Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725000 | XP_003613642.1 | 96.820 | 283 | 3 | 1 | 1 | 277 | 1 | 283 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725000 | sp|Q8LC03|ATB13_ARATH | 63.322 | 289 | 90 | 6 | 4 | 277 | 7 | 294 | 8.37e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725000 | G7KB59 | 96.820 | 283 | 3 | 1 | 1 | 277 | 1 | 283 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0725000 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0725000 | 0.816684 | 4.871816e-52 | -8.615850e-47 |
| Msa0003720 | Msa0725000 | 0.815720 | 7.998820e-52 | -8.615850e-47 |
| Msa0027820 | Msa0725000 | 0.832283 | 1.032551e-55 | -8.615850e-47 |
| Msa0035120 | Msa0725000 | 0.820526 | 6.546049e-53 | -8.615850e-47 |
| Msa0036830 | Msa0725000 | 0.803652 | 3.147016e-49 | -8.615850e-47 |
| Msa0051020 | Msa0725000 | 0.817787 | 2.751328e-52 | -8.615850e-47 |
| Msa0061340 | Msa0725000 | 0.810609 | 1.058585e-50 | -8.615850e-47 |
| Msa0063890 | Msa0725000 | 0.835198 | 1.929852e-56 | -8.615850e-47 |
| Msa0072720 | Msa0725000 | 0.813171 | 2.929756e-51 | -8.615850e-47 |
| Msa0081050 | Msa0725000 | 0.800850 | 1.187793e-48 | -8.615850e-47 |
| Msa0081520 | Msa0725000 | 0.821205 | 4.569209e-53 | -8.615850e-47 |
| Msa0092790 | Msa0725000 | 0.806512 | 7.934880e-50 | -8.615850e-47 |
| Msa0093850 | Msa0725000 | 0.820128 | 8.077663e-53 | -8.615850e-47 |
| Msa0101270 | Msa0725000 | 0.810030 | 1.411603e-50 | -8.615850e-47 |
| Msa0101440 | Msa0725000 | 0.832565 | 8.790561e-56 | -8.615850e-47 |
| Msa0108410 | Msa0725000 | 0.821590 | 3.723270e-53 | -8.615850e-47 |
| Msa0625630 | Msa0725000 | 0.804355 | 2.247962e-49 | -8.615850e-47 |
| Msa0626450 | Msa0725000 | 0.840767 | 7.131466e-58 | -8.615850e-47 |
| Msa0626490 | Msa0725000 | 0.837817 | 4.154723e-57 | -8.615850e-47 |
| Msa0637560 | Msa0725000 | 0.803475 | 3.424765e-49 | -8.615850e-47 |
| Msa0637580 | Msa0725000 | 0.801134 | 1.038930e-48 | -8.615850e-47 |
| Msa0638480 | Msa0725000 | 0.823399 | 1.414658e-53 | -8.615850e-47 |
| Msa0663300 | Msa0725000 | 0.807104 | 5.950496e-50 | -8.615850e-47 |
| Msa0664060 | Msa0725000 | 0.802154 | 6.419844e-49 | -8.615850e-47 |
| Msa0664600 | Msa0725000 | 0.840264 | 9.653162e-58 | -8.615850e-47 |
| Msa0693330 | Msa0725000 | 0.830562 | 2.738835e-55 | -8.615850e-47 |
| Msa0695270 | Msa0725000 | 0.801852 | 7.404379e-49 | -8.615850e-47 |
| Msa0707250 | Msa0725000 | 0.829076 | 6.303007e-55 | -8.615850e-47 |
| Msa0710800 | Msa0725000 | 0.823095 | 1.665294e-53 | -8.615850e-47 |
| Msa0720690 | Msa0725000 | 0.806555 | 7.771508e-50 | -8.615850e-47 |
| Msa0725000 | Msa0729100 | 0.842154 | 3.075330e-58 | -8.615850e-47 |
| Msa0725000 | Msa0738040 | 0.807432 | 5.069926e-50 | -8.615850e-47 |
| Msa0725000 | Msa0765270 | 0.977647 | 3.354285e-144 | -8.615850e-47 |
| Msa0725000 | Msa0766930 | 0.822563 | 2.215841e-53 | -8.615850e-47 |
| Msa0725000 | Msa0769180 | 0.807526 | 4.842991e-50 | -8.615850e-47 |
| Msa0725000 | Msa0788770 | 0.806608 | 7.575553e-50 | -8.615850e-47 |
| Msa0725000 | Msa0789100 | 0.809609 | 1.738459e-50 | -8.615850e-47 |
| Msa0725000 | Msa0805330 | 0.810042 | 1.402806e-50 | -8.615850e-47 |
| Msa0725000 | Msa0807280 | 0.856219 | 3.728785e-62 | -8.615850e-47 |
| Msa0725000 | Msa0807820 | 0.857581 | 1.480226e-62 | -8.615850e-47 |
| Msa0725000 | Msa0833530 | 0.807165 | 5.776215e-50 | -8.615850e-47 |
| Msa0725000 | Msa0845110 | 0.998053 | 4.910551e-255 | -8.615850e-47 |
| Msa0725000 | Msa0856050 | 0.821228 | 4.514635e-53 | -8.615850e-47 |
| Msa0725000 | Msa0861510 | 0.812948 | 3.278842e-51 | -8.615850e-47 |
| Msa0725000 | Msa0861600 | 0.813657 | 2.290800e-51 | -8.615850e-47 |
| Msa0725000 | Msa0866290 | 0.831952 | 1.246587e-55 | -8.615850e-47 |
| Msa0725000 | Msa0869780 | 0.811463 | 6.913669e-51 | -8.615850e-47 |
| Msa0725000 | Msa0873220 | 0.833049 | 6.666423e-56 | -8.615850e-47 |
| Msa0725000 | Msa0875290 | 0.806351 | 8.579825e-50 | -8.615850e-47 |
| Msa0725000 | Msa0938480 | 0.830645 | 2.614003e-55 | -8.615850e-47 |
| Msa0725000 | Msa0943440 | 0.812084 | 5.065644e-51 | -8.615850e-47 |
| Msa0725000 | Msa0967380 | 0.809493 | 1.841651e-50 | -8.615850e-47 |
| Msa0725000 | Msa0967870 | 0.835970 | 1.230513e-56 | -8.615850e-47 |
| Msa0725000 | Msa0975640 | 0.801114 | 1.048885e-48 | -8.615850e-47 |
| Msa0725000 | Msa0980140 | 0.841188 | 5.530408e-58 | -8.615850e-47 |
| Msa0725000 | Msa1020510 | 0.815047 | 1.129069e-51 | -8.615850e-47 |
| Msa0725000 | Msa1023500 | 0.812831 | 3.478349e-51 | -8.615850e-47 |
| Msa0725000 | Msa1029070 | 0.826305 | 2.918823e-54 | -8.615850e-47 |
| Msa0725000 | Msa1029250 | 0.801949 | 7.072965e-49 | -8.615850e-47 |
| Msa0725000 | Msa1031930 | 0.805509 | 1.289712e-49 | -8.615850e-47 |
| Msa0725000 | Msa1034500 | 0.824327 | 8.570826e-54 | -8.615850e-47 |
| Msa0725000 | Msa1043370 | 0.818605 | 1.796840e-52 | -8.615850e-47 |
| Msa0725000 | Msa1051830 | 0.805745 | 1.151076e-49 | -8.615850e-47 |
| Msa0725000 | Msa1059960 | 0.827865 | 1.235434e-54 | -8.615850e-47 |
| Msa0725000 | Msa1079230 | 0.827646 | 1.394465e-54 | -8.615850e-47 |
| Msa0725000 | Msa1079860 | 0.800319 | 1.523627e-48 | -8.615850e-47 |
| Msa0725000 | Msa1087650 | 0.819435 | 1.162972e-52 | -8.615850e-47 |
| Msa0725000 | Msa1089450 | 0.829470 | 5.057570e-55 | -8.615850e-47 |
| Msa0725000 | Msa1092010 | 0.805667 | 1.194958e-49 | -8.615850e-47 |
| Msa0725000 | Msa1095650 | 0.805258 | 1.455934e-49 | -8.615850e-47 |
| Msa0725000 | Msa1096960 | 0.807597 | 4.677814e-50 | -8.615850e-47 |
| Msa0725000 | Msa1105160 | 0.826321 | 2.892740e-54 | -8.615850e-47 |
| Msa0725000 | Msa1111130 | 0.801576 | 8.434662e-49 | -8.615850e-47 |
| Msa0725000 | Msa1113340 | 0.832995 | 6.876435e-56 | -8.615850e-47 |
| Msa0725000 | Msa1124110 | 0.815318 | 9.831111e-52 | -8.615850e-47 |
| Msa0725000 | Msa1140220 | 0.807987 | 3.864165e-50 | -8.615850e-47 |
| Msa0725000 | Msa1151910 | 0.810867 | 9.308575e-51 | -8.615850e-47 |
| Msa0725000 | Msa1156160 | 0.822117 | 2.812345e-53 | -8.615850e-47 |
| Msa0725000 | Msa1162770 | 0.803400 | 3.549711e-49 | -8.615850e-47 |
| Msa0725000 | Msa1168950 | 0.809102 | 2.233147e-50 | -8.615850e-47 |
| Msa0725000 | Msa1169040 | 0.804658 | 1.943587e-49 | -8.615850e-47 |
| Msa0725000 | Msa1183120 | 0.845552 | 3.781187e-59 | -8.615850e-47 |
| Msa0725000 | Msa1189070 | 0.804301 | 2.307283e-49 | -8.615850e-47 |
| Msa0725000 | Msa1192090 | 0.836366 | 9.758959e-57 | -8.615850e-47 |
| Msa0725000 | Msa1205280 | 0.803931 | 2.754553e-49 | -8.615850e-47 |
| Msa0725000 | Msa1205790 | 0.801614 | 8.285755e-49 | -8.615850e-47 |
| Msa0725000 | Msa1205830 | 0.802093 | 6.607642e-49 | -8.615850e-47 |
| Msa0725000 | Msa1208160 | 0.801488 | 8.792243e-49 | -8.615850e-47 |
| Msa0725000 | Msa1213800 | 0.827438 | 1.564423e-54 | -8.615850e-47 |
| Msa0725000 | Msa1225700 | 0.812161 | 4.873363e-51 | -8.615850e-47 |
| Msa0725000 | Msa1228200 | 0.817344 | 3.463119e-52 | -8.615850e-47 |
| Msa0725000 | Msa1229500 | 0.857152 | 1.982799e-62 | -8.615850e-47 |
| Msa0725000 | Msa1271990 | 0.850465 | 1.669201e-60 | -8.615850e-47 |
| Msa0725000 | Msa1276660 | 0.801948 | 7.076511e-49 | -8.615850e-47 |
| Msa0725000 | Msa1297230 | 0.811131 | 8.160320e-51 | -8.615850e-47 |
| Msa0725000 | Msa1328640 | 0.800707 | 1.270054e-48 | -8.615850e-47 |
| Msa0725000 | Msa1330420 | 0.808891 | 2.478263e-50 | -8.615850e-47 |
| Msa0725000 | Msa1333480 | 0.801702 | 7.949079e-49 | -8.615850e-47 |
| Msa0725000 | Msa1348090 | 0.821684 | 3.543082e-53 | -8.615850e-47 |
| Msa0725000 | Msa1355450 | 0.831184 | 1.927561e-55 | -8.615850e-47 |
| Msa0725000 | Msa1369150 | 0.808872 | 2.501234e-50 | -8.615850e-47 |
| Msa0725000 | Msa1371520 | 0.849393 | 3.328585e-60 | -8.615850e-47 |
| Msa0725000 | Msa1374060 | 0.823442 | 1.382098e-53 | -8.615850e-47 |
| Msa0725000 | Msa1382560 | 0.811239 | 7.734377e-51 | -8.615850e-47 |
| Msa0725000 | Msa1385890 | 0.825953 | 3.538692e-54 | -8.615850e-47 |
| Msa0725000 | Msa1387870 | 0.824993 | 5.971088e-54 | -8.615850e-47 |
| Msa0725000 | Msa1393570 | 0.800493 | 1.404361e-48 | -8.615850e-47 |
| Msa0725000 | Msa1418240 | 0.828637 | 8.048056e-55 | -8.615850e-47 |
| Msa0725000 | Msa1419370 | 0.836556 | 8.729712e-57 | -8.615850e-47 |
| Msa0725000 | Msa1423350 | 0.819120 | 1.372088e-52 | -8.615850e-47 |
| Msa0725000 | Msa1425880 | 0.836330 | 9.969953e-57 | -8.615850e-47 |
| Msa0725000 | Msa1432500 | 0.824851 | 6.451186e-54 | -8.615850e-47 |
| Msa0725000 | Msa1437940 | 0.802064 | 6.697699e-49 | -8.615850e-47 |
| Msa0725000 | Msa1440310 | 0.812425 | 4.266688e-51 | -8.615850e-47 |
| Msa0725000 | Msa1440960 | 0.844296 | 8.255192e-59 | -8.615850e-47 |
| Msa0725000 | Msa1444510 | 0.807203 | 5.667846e-50 | -8.615850e-47 |
| Msa0725000 | Msa1446810 | 0.800892 | 1.164203e-48 | -8.615850e-47 |
| Msa0124060 | Msa0725000 | 0.813017 | 3.166780e-51 | -8.615850e-47 |
| Msa0131900 | Msa0725000 | 0.809895 | 1.508870e-50 | -8.615850e-47 |
| Msa0136650 | Msa0725000 | 0.812351 | 4.429164e-51 | -8.615850e-47 |
| Msa0138360 | Msa0725000 | 0.843501 | 1.347823e-58 | -8.615850e-47 |
| Msa0144360 | Msa0725000 | 0.837594 | 4.739810e-57 | -8.615850e-47 |
| Msa0145580 | Msa0725000 | 0.801239 | 9.890541e-49 | -8.615850e-47 |
| Msa0146280 | Msa0725000 | 0.819499 | 1.124829e-52 | -8.615850e-47 |
| Msa0147980 | Msa0725000 | 0.818414 | 1.984819e-52 | -8.615850e-47 |
| Msa0152400 | Msa0725000 | 0.817801 | 2.731668e-52 | -8.615850e-47 |
| Msa0168500 | Msa0725000 | 0.818519 | 1.878571e-52 | -8.615850e-47 |
| Msa0173890 | Msa0725000 | 0.808187 | 3.503274e-50 | -8.615850e-47 |
| Msa0186010 | Msa0725000 | 0.815945 | 7.128590e-52 | -8.615850e-47 |
| Msa0188350 | Msa0725000 | 0.805872 | 1.082294e-49 | -8.615850e-47 |
| Msa0199520 | Msa0725000 | 0.803193 | 3.917940e-49 | -8.615850e-47 |
| Msa0212990 | Msa0725000 | 0.812757 | 3.611204e-51 | -8.615850e-47 |
| Msa0214550 | Msa0725000 | 0.802696 | 4.964188e-49 | -8.615850e-47 |
| Msa0221000 | Msa0725000 | 0.823256 | 1.527376e-53 | -8.615850e-47 |
| Msa0225100 | Msa0725000 | 0.823247 | 1.534815e-53 | -8.615850e-47 |
| Msa0225680 | Msa0725000 | 0.822855 | 1.894777e-53 | -8.615850e-47 |
| Msa0231380 | Msa0725000 | 0.800803 | 1.214194e-48 | -8.615850e-47 |
| Msa0233730 | Msa0725000 | 0.808074 | 3.702544e-50 | -8.615850e-47 |
| Msa0365100 | Msa0725000 | 0.826700 | 2.349255e-54 | -8.615850e-47 |
| Msa0367870 | Msa0725000 | 0.833638 | 4.754600e-56 | -8.615850e-47 |
| Msa0376630 | Msa0725000 | 0.815628 | 8.385620e-52 | -8.615850e-47 |
| Msa0378720 | Msa0725000 | 0.838519 | 2.740095e-57 | -8.615850e-47 |
| Msa0403640 | Msa0725000 | 0.803017 | 4.261015e-49 | -8.615850e-47 |
| Msa0406770 | Msa0725000 | 0.828986 | 6.626410e-55 | -8.615850e-47 |
| Msa0410500 | Msa0725000 | 0.811599 | 6.458775e-51 | -8.615850e-47 |
| Msa0422850 | Msa0725000 | 0.804260 | 2.352446e-49 | -8.615850e-47 |
| Msa0422930 | Msa0725000 | 0.808370 | 3.202502e-50 | -8.615850e-47 |
| Msa0427100 | Msa0725000 | 0.827301 | 1.686975e-54 | -8.615850e-47 |
| Msa0427120 | Msa0725000 | 0.827082 | 1.904020e-54 | -8.615850e-47 |
| Msa0428370 | Msa0725000 | 0.803407 | 3.538151e-49 | -8.615850e-47 |
| Msa0428920 | Msa0725000 | 0.807447 | 5.033255e-50 | -8.615850e-47 |
| Msa0430260 | Msa0725000 | 0.817001 | 4.135282e-52 | -8.615850e-47 |
| Msa0450400 | Msa0725000 | -0.820223 | 7.685098e-53 | -8.615850e-47 |
| Msa0452710 | Msa0725000 | 0.806658 | 7.391041e-50 | -8.615850e-47 |
| Msa0460590 | Msa0725000 | 0.812207 | 4.761443e-51 | -8.615850e-47 |
| Msa0467430 | Msa0725000 | 0.811644 | 6.314923e-51 | -8.615850e-47 |
| Msa0473500 | Msa0725000 | 0.811851 | 5.693119e-51 | -8.615850e-47 |
| Msa0474730 | Msa0725000 | 0.843276 | 1.547481e-58 | -8.615850e-47 |
| Msa0479170 | Msa0725000 | 0.831121 | 1.997785e-55 | -8.615850e-47 |
| Msa0479200 | Msa0725000 | 0.852078 | 5.844095e-61 | -8.615850e-47 |
| Msa0240900 | Msa0725000 | 0.822704 | 2.054682e-53 | -8.615850e-47 |
| Msa0244640 | Msa0725000 | 0.815036 | 1.135583e-51 | -8.615850e-47 |
| Msa0247940 | Msa0725000 | 0.808781 | 2.616825e-50 | -8.615850e-47 |
| Msa0251710 | Msa0725000 | 0.810551 | 1.089543e-50 | -8.615850e-47 |
| Msa0253290 | Msa0725000 | 0.833102 | 6.467419e-56 | -8.615850e-47 |
| Msa0266180 | Msa0725000 | 0.819913 | 9.049425e-53 | -8.615850e-47 |
| Msa0270660 | Msa0725000 | 0.800164 | 1.638329e-48 | -8.615850e-47 |
| Msa0281430 | Msa0725000 | 0.800319 | 1.523627e-48 | -8.615850e-47 |
| Msa0281530 | Msa0725000 | 0.808838 | 2.543476e-50 | -8.615850e-47 |
| Msa0287740 | Msa0725000 | 0.834511 | 2.873313e-56 | -8.615850e-47 |
| Msa0288080 | Msa0725000 | 0.822660 | 2.103783e-53 | -8.615850e-47 |
| Msa0292120 | Msa0725000 | 0.816219 | 6.191009e-52 | -8.615850e-47 |
| Msa0292400 | Msa0725000 | 0.810867 | 9.312048e-51 | -8.615850e-47 |
| Msa0296250 | Msa0725000 | 0.813317 | 2.721170e-51 | -8.615850e-47 |
| Msa0298410 | Msa0725000 | 0.801371 | 9.290889e-49 | -8.615850e-47 |
| Msa0300270 | Msa0725000 | 0.832487 | 9.192503e-56 | -8.615850e-47 |
| Msa0300320 | Msa0725000 | 0.824827 | 6.535895e-54 | -8.615850e-47 |
| Msa0317970 | Msa0725000 | 0.833743 | 4.475623e-56 | -8.615850e-47 |
| Msa0318700 | Msa0725000 | 0.822953 | 1.797500e-53 | -8.615850e-47 |
| Msa0320590 | Msa0725000 | 0.811490 | 6.822809e-51 | -8.615850e-47 |
| Msa0321620 | Msa0725000 | 0.824177 | 9.294324e-54 | -8.615850e-47 |
| Msa0330340 | Msa0725000 | 0.819519 | 1.113288e-52 | -8.615850e-47 |
| Msa0337700 | Msa0725000 | 0.828259 | 9.931678e-55 | -8.615850e-47 |
| Msa0341690 | Msa0725000 | 0.814627 | 1.399310e-51 | -8.615850e-47 |
| Msa0357990 | Msa0725000 | 0.816577 | 5.147106e-52 | -8.615850e-47 |
| Msa0360210 | Msa0725000 | 0.828987 | 6.621757e-55 | -8.615850e-47 |
| Msa0485240 | Msa0725000 | 0.824710 | 6.964637e-54 | -8.615850e-47 |
| Msa0500380 | Msa0725000 | 0.803217 | 3.872676e-49 | -8.615850e-47 |
| Msa0518030 | Msa0725000 | 0.808413 | 3.135851e-50 | -8.615850e-47 |
| Msa0527190 | Msa0725000 | 0.848334 | 6.550189e-60 | -8.615850e-47 |
| Msa0527860 | Msa0725000 | 0.817032 | 4.069696e-52 | -8.615850e-47 |
| Msa0572840 | Msa0725000 | 0.839786 | 1.286853e-57 | -8.615850e-47 |
| Msa0574390 | Msa0725000 | 0.802229 | 6.195317e-49 | -8.615850e-47 |
| Msa0582450 | Msa0725000 | 0.801653 | 8.135195e-49 | -8.615850e-47 |
| Msa0585560 | Msa0725000 | 0.800707 | 1.270054e-48 | -8.615850e-47 |
| Msa0586190 | Msa0725000 | 0.802728 | 4.888427e-49 | -8.615850e-47 |
| Msa0597790 | Msa0725000 | 0.823635 | 1.245619e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725000 | MtrunA17_Chr5g0416391 | 96.820 | 283 | 3 | 1 | 1 | 277 | 1 | 283 | 0.0 | 563 |
| Msa0725000 | MtrunA17_Chr8g0362151 | 81.119 | 286 | 38 | 7 | 4 | 277 | 1 | 282 | 2.73e-149 | 419 |
| Msa0725000 | MtrunA17_Chr6g0453021 | 52.218 | 293 | 85 | 11 | 11 | 275 | 9 | 274 | 1.15e-81 | 247 |
| Msa0725000 | MtrunA17_Chr7g0217111 | 51.087 | 276 | 121 | 8 | 4 | 270 | 1 | 271 | 5.09e-77 | 235 |
| Msa0725000 | MtrunA17_Chr8g0381741 | 44.886 | 176 | 88 | 3 | 65 | 238 | 40 | 208 | 4.64e-39 | 138 |
| Msa0725000 | MtrunA17_Chr6g0450991 | 64.000 | 100 | 36 | 0 | 73 | 172 | 63 | 162 | 6.18e-38 | 135 |
| Msa0725000 | MtrunA17_Chr5g0415941 | 51.634 | 153 | 67 | 3 | 23 | 172 | 34 | 182 | 1.53e-37 | 135 |
| Msa0725000 | MtrunA17_Chr3g0123691 | 57.500 | 120 | 48 | 1 | 64 | 180 | 47 | 166 | 1.74e-37 | 134 |
| Msa0725000 | MtrunA17_Chr3g0119291 | 54.225 | 142 | 54 | 2 | 62 | 192 | 44 | 185 | 2.08e-37 | 132 |
| Msa0725000 | MtrunA17_Chr4g0060031 | 54.688 | 128 | 54 | 1 | 45 | 172 | 67 | 190 | 8.52e-37 | 133 |
| Msa0725000 | MtrunA17_Chr8g0362751 | 50.641 | 156 | 65 | 2 | 28 | 172 | 30 | 184 | 1.42e-36 | 131 |
| Msa0725000 | MtrunA17_Chr7g0265521 | 50.926 | 108 | 46 | 1 | 65 | 172 | 51 | 151 | 1.40e-30 | 114 |
| Msa0725000 | MtrunA17_Chr1g0179581 | 54.167 | 96 | 41 | 2 | 62 | 156 | 14 | 107 | 7.45e-26 | 98.6 |
| Msa0725000 | MtrunA17_Chr3g0127511 | 53.846 | 91 | 42 | 0 | 79 | 169 | 40 | 130 | 8.97e-26 | 102 |
| Msa0725000 | MtrunA17_Chr8g0346251 | 41.322 | 121 | 71 | 0 | 51 | 171 | 15 | 135 | 2.32e-23 | 95.5 |
| Msa0725000 | MtrunA17_Chr4g0054421 | 47.573 | 103 | 52 | 1 | 62 | 164 | 114 | 214 | 6.52e-21 | 89.7 |
| Msa0725000 | MtrunA17_Chr4g0055851 | 45.545 | 101 | 54 | 1 | 65 | 164 | 107 | 207 | 5.15e-20 | 87.4 |
| Msa0725000 | MtrunA17_Chr5g0403701 | 48.889 | 90 | 46 | 0 | 77 | 166 | 53 | 142 | 3.01e-19 | 83.6 |
| Msa0725000 | MtrunA17_Chr5g0403691 | 47.872 | 94 | 49 | 0 | 77 | 170 | 53 | 146 | 3.51e-19 | 84.0 |
| Msa0725000 | MtrunA17_Chr7g0258831 | 45.283 | 106 | 54 | 1 | 69 | 174 | 152 | 253 | 7.11e-19 | 84.3 |
| Msa0725000 | MtrunA17_Chr5g0400781 | 45.000 | 100 | 55 | 0 | 69 | 168 | 115 | 214 | 8.33e-19 | 84.0 |
| Msa0725000 | MtrunA17_Chr2g0308611 | 40.833 | 120 | 70 | 1 | 45 | 164 | 169 | 287 | 1.07e-18 | 84.3 |
| Msa0725000 | MtrunA17_Chr1g0175651 | 46.875 | 96 | 51 | 0 | 69 | 164 | 146 | 241 | 1.15e-18 | 84.0 |
| Msa0725000 | MtrunA17_Chr5g0399491 | 40.323 | 124 | 74 | 0 | 41 | 164 | 100 | 223 | 1.32e-18 | 83.6 |
| Msa0725000 | MtrunA17_Chr8g0335131 | 48.913 | 92 | 47 | 0 | 77 | 168 | 146 | 237 | 1.73e-18 | 83.6 |
| Msa0725000 | MtrunA17_Chr1g0151971 | 38.889 | 144 | 81 | 2 | 27 | 164 | 75 | 217 | 3.67e-18 | 82.4 |
| Msa0725000 | MtrunA17_Chr4g0071411 | 44.706 | 85 | 47 | 0 | 80 | 164 | 91 | 175 | 2.73e-16 | 75.9 |
| Msa0725000 | MtrunA17_Chr4g0044091 | 46.591 | 88 | 47 | 0 | 77 | 164 | 65 | 152 | 9.60e-16 | 73.9 |
| Msa0725000 | MtrunA17_Chr3g0135331 | 43.617 | 94 | 53 | 0 | 55 | 148 | 123 | 216 | 1.18e-15 | 75.5 |
| Msa0725000 | MtrunA17_Chr2g0299031 | 38.182 | 110 | 65 | 1 | 58 | 164 | 60 | 169 | 9.43e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725000 | AT1G69780.1 | 63.322 | 289 | 90 | 6 | 4 | 277 | 7 | 294 | 8.51e-118 | 340 |
| Msa0725000 | AT1G26960.1 | 57.500 | 280 | 81 | 11 | 4 | 277 | 8 | 255 | 3.43e-94 | 278 |
| Msa0725000 | AT3G01220.1 | 49.635 | 274 | 117 | 8 | 3 | 270 | 15 | 273 | 2.52e-76 | 234 |
| Msa0725000 | AT5G15150.1 | 45.205 | 292 | 124 | 11 | 3 | 270 | 21 | 300 | 3.95e-66 | 209 |
| Msa0725000 | AT5G65310.2 | 50.602 | 166 | 75 | 3 | 65 | 223 | 39 | 204 | 1.76e-41 | 145 |
| Msa0725000 | AT5G65310.1 | 50.602 | 166 | 75 | 3 | 65 | 223 | 57 | 222 | 3.72e-41 | 144 |
| Msa0725000 | AT4G40060.1 | 61.947 | 113 | 41 | 1 | 76 | 186 | 58 | 170 | 1.41e-37 | 134 |
| Msa0725000 | AT2G22430.1 | 67.010 | 97 | 32 | 0 | 76 | 172 | 61 | 157 | 3.16e-37 | 134 |
| Msa0725000 | AT3G01470.1 | 63.000 | 100 | 37 | 0 | 73 | 172 | 64 | 163 | 1.89e-36 | 131 |
| Msa0725000 | AT1G27045.1 | 40.625 | 192 | 96 | 5 | 11 | 195 | 12 | 192 | 1.55e-29 | 112 |
| Msa0725000 | AT1G27045.5 | 45.517 | 145 | 72 | 2 | 58 | 195 | 5 | 149 | 1.09e-27 | 105 |
| Msa0725000 | AT1G27045.3 | 45.517 | 145 | 72 | 2 | 58 | 195 | 5 | 149 | 1.09e-27 | 105 |
| Msa0725000 | AT1G27045.4 | 43.312 | 157 | 77 | 4 | 11 | 166 | 12 | 157 | 1.62e-27 | 107 |
| Msa0725000 | AT1G27045.2 | 48.800 | 125 | 58 | 1 | 77 | 195 | 17 | 141 | 4.57e-27 | 103 |
| Msa0725000 | AT2G46680.1 | 52.688 | 93 | 44 | 0 | 78 | 170 | 33 | 125 | 2.52e-26 | 104 |
| Msa0725000 | AT2G46680.2 | 53.333 | 90 | 42 | 0 | 78 | 167 | 33 | 122 | 1.57e-25 | 102 |
| Msa0725000 | AT5G03790.1 | 38.356 | 146 | 78 | 1 | 19 | 164 | 31 | 164 | 3.62e-24 | 97.8 |
| Msa0725000 | AT3G61890.1 | 51.111 | 90 | 44 | 0 | 80 | 169 | 33 | 122 | 3.70e-24 | 97.8 |
| Msa0725000 | AT5G03790.2 | 40.000 | 130 | 66 | 1 | 19 | 148 | 31 | 148 | 4.84e-23 | 94.0 |
| Msa0725000 | AT2G18550.1 | 35.354 | 198 | 96 | 6 | 20 | 205 | 7 | 184 | 1.08e-22 | 93.6 |
| Msa0725000 | AT4G36740.2 | 48.544 | 103 | 46 | 1 | 68 | 170 | 47 | 142 | 1.54e-21 | 90.5 |
| Msa0725000 | AT4G36740.1 | 48.544 | 103 | 46 | 1 | 68 | 170 | 46 | 141 | 1.62e-21 | 90.5 |
| Msa0725000 | AT2G36610.1 | 41.379 | 116 | 58 | 2 | 59 | 166 | 55 | 168 | 4.08e-21 | 88.6 |
| Msa0725000 | AT5G66700.1 | 46.552 | 116 | 53 | 2 | 64 | 172 | 60 | 173 | 8.57e-21 | 88.6 |
| Msa0725000 | AT5G53980.1 | 45.545 | 101 | 55 | 0 | 72 | 172 | 6 | 106 | 2.23e-20 | 85.9 |
| Msa0725000 | AT3G60390.1 | 45.545 | 101 | 55 | 0 | 64 | 164 | 149 | 249 | 5.32e-19 | 85.5 |
| Msa0725000 | AT4G37790.1 | 45.000 | 100 | 55 | 0 | 65 | 164 | 114 | 213 | 2.50e-18 | 82.8 |
| Msa0725000 | AT5G47370.1 | 43.434 | 99 | 56 | 0 | 66 | 164 | 119 | 217 | 3.15e-18 | 82.8 |
| Msa0725000 | AT2G01430.1 | 44.554 | 101 | 56 | 0 | 64 | 164 | 126 | 226 | 1.21e-17 | 80.9 |
| Msa0725000 | AT5G06710.1 | 44.792 | 96 | 53 | 0 | 69 | 164 | 182 | 277 | 1.41e-17 | 81.6 |
| Msa0725000 | AT2G22800.1 | 44.792 | 96 | 53 | 0 | 69 | 164 | 105 | 200 | 3.45e-17 | 79.7 |
| Msa0725000 | AT4G17460.1 | 42.708 | 96 | 55 | 0 | 69 | 164 | 127 | 222 | 1.25e-16 | 78.2 |
| Msa0725000 | AT2G44910.1 | 46.591 | 88 | 47 | 0 | 77 | 164 | 163 | 250 | 2.84e-16 | 77.8 |
| Msa0725000 | AT1G70920.1 | 37.600 | 125 | 69 | 2 | 56 | 180 | 50 | 165 | 1.14e-14 | 71.6 |
| Msa0725000 | AT1G70920.2 | 37.600 | 125 | 69 | 2 | 56 | 180 | 20 | 135 | 2.24e-14 | 70.1 |
| Msa0725000 | AT4G16780.1 | 40.625 | 96 | 57 | 0 | 69 | 164 | 121 | 216 | 3.83e-14 | 71.2 |
| Msa0725000 | AT2G01430.2 | 51.515 | 66 | 32 | 0 | 64 | 129 | 126 | 191 | 9.98e-13 | 66.2 |
| Msa0725000 | AT5G06710.4 | 51.667 | 60 | 29 | 0 | 69 | 128 | 182 | 241 | 1.67e-11 | 63.5 |
Find 67 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTGACCATTTGAATTTC+TGG | 0.030649 | 5_1:+24286485 | None:intergenic |
| ATTTATCTCTTTAAAATTAA+TGG | 0.144739 | 5_1:+24286161 | None:intergenic |
| ATCCTTCTGTTTCTTTGTTC+AGG | 0.195256 | 5_1:+24286678 | None:intergenic |
| AACATTTCAATTGAATTAAA+AGG | 0.215413 | 5_1:-24286394 | Msa0725000:exon |
| CCACCTTCTGCTAGGCCTTC+AGG | 0.235321 | 5_1:-24286542 | Msa0725000:CDS |
| TGGATGATCAAGCTGGATTT+TGG | 0.257444 | 5_1:-24286433 | Msa0725000:CDS |
| TTTCTGGCCTTGAAGAAGTT+TGG | 0.289017 | 5_1:+24286501 | None:intergenic |
| TTTCGATTAAACGGTCTTTA+CGG | 0.293933 | 5_1:-24286131 | Msa0725000:three_prime_UTR |
| CTCCATCTTATTCGATTTGA+AGG | 0.313747 | 5_1:-24288563 | Msa0725000:five_prime_UTR |
| GAAGAAGAGGAGGCTTAATA+TGG | 0.330137 | 5_1:-24287797 | Msa0725000:CDS |
| AACCTAGACAAGTTGCTATA+TGG | 0.331625 | 5_1:-24287684 | Msa0725000:CDS |
| TATAGCTTACATACAATAAA+GGG | 0.333373 | 5_1:-24288737 | Msa0725000:five_prime_UTR |
| CTATATGGTTTCAAAATAGA+AGG | 0.336540 | 5_1:-24287669 | Msa0725000:CDS |
| TTTATATATGAATGAATAAA+GGG | 0.350520 | 5_1:-24286050 | Msa0725000:three_prime_UTR |
| GTATAGCTTACATACAATAA+AGG | 0.353034 | 5_1:-24288738 | Msa0725000:five_prime_UTR |
| TTGTTTAATGTGAAATCAAA+AGG | 0.361082 | 5_1:-24286336 | Msa0725000:three_prime_UTR |
| TTAAAATGACGTTTAGTGTA+AGG | 0.382650 | 5_1:+24288853 | None:intergenic |
| TATGCATACCATGATAATCT+TGG | 0.383501 | 5_1:+24288222 | None:intergenic |
| ATGCATACCATGATAATCTT+GGG | 0.394882 | 5_1:+24288223 | None:intergenic |
| TCATGCATTGTTGCTTGTCT+AGG | 0.398751 | 5_1:+24288335 | None:intergenic |
| GAATCCACTACACCTACTTA+TGG | 0.399350 | 5_1:-24286201 | Msa0725000:three_prime_UTR |
| TCATCTGATAAATCTTCTTC+AGG | 0.406192 | 5_1:+24287838 | None:intergenic |
| AGAATTGAGTTCAGTGAAGA+TGG | 0.417198 | 5_1:+24288248 | None:intergenic |
| TAGCTGGTCTTGAAGATTTG+TGG | 0.429766 | 5_1:-24288362 | Msa0725000:five_prime_UTR |
| GAAAGAGGACTATCACTTGC+TGG | 0.446270 | 5_1:+24286599 | None:intergenic |
| TTCAAAATAGAAGGGCTAGA+TGG | 0.455440 | 5_1:-24287660 | Msa0725000:CDS |
| CCTTCTTTCCACCTTCTGCT+AGG | 0.463390 | 5_1:-24286550 | Msa0725000:CDS |
| TTCAGGTTGATTGATTCTGT+TGG | 0.470903 | 5_1:+24286695 | None:intergenic |
| TTTGTAGCATGAAATTTGCT+TGG | 0.480428 | 5_1:+24288300 | None:intergenic |
| TGTTTAATGTGAAATCAAAA+GGG | 0.486923 | 5_1:-24286335 | Msa0725000:three_prime_UTR |
| GAAGAAGATTTATCAGATGA+TGG | 0.491350 | 5_1:-24287835 | Msa0725000:CDS |
| GTCCTTCAAATCGAATAAGA+TGG | 0.494060 | 5_1:+24288561 | None:intergenic |
| CCTAGCAGAAGGTGGAAAGA+AGG | 0.498274 | 5_1:+24286550 | None:intergenic |
| TTCAAGGCCAGAAATTCAAA+TGG | 0.500653 | 5_1:-24286492 | Msa0725000:CDS |
| GATCTCTTCCCTAGAAATGA+TGG | 0.506735 | 5_1:+24287907 | None:intergenic |
| TAAAATGACGTTTAGTGTAA+GGG | 0.507051 | 5_1:+24288854 | None:intergenic |
| TATATATGATATCAGATAGC+TGG | 0.509537 | 5_1:-24288378 | Msa0725000:intron |
| TCTTATGTAAATATTTGGAA+AGG | 0.514879 | 5_1:+24288609 | None:intergenic |
| ACGACGATTGCACCATAAGT+AGG | 0.527935 | 5_1:+24286189 | None:intergenic |
| TGACGTTTAGTGTAAGGGGA+TGG | 0.531984 | 5_1:+24288859 | None:intergenic |
| AGGTTCTGCTTGTTGTATGT+TGG | 0.535809 | 5_1:+24286570 | None:intergenic |
| TCAGATGATGGATCACAAGC+TGG | 0.546396 | 5_1:-24287823 | Msa0725000:CDS |
| ATTCTACCCCAAGATTATCA+TGG | 0.549074 | 5_1:-24288230 | Msa0725000:intron |
| TAACGGATGTCACTGCTCAA+TGG | 0.551390 | 5_1:+24286100 | None:intergenic |
| CACAAGCTGGAGAGAAGAAG+AGG | 0.557400 | 5_1:-24287810 | Msa0725000:CDS |
| AGCTGAGCAATTCCACCTGA+AGG | 0.558857 | 5_1:+24286527 | None:intergenic |
| TGTGGTATGGATGATCAAGC+TGG | 0.559995 | 5_1:-24286440 | Msa0725000:CDS |
| AAAATGACGTTTAGTGTAAG+GGG | 0.562850 | 5_1:+24288855 | None:intergenic |
| TGAGGGATGCTTGAATCTAT+AGG | 0.568000 | 5_1:+24288670 | None:intergenic |
| AACCATATAGCAACTTGTCT+AGG | 0.569003 | 5_1:+24287682 | None:intergenic |
| TATATGGTTTCAAAATAGAA+GGG | 0.590755 | 5_1:-24287668 | Msa0725000:CDS |
| AAATGTTGTTGCTCCAACCA+TGG | 0.592621 | 5_1:+24286410 | None:intergenic |
| CCACCTGAAGGCCTAGCAGA+AGG | 0.595631 | 5_1:+24286539 | None:intergenic |
| ACAAGCAACAATGCATGAGA+TGG | 0.601705 | 5_1:-24288330 | Msa0725000:exon |
| CCTGAAGGCCTAGCAGAAGG+TGG | 0.606372 | 5_1:+24286542 | None:intergenic |
| GTAATAAGCTTGAGCCTGAG+AGG | 0.611232 | 5_1:-24287738 | Msa0725000:CDS |
| AAGCTGGAGAGAAGAAGAGG+AGG | 0.613532 | 5_1:-24287807 | Msa0725000:CDS |
| TGCACCATAAGTAGGTGTAG+TGG | 0.615352 | 5_1:+24286197 | None:intergenic |
| GAACAGTTCAGATATCAAGT+TGG | 0.615882 | 5_1:-24286636 | Msa0725000:CDS |
| TAGATGGAAGACAAAGCAGT+TGG | 0.627956 | 5_1:-24287644 | Msa0725000:CDS |
| TGCATACCATGATAATCTTG+GGG | 0.632466 | 5_1:+24288224 | None:intergenic |
| CCTTCTGCTAGGCCTTCAGG+TGG | 0.640058 | 5_1:-24286539 | Msa0725000:CDS |
| ATAGCTTACATACAATAAAG+GGG | 0.647435 | 5_1:-24288736 | Msa0725000:five_prime_UTR |
| ATGGTTGATGATGATCATCA+TGG | 0.653135 | 5_1:+24288267 | None:intergenic |
| GTATGTTGGTGTGTAGAAAG+AGG | 0.664598 | 5_1:+24286584 | None:intergenic |
| TGATGATCATCATGGTGATG+AGG | 0.679615 | 5_1:+24288275 | None:intergenic |
| AACCTGAACAAAGAAACAGA+AGG | 0.692102 | 5_1:-24286680 | Msa0725000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGTGATATATA+TGG | - | chr5_1:24286233-24286252 | Msa0725000:three_prime_UTR | 10.0% |
| !! | TAAAGTACAATATATTTAAT+TGG | + | chr5_1:24287656-24287675 | None:intergenic | 10.0% |
| !!! | GTTATTATTTTTTATAACAA+TGG | - | chr5_1:24287708-24287727 | Msa0725000:CDS | 10.0% |
| !!! | ATTTATCTCTTTAAAATTAA+TGG | + | chr5_1:24288783-24288802 | None:intergenic | 10.0% |
| !!! | TTTTATATATGAATGAATAA+AGG | - | chr5_1:24288890-24288909 | Msa0725000:five_prime_UTR | 10.0% |
| !! | TTTATATATGAATGAATAAA+GGG | - | chr5_1:24288891-24288910 | Msa0725000:five_prime_UTR | 10.0% |
| !!! | TTTTATGTGCATAAATAAAA+AGG | + | chr5_1:24286151-24286170 | None:intergenic | 15.0% |
| !!! | CTTTTTCTTATGTAAATATT+TGG | + | chr5_1:24286340-24286359 | None:intergenic | 15.0% |
| !!! | TTCTTTGAAAATTAATATCT+TGG | - | chr5_1:24286472-24286491 | Msa0725000:CDS | 15.0% |
| !!! | ATTTCCAGTTTTTTTTTTAA+CGG | - | chr5_1:24286832-24286851 | Msa0725000:intron | 15.0% |
| !! | TTTGTAGAAATAATACTATT+TGG | - | chr5_1:24287786-24287805 | Msa0725000:CDS | 15.0% |
| !!! | ATCTTGATTAATTTACTTTT+AGG | + | chr5_1:24287932-24287951 | None:intergenic | 15.0% |
| !!! | AAATTATCTAATTATTGGTT+CGG | + | chr5_1:24288189-24288208 | None:intergenic | 15.0% |
| !!! | TTTTAATTTGTTACAGATAT+TGG | - | chr5_1:24288206-24288225 | Msa0725000:intron | 15.0% |
| !! | AACATTTCAATTGAATTAAA+AGG | - | chr5_1:24288547-24288566 | Msa0725000:five_prime_UTR | 15.0% |
| !!! | AATTTAAACTTTTCAAAACA+AGG | + | chr5_1:24288674-24288693 | None:intergenic | 15.0% |
| !! | TATAGCTTACATACAATAAA+GGG | - | chr5_1:24286204-24286223 | Msa0725000:three_prime_UTR | 20.0% |
| !! | TCTTATGTAAATATTTGGAA+AGG | + | chr5_1:24286335-24286354 | None:intergenic | 20.0% |
| !!! | TAAACTGAAACTCTTATTTT+TGG | - | chr5_1:24286994-24287013 | Msa0725000:intron | 20.0% |
| !!! | TTATTTTTGGTATCTAATGT+AGG | - | chr5_1:24287007-24287026 | Msa0725000:intron | 20.0% |
| !!! | TATTTTTGGTATCTAATGTA+GGG | - | chr5_1:24287008-24287027 | Msa0725000:intron | 20.0% |
| !! | TATATGGTTTCAAAATAGAA+GGG | - | chr5_1:24287273-24287292 | Msa0725000:intron | 20.0% |
| !!! | CTATTATATTACAGTTTTAG+AGG | - | chr5_1:24287446-24287465 | Msa0725000:intron | 20.0% |
| !!! | CGGTTAATTTTTTTTTGTAA+CGG | + | chr5_1:24287600-24287619 | None:intergenic | 20.0% |
| !!! | ATGAGTATGATTTTGAATTT+CGG | + | chr5_1:24287620-24287639 | None:intergenic | 20.0% |
| !!! | TTAATTTACTTTTAGGTGAT+TGG | + | chr5_1:24287925-24287944 | None:intergenic | 20.0% |
| !! | TGAAGTGAAAATAAAATCAT+TGG | + | chr5_1:24287955-24287974 | None:intergenic | 20.0% |
| !!! | TCTCTAGAAACTTTATAATA+TGG | + | chr5_1:24288035-24288054 | None:intergenic | 20.0% |
| !! | TTGTTTAATGTGAAATCAAA+AGG | - | chr5_1:24288605-24288624 | Msa0725000:five_prime_UTR | 20.0% |
| !! | TGTTTAATGTGAAATCAAAA+GGG | - | chr5_1:24288606-24288625 | Msa0725000:five_prime_UTR | 20.0% |
| !!! | ATGTTTTTCTTTCGATTAAA+CGG | - | chr5_1:24288801-24288820 | Msa0725000:five_prime_UTR | 20.0% |
| ! | TAAAATGACGTTTAGTGTAA+GGG | + | chr5_1:24286090-24286109 | None:intergenic | 25.0% |
| ! | TTAAAATGACGTTTAGTGTA+AGG | + | chr5_1:24286091-24286110 | None:intergenic | 25.0% |
| ! | AGCATTTGTAGAAAAAATTG+AGG | + | chr5_1:24286124-24286143 | None:intergenic | 25.0% |
| ! | GTATAGCTTACATACAATAA+AGG | - | chr5_1:24286203-24286222 | Msa0725000:three_prime_UTR | 25.0% |
| ! | ATAGCTTACATACAATAAAG+GGG | - | chr5_1:24286205-24286224 | Msa0725000:three_prime_UTR | 25.0% |
| ! | TATATATGATATCAGATAGC+TGG | - | chr5_1:24286563-24286582 | Msa0725000:CDS | 25.0% |
| ! | ATGCATATCATGATAATCTT+GGG | + | chr5_1:24286769-24286788 | None:intergenic | 25.0% |
| ! | TATGCATATCATGATAATCT+TGG | + | chr5_1:24286770-24286789 | None:intergenic | 25.0% |
| ! | TTTGCCGTTAAAAAAAAAAC+TGG | + | chr5_1:24286839-24286858 | None:intergenic | 25.0% |
| !!! | ATGTTTTTAATCTCTGATAC+TGG | + | chr5_1:24286902-24286921 | None:intergenic | 25.0% |
| !!! | ATTTTTGGTATCTAATGTAG+GGG | - | chr5_1:24287009-24287028 | Msa0725000:intron | 25.0% |
| ! | CTATATGGTTTCAAAATAGA+AGG | - | chr5_1:24287272-24287291 | Msa0725000:intron | 25.0% |
| !!! | TAAAGTTGATGTTAGAGAAT+AGG | + | chr5_1:24287886-24287905 | None:intergenic | 25.0% |
| ! | ATGACTTCTTTCTCTTAAAT+AGG | - | chr5_1:24287975-24287994 | Msa0725000:intron | 25.0% |
| !! | TAAGATGAGACATTTTTATG+TGG | + | chr5_1:24288012-24288031 | None:intergenic | 25.0% |
| !!! | ACATCCGTTATTTATTTTTG+CGG | - | chr5_1:24288854-24288873 | Msa0725000:five_prime_UTR | 25.0% |
| ! | AACTCCGCAAAAATAAATAA+CGG | + | chr5_1:24288861-24288880 | None:intergenic | 25.0% |
| AAAATGACGTTTAGTGTAAG+GGG | + | chr5_1:24286089-24286108 | None:intergenic | 30.0% | |
| AACAAGTGACAAAGACAATA+AGG | + | chr5_1:24286454-24286473 | None:intergenic | 30.0% | |
| ! | TTTGTAGCATGAAATTTGCT+TGG | + | chr5_1:24286644-24286663 | None:intergenic | 30.0% |
| ATGCATACCATGATAATCTT+GGG | + | chr5_1:24286721-24286740 | None:intergenic | 30.0% | |
| TATGCATACCATGATAATCT+TGG | + | chr5_1:24286722-24286741 | None:intergenic | 30.0% | |
| TGCATATCATGATAATCTTG+GGG | + | chr5_1:24286768-24286787 | None:intergenic | 30.0% | |
| !!! | ATGATGTTTTGATGCAACAT+AGG | + | chr5_1:24286803-24286822 | None:intergenic | 30.0% |
| ! | ATAACATTTTGTGCAGACAT+CGG | + | chr5_1:24286927-24286946 | None:intergenic | 30.0% |
| !! | TTTTTGGTATCTAATGTAGG+GGG | - | chr5_1:24287010-24287029 | Msa0725000:intron | 30.0% |
| !!! | AGATCTATGTCATTTTCATC+AGG | - | chr5_1:24287052-24287071 | Msa0725000:intron | 30.0% |
| !!! | GATCTATGTCATTTTCATCA+GGG | - | chr5_1:24287053-24287072 | Msa0725000:intron | 30.0% |
| TCATCTGATAAATCTTCTTC+AGG | + | chr5_1:24287106-24287125 | None:intergenic | 30.0% | |
| GAAGAAGATTTATCAGATGA+TGG | - | chr5_1:24287106-24287125 | Msa0725000:intron | 30.0% | |
| !!! | AGTTTTAGAGGTTTATGCAA+CGG | - | chr5_1:24287458-24287477 | Msa0725000:intron | 30.0% |
| CAACGTAATTAACTGAAGTT+TGG | - | chr5_1:24287527-24287546 | Msa0725000:intron | 30.0% | |
| GTCTTTACATATGACAAACA+AGG | + | chr5_1:24287557-24287576 | None:intergenic | 30.0% | |
| GTTTGTCATATGTAAAGACT+TGG | - | chr5_1:24287558-24287577 | Msa0725000:CDS | 30.0% | |
| CCTCAAGAACAATTATATTG+AGG | + | chr5_1:24288094-24288113 | None:intergenic | 30.0% | |
| CCTCAATATAATTGTTCTTG+AGG | - | chr5_1:24288091-24288110 | Msa0725000:intron | 30.0% | |
| TCTTTGACCATTTGAATTTC+TGG | + | chr5_1:24288459-24288478 | None:intergenic | 30.0% | |
| ! | AGTTTAAGCAACATGTTTTG+TGG | - | chr5_1:24288483-24288502 | Msa0725000:intron | 30.0% |
| TTTCGATTAAACGGTCTTTA+CGG | - | chr5_1:24288810-24288829 | Msa0725000:five_prime_UTR | 30.0% | |
| ! | CGAATAAGATGGAGAGTTTT+AGG | + | chr5_1:24286372-24286391 | None:intergenic | 35.0% |
| ! | CTCCATCTTATTCGATTTGA+AGG | - | chr5_1:24286378-24286397 | Msa0725000:three_prime_UTR | 35.0% |
| GTCCTTCAAATCGAATAAGA+TGG | + | chr5_1:24286383-24286402 | None:intergenic | 35.0% | |
| !! | ATGGTTGATGATGATCATCA+TGG | + | chr5_1:24286677-24286696 | None:intergenic | 35.0% |
| AGAATTGAGTTCAGTGAAGA+TGG | + | chr5_1:24286696-24286715 | None:intergenic | 35.0% | |
| ATTCTACCCCAAGATTATCA+TGG | - | chr5_1:24286711-24286730 | Msa0725000:CDS | 35.0% | |
| TGCATACCATGATAATCTTG+GGG | + | chr5_1:24286720-24286739 | None:intergenic | 35.0% | |
| ! | TTTTCATCAGGGATTGAACT+TGG | - | chr5_1:24287064-24287083 | Msa0725000:intron | 35.0% |
| !!! | CTTGAGAAGAGTTTTGAACT+TGG | - | chr5_1:24287181-24287200 | Msa0725000:intron | 35.0% |
| AACCTAGACAAGTTGCTATA+TGG | - | chr5_1:24287257-24287276 | Msa0725000:intron | 35.0% | |
| AACCATATAGCAACTTGTCT+AGG | + | chr5_1:24287262-24287281 | None:intergenic | 35.0% | |
| TTCAAAATAGAAGGGCTAGA+TGG | - | chr5_1:24287281-24287300 | Msa0725000:intron | 35.0% | |
| ! | AAACCTCAGCTTGAAGTTTT+TGG | + | chr5_1:24287396-24287415 | None:intergenic | 35.0% |
| TAGAGAATAGGTGAAAGGAA+AGG | + | chr5_1:24287874-24287893 | None:intergenic | 35.0% | |
| GATGTTAGAGAATAGGTGAA+AGG | + | chr5_1:24287879-24287898 | None:intergenic | 35.0% | |
| !! | TTCAGGTTGATTGATTCTGT+TGG | + | chr5_1:24288249-24288268 | None:intergenic | 35.0% |
| AACCTGAACAAAGAAACAGA+AGG | - | chr5_1:24288261-24288280 | Msa0725000:CDS | 35.0% | |
| ! | ATCCTTCTGTTTCTTTGTTC+AGG | + | chr5_1:24288266-24288285 | None:intergenic | 35.0% |
| GAACAGTTCAGATATCAAGT+TGG | - | chr5_1:24288305-24288324 | Msa0725000:CDS | 35.0% | |
| ! | AGCTTTTCCAAACTTCTTCA+AGG | - | chr5_1:24288433-24288452 | Msa0725000:intron | 35.0% |
| TTCAAGGCCAGAAATTCAAA+TGG | - | chr5_1:24288449-24288468 | Msa0725000:intron | 35.0% | |
| ! | AAGCAACATGTTTTGTGGTA+TGG | - | chr5_1:24288488-24288507 | Msa0725000:intron | 35.0% |
| TGAGGGATGCTTGAATCTAT+AGG | + | chr5_1:24286274-24286293 | None:intergenic | 40.0% | |
| !! | TAGCTGGTCTTGAAGATTTG+TGG | - | chr5_1:24286579-24286598 | Msa0725000:CDS | 40.0% |
| ! | TCATGCATTGTTGCTTGTCT+AGG | + | chr5_1:24286609-24286628 | None:intergenic | 40.0% |
| ACAAGCAACAATGCATGAGA+TGG | - | chr5_1:24286611-24286630 | Msa0725000:CDS | 40.0% | |
| ! | TGATGATCATCATGGTGATG+AGG | + | chr5_1:24286669-24286688 | None:intergenic | 40.0% |
| TGCACAAGACACATAGAGAT+TGG | + | chr5_1:24286965-24286984 | None:intergenic | 40.0% | |
| GATCTCTTCCCTAGAAATGA+TGG | + | chr5_1:24287037-24287056 | None:intergenic | 40.0% | |
| GAAGAAGAGGAGGCTTAATA+TGG | - | chr5_1:24287144-24287163 | Msa0725000:intron | 40.0% | |
| TAGATGGAAGACAAAGCAGT+TGG | - | chr5_1:24287297-24287316 | Msa0725000:intron | 40.0% | |
| GAACCAAAAACTTCAAGCTG+AGG | - | chr5_1:24287390-24287409 | Msa0725000:intron | 40.0% | |
| !! | TTGGTTCGGTTCTAATTTCG+TGG | + | chr5_1:24288175-24288194 | None:intergenic | 40.0% |
| GTATGTTGGTGTGTAGAAAG+AGG | + | chr5_1:24288360-24288379 | None:intergenic | 40.0% | |
| !! | AGGTTCTGCTTGTTGTATGT+TGG | + | chr5_1:24288374-24288393 | None:intergenic | 40.0% |
| !! | TTTCTGGCCTTGAAGAAGTT+TGG | + | chr5_1:24288443-24288462 | None:intergenic | 40.0% |
| ! | TGGATGATCAAGCTGGATTT+TGG | - | chr5_1:24288508-24288527 | Msa0725000:intron | 40.0% |
| AAATGTTGTTGCTCCAACCA+TGG | + | chr5_1:24288534-24288553 | None:intergenic | 40.0% | |
| GAATCCACTACACCTACTTA+TGG | - | chr5_1:24288740-24288759 | Msa0725000:five_prime_UTR | 40.0% | |
| TGACGTTTAGTGTAAGGGGA+TGG | + | chr5_1:24286085-24286104 | None:intergenic | 45.0% | |
| GTCTCTATTCGTCTTGAGCA+TGG | + | chr5_1:24286880-24286899 | None:intergenic | 45.0% | |
| TAGGGGGACCATCATTTCTA+GGG | - | chr5_1:24287026-24287045 | Msa0725000:intron | 45.0% | |
| !! | TCAGATGATGGATCACAAGC+TGG | - | chr5_1:24287118-24287137 | Msa0725000:intron | 45.0% |
| GTAATAAGCTTGAGCCTGAG+AGG | - | chr5_1:24287203-24287222 | Msa0725000:intron | 45.0% | |
| GAAAGAGGACTATCACTTGC+TGG | + | chr5_1:24288345-24288364 | None:intergenic | 45.0% | |
| TGTGGTATGGATGATCAAGC+TGG | - | chr5_1:24288501-24288520 | Msa0725000:intron | 45.0% | |
| !! | ATCAAGCTGGATTTTGGCCA+TGG | - | chr5_1:24288514-24288533 | Msa0725000:intron | 45.0% |
| TGCACCATAAGTAGGTGTAG+TGG | + | chr5_1:24288747-24288766 | None:intergenic | 45.0% | |
| ACGACGATTGCACCATAAGT+AGG | + | chr5_1:24288755-24288774 | None:intergenic | 45.0% | |
| ! | TAACGGATGTCACTGCTCAA+TGG | + | chr5_1:24288844-24288863 | None:intergenic | 45.0% |
| !!! | TTATTATTTTTTATAACAAT+GGG | - | chr5_1:24287709-24287728 | Msa0725000:CDS | 5.0% |
| !! | AATTAAAATTATCTAATTAT+TGG | + | chr5_1:24288194-24288213 | None:intergenic | 5.0% |
| GAAGAGAGAGAGAGAGAGAG+AGG | + | chr5_1:24286300-24286319 | None:intergenic | 50.0% | |
| GTAGGGGGACCATCATTTCT+AGG | - | chr5_1:24287025-24287044 | Msa0725000:intron | 50.0% | |
| CACAAGCTGGAGAGAAGAAG+AGG | - | chr5_1:24287131-24287150 | Msa0725000:intron | 50.0% | |
| AAGCTGGAGAGAAGAAGAGG+AGG | - | chr5_1:24287134-24287153 | Msa0725000:intron | 50.0% | |
| ! | GCAAGCTGCATTTTCCTCTC+AGG | + | chr5_1:24287220-24287239 | None:intergenic | 50.0% |
| CCTAGCAGAAGGTGGAAAGA+AGG | + | chr5_1:24288394-24288413 | None:intergenic | 50.0% | |
| CCTTCTTTCCACCTTCTGCT+AGG | - | chr5_1:24288391-24288410 | Msa0725000:intron | 50.0% | |
| AGCTGAGCAATTCCACCTGA+AGG | + | chr5_1:24288417-24288436 | None:intergenic | 50.0% | |
| !! | AGCTGGATTTTGGCCATGGT+TGG | - | chr5_1:24288518-24288537 | Msa0725000:five_prime_UTR | 50.0% |
| GAGAGAGAGAGAGGTGGTGA+GGG | + | chr5_1:24286291-24286310 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGAGGTGGTG+AGG | + | chr5_1:24286292-24286311 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGAGG+TGG | + | chr5_1:24286297-24286316 | None:intergenic | 55.0% | |
| TCGTGGCAAGAAACTGCGCA+TGG | + | chr5_1:24288158-24288177 | None:intergenic | 55.0% | |
| CCTGAAGGCCTAGCAGAAGG+TGG | + | chr5_1:24288402-24288421 | None:intergenic | 60.0% | |
| CCACCTTCTGCTAGGCCTTC+AGG | - | chr5_1:24288399-24288418 | Msa0725000:intron | 60.0% | |
| CCACCTGAAGGCCTAGCAGA+AGG | + | chr5_1:24288405-24288424 | None:intergenic | 60.0% | |
| CCTTCTGCTAGGCCTTCAGG+TGG | - | chr5_1:24288402-24288421 | Msa0725000:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 24286049 | 24288914 | 24286049 | ID=Msa0725000;Name=Msa0725000 |
| chr5_1 | mRNA | 24286049 | 24288914 | 24286049 | ID=Msa0725000-mRNA-1;Parent=Msa0725000;Name=Msa0725000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=440|1|1|1|0.66|0.5|4|354|277 |
| chr5_1 | exon | 24286049 | 24286741 | 24286049 | ID=Msa0725000-mRNA-1:exon:8898;Parent=Msa0725000-mRNA-1 |
| chr5_1 | exon | 24287552 | 24287934 | 24287552 | ID=Msa0725000-mRNA-1:exon:8897;Parent=Msa0725000-mRNA-1 |
| chr5_1 | exon | 24288231 | 24288385 | 24288231 | ID=Msa0725000-mRNA-1:exon:8896;Parent=Msa0725000-mRNA-1 |
| chr5_1 | exon | 24288518 | 24288914 | 24288518 | ID=Msa0725000-mRNA-1:exon:8895;Parent=Msa0725000-mRNA-1 |
| chr5_1 | five_prime_UTR | 24288518 | 24288914 | 24288518 | ID=Msa0725000-mRNA-1:five_prime_utr;Parent=Msa0725000-mRNA-1 |
| chr5_1 | five_prime_UTR | 24288343 | 24288385 | 24288343 | ID=Msa0725000-mRNA-1:five_prime_utr;Parent=Msa0725000-mRNA-1 |
| chr5_1 | CDS | 24288231 | 24288342 | 24288231 | ID=Msa0725000-mRNA-1:cds;Parent=Msa0725000-mRNA-1 |
| chr5_1 | CDS | 24287552 | 24287934 | 24287552 | ID=Msa0725000-mRNA-1:cds;Parent=Msa0725000-mRNA-1 |
| chr5_1 | CDS | 24286403 | 24286741 | 24286403 | ID=Msa0725000-mRNA-1:cds;Parent=Msa0725000-mRNA-1 |
| chr5_1 | three_prime_UTR | 24286049 | 24286402 | 24286049 | ID=Msa0725000-mRNA-1:three_prime_utr;Parent=Msa0725000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
