Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765270 | sp|Q8LC03|ATB13_ARATH | 63.322 | 289 | 90 | 6 | 4 | 277 | 7 | 294 | 8.37e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765270 | G7KB59 | 96.820 | 283 | 3 | 1 | 1 | 277 | 1 | 283 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0765270 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0765270 | 0.805240 | 1.468388e-49 | -8.615850e-47 |
| Msa0003720 | Msa0765270 | 0.818047 | 2.403770e-52 | -8.615850e-47 |
| Msa0027230 | Msa0765270 | 0.803593 | 3.237702e-49 | -8.615850e-47 |
| Msa0027820 | Msa0765270 | 0.829515 | 4.930860e-55 | -8.615850e-47 |
| Msa0035120 | Msa0765270 | 0.834137 | 3.565620e-56 | -8.615850e-47 |
| Msa0051020 | Msa0765270 | 0.803690 | 3.090229e-49 | -8.615850e-47 |
| Msa0061340 | Msa0765270 | 0.811165 | 8.025829e-51 | -8.615850e-47 |
| Msa0063890 | Msa0765270 | 0.827094 | 1.891131e-54 | -8.615850e-47 |
| Msa0069330 | Msa0765270 | 0.802577 | 5.251342e-49 | -8.615850e-47 |
| Msa0072720 | Msa0765270 | 0.801994 | 6.922179e-49 | -8.615850e-47 |
| Msa0081520 | Msa0765270 | 0.812939 | 3.293013e-51 | -8.615850e-47 |
| Msa0093850 | Msa0765270 | 0.823925 | 1.065023e-53 | -8.615850e-47 |
| Msa0101440 | Msa0765270 | 0.825333 | 4.962267e-54 | -8.615850e-47 |
| Msa0104550 | Msa0765270 | 0.801744 | 7.793241e-49 | -8.615850e-47 |
| Msa0108410 | Msa0765270 | 0.810592 | 1.067914e-50 | -8.615850e-47 |
| Msa0626450 | Msa0765270 | 0.829577 | 4.763422e-55 | -8.615850e-47 |
| Msa0626490 | Msa0765270 | 0.826836 | 2.179982e-54 | -8.615850e-47 |
| Msa0638480 | Msa0765270 | 0.816369 | 5.729808e-52 | -8.615850e-47 |
| Msa0664600 | Msa0765270 | 0.829624 | 4.637452e-55 | -8.615850e-47 |
| Msa0693330 | Msa0765270 | 0.842622 | 2.310862e-58 | -8.615850e-47 |
| Msa0707250 | Msa0765270 | 0.805646 | 1.207342e-49 | -8.615850e-47 |
| Msa0710800 | Msa0765270 | 0.818100 | 2.337405e-52 | -8.615850e-47 |
| Msa0725000 | Msa0765270 | 0.977647 | 3.354285e-144 | -8.615850e-47 |
| Msa0729100 | Msa0765270 | 0.841437 | 4.754195e-58 | -8.615850e-47 |
| Msa0738040 | Msa0765270 | 0.811395 | 7.151535e-51 | -8.615850e-47 |
| Msa0765270 | Msa0766930 | 0.820269 | 7.498185e-53 | -8.615850e-47 |
| Msa0765270 | Msa0788770 | 0.823856 | 1.105706e-53 | -8.615850e-47 |
| Msa0765270 | Msa0789100 | 0.800351 | 1.501378e-48 | -8.615850e-47 |
| Msa0765270 | Msa0790610 | 0.800478 | 1.414355e-48 | -8.615850e-47 |
| Msa0765270 | Msa0799000 | 0.804154 | 2.474811e-49 | -8.615850e-47 |
| Msa0765270 | Msa0807280 | 0.856265 | 3.616397e-62 | -8.615850e-47 |
| Msa0765270 | Msa0807820 | 0.868727 | 5.266160e-66 | -8.615850e-47 |
| Msa0765270 | Msa0815630 | 0.801021 | 1.095995e-48 | -8.615850e-47 |
| Msa0765270 | Msa0833530 | 0.802322 | 5.927579e-49 | -8.615850e-47 |
| Msa0765270 | Msa0845110 | 0.981628 | 4.691341e-153 | -8.615850e-47 |
| Msa0765270 | Msa0856050 | 0.827267 | 1.719753e-54 | -8.615850e-47 |
| Msa0765270 | Msa0861510 | 0.816996 | 4.146070e-52 | -8.615850e-47 |
| Msa0765270 | Msa0861600 | 0.814919 | 1.205501e-51 | -8.615850e-47 |
| Msa0765270 | Msa0866290 | 0.829493 | 4.991150e-55 | -8.615850e-47 |
| Msa0765270 | Msa0869780 | 0.802535 | 5.358490e-49 | -8.615850e-47 |
| Msa0765270 | Msa0873220 | 0.828875 | 7.048814e-55 | -8.615850e-47 |
| Msa0765270 | Msa0875290 | 0.800420 | 1.453549e-48 | -8.615850e-47 |
| Msa0765270 | Msa0938480 | 0.822564 | 2.214431e-53 | -8.615850e-47 |
| Msa0765270 | Msa0943440 | 0.806541 | 7.824923e-50 | -8.615850e-47 |
| Msa0765270 | Msa0967870 | 0.814079 | 1.849228e-51 | -8.615850e-47 |
| Msa0765270 | Msa0980140 | 0.842074 | 3.228159e-58 | -8.615850e-47 |
| Msa0765270 | Msa1029070 | 0.821702 | 3.507622e-53 | -8.615850e-47 |
| Msa0765270 | Msa1034500 | 0.808811 | 2.578416e-50 | -8.615850e-47 |
| Msa0765270 | Msa1043370 | 0.810543 | 1.093842e-50 | -8.615850e-47 |
| Msa0765270 | Msa1059960 | 0.820925 | 5.299992e-53 | -8.615850e-47 |
| Msa0765270 | Msa1079230 | 0.818582 | 1.817769e-52 | -8.615850e-47 |
| Msa0765270 | Msa1079860 | 0.803997 | 2.668631e-49 | -8.615850e-47 |
| Msa0765270 | Msa1087650 | 0.809208 | 2.119575e-50 | -8.615850e-47 |
| Msa0765270 | Msa1089450 | 0.828734 | 7.625095e-55 | -8.615850e-47 |
| Msa0765270 | Msa1095650 | 0.807804 | 4.226710e-50 | -8.615850e-47 |
| Msa0765270 | Msa1096960 | 0.800280 | 1.551765e-48 | -8.615850e-47 |
| Msa0765270 | Msa1101710 | 0.803421 | 3.513600e-49 | -8.615850e-47 |
| Msa0765270 | Msa1105160 | 0.816652 | 4.952021e-52 | -8.615850e-47 |
| Msa0765270 | Msa1113340 | 0.832638 | 8.431358e-56 | -8.615850e-47 |
| Msa0765270 | Msa1124110 | 0.811047 | 8.511570e-51 | -8.615850e-47 |
| Msa0765270 | Msa1130890 | 0.800570 | 1.354628e-48 | -8.615850e-47 |
| Msa0765270 | Msa1140220 | 0.806303 | 8.782542e-50 | -8.615850e-47 |
| Msa0765270 | Msa1156160 | 0.817755 | 2.796796e-52 | -8.615850e-47 |
| Msa0765270 | Msa1168950 | 0.807357 | 5.257453e-50 | -8.615850e-47 |
| Msa0765270 | Msa1169040 | 0.806333 | 8.656834e-50 | -8.615850e-47 |
| Msa0765270 | Msa1173300 | 0.809151 | 2.180413e-50 | -8.615850e-47 |
| Msa0765270 | Msa1183120 | 0.839653 | 1.393189e-57 | -8.615850e-47 |
| Msa0765270 | Msa1192090 | 0.819413 | 1.176830e-52 | -8.615850e-47 |
| Msa0765270 | Msa1213800 | 0.832283 | 1.032551e-55 | -8.615850e-47 |
| Msa0765270 | Msa1228200 | 0.808181 | 3.513730e-50 | -8.615850e-47 |
| Msa0765270 | Msa1229500 | 0.847148 | 1.388843e-59 | -8.615850e-47 |
| Msa0765270 | Msa1271990 | 0.840896 | 6.595892e-58 | -8.615850e-47 |
| Msa0765270 | Msa1276660 | 0.806224 | 9.127152e-50 | -8.615850e-47 |
| Msa0765270 | Msa1307600 | 0.805405 | 1.356025e-49 | -8.615850e-47 |
| Msa0765270 | Msa1307870 | 0.804191 | 2.431871e-49 | -8.615850e-47 |
| Msa0765270 | Msa1330420 | 0.802248 | 6.139291e-49 | -8.615850e-47 |
| Msa0765270 | Msa1348090 | 0.807803 | 4.228279e-50 | -8.615850e-47 |
| Msa0765270 | Msa1355450 | 0.825105 | 5.619248e-54 | -8.615850e-47 |
| Msa0765270 | Msa1369150 | 0.820665 | 6.084463e-53 | -8.615850e-47 |
| Msa0765270 | Msa1369690 | 0.808967 | 2.387499e-50 | -8.615850e-47 |
| Msa0765270 | Msa1371520 | 0.853942 | 1.711487e-61 | -8.615850e-47 |
| Msa0765270 | Msa1374060 | 0.820729 | 5.880339e-53 | -8.615850e-47 |
| Msa0765270 | Msa1382560 | 0.810804 | 9.606447e-51 | -8.615850e-47 |
| Msa0765270 | Msa1385890 | 0.822469 | 2.330104e-53 | -8.615850e-47 |
| Msa0765270 | Msa1387870 | 0.809642 | 1.710690e-50 | -8.615850e-47 |
| Msa0765270 | Msa1418240 | 0.827078 | 1.908267e-54 | -8.615850e-47 |
| Msa0765270 | Msa1419370 | 0.825181 | 5.391639e-54 | -8.615850e-47 |
| Msa0765270 | Msa1423350 | 0.811359 | 7.283341e-51 | -8.615850e-47 |
| Msa0765270 | Msa1425880 | 0.832483 | 9.211111e-56 | -8.615850e-47 |
| Msa0765270 | Msa1432500 | 0.810001 | 1.432049e-50 | -8.615850e-47 |
| Msa0765270 | Msa1440310 | 0.812672 | 3.768076e-51 | -8.615850e-47 |
| Msa0765270 | Msa1440960 | 0.830364 | 3.062077e-55 | -8.615850e-47 |
| Msa0765270 | Msa1446810 | 0.801401 | 9.161279e-49 | -8.615850e-47 |
| Msa0124060 | Msa0765270 | 0.807747 | 4.345314e-50 | -8.615850e-47 |
| Msa0131900 | Msa0765270 | 0.804079 | 2.565854e-49 | -8.615850e-47 |
| Msa0136650 | Msa0765270 | 0.815881 | 7.364400e-52 | -8.615850e-47 |
| Msa0138360 | Msa0765270 | 0.848335 | 6.544939e-60 | -8.615850e-47 |
| Msa0144360 | Msa0765270 | 0.840167 | 1.023276e-57 | -8.615850e-47 |
| Msa0146280 | Msa0765270 | 0.817518 | 3.162846e-52 | -8.615850e-47 |
| Msa0147980 | Msa0765270 | 0.826269 | 2.975793e-54 | -8.615850e-47 |
| Msa0152400 | Msa0765270 | 0.814089 | 1.839849e-51 | -8.615850e-47 |
| Msa0168500 | Msa0765270 | 0.815097 | 1.100435e-51 | -8.615850e-47 |
| Msa0173890 | Msa0765270 | 0.808562 | 2.913521e-50 | -8.615850e-47 |
| Msa0186010 | Msa0765270 | 0.804737 | 1.871145e-49 | -8.615850e-47 |
| Msa0188350 | Msa0765270 | 0.809351 | 1.975672e-50 | -8.615850e-47 |
| Msa0188890 | Msa0765270 | 0.800672 | 1.291268e-48 | -8.615850e-47 |
| Msa0214550 | Msa0765270 | 0.815096 | 1.101144e-51 | -8.615850e-47 |
| Msa0221000 | Msa0765270 | 0.824006 | 1.019596e-53 | -8.615850e-47 |
| Msa0225100 | Msa0765270 | 0.801815 | 7.536709e-49 | -8.615850e-47 |
| Msa0225680 | Msa0765270 | 0.812229 | 4.709671e-51 | -8.615850e-47 |
| Msa0231380 | Msa0765270 | 0.804201 | 2.420156e-49 | -8.615850e-47 |
| Msa0365100 | Msa0765270 | 0.823937 | 1.058431e-53 | -8.615850e-47 |
| Msa0367870 | Msa0765270 | 0.819786 | 9.674104e-53 | -8.615850e-47 |
| Msa0376630 | Msa0765270 | 0.815034 | 1.136601e-51 | -8.615850e-47 |
| Msa0378720 | Msa0765270 | 0.834500 | 2.891087e-56 | -8.615850e-47 |
| Msa0406770 | Msa0765270 | 0.828286 | 9.784092e-55 | -8.615850e-47 |
| Msa0410500 | Msa0765270 | 0.805962 | 1.036255e-49 | -8.615850e-47 |
| Msa0422850 | Msa0765270 | 0.814321 | 1.635339e-51 | -8.615850e-47 |
| Msa0422930 | Msa0765270 | 0.817995 | 2.469576e-52 | -8.615850e-47 |
| Msa0427100 | Msa0765270 | 0.815682 | 8.158538e-52 | -8.615850e-47 |
| Msa0427120 | Msa0765270 | 0.814556 | 1.450546e-51 | -8.615850e-47 |
| Msa0428920 | Msa0765270 | 0.811343 | 7.339894e-51 | -8.615850e-47 |
| Msa0430260 | Msa0765270 | 0.815138 | 1.077786e-51 | -8.615850e-47 |
| Msa0450400 | Msa0765270 | -0.819647 | 1.040615e-52 | -8.615850e-47 |
| Msa0460590 | Msa0765270 | 0.803129 | 4.038630e-49 | -8.615850e-47 |
| Msa0467430 | Msa0765270 | 0.804772 | 1.840344e-49 | -8.615850e-47 |
| Msa0473500 | Msa0765270 | 0.809840 | 1.550874e-50 | -8.615850e-47 |
| Msa0474730 | Msa0765270 | 0.838341 | 3.046563e-57 | -8.615850e-47 |
| Msa0479170 | Msa0765270 | 0.824310 | 8.653023e-54 | -8.615850e-47 |
| Msa0479200 | Msa0765270 | 0.863294 | 2.759634e-64 | -8.615850e-47 |
| Msa0240900 | Msa0765270 | 0.814623 | 1.402008e-51 | -8.615850e-47 |
| Msa0241830 | Msa0765270 | 0.802972 | 4.353190e-49 | -8.615850e-47 |
| Msa0244640 | Msa0765270 | 0.805114 | 1.560683e-49 | -8.615850e-47 |
| Msa0251710 | Msa0765270 | 0.800707 | 1.270054e-48 | -8.615850e-47 |
| Msa0251980 | Msa0765270 | 0.803303 | 3.718644e-49 | -8.615850e-47 |
| Msa0253290 | Msa0765270 | 0.830891 | 2.274106e-55 | -8.615850e-47 |
| Msa0259220 | Msa0765270 | 0.802197 | 6.288264e-49 | -8.615850e-47 |
| Msa0270660 | Msa0765270 | 0.804217 | 2.401238e-49 | -8.615850e-47 |
| Msa0279850 | Msa0765270 | 0.804833 | 1.786478e-49 | -8.615850e-47 |
| Msa0281430 | Msa0765270 | 0.814628 | 1.398412e-51 | -8.615850e-47 |
| Msa0281530 | Msa0765270 | 0.808568 | 2.905981e-50 | -8.615850e-47 |
| Msa0287740 | Msa0765270 | 0.811357 | 7.290959e-51 | -8.615850e-47 |
| Msa0288080 | Msa0765270 | 0.815100 | 1.098809e-51 | -8.615850e-47 |
| Msa0292120 | Msa0765270 | 0.808547 | 2.934913e-50 | -8.615850e-47 |
| Msa0292400 | Msa0765270 | 0.813801 | 2.129731e-51 | -8.615850e-47 |
| Msa0296250 | Msa0765270 | 0.834689 | 2.592473e-56 | -8.615850e-47 |
| Msa0300270 | Msa0765270 | 0.828636 | 8.053988e-55 | -8.615850e-47 |
| Msa0300320 | Msa0765270 | 0.820983 | 5.139274e-53 | -8.615850e-47 |
| Msa0317970 | Msa0765270 | 0.834490 | 2.908904e-56 | -8.615850e-47 |
| Msa0318700 | Msa0765270 | 0.819809 | 9.553857e-53 | -8.615850e-47 |
| Msa0320590 | Msa0765270 | 0.830196 | 3.364617e-55 | -8.615850e-47 |
| Msa0321620 | Msa0765270 | 0.802080 | 6.648060e-49 | -8.615850e-47 |
| Msa0322900 | Msa0765270 | 0.801659 | 8.110215e-49 | -8.615850e-47 |
| Msa0332640 | Msa0765270 | 0.800321 | 1.522728e-48 | -8.615850e-47 |
| Msa0335800 | Msa0765270 | 0.807089 | 5.992433e-50 | -8.615850e-47 |
| Msa0337700 | Msa0765270 | 0.823063 | 1.694573e-53 | -8.615850e-47 |
| Msa0341690 | Msa0765270 | 0.816259 | 6.063885e-52 | -8.615850e-47 |
| Msa0357990 | Msa0765270 | 0.813534 | 2.437784e-51 | -8.615850e-47 |
| Msa0360210 | Msa0765270 | 0.828158 | 1.049982e-54 | -8.615850e-47 |
| Msa0485240 | Msa0765270 | 0.823705 | 1.199524e-53 | -8.615850e-47 |
| Msa0500380 | Msa0765270 | 0.807841 | 4.150794e-50 | -8.615850e-47 |
| Msa0518030 | Msa0765270 | 0.818511 | 1.886870e-52 | -8.615850e-47 |
| Msa0527190 | Msa0765270 | 0.849625 | 2.868376e-60 | -8.615850e-47 |
| Msa0527860 | Msa0765270 | 0.808545 | 2.938460e-50 | -8.615850e-47 |
| Msa0572840 | Msa0765270 | 0.825710 | 4.041316e-54 | -8.615850e-47 |
| Msa0581690 | Msa0765270 | 0.800566 | 1.357033e-48 | -8.615850e-47 |
| Msa0597790 | Msa0765270 | 0.811016 | 8.644251e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765270 | MtrunA17_Chr5g0416391 | 96.820 | 283 | 3 | 1 | 1 | 277 | 1 | 283 | 0.0 | 563 |
| Msa0765270 | MtrunA17_Chr8g0362151 | 81.119 | 286 | 38 | 7 | 4 | 277 | 1 | 282 | 2.73e-149 | 419 |
| Msa0765270 | MtrunA17_Chr6g0453021 | 52.218 | 293 | 85 | 11 | 11 | 275 | 9 | 274 | 1.15e-81 | 247 |
| Msa0765270 | MtrunA17_Chr7g0217111 | 51.087 | 276 | 121 | 8 | 4 | 270 | 1 | 271 | 5.09e-77 | 235 |
| Msa0765270 | MtrunA17_Chr8g0381741 | 44.886 | 176 | 88 | 3 | 65 | 238 | 40 | 208 | 4.64e-39 | 138 |
| Msa0765270 | MtrunA17_Chr6g0450991 | 64.000 | 100 | 36 | 0 | 73 | 172 | 63 | 162 | 6.18e-38 | 135 |
| Msa0765270 | MtrunA17_Chr5g0415941 | 51.634 | 153 | 67 | 3 | 23 | 172 | 34 | 182 | 1.53e-37 | 135 |
| Msa0765270 | MtrunA17_Chr3g0123691 | 57.500 | 120 | 48 | 1 | 64 | 180 | 47 | 166 | 1.74e-37 | 134 |
| Msa0765270 | MtrunA17_Chr3g0119291 | 54.225 | 142 | 54 | 2 | 62 | 192 | 44 | 185 | 2.08e-37 | 132 |
| Msa0765270 | MtrunA17_Chr4g0060031 | 54.688 | 128 | 54 | 1 | 45 | 172 | 67 | 190 | 8.52e-37 | 133 |
| Msa0765270 | MtrunA17_Chr8g0362751 | 50.641 | 156 | 65 | 2 | 28 | 172 | 30 | 184 | 1.42e-36 | 131 |
| Msa0765270 | MtrunA17_Chr7g0265521 | 50.926 | 108 | 46 | 1 | 65 | 172 | 51 | 151 | 1.40e-30 | 114 |
| Msa0765270 | MtrunA17_Chr1g0179581 | 54.167 | 96 | 41 | 2 | 62 | 156 | 14 | 107 | 7.45e-26 | 98.6 |
| Msa0765270 | MtrunA17_Chr3g0127511 | 53.846 | 91 | 42 | 0 | 79 | 169 | 40 | 130 | 8.97e-26 | 102 |
| Msa0765270 | MtrunA17_Chr8g0346251 | 41.322 | 121 | 71 | 0 | 51 | 171 | 15 | 135 | 2.32e-23 | 95.5 |
| Msa0765270 | MtrunA17_Chr4g0054421 | 47.573 | 103 | 52 | 1 | 62 | 164 | 114 | 214 | 6.52e-21 | 89.7 |
| Msa0765270 | MtrunA17_Chr4g0055851 | 45.545 | 101 | 54 | 1 | 65 | 164 | 107 | 207 | 5.15e-20 | 87.4 |
| Msa0765270 | MtrunA17_Chr5g0403701 | 48.889 | 90 | 46 | 0 | 77 | 166 | 53 | 142 | 3.01e-19 | 83.6 |
| Msa0765270 | MtrunA17_Chr5g0403691 | 47.872 | 94 | 49 | 0 | 77 | 170 | 53 | 146 | 3.51e-19 | 84.0 |
| Msa0765270 | MtrunA17_Chr7g0258831 | 45.283 | 106 | 54 | 1 | 69 | 174 | 152 | 253 | 7.11e-19 | 84.3 |
| Msa0765270 | MtrunA17_Chr5g0400781 | 45.000 | 100 | 55 | 0 | 69 | 168 | 115 | 214 | 8.33e-19 | 84.0 |
| Msa0765270 | MtrunA17_Chr2g0308611 | 40.833 | 120 | 70 | 1 | 45 | 164 | 169 | 287 | 1.07e-18 | 84.3 |
| Msa0765270 | MtrunA17_Chr1g0175651 | 46.875 | 96 | 51 | 0 | 69 | 164 | 146 | 241 | 1.15e-18 | 84.0 |
| Msa0765270 | MtrunA17_Chr5g0399491 | 40.323 | 124 | 74 | 0 | 41 | 164 | 100 | 223 | 1.32e-18 | 83.6 |
| Msa0765270 | MtrunA17_Chr8g0335131 | 48.913 | 92 | 47 | 0 | 77 | 168 | 146 | 237 | 1.73e-18 | 83.6 |
| Msa0765270 | MtrunA17_Chr1g0151971 | 38.889 | 144 | 81 | 2 | 27 | 164 | 75 | 217 | 3.67e-18 | 82.4 |
| Msa0765270 | MtrunA17_Chr4g0071411 | 44.706 | 85 | 47 | 0 | 80 | 164 | 91 | 175 | 2.73e-16 | 75.9 |
| Msa0765270 | MtrunA17_Chr4g0044091 | 46.591 | 88 | 47 | 0 | 77 | 164 | 65 | 152 | 9.60e-16 | 73.9 |
| Msa0765270 | MtrunA17_Chr3g0135331 | 43.617 | 94 | 53 | 0 | 55 | 148 | 123 | 216 | 1.18e-15 | 75.5 |
| Msa0765270 | MtrunA17_Chr2g0299031 | 38.182 | 110 | 65 | 1 | 58 | 164 | 60 | 169 | 9.43e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765270 | AT1G69780.1 | 63.322 | 289 | 90 | 6 | 4 | 277 | 7 | 294 | 8.51e-118 | 340 |
| Msa0765270 | AT1G26960.1 | 57.500 | 280 | 81 | 11 | 4 | 277 | 8 | 255 | 3.43e-94 | 278 |
| Msa0765270 | AT3G01220.1 | 49.635 | 274 | 117 | 8 | 3 | 270 | 15 | 273 | 2.52e-76 | 234 |
| Msa0765270 | AT5G15150.1 | 45.205 | 292 | 124 | 11 | 3 | 270 | 21 | 300 | 3.95e-66 | 209 |
| Msa0765270 | AT5G65310.2 | 50.602 | 166 | 75 | 3 | 65 | 223 | 39 | 204 | 1.76e-41 | 145 |
| Msa0765270 | AT5G65310.1 | 50.602 | 166 | 75 | 3 | 65 | 223 | 57 | 222 | 3.72e-41 | 144 |
| Msa0765270 | AT4G40060.1 | 61.947 | 113 | 41 | 1 | 76 | 186 | 58 | 170 | 1.41e-37 | 134 |
| Msa0765270 | AT2G22430.1 | 67.010 | 97 | 32 | 0 | 76 | 172 | 61 | 157 | 3.16e-37 | 134 |
| Msa0765270 | AT3G01470.1 | 63.000 | 100 | 37 | 0 | 73 | 172 | 64 | 163 | 1.89e-36 | 131 |
| Msa0765270 | AT1G27045.1 | 40.625 | 192 | 96 | 5 | 11 | 195 | 12 | 192 | 1.55e-29 | 112 |
| Msa0765270 | AT1G27045.5 | 45.517 | 145 | 72 | 2 | 58 | 195 | 5 | 149 | 1.09e-27 | 105 |
| Msa0765270 | AT1G27045.3 | 45.517 | 145 | 72 | 2 | 58 | 195 | 5 | 149 | 1.09e-27 | 105 |
| Msa0765270 | AT1G27045.4 | 43.312 | 157 | 77 | 4 | 11 | 166 | 12 | 157 | 1.62e-27 | 107 |
| Msa0765270 | AT1G27045.2 | 48.800 | 125 | 58 | 1 | 77 | 195 | 17 | 141 | 4.57e-27 | 103 |
| Msa0765270 | AT2G46680.1 | 52.688 | 93 | 44 | 0 | 78 | 170 | 33 | 125 | 2.52e-26 | 104 |
| Msa0765270 | AT2G46680.2 | 53.333 | 90 | 42 | 0 | 78 | 167 | 33 | 122 | 1.57e-25 | 102 |
| Msa0765270 | AT5G03790.1 | 38.356 | 146 | 78 | 1 | 19 | 164 | 31 | 164 | 3.62e-24 | 97.8 |
| Msa0765270 | AT3G61890.1 | 51.111 | 90 | 44 | 0 | 80 | 169 | 33 | 122 | 3.70e-24 | 97.8 |
| Msa0765270 | AT5G03790.2 | 40.000 | 130 | 66 | 1 | 19 | 148 | 31 | 148 | 4.84e-23 | 94.0 |
| Msa0765270 | AT2G18550.1 | 35.354 | 198 | 96 | 6 | 20 | 205 | 7 | 184 | 1.08e-22 | 93.6 |
| Msa0765270 | AT4G36740.2 | 48.544 | 103 | 46 | 1 | 68 | 170 | 47 | 142 | 1.54e-21 | 90.5 |
| Msa0765270 | AT4G36740.1 | 48.544 | 103 | 46 | 1 | 68 | 170 | 46 | 141 | 1.62e-21 | 90.5 |
| Msa0765270 | AT2G36610.1 | 41.379 | 116 | 58 | 2 | 59 | 166 | 55 | 168 | 4.08e-21 | 88.6 |
| Msa0765270 | AT5G66700.1 | 46.552 | 116 | 53 | 2 | 64 | 172 | 60 | 173 | 8.57e-21 | 88.6 |
| Msa0765270 | AT5G53980.1 | 45.545 | 101 | 55 | 0 | 72 | 172 | 6 | 106 | 2.23e-20 | 85.9 |
| Msa0765270 | AT3G60390.1 | 45.545 | 101 | 55 | 0 | 64 | 164 | 149 | 249 | 5.32e-19 | 85.5 |
| Msa0765270 | AT4G37790.1 | 45.000 | 100 | 55 | 0 | 65 | 164 | 114 | 213 | 2.50e-18 | 82.8 |
| Msa0765270 | AT5G47370.1 | 43.434 | 99 | 56 | 0 | 66 | 164 | 119 | 217 | 3.15e-18 | 82.8 |
| Msa0765270 | AT2G01430.1 | 44.554 | 101 | 56 | 0 | 64 | 164 | 126 | 226 | 1.21e-17 | 80.9 |
| Msa0765270 | AT5G06710.1 | 44.792 | 96 | 53 | 0 | 69 | 164 | 182 | 277 | 1.41e-17 | 81.6 |
| Msa0765270 | AT2G22800.1 | 44.792 | 96 | 53 | 0 | 69 | 164 | 105 | 200 | 3.45e-17 | 79.7 |
| Msa0765270 | AT4G17460.1 | 42.708 | 96 | 55 | 0 | 69 | 164 | 127 | 222 | 1.25e-16 | 78.2 |
| Msa0765270 | AT2G44910.1 | 46.591 | 88 | 47 | 0 | 77 | 164 | 163 | 250 | 2.84e-16 | 77.8 |
| Msa0765270 | AT1G70920.1 | 37.600 | 125 | 69 | 2 | 56 | 180 | 50 | 165 | 1.14e-14 | 71.6 |
| Msa0765270 | AT1G70920.2 | 37.600 | 125 | 69 | 2 | 56 | 180 | 20 | 135 | 2.24e-14 | 70.1 |
| Msa0765270 | AT4G16780.1 | 40.625 | 96 | 57 | 0 | 69 | 164 | 121 | 216 | 3.83e-14 | 71.2 |
| Msa0765270 | AT2G01430.2 | 51.515 | 66 | 32 | 0 | 64 | 129 | 126 | 191 | 9.98e-13 | 66.2 |
| Msa0765270 | AT5G06710.4 | 51.667 | 60 | 29 | 0 | 69 | 128 | 182 | 241 | 1.67e-11 | 63.5 |
Find 67 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTGACCATTTGAATTTC+TGG | 0.030649 | 5_2:-25951206 | None:intergenic |
| ATTTATCTCTTTAAAATTAA+TGG | 0.144739 | 5_2:-25951530 | None:intergenic |
| ATCCTTCTGTTTCTTTGTTC+AGG | 0.195256 | 5_2:-25951013 | None:intergenic |
| AACATTTCAATTGAATTAAA+AGG | 0.215413 | 5_2:+25951297 | Msa0765270:exon |
| CCACCTTCTGCTAGGCCTTC+AGG | 0.235321 | 5_2:+25951149 | Msa0765270:CDS |
| TGGATGATCAAGCTGGATTT+TGG | 0.257444 | 5_2:+25951258 | Msa0765270:CDS |
| TTTCTGGCCTTGAAGAAGTT+TGG | 0.289017 | 5_2:-25951190 | None:intergenic |
| TTTCGATTAAACGGTCTTTA+CGG | 0.293933 | 5_2:+25951560 | Msa0765270:three_prime_UTR |
| CTCCATCTTATTCGATTTGA+AGG | 0.313747 | 5_2:+25949128 | Msa0765270:five_prime_UTR |
| GAAGAAGAGGAGGCTTAATA+TGG | 0.330137 | 5_2:+25949893 | Msa0765270:CDS |
| AACCTAGACAAGTTGCTATA+TGG | 0.331625 | 5_2:+25950006 | Msa0765270:CDS |
| TATAGCTTACATACAATAAA+GGG | 0.333373 | 5_2:+25948948 | Msa0765270:five_prime_UTR |
| CTATATGGTTTCAAAATAGA+AGG | 0.336540 | 5_2:+25950021 | Msa0765270:CDS |
| TTTATATATGAATGAATAAA+GGG | 0.350520 | 5_2:+25951641 | Msa0765270:three_prime_UTR |
| GTATAGCTTACATACAATAA+AGG | 0.353034 | 5_2:+25948947 | Msa0765270:five_prime_UTR |
| TTGTTTAATGTGAAATCAAA+AGG | 0.361082 | 5_2:+25951355 | Msa0765270:three_prime_UTR |
| TTAAAATGACGTTTAGTGTA+AGG | 0.382650 | 5_2:-25948832 | None:intergenic |
| TATGCATACCATGATAATCT+TGG | 0.383501 | 5_2:-25949469 | None:intergenic |
| ATGCATACCATGATAATCTT+GGG | 0.394882 | 5_2:-25949468 | None:intergenic |
| TCATGCATTGTTGCTTGTCT+AGG | 0.398751 | 5_2:-25949356 | None:intergenic |
| GAATCCACTACACCTACTTA+TGG | 0.399350 | 5_2:+25951490 | Msa0765270:three_prime_UTR |
| TCATCTGATAAATCTTCTTC+AGG | 0.406192 | 5_2:-25949852 | None:intergenic |
| AGAATTGAGTTCAGTGAAGA+TGG | 0.417198 | 5_2:-25949443 | None:intergenic |
| TAGCTGGTCTTGAAGATTTG+TGG | 0.429766 | 5_2:+25949329 | Msa0765270:five_prime_UTR |
| GAAAGAGGACTATCACTTGC+TGG | 0.446270 | 5_2:-25951092 | None:intergenic |
| TTCAAAATAGAAGGGCTAGA+TGG | 0.455440 | 5_2:+25950030 | Msa0765270:CDS |
| CCTTCTTTCCACCTTCTGCT+AGG | 0.463390 | 5_2:+25951141 | Msa0765270:CDS |
| TTCAGGTTGATTGATTCTGT+TGG | 0.470903 | 5_2:-25950996 | None:intergenic |
| TTTGTAGCATGAAATTTGCT+TGG | 0.480428 | 5_2:-25949391 | None:intergenic |
| TGTTTAATGTGAAATCAAAA+GGG | 0.486923 | 5_2:+25951356 | Msa0765270:three_prime_UTR |
| GAAGAAGATTTATCAGATGA+TGG | 0.491350 | 5_2:+25949855 | Msa0765270:CDS |
| GTCCTTCAAATCGAATAAGA+TGG | 0.494060 | 5_2:-25949130 | None:intergenic |
| CCTAGCAGAAGGTGGAAAGA+AGG | 0.498274 | 5_2:-25951141 | None:intergenic |
| TTCAAGGCCAGAAATTCAAA+TGG | 0.500653 | 5_2:+25951199 | Msa0765270:CDS |
| GATCTCTTCCCTAGAAATGA+TGG | 0.506735 | 5_2:-25949783 | None:intergenic |
| TAAAATGACGTTTAGTGTAA+GGG | 0.507051 | 5_2:-25948831 | None:intergenic |
| TATATATGATATCAGATAGC+TGG | 0.509537 | 5_2:+25949313 | Msa0765270:intron |
| TCTTATGTAAATATTTGGAA+AGG | 0.514879 | 5_2:-25949082 | None:intergenic |
| ACGACGATTGCACCATAAGT+AGG | 0.527935 | 5_2:-25951502 | None:intergenic |
| TGACGTTTAGTGTAAGGGGA+TGG | 0.531984 | 5_2:-25948826 | None:intergenic |
| AGGTTCTGCTTGTTGTATGT+TGG | 0.535809 | 5_2:-25951121 | None:intergenic |
| TCAGATGATGGATCACAAGC+TGG | 0.546396 | 5_2:+25949867 | Msa0765270:CDS |
| ATTCTACCCCAAGATTATCA+TGG | 0.549074 | 5_2:+25949461 | Msa0765270:CDS |
| TAACGGATGTCACTGCTCAA+TGG | 0.551390 | 5_2:-25951591 | None:intergenic |
| CACAAGCTGGAGAGAAGAAG+AGG | 0.557400 | 5_2:+25949880 | Msa0765270:CDS |
| AGCTGAGCAATTCCACCTGA+AGG | 0.558857 | 5_2:-25951164 | None:intergenic |
| TGTGGTATGGATGATCAAGC+TGG | 0.559995 | 5_2:+25951251 | Msa0765270:CDS |
| AAAATGACGTTTAGTGTAAG+GGG | 0.562850 | 5_2:-25948830 | None:intergenic |
| TGAGGGATGCTTGAATCTAT+AGG | 0.568000 | 5_2:-25949015 | None:intergenic |
| AACCATATAGCAACTTGTCT+AGG | 0.569003 | 5_2:-25950008 | None:intergenic |
| TATATGGTTTCAAAATAGAA+GGG | 0.590755 | 5_2:+25950022 | Msa0765270:CDS |
| AAATGTTGTTGCTCCAACCA+TGG | 0.592621 | 5_2:-25951281 | None:intergenic |
| CCACCTGAAGGCCTAGCAGA+AGG | 0.595631 | 5_2:-25951152 | None:intergenic |
| ACAAGCAACAATGCATGAGA+TGG | 0.601705 | 5_2:+25949361 | Msa0765270:exon |
| CCTGAAGGCCTAGCAGAAGG+TGG | 0.606372 | 5_2:-25951149 | None:intergenic |
| GTAATAAGCTTGAGCCTGAG+AGG | 0.611232 | 5_2:+25949952 | Msa0765270:CDS |
| AAGCTGGAGAGAAGAAGAGG+AGG | 0.613532 | 5_2:+25949883 | Msa0765270:CDS |
| TGCACCATAAGTAGGTGTAG+TGG | 0.615352 | 5_2:-25951494 | None:intergenic |
| GAACAGTTCAGATATCAAGT+TGG | 0.615882 | 5_2:+25951055 | Msa0765270:CDS |
| TAGATGGAAGACAAAGCAGT+TGG | 0.627956 | 5_2:+25950046 | Msa0765270:CDS |
| TGCATACCATGATAATCTTG+GGG | 0.632466 | 5_2:-25949467 | None:intergenic |
| CCTTCTGCTAGGCCTTCAGG+TGG | 0.640058 | 5_2:+25951152 | Msa0765270:CDS |
| ATAGCTTACATACAATAAAG+GGG | 0.647435 | 5_2:+25948949 | Msa0765270:five_prime_UTR |
| ATGGTTGATGATGATCATCA+TGG | 0.653135 | 5_2:-25949424 | None:intergenic |
| GTATGTTGGTGTGTAGAAAG+AGG | 0.664598 | 5_2:-25951107 | None:intergenic |
| TGATGATCATCATGGTGATG+AGG | 0.679615 | 5_2:-25949416 | None:intergenic |
| AACCTGAACAAAGAAACAGA+AGG | 0.692102 | 5_2:+25951011 | Msa0765270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGTGATATATA+TGG | + | chr5_2:25948977-25948996 | Msa0765270:five_prime_UTR | 10.0% |
| !! | TAAAGTACAATATATTTAAT+TGG | - | chr5_2:25950406-25950425 | None:intergenic | 10.0% |
| !!! | GTTATTATTTTTTATAACAA+TGG | + | chr5_2:25950458-25950477 | Msa0765270:intron | 10.0% |
| !!! | ATTTATCTCTTTAAAATTAA+TGG | - | chr5_2:25951533-25951552 | None:intergenic | 10.0% |
| !!! | TTTTATATATGAATGAATAA+AGG | + | chr5_2:25951640-25951659 | Msa0765270:three_prime_UTR | 10.0% |
| !! | TTTATATATGAATGAATAAA+GGG | + | chr5_2:25951641-25951660 | Msa0765270:three_prime_UTR | 10.0% |
| !!! | TTTTATGTGCATAAATAAAA+AGG | - | chr5_2:25948895-25948914 | None:intergenic | 15.0% |
| !!! | CTTTTTCTTATGTAAATATT+TGG | - | chr5_2:25949090-25949109 | None:intergenic | 15.0% |
| !!! | TTCTTTGAAAATTAATATCT+TGG | + | chr5_2:25949222-25949241 | Msa0765270:intron | 15.0% |
| !!! | GGTTAATTTTTTTTTTGTAA+CGG | - | chr5_2:25950349-25950368 | None:intergenic | 15.0% |
| !! | TTTGTAGAAATAATACTATT+TGG | + | chr5_2:25950536-25950555 | Msa0765270:intron | 15.0% |
| !!! | ATCTTGATTAATTTACTTTT+AGG | - | chr5_2:25950682-25950701 | None:intergenic | 15.0% |
| !!! | AAATTATCTAATTATTGGTT+CGG | - | chr5_2:25950939-25950958 | None:intergenic | 15.0% |
| !!! | TTTTAATTTGTTACAGATAT+TGG | + | chr5_2:25950956-25950975 | Msa0765270:intron | 15.0% |
| !! | AACATTTCAATTGAATTAAA+AGG | + | chr5_2:25951297-25951316 | Msa0765270:exon | 15.0% |
| !!! | AATTTAAACTTTTCAAAACA+AGG | - | chr5_2:25951424-25951443 | None:intergenic | 15.0% |
| !! | TATAGCTTACATACAATAAA+GGG | + | chr5_2:25948948-25948967 | Msa0765270:five_prime_UTR | 20.0% |
| !! | TCTTATGTAAATATTTGGAA+AGG | - | chr5_2:25949085-25949104 | None:intergenic | 20.0% |
| !!! | CATTTCCAGTTTTTTTTTAA+CGG | + | chr5_2:25949581-25949600 | Msa0765270:intron | 20.0% |
| !!! | TAAACTGAAACTCTTATTTT+TGG | + | chr5_2:25949743-25949762 | Msa0765270:intron | 20.0% |
| !!! | TTATTTTTGGTATCTAATGT+AGG | + | chr5_2:25949756-25949775 | Msa0765270:intron | 20.0% |
| !!! | TATTTTTGGTATCTAATGTA+GGG | + | chr5_2:25949757-25949776 | Msa0765270:intron | 20.0% |
| !! | TATATGGTTTCAAAATAGAA+GGG | + | chr5_2:25950022-25950041 | Msa0765270:CDS | 20.0% |
| !!! | CTATTATATTACAGTTTTAG+AGG | + | chr5_2:25950195-25950214 | Msa0765270:intron | 20.0% |
| !!! | ATGAGTATGATTTTGAATTT+CGG | - | chr5_2:25950370-25950389 | None:intergenic | 20.0% |
| !!! | TTAATTTACTTTTAGGTGAT+TGG | - | chr5_2:25950675-25950694 | None:intergenic | 20.0% |
| !! | TGAAGTGAAAATAAAATCAT+TGG | - | chr5_2:25950705-25950724 | None:intergenic | 20.0% |
| !!! | TCTCTAGAAACTTTATAATA+TGG | - | chr5_2:25950785-25950804 | None:intergenic | 20.0% |
| !! | TTGTTTAATGTGAAATCAAA+AGG | + | chr5_2:25951355-25951374 | Msa0765270:three_prime_UTR | 20.0% |
| !! | TGTTTAATGTGAAATCAAAA+GGG | + | chr5_2:25951356-25951375 | Msa0765270:three_prime_UTR | 20.0% |
| !!! | ATGTTTTTCTTTCGATTAAA+CGG | + | chr5_2:25951551-25951570 | Msa0765270:three_prime_UTR | 20.0% |
| ! | TAAAATGACGTTTAGTGTAA+GGG | - | chr5_2:25948834-25948853 | None:intergenic | 25.0% |
| ! | TTAAAATGACGTTTAGTGTA+AGG | - | chr5_2:25948835-25948854 | None:intergenic | 25.0% |
| ! | AGCATTTGTAGAAAAAATTG+AGG | - | chr5_2:25948868-25948887 | None:intergenic | 25.0% |
| ! | GTATAGCTTACATACAATAA+AGG | + | chr5_2:25948947-25948966 | Msa0765270:five_prime_UTR | 25.0% |
| ! | ATAGCTTACATACAATAAAG+GGG | + | chr5_2:25948949-25948968 | Msa0765270:five_prime_UTR | 25.0% |
| ! | TATATATGATATCAGATAGC+TGG | + | chr5_2:25949313-25949332 | Msa0765270:intron | 25.0% |
| ! | ATGCATATCATGATAATCTT+GGG | - | chr5_2:25949519-25949538 | None:intergenic | 25.0% |
| ! | TATGCATATCATGATAATCT+TGG | - | chr5_2:25949520-25949539 | None:intergenic | 25.0% |
| !! | TTTTGCCGTTAAAAAAAAAC+TGG | - | chr5_2:25949589-25949608 | None:intergenic | 25.0% |
| !!! | ATGTTTTTAATCTCTGATAC+TGG | - | chr5_2:25949651-25949670 | None:intergenic | 25.0% |
| ! | TCAGAGATTAAAAACATTTC+CGG | + | chr5_2:25949654-25949673 | Msa0765270:intron | 25.0% |
| !!! | ATTTTTGGTATCTAATGTAG+GGG | + | chr5_2:25949758-25949777 | Msa0765270:intron | 25.0% |
| ! | CTATATGGTTTCAAAATAGA+AGG | + | chr5_2:25950021-25950040 | Msa0765270:CDS | 25.0% |
| !!! | TAAAGTTGATGTTAGAGAAT+AGG | - | chr5_2:25950636-25950655 | None:intergenic | 25.0% |
| ! | ATGACTTCTTTCTCTTAAAT+AGG | + | chr5_2:25950725-25950744 | Msa0765270:intron | 25.0% |
| !! | TAAGATGAGACATTTTTATG+TGG | - | chr5_2:25950762-25950781 | None:intergenic | 25.0% |
| !!! | ACATCCGTTATTTATTTTTG+CGG | + | chr5_2:25951604-25951623 | Msa0765270:three_prime_UTR | 25.0% |
| ! | AACTCCGCAAAAATAAATAA+CGG | - | chr5_2:25951611-25951630 | None:intergenic | 25.0% |
| AAAATGACGTTTAGTGTAAG+GGG | - | chr5_2:25948833-25948852 | None:intergenic | 30.0% | |
| AACAAGTGACAAAGACAATA+AGG | - | chr5_2:25949204-25949223 | None:intergenic | 30.0% | |
| ! | TTTGTAGCATGAAATTTGCT+TGG | - | chr5_2:25949394-25949413 | None:intergenic | 30.0% |
| ATGCATACCATGATAATCTT+GGG | - | chr5_2:25949471-25949490 | None:intergenic | 30.0% | |
| TATGCATACCATGATAATCT+TGG | - | chr5_2:25949472-25949491 | None:intergenic | 30.0% | |
| TGCATATCATGATAATCTTG+GGG | - | chr5_2:25949518-25949537 | None:intergenic | 30.0% | |
| !!! | ATGATGTTTTGATGCAACAT+AGG | - | chr5_2:25949553-25949572 | None:intergenic | 30.0% |
| !! | TTTTTGGTATCTAATGTAGG+GGG | + | chr5_2:25949759-25949778 | Msa0765270:intron | 30.0% |
| !!! | AGATCTATGTCATTTTCATC+AGG | + | chr5_2:25949801-25949820 | Msa0765270:CDS | 30.0% |
| !!! | GATCTATGTCATTTTCATCA+GGG | + | chr5_2:25949802-25949821 | Msa0765270:CDS | 30.0% |
| TCATCTGATAAATCTTCTTC+AGG | - | chr5_2:25949855-25949874 | None:intergenic | 30.0% | |
| GAAGAAGATTTATCAGATGA+TGG | + | chr5_2:25949855-25949874 | Msa0765270:CDS | 30.0% | |
| !!! | AGTTTTAGAGGTTTATGCAA+CGG | + | chr5_2:25950207-25950226 | Msa0765270:intron | 30.0% |
| CAACGTAATTAACTGAAGTT+TGG | + | chr5_2:25950276-25950295 | Msa0765270:intron | 30.0% | |
| GTCTTTACATATGACAAACA+AGG | - | chr5_2:25950306-25950325 | None:intergenic | 30.0% | |
| GTTTGTCATATGTAAAGACT+TGG | + | chr5_2:25950307-25950326 | Msa0765270:intron | 30.0% | |
| CCTCAAGAACAATTATATTG+AGG | - | chr5_2:25950844-25950863 | None:intergenic | 30.0% | |
| CCTCAATATAATTGTTCTTG+AGG | + | chr5_2:25950841-25950860 | Msa0765270:intron | 30.0% | |
| TCTTTGACCATTTGAATTTC+TGG | - | chr5_2:25951209-25951228 | None:intergenic | 30.0% | |
| ! | AGTTTAAGCAACATGTTTTG+TGG | + | chr5_2:25951233-25951252 | Msa0765270:CDS | 30.0% |
| TTTCGATTAAACGGTCTTTA+CGG | + | chr5_2:25951560-25951579 | Msa0765270:three_prime_UTR | 30.0% | |
| ! | CGAATAAGATGGAGAGTTTT+AGG | - | chr5_2:25949122-25949141 | None:intergenic | 35.0% |
| ! | CTCCATCTTATTCGATTTGA+AGG | + | chr5_2:25949128-25949147 | Msa0765270:five_prime_UTR | 35.0% |
| GTCCTTCAAATCGAATAAGA+TGG | - | chr5_2:25949133-25949152 | None:intergenic | 35.0% | |
| !! | ATGGTTGATGATGATCATCA+TGG | - | chr5_2:25949427-25949446 | None:intergenic | 35.0% |
| AGAATTGAGTTCAGTGAAGA+TGG | - | chr5_2:25949446-25949465 | None:intergenic | 35.0% | |
| ATTCTACCCCAAGATTATCA+TGG | + | chr5_2:25949461-25949480 | Msa0765270:CDS | 35.0% | |
| TGCATACCATGATAATCTTG+GGG | - | chr5_2:25949470-25949489 | None:intergenic | 35.0% | |
| ! | ATAACATTTTGTGCAGACAC+CGG | - | chr5_2:25949676-25949695 | None:intergenic | 35.0% |
| ! | TTTTCATCAGGGATTGAACT+TGG | + | chr5_2:25949813-25949832 | Msa0765270:CDS | 35.0% |
| !!! | CTTGAGAAGAGTTTTGAACT+TGG | + | chr5_2:25949930-25949949 | Msa0765270:CDS | 35.0% |
| AACCTAGACAAGTTGCTATA+TGG | + | chr5_2:25950006-25950025 | Msa0765270:CDS | 35.0% | |
| AACCATATAGCAACTTGTCT+AGG | - | chr5_2:25950011-25950030 | None:intergenic | 35.0% | |
| TTCAAAATAGAAGGGCTAGA+TGG | + | chr5_2:25950030-25950049 | Msa0765270:CDS | 35.0% | |
| ! | AAACCTCAGCTTGAAGTTTT+TGG | - | chr5_2:25950145-25950164 | None:intergenic | 35.0% |
| TAGAGAATAGGTGAAAGGAA+AGG | - | chr5_2:25950624-25950643 | None:intergenic | 35.0% | |
| GATGTTAGAGAATAGGTGAA+AGG | - | chr5_2:25950629-25950648 | None:intergenic | 35.0% | |
| !! | TTCAGGTTGATTGATTCTGT+TGG | - | chr5_2:25950999-25951018 | None:intergenic | 35.0% |
| AACCTGAACAAAGAAACAGA+AGG | + | chr5_2:25951011-25951030 | Msa0765270:CDS | 35.0% | |
| ! | ATCCTTCTGTTTCTTTGTTC+AGG | - | chr5_2:25951016-25951035 | None:intergenic | 35.0% |
| GAACAGTTCAGATATCAAGT+TGG | + | chr5_2:25951055-25951074 | Msa0765270:CDS | 35.0% | |
| ! | AGCTTTTCCAAACTTCTTCA+AGG | + | chr5_2:25951183-25951202 | Msa0765270:CDS | 35.0% |
| TTCAAGGCCAGAAATTCAAA+TGG | + | chr5_2:25951199-25951218 | Msa0765270:CDS | 35.0% | |
| ! | AAGCAACATGTTTTGTGGTA+TGG | + | chr5_2:25951238-25951257 | Msa0765270:CDS | 35.0% |
| TGAGGGATGCTTGAATCTAT+AGG | - | chr5_2:25949018-25949037 | None:intergenic | 40.0% | |
| !! | TAGCTGGTCTTGAAGATTTG+TGG | + | chr5_2:25949329-25949348 | Msa0765270:five_prime_UTR | 40.0% |
| ! | TCATGCATTGTTGCTTGTCT+AGG | - | chr5_2:25949359-25949378 | None:intergenic | 40.0% |
| ACAAGCAACAATGCATGAGA+TGG | + | chr5_2:25949361-25949380 | Msa0765270:exon | 40.0% | |
| ! | TGATGATCATCATGGTGATG+AGG | - | chr5_2:25949419-25949438 | None:intergenic | 40.0% |
| TGCACAAGACACATAGAGAT+TGG | - | chr5_2:25949714-25949733 | None:intergenic | 40.0% | |
| GATCTCTTCCCTAGAAATGA+TGG | - | chr5_2:25949786-25949805 | None:intergenic | 40.0% | |
| GAAGAAGAGGAGGCTTAATA+TGG | + | chr5_2:25949893-25949912 | Msa0765270:CDS | 40.0% | |
| TAGATGGAAGACAAAGCAGT+TGG | + | chr5_2:25950046-25950065 | Msa0765270:CDS | 40.0% | |
| GAACCAAAAACTTCAAGCTG+AGG | + | chr5_2:25950139-25950158 | Msa0765270:CDS | 40.0% | |
| !! | TTGGTTCGGTTCTAATTTCG+TGG | - | chr5_2:25950925-25950944 | None:intergenic | 40.0% |
| GTATGTTGGTGTGTAGAAAG+AGG | - | chr5_2:25951110-25951129 | None:intergenic | 40.0% | |
| !! | AGGTTCTGCTTGTTGTATGT+TGG | - | chr5_2:25951124-25951143 | None:intergenic | 40.0% |
| !! | TTTCTGGCCTTGAAGAAGTT+TGG | - | chr5_2:25951193-25951212 | None:intergenic | 40.0% |
| ! | TGGATGATCAAGCTGGATTT+TGG | + | chr5_2:25951258-25951277 | Msa0765270:CDS | 40.0% |
| AAATGTTGTTGCTCCAACCA+TGG | - | chr5_2:25951284-25951303 | None:intergenic | 40.0% | |
| GAATCCACTACACCTACTTA+TGG | + | chr5_2:25951490-25951509 | Msa0765270:three_prime_UTR | 40.0% | |
| TGACGTTTAGTGTAAGGGGA+TGG | - | chr5_2:25948829-25948848 | None:intergenic | 45.0% | |
| GTCTCTATTCGTCTTGAGCA+TGG | - | chr5_2:25949629-25949648 | None:intergenic | 45.0% | |
| TAGGGGGACCATCATTTCTA+GGG | + | chr5_2:25949775-25949794 | Msa0765270:intron | 45.0% | |
| !! | TCAGATGATGGATCACAAGC+TGG | + | chr5_2:25949867-25949886 | Msa0765270:CDS | 45.0% |
| GTAATAAGCTTGAGCCTGAG+AGG | + | chr5_2:25949952-25949971 | Msa0765270:CDS | 45.0% | |
| GAAAGAGGACTATCACTTGC+TGG | - | chr5_2:25951095-25951114 | None:intergenic | 45.0% | |
| TGTGGTATGGATGATCAAGC+TGG | + | chr5_2:25951251-25951270 | Msa0765270:CDS | 45.0% | |
| !! | ATCAAGCTGGATTTTGGCCA+TGG | + | chr5_2:25951264-25951283 | Msa0765270:CDS | 45.0% |
| TGCACCATAAGTAGGTGTAG+TGG | - | chr5_2:25951497-25951516 | None:intergenic | 45.0% | |
| ACGACGATTGCACCATAAGT+AGG | - | chr5_2:25951505-25951524 | None:intergenic | 45.0% | |
| ! | TAACGGATGTCACTGCTCAA+TGG | - | chr5_2:25951594-25951613 | None:intergenic | 45.0% |
| !!! | TTATTATTTTTTATAACAAT+GGG | + | chr5_2:25950459-25950478 | Msa0765270:intron | 5.0% |
| !! | AATTAAAATTATCTAATTAT+TGG | - | chr5_2:25950944-25950963 | None:intergenic | 5.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr5_2:25949042-25949061 | None:intergenic | 50.0% | |
| GTAGGGGGACCATCATTTCT+AGG | + | chr5_2:25949774-25949793 | Msa0765270:intron | 50.0% | |
| CACAAGCTGGAGAGAAGAAG+AGG | + | chr5_2:25949880-25949899 | Msa0765270:CDS | 50.0% | |
| AAGCTGGAGAGAAGAAGAGG+AGG | + | chr5_2:25949883-25949902 | Msa0765270:CDS | 50.0% | |
| ! | GCAAGCTGCATTTTCCTCTC+AGG | - | chr5_2:25949969-25949988 | None:intergenic | 50.0% |
| CCTAGCAGAAGGTGGAAAGA+AGG | - | chr5_2:25951144-25951163 | None:intergenic | 50.0% | |
| CCTTCTTTCCACCTTCTGCT+AGG | + | chr5_2:25951141-25951160 | Msa0765270:CDS | 50.0% | |
| AGCTGAGCAATTCCACCTGA+AGG | - | chr5_2:25951167-25951186 | None:intergenic | 50.0% | |
| !! | AGCTGGATTTTGGCCATGGT+TGG | + | chr5_2:25951268-25951287 | Msa0765270:CDS | 50.0% |
| GAGAGAGAGAGAGGTGGTGA+GGG | - | chr5_2:25949035-25949054 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGAGGTGGTG+AGG | - | chr5_2:25949036-25949055 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGAGG+TGG | - | chr5_2:25949041-25949060 | None:intergenic | 55.0% | |
| TCGTGGCAAGAAACTGCGCA+TGG | - | chr5_2:25950908-25950927 | None:intergenic | 55.0% | |
| CCTGAAGGCCTAGCAGAAGG+TGG | - | chr5_2:25951152-25951171 | None:intergenic | 60.0% | |
| CCACCTTCTGCTAGGCCTTC+AGG | + | chr5_2:25951149-25951168 | Msa0765270:CDS | 60.0% | |
| CCACCTGAAGGCCTAGCAGA+AGG | - | chr5_2:25951155-25951174 | None:intergenic | 60.0% | |
| CCTTCTGCTAGGCCTTCAGG+TGG | + | chr5_2:25951152-25951171 | Msa0765270:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 25948793 | 25951664 | 25948793 | ID=Msa0765270;Name=Msa0765270 |
| chr5_2 | mRNA | 25948793 | 25951664 | 25948793 | ID=Msa0765270-mRNA-1;Parent=Msa0765270;Name=Msa0765270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=446|1|1|1|0.66|0.5|4|354|277 |
| chr5_2 | exon | 25948793 | 25949195 | 25948793 | ID=Msa0765270-mRNA-1:exon:10388;Parent=Msa0765270-mRNA-1 |
| chr5_2 | exon | 25949328 | 25949482 | 25949328 | ID=Msa0765270-mRNA-1:exon:10389;Parent=Msa0765270-mRNA-1 |
| chr5_2 | exon | 25949778 | 25950160 | 25949778 | ID=Msa0765270-mRNA-1:exon:10390;Parent=Msa0765270-mRNA-1 |
| chr5_2 | exon | 25950972 | 25951664 | 25950972 | ID=Msa0765270-mRNA-1:exon:10391;Parent=Msa0765270-mRNA-1 |
| chr5_2 | five_prime_UTR | 25948793 | 25949195 | 25948793 | ID=Msa0765270-mRNA-1:five_prime_utr;Parent=Msa0765270-mRNA-1 |
| chr5_2 | five_prime_UTR | 25949328 | 25949370 | 25949328 | ID=Msa0765270-mRNA-1:five_prime_utr;Parent=Msa0765270-mRNA-1 |
| chr5_2 | CDS | 25949371 | 25949482 | 25949371 | ID=Msa0765270-mRNA-1:cds;Parent=Msa0765270-mRNA-1 |
| chr5_2 | CDS | 25949778 | 25950160 | 25949778 | ID=Msa0765270-mRNA-1:cds;Parent=Msa0765270-mRNA-1 |
| chr5_2 | CDS | 25950972 | 25951310 | 25950972 | ID=Msa0765270-mRNA-1:cds;Parent=Msa0765270-mRNA-1 |
| chr5_2 | three_prime_UTR | 25951311 | 25951664 | 25951311 | ID=Msa0765270-mRNA-1:three_prime_utr;Parent=Msa0765270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
