intron | 30.0% | |
| GTCTTTACATATGACAAACA+AGG | + | chr5_4:23812526-23812545 | None:intergenic | 30.0% | |
| GTTTGTCATATGTAAAGACT+TGG | - | chr5_4:23812527-23812546 | Msa0845110:CDS | 30.0% | |
| CCTCAAGAACAATTATATTG+AGG | + | chr5_4:23813064-23813083 | None:intergenic | 30.0% | |
| CCTCAATATAATTGTTCTTG+AGG | - | chr5_4:23813061-23813080 | Msa0845110:intron | 30.0% | |
| TCTTTGACCATTTGAATTTC+TGG | + | chr5_4:23813429-23813448 | None:intergenic | 30.0% | |
| ! | AGTTTAAGCAACATGTTTTG+TGG | - | chr5_4:23813453-23813472 | Msa0845110:intron | 30.0% |
| TTTCGATTAAACGGTCTTTA+CGG | - | chr5_4:23813780-23813799 | Msa0845110:five_prime_UTR | 30.0% | |
| ! | CGAATAAGATGGAGAGTTTT+AGG | + | chr5_4:23811340-23811359 | None:intergenic | 35.0% |
| ! | CTCCATCTTATTCGATTTGA+AGG | - | chr5_4:23811346-23811365 | Msa0845110:three_prime_UTR | 35.0% |
| GTCCTTCAAATCGAATAAGA+TGG | + | chr5_4:23811351-23811370 | None:intergenic | 35.0% | |
| !! | ATGGTTGATGATGATCATCA+TGG | + | chr5_4:23811645-23811664 | None:intergenic | 35.0% |
| AGAATTGAGTTCAGTGAAGA+TGG | + | chr5_4:23811664-23811683 | None:intergenic | 35.0% | |
| ATTCTACCCCAAGATTATCA+TGG | - | chr5_4:23811679-23811698 | Msa0845110:CDS | 35.0% | |
| TGCATACCATGATAATCTTG+GGG | + | chr5_4:23811688-23811707 | None:intergenic | 35.0% | |
| ! | TTTTCATCAGGGATTGAACT+TGG | - | chr5_4:23812033-23812052 | Msa0845110:intron | 35.0% |
| !!! | CTTGAGAAGAGTTTTGAACT+TGG | - | chr5_4:23812150-23812169 | Msa0845110:intron | 35.0% |
| AACCTAGACAAGTTGCTATA+TGG | - | chr5_4:23812226-23812245 | Msa0845110:intron | 35.0% | |
| AACCATATAGCAACTTGTCT+AGG | + | chr5_4:23812231-23812250 | None:intergenic | 35.0% | |
| TTCAAAATAGAAGGGCTAGA+TGG | - | chr5_4:23812250-23812269 | Msa0845110:intron | 35.0% | |
| ! | AAACCTCAGCTTGAAGTTTT+TGG | + | chr5_4:23812365-23812384 | None:intergenic | 35.0% |
| TAGAGAATAGGTGAAAGGAA+AGG | + | chr5_4:23812844-23812863 | None:intergenic | 35.0% | |
| GATGTTAGAGAATAGGTGAA+AGG | + | chr5_4:23812849-23812868 | None:intergenic | 35.0% | |
| !! | TTCAGGTTGATTGATTCTGT+TGG | + | chr5_4:23813219-23813238 | None:intergenic | 35.0% |
| AACCTGAACAAAGAAACAGA+AGG | - | chr5_4:23813231-23813250 | Msa0845110:CDS | 35.0% | |
| ! | ATCCTTCTGTTTCTTTGTTC+AGG | + | chr5_4:23813236-23813255 | None:intergenic | 35.0% |
| GAACAGTTCAGATATCAAGT+TGG | - | chr5_4:23813275-23813294 | Msa0845110:CDS | 35.0% | |
| ! | AGCTTTTCCAAACTTCTTCA+AGG | - | chr5_4:23813403-23813422 | Msa0845110:intron | 35.0% |
| TTCAAGGCCAGAAATTCAAA+TGG | - | chr5_4:23813419-23813438 | Msa0845110:intron | 35.0% | |
| ! | AAGCAACATGTTTTGTGGTA+TGG | - | chr5_4:23813458-23813477 | Msa0845110:intron | 35.0% |
| TGAGGGATGCTTGAATCTAT+AGG | + | chr5_4:23811242-23811261 | None:intergenic | 40.0% | |
| !! | TAGCTGGTCTTGAAGATTTG+TGG | - | chr5_4:23811547-23811566 | Msa0845110:CDS | 40.0% |
| ! | TCATGCATTGTTGCTTGTCT+AGG | + | chr5_4:23811577-23811596 | None:intergenic | 40.0% |
| ACAAGCAACAATGCATGAGA+TGG | - | chr5_4:23811579-23811598 | Msa0845110:CDS | 40.0% | |
| ! | TGATGATCATCATGGTGATG+AGG | + | chr5_4:23811637-23811656 | None:intergenic | 40.0% |
| TGCACAAGACACATAGAGAT+TGG | + | chr5_4:23811934-23811953 | None:intergenic | 40.0% | |
| GATCTCTTCCCTAGAAATGA+TGG | + | chr5_4:23812006-23812025 | None:intergenic | 40.0% | |
| GAAGAAGAGGAGGCTTAATA+TGG | - | chr5_4:23812113-23812132 | Msa0845110:intron | 40.0% | |
| TAGATGGAAGACAAAGCAGT+TGG | - | chr5_4:23812266-23812285 | Msa0845110:intron | 40.0% | |
| GAACCAAAAACTTCAAGCTG+AGG | - | chr5_4:23812359-23812378 | Msa0845110:intron | 40.0% | |
| !! | TTGGTTCGGTTCTAATTTCG+TGG | + | chr5_4:23813145-23813164 | None:intergenic | 40.0% |
| GTATGTTGGTGTGTAGAAAG+AGG | + | chr5_4:23813330-23813349 | None:intergenic | 40.0% | |
| !! | AGGTTCTGCTTGTTGTATGT+TGG | + | chr5_4:23813344-23813363 | None:intergenic | 40.0% |
| !! | TTTCTGGCCTTGAAGAAGTT+TGG | + | chr5_4:23813413-23813432 | None:intergenic | 40.0% |
| ! | TGGATGATCAAGCTGGATTT+TGG | - | chr5_4:23813478-23813497 | Msa0845110:intron | 40.0% |
| AAATGTTGTTGCTCCAACCA+TGG | + | chr5_4:23813504-23813523 | None:intergenic | 40.0% | |
| GAATCCACTACACCTACTTA+TGG | - | chr5_4:23813710-23813729 | Msa0845110:five_prime_UTR | 40.0% | |
| TGACGTTTAGTGTAAGGGGA+TGG | + | chr5_4:23811053-23811072 | None:intergenic | 45.0% | |
| GTCTCTATTCGTCTTGAGCA+TGG | + | chr5_4:23811849-23811868 | None:intergenic | 45.0% | |
| TAGGGGGACCATCATTTCTA+GGG | - | chr5_4:23811995-23812014 | Msa0845110:intron | 45.0% | |
| !! | TCAGATGATGGATCACAAGC+TGG | - | chr5_4:23812087-23812106 | Msa0845110:intron | 45.0% |
| GTAATAAGCTTGAGCCTGAG+AGG | - | chr5_4:23812172-23812191 | Msa0845110:intron | 45.0% | |
| GAAAGAGGACTATCACTTGC+TGG | + | chr5_4:23813315-23813334 | None:intergenic | 45.0% | |
| TGTGGTATGGATGATCAAGC+TGG | - | chr5_4:23813471-23813490 | Msa0845110:intron | 45.0% | |
| !! | ATCAAGCTGGATTTTGGCCA+TGG | - | chr5_4:23813484-23813503 | Msa0845110:intron | 45.0% |
| TGCACCATAAGTAGGTGTAG+TGG | + | chr5_4:23813717-23813736 | None:intergenic | 45.0% | |
| ACGACGATTGCACCATAAGT+AGG | + | chr5_4:23813725-23813744 | None:intergenic | 45.0% | |
| ! | TAACGGATGTCACTGCTCAA+TGG | + | chr5_4:23813814-23813833 | None:intergenic | 45.0% |
| !!! | TTATTATTTTTTATAACAAT+GGG | - | chr5_4:23812679-23812698 | Msa0845110:CDS | 5.0% |
| !! | AATTAAAATTATCTAATTAT+TGG | + | chr5_4:23813164-23813183 | None:intergenic | 5.0% |
| GAAGAGAGAGAGAGAGAGAG+AGG | + | chr5_4:23811268-23811287 | None:intergenic | 50.0% | |
| GTAGGGGGACCATCATTTCT+AGG | - | chr5_4:23811994-23812013 | Msa0845110:intron | 50.0% | |
| CACAAGCTGGAGAGAAGAAG+AGG | - | chr5_4:23812100-23812119 | Msa0845110:intron | 50.0% | |
| AAGCTGGAGAGAAGAAGAGG+AGG | - | chr5_4:23812103-23812122 | Msa0845110:intron | 50.0% | |
| ! | GCAAGCTGCATTTTCCTCTC+AGG | + | chr5_4:23812189-23812208 | None:intergenic | 50.0% |
| CCTAGCAGAAGGTGGAAAGA+AGG | + | chr5_4:23813364-23813383 | None:intergenic | 50.0% | |
| CCTTCTTTCCACCTTCTGCT+AGG | - | chr5_4:23813361-23813380 | Msa0845110:intron | 50.0% | |
| AGCTGAGCAATTCCACCTGA+AGG | + | chr5_4:23813387-23813406 | None:intergenic | 50.0% | |
| !! | AGCTGGATTTTGGCCATGGT+TGG | - | chr5_4:23813488-23813507 | Msa0845110:five_prime_UTR | 50.0% |
| GAGAGAGAGAGAGGTGGTGA+GGG | + | chr5_4:23811259-23811278 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGAGGTGGTG+AGG | + | chr5_4:23811260-23811279 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGAGG+TGG | + | chr5_4:23811265-23811284 | None:intergenic | 55.0% | |
| TCGTGGCAAGAAACTGCGCA+TGG | + | chr5_4:23813128-23813147 | None:intergenic | 55.0% | |
| CCTGAAGGCCTAGCAGAAGG+TGG | + | chr5_4:23813372-23813391 | None:intergenic | 60.0% | |
| CCACCTTCTGCTAGGCCTTC+AGG | - | chr5_4:23813369-23813388 | Msa0845110:intron | 60.0% | |
| CCACCTGAAGGCCTAGCAGA+AGG | + | chr5_4:23813375-23813394 | None:intergenic | 60.0% | |
| CCTTCTGCTAGGCCTTCAGG+TGG | - | chr5_4:23813372-23813391 | Msa0845110:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 23811017 | 23813884 | 23811017 | ID=Msa0845110;Name=Msa0845110 |
| chr5_4 | mRNA | 23811017 | 23813884 | 23811017 | ID=Msa0845110-mRNA-1;Parent=Msa0845110;Name=Msa0845110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=440|1|1|1|0.66|0.5|4|354|277 |
| chr5_4 | exon | 23811017 | 23811709 | 23811017 | ID=Msa0845110-mRNA-1:exon:9733;Parent=Msa0845110-mRNA-1 |
| chr5_4 | exon | 23812521 | 23812903 | 23812521 | ID=Msa0845110-mRNA-1:exon:9732;Parent=Msa0845110-mRNA-1 |
| chr5_4 | exon | 23813201 | 23813355 | 23813201 | ID=Msa0845110-mRNA-1:exon:9731;Parent=Msa0845110-mRNA-1 |
| chr5_4 | exon | 23813488 | 23813884 | 23813488 | ID=Msa0845110-mRNA-1:exon:9730;Parent=Msa0845110-mRNA-1 |
| chr5_4 | five_prime_UTR | 23813488 | 23813884 | 23813488 | ID=Msa0845110-mRNA-1:five_prime_utr;Parent=Msa0845110-mRNA-1 |
| chr5_4 | five_prime_UTR | 23813313 | 23813355 | 23813313 | ID=Msa0845110-mRNA-1:five_prime_utr;Parent=Msa0845110-mRNA-1 |
| chr5_4 | CDS | 23813201 | 23813312 | 23813201 | ID=Msa0845110-mRNA-1:cds;Parent=Msa0845110-mRNA-1 |
| chr5_4 | CDS | 23812521 | 23812903 | 23812521 | ID=Msa0845110-mRNA-1:cds;Parent=Msa0845110-mRNA-1 |
| chr5_4 | CDS | 23811371 | 23811709 | 23811371 | ID=Msa0845110-mRNA-1:cds;Parent=Msa0845110-mRNA-1 |
| chr5_4 | three_prime_UTR | 23811017 | 23811370 | 23811017 | ID=Msa0845110-mRNA-1:three_prime_utr;Parent=Msa0845110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
