AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1278990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1278990 MtrunA17_Chr8g0349091 97.376 343 9 0 1 343 1 343 0.0 675
Msa1278990 MtrunA17_Chr7g0247431 61.143 350 125 10 1 343 1 346 6.85e-114 334
Msa1278990 MtrunA17_Chr5g0397551 44.220 346 165 9 1 343 1 321 2.49e-76 237
Msa1278990 MtrunA17_Chr8g0386741 44.847 359 174 12 1 343 1 351 1.33e-67 216
Msa1278990 MtrunA17_Chr1g0179461 51.163 215 94 4 88 291 68 282 5.90e-60 196
Msa1278990 MtrunA17_Chr4g0054661 51.295 193 78 4 88 271 72 257 4.03e-52 176
Msa1278990 MtrunA17_Chr7g0245841 46.875 224 110 2 89 311 60 275 6.61e-51 172
Msa1278990 MtrunA17_Chr4g0056761 42.403 283 129 7 78 340 61 329 2.72e-50 170
Msa1278990 MtrunA17_Chr8g0351761 49.510 204 97 2 89 286 71 274 1.92e-47 164
Msa1278990 MtrunA17_Chr1g0188211 42.969 256 119 8 89 320 49 301 1.11e-45 159
Msa1278990 MtrunA17_Chr5g0398621 40.887 203 99 3 87 283 44 231 9.96e-41 143
Msa1278990 MtrunA17_Chr6g0476061 41.148 209 105 6 89 283 51 255 4.73e-34 127
Msa1278990 MtrunA17_Chr1g0165101 39.819 221 101 6 90 291 86 293 2.53e-33 126
Msa1278990 MtrunA17_Chr1g0190011 40.860 186 100 4 89 270 43 222 2.64e-30 117
Msa1278990 MtrunA17_Chr7g0274821 43.000 200 103 3 86 282 71 262 3.89e-30 118
Msa1278990 MtrunA17_Chr4g0027371 50.806 124 58 2 150 270 14 137 8.80e-29 111
Msa1278990 MtrunA17_Chr4g0027351 48.800 125 61 2 144 267 8 130 1.61e-28 107
Msa1278990 MtrunA17_Chr4g0027331 48.387 124 61 2 144 264 8 131 7.93e-28 105
Msa1278990 MtrunA17_Chr4g0027301 41.935 124 69 2 147 267 18 141 5.84e-22 90.5
Msa1278990 MtrunA17_Chr3g0133051 38.000 150 89 2 122 270 71 217 2.79e-21 92.4
Msa1278990 MtrunA17_Chr5g0417581 36.170 141 74 3 145 270 9 148 2.82e-20 87.4
Msa1278990 MtrunA17_Chr6g0476241 36.275 204 107 9 89 288 120 304 2.48e-18 84.3
Msa1278990 MtrunA17_Chr1g0168121 40.411 146 81 3 125 270 42 181 9.89e-18 82.0
Msa1278990 MtrunA17_Chr3g0086021 45.946 111 54 3 167 274 118 225 7.09e-17 80.1
Msa1278990 MtrunA17_Chr5g0427311 36.508 126 78 2 146 270 71 195 2.88e-16 77.0
Msa1278990 MtrunA17_Chr8g0351651 36.242 149 89 2 122 270 83 225 1.12e-15 76.6
Msa1278990 MtrunA17_Chr5g0400531 41.860 129 61 5 90 210 121 243 1.20e-15 75.5
Msa1278990 MtrunA17_Chr5g0398531 37.162 148 87 2 123 270 98 239 1.22e-15 76.6
Msa1278990 MtrunA17_Chr1g0190051 38.182 165 94 4 125 289 74 230 2.52e-15 75.5
Msa1278990 MtrunA17_Chr3g0112131 40.800 125 71 2 146 270 97 218 3.60e-15 75.1
Msa1278990 MtrunA17_Chr5g0443311 31.776 214 134 5 122 329 48 255 8.76e-15 73.2
Msa1278990 MtrunA17_Chr4g0054651 39.200 125 73 1 146 270 94 215 1.73e-12 67.0
Msa1278990 MtrunA17_Chr7g0250031 38.400 125 74 1 146 270 75 196 1.32e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1278990 AT2G45850.1 54.062 357 141 10 1 343 1 348 4.81e-100 299
Msa1278990 AT2G45850.2 54.062 357 141 10 1 343 1 348 4.81e-100 299
Msa1278990 AT3G61310.1 49.176 364 154 11 1 343 1 354 2.40e-83 257
Msa1278990 AT2G45850.3 55.477 283 107 7 1 270 1 277 2.39e-76 236
Msa1278990 AT4G12080.1 44.928 276 117 6 89 340 89 353 1.63e-66 213
Msa1278990 AT2G33620.1 50.588 255 100 9 75 322 82 317 3.81e-66 213
Msa1278990 AT2G33620.4 50.588 255 100 9 75 322 82 317 3.81e-66 213
Msa1278990 AT2G33620.2 50.588 255 100 9 75 322 82 317 3.81e-66 213
Msa1278990 AT2G33620.3 50.588 255 100 9 75 322 82 317 3.81e-66 213
Msa1278990 AT1G63470.1 46.909 275 125 6 89 343 105 378 1.16e-62 204
Msa1278990 AT1G63480.5 45.725 269 126 7 89 343 93 355 5.36e-62 202
Msa1278990 AT1G63480.7 45.725 269 126 7 89 343 93 355 5.36e-62 202
Msa1278990 AT1G63480.4 45.725 269 126 7 89 343 93 355 5.36e-62 202
Msa1278990 AT1G63480.3 45.725 269 126 7 89 343 93 355 5.36e-62 202
Msa1278990 AT1G63480.6 45.725 269 126 7 89 343 93 355 5.36e-62 202
Msa1278990 AT1G63480.2 45.725 269 126 7 89 343 99 361 6.37e-62 202
Msa1278990 AT1G63480.1 45.725 269 126 7 89 343 99 361 6.37e-62 202
Msa1278990 AT4G17950.1 48.869 221 77 5 89 278 131 346 2.26e-54 184
Msa1278990 AT4G25320.1 47.619 210 96 3 83 278 80 289 2.42e-54 183
Msa1278990 AT5G46640.1 53.140 207 75 3 89 278 102 303 2.24e-53 180
Msa1278990 AT4G22770.2 42.537 268 123 7 87 335 70 325 1.17e-51 174
Msa1278990 AT4G22770.1 42.537 268 123 7 87 335 70 325 1.17e-51 174
Msa1278990 AT5G62260.1 42.291 227 110 5 77 283 63 288 1.23e-46 163
Msa1278990 AT5G62260.3 42.291 227 110 5 77 283 63 288 1.23e-46 163
Msa1278990 AT5G51590.1 43.694 222 85 4 89 273 78 296 2.87e-46 162
Msa1278990 AT4G00200.2 50.485 206 77 4 77 271 48 239 2.94e-46 160
Msa1278990 AT4G00200.1 50.485 206 77 4 77 271 48 239 2.94e-46 160
Msa1278990 AT5G62260.2 42.791 215 102 5 77 271 63 276 3.56e-44 154
Msa1278990 AT3G04590.1 40.952 210 93 5 77 272 93 285 4.05e-36 133
Msa1278990 AT3G04590.2 41.206 199 104 3 77 270 93 283 3.32e-35 133
Msa1278990 AT2G36560.1 43.089 123 67 3 152 272 102 223 5.04e-22 97.4
Msa1278990 AT3G60870.1 36.508 189 96 6 88 270 26 196 2.94e-20 89.4
Msa1278990 AT4G14465.1 44.340 106 56 1 118 223 60 162 1.56e-19 87.4
Msa1278990 AT5G49700.1 31.844 179 113 4 122 296 53 226 5.21e-19 85.9
Msa1278990 AT1G76500.1 35.329 167 93 3 113 270 60 220 9.14e-18 82.8
Msa1278990 AT2G45430.1 35.165 182 108 4 122 299 86 261 4.37e-16 78.2
Msa1278990 AT2G42940.1 40.000 150 84 3 122 271 50 193 5.12e-16 77.4
Msa1278990 AT5G28590.1 37.313 134 58 2 149 282 24 131 5.95e-15 73.6
Msa1278990 AT1G14490.2 29.897 194 117 5 106 291 11 193 3.52e-14 71.2
Msa1278990 AT4G12050.1 40.000 150 83 4 122 270 115 258 3.86e-14 72.8
Msa1278990 AT3G04570.1 37.888 161 86 4 118 270 73 227 4.17e-14 72.4
Msa1278990 AT3G55560.1 40.800 125 72 1 146 270 106 228 7.10e-14 71.6
Msa1278990 AT1G14490.1 31.034 174 107 4 126 291 6 174 1.01e-13 69.7
Msa1278990 AT4G22810.1 37.500 152 86 3 122 270 102 247 1.44e-13 70.9
Msa1278990 AT2G35270.1 35.811 148 89 2 123 270 76 217 1.29e-12 67.8
Msa1278990 AT1G20900.1 37.647 170 85 4 110 270 77 234 1.52e-12 67.8
Msa1278990 AT4G35390.1 36.486 148 86 3 125 270 63 204 6.86e-11 62.8

Find 152 sgRNAs with CRISPR-Local

Find 490 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCATTCTTCTTGTTCT+TGG 0.101201 8_3:-15634130 None:intergenic
GGCGCCCTCGACCGCGTTTC+TGG 0.107198 8_3:-15629339 None:intergenic
ATCAATGTAGGTGCTCCTTC+TGG 0.171915 8_3:+15629184 Msa1278990:CDS
TAGAATTCTTTCTTGACTTT+TGG 0.210221 8_3:+15634443 Msa1278990:three_prime_UTR
CTTTGTCAGGCTTCGACATC+TGG 0.233098 8_3:+15632932 Msa1278990:CDS
TGGACTTGTGGTACGGTTCC+AGG 0.263718 8_3:-15629319 None:intergenic
CTCCAACATCTCTCAATTCT+TGG 0.272580 8_3:+15634247 Msa1278990:CDS
CGCGGTCGAGGGCGCCCTCC+AGG 0.273094 8_3:+15629346 Msa1278990:CDS
GACTTAGGGCTTGAAGTTCT+TGG 0.315187 8_3:+15634650 Msa1278990:three_prime_UTR
CAGAGATAGGTGGTAAAGTT+TGG 0.328171 8_3:+15628879 Msa1278990:intron
CCGATGGATTCTTCTGGAAT+TGG 0.331532 8_3:+15629151 Msa1278990:CDS
TCAATGTAGGTGCTCCTTCT+GGG 0.334005 8_3:+15629185 Msa1278990:CDS
CGAGGGCGCCCTCCAGGGTC+CGG 0.339305 8_3:+15629352 Msa1278990:CDS
CAGAGAGGATTACCTGGTTC+TGG 0.345081 8_3:+15629025 Msa1278990:CDS
AAACAACAGTTGGCTTCTTT+CGG 0.348817 8_3:+15629379 Msa1278990:CDS
GTATACATATTTAAGATTCA+TGG 0.349303 8_3:+15634365 Msa1278990:three_prime_UTR
TATTAGCATACACCAGTATT+GGG 0.349465 8_3:+15634343 Msa1278990:three_prime_UTR
CTATGGTTGATTGACTTTAG+AGG 0.353332 8_3:+15634483 Msa1278990:three_prime_UTR
AATGGAAATAATCTTGTTAG+AGG 0.356808 8_3:-15634681 None:intergenic
CTAACAAGATTATTTCCATT+AGG 0.361271 8_3:+15634684 Msa1278990:three_prime_UTR
TAGCCTGACGGGCTCTTACT+TGG 0.364205 8_3:+15633376 Msa1278990:CDS
CTCTACTGTGACACTTTGTC+AGG 0.364472 8_3:+15632919 Msa1278990:CDS
CATGACTATCAGGTGATAAT+CGG 0.364976 8_3:+15634081 Msa1278990:intron
GGATGGCTTGCTGGTGTTGT+TGG 0.373412 8_3:-15629298 None:intergenic
ATCTCTAGTTCAGCTGGAAA+TGG 0.373990 8_3:+15631827 Msa1278990:CDS
TTTGTCATTAGATTGTTTCA+TGG 0.378708 8_3:+15634720 Msa1278990:three_prime_UTR
TCTTCGACATGTGGTGACTT+AGG 0.388356 8_3:+15634635 Msa1278990:three_prime_UTR
ATATGTTCAACGGTTTCATA+TGG 0.392152 8_3:-15627693 None:intergenic
CATTGCTGCAAGTCCTGTTC+AGG 0.396488 8_3:+15633499 Msa1278990:CDS
GCATTAAATCAATGTCCATA+TGG 0.398657 8_3:-15634302 None:intergenic
AGTCCTGATGGCCGTGTCAT+TGG 0.401648 8_3:+15633455 Msa1278990:CDS
CTTCGACATGTGGTGACTTA+GGG 0.404144 8_3:+15634636 Msa1278990:three_prime_UTR
GATGATTTATTTCTGAATCC+AGG 0.404267 8_3:+15634765 Msa1278990:three_prime_UTR
GACCAAATGGCGGCATTATC+CGG 0.406280 8_3:+15628983 Msa1278990:CDS
ACTTGATTGAAACGATGAAT+TGG 0.406986 8_3:-15629095 None:intergenic
ACGGTTCCAGGATGGCTTGC+TGG 0.407828 8_3:-15629307 None:intergenic
GACATAACAAATATAGTTCT+AGG 0.411478 8_3:-15632881 None:intergenic
CATGTCATCTCCATTGCAAT+TGG 0.414837 8_3:+15631860 Msa1278990:CDS
GAAATGCTATTCATTGCAAC+TGG 0.419844 8_3:-15634207 None:intergenic
AGAATAGCAGTTACCTGAAC+AGG 0.423912 8_3:-15633512 None:intergenic
TAAATATGTATACCCAATAC+TGG 0.429520 8_3:-15634355 None:intergenic
ATTGGTGGTGGTGGTACTAT+TGG 0.430130 8_3:+15629118 Msa1278990:CDS
TTGGATTACTGAATACTAAA+GGG 0.433448 8_3:+15628898 Msa1278990:five_prime_UTR
TTTGGATTACTGAATACTAA+AGG 0.434735 8_3:+15628897 Msa1278990:five_prime_UTR
TTATTAGCATACACCAGTAT+TGG 0.440856 8_3:+15634342 Msa1278990:three_prime_UTR
TTTGAAACAAAACCCGGTCT+AGG 0.443958 8_3:-15634793 None:intergenic
TTTGTCAGGCTTCGACATCT+GGG 0.444025 8_3:+15632933 Msa1278990:CDS
AAAATCGCAAGATTTCCTAA+TGG 0.447477 8_3:-15634699 None:intergenic
TCATCGTTTCAATCAAGTAT+TGG 0.453396 8_3:+15629100 Msa1278990:CDS
GTTGGAGTCAGACTTTGATT+TGG 0.457634 8_3:-15634231 None:intergenic
TTGGCCTGCATCGCGTCCAT+TGG 0.459716 8_3:+15634266 Msa1278990:CDS
AACCGGATAATGCCGCCATT+TGG 0.465036 8_3:-15628985 None:intergenic
CAACCAAGTAAGAGCCCGTC+AGG 0.465611 8_3:-15633379 None:intergenic
CATAAAGTATGATGCAGAAC+CGG 0.471132 8_3:-15629002 None:intergenic
GTATTCAGCGAACGAATACC+AGG 0.471643 8_3:-15629073 None:intergenic
GAGGGCGCCCTCCAGGGTCC+GGG 0.478636 8_3:+15629353 Msa1278990:CDS
ACGATGCCGATGGATTCTTC+TGG 0.481478 8_3:+15629145 Msa1278990:CDS
CAACTGGTGAACCTGGCAAA+AGG 0.482705 8_3:+15629218 Msa1278990:CDS
GGTTTGATCTCTAGTTCAGC+TGG 0.488171 8_3:+15631821 Msa1278990:CDS
CATTAAATCAATGTCCATAT+GGG 0.490752 8_3:-15634301 None:intergenic
CAATCAAGTATTGGTGGTGG+TGG 0.492198 8_3:+15629109 Msa1278990:CDS
ACTGCTTCAACTGGTGAACC+TGG 0.492874 8_3:+15629211 Msa1278990:CDS
ACAACACCAGCAAGCCATCC+TGG 0.492885 8_3:+15629301 Msa1278990:CDS
ATATCCAATGGACGCGATGC+AGG 0.493146 8_3:-15634270 None:intergenic
CGTGGAAGGCCTAGAAAATA+CGG 0.495965 8_3:+15629244 Msa1278990:CDS
ATGATTTATTTCTGAATCCA+GGG 0.496324 8_3:+15634766 Msa1278990:three_prime_UTR
CCTGATGGCCGTGTCATTGG+TGG 0.498370 8_3:+15633458 Msa1278990:CDS
GGCCAAGAATTGAGAGATGT+TGG 0.498691 8_3:-15634249 None:intergenic
CAAGTCCAGAAACGCGGTCG+AGG 0.498900 8_3:+15629334 Msa1278990:CDS
GATGGCTCGCGTAATCGAAC+GGG 0.499725 8_3:+15633410 Msa1278990:CDS
CCACCAATGACACGGCCATC+AGG 0.499849 8_3:-15633458 None:intergenic
GGGAATTATGCAATTCATGT+TGG 0.500890 8_3:-15629051 None:intergenic
TCATGTTGGTTTCCAGAACC+AGG 0.501139 8_3:-15629037 None:intergenic
TATGTTCAACGGTTTCATAT+GGG 0.503006 8_3:-15627692 None:intergenic
GGGGAATTAAAGAGAGATGA+TGG 0.503265 8_3:-15627672 None:intergenic
AATGACACGGCCATCAGGAC+TGG 0.504441 8_3:-15633453 None:intergenic
GTTTCTCTTGCCAGTCCTGA+TGG 0.511754 8_3:+15633443 Msa1278990:CDS
GGATATGCGTAATTCCCATA+TGG 0.512750 8_3:+15634287 Msa1278990:CDS
GGATCTCAATGTATCAATGT+AGG 0.515058 8_3:+15629172 Msa1278990:CDS
CGTGTCATTGGTGGAGGCGT+CGG 0.516266 8_3:+15633467 Msa1278990:CDS
TGATAATCGGGAGCTTTATG+TGG 0.516440 8_3:+15634094 Msa1278990:CDS
ATGACTATCAGGTGATAATC+GGG 0.516769 8_3:+15634082 Msa1278990:intron
GGGGCTTGAATTTAAATGCA+TGG 0.521445 8_3:+15628952 Msa1278990:exon
ATCAACGAGATTAGCAGAAG+TGG 0.521490 8_3:+15634608 Msa1278990:three_prime_UTR
CACAGTAGAGACAGCACCAT+TGG 0.523000 8_3:-15632906 None:intergenic
GCGGTCGAGGGCGCCCTCCA+GGG 0.524809 8_3:+15629347 Msa1278990:CDS
GTCATTGGTGGAGGCGTCGG+TGG 0.527830 8_3:+15633470 Msa1278990:CDS
CATGGATCGAGGGGACCAAA+TGG 0.527963 8_3:+15628970 Msa1278990:exon
CCTAGAAAATACGGAGCTGA+TGG 0.528595 8_3:+15629253 Msa1278990:CDS
AATTTAAATGCATGGATCGA+GGG 0.528702 8_3:+15628960 Msa1278990:exon
GATTCAGAAGATCAAGAAGT+TGG 0.530546 8_3:+15634150 Msa1278990:CDS
GCGTTTCTGGACTTGTGGTA+CGG 0.532962 8_3:-15629326 None:intergenic
TTGTCAGGCTTCGACATCTG+GGG 0.533182 8_3:+15632934 Msa1278990:CDS
AATCCAGGGAAAACCTAGAC+CGG 0.535670 8_3:+15634780 Msa1278990:three_prime_UTR
TAGAACTATATTTGTTATGT+CGG 0.537936 8_3:+15632883 Msa1278990:CDS
AGATCAAGAAGTTGGTGTAG+AGG 0.538029 8_3:+15634158 Msa1278990:CDS
TTTGAGATACTTAGCCTGAC+GGG 0.538140 8_3:+15633365 Msa1278990:CDS
TTGTTGTCAAAGATTGTGAA+GGG 0.543171 8_3:+15628932 Msa1278990:five_prime_UTR
CAAGGGTATGTCGCGACTCG+TGG 0.544115 8_3:+15634567 Msa1278990:three_prime_UTR
TTTGTTGTCAAAGATTGTGA+AGG 0.545465 8_3:+15628931 Msa1278990:five_prime_UTR
ATCGGGAGCTTTATGTGGGG+TGG 0.551191 8_3:+15634099 Msa1278990:CDS
GAAAGTTGAAATATGTTCAA+CGG 0.552177 8_3:-15627703 None:intergenic
GAATTTAAATGCATGGATCG+AGG 0.552782 8_3:+15628959 Msa1278990:exon
CTGGCAAAAGGAAGCGTGGA+AGG 0.559266 8_3:+15629230 Msa1278990:CDS
ATATTTGTTATGTCGGCCAA+TGG 0.560132 8_3:+15632890 Msa1278990:CDS
ATGTTCAACGGTTTCATATG+GGG 0.561316 8_3:-15627691 None:intergenic
GATGGCCGTGTCATTGGTGG+AGG 0.565639 8_3:+15633461 Msa1278990:CDS
CATGAATTGCATAATTCCCC+TGG 0.566365 8_3:+15629055 Msa1278990:CDS
GATAATCGGGAGCTTTATGT+GGG 0.567733 8_3:+15634095 Msa1278990:CDS
TCGTTTCAATCAAGTATTGG+TGG 0.568199 8_3:+15629103 Msa1278990:CDS
AGAGAGAATCAAAACTCAAG+AGG 0.569051 8_3:-15627820 None:intergenic
CAATGTAGGTGCTCCTTCTG+GGG 0.569506 8_3:+15629186 Msa1278990:CDS
GTAGAGGAAAATCATCATCA+TGG 0.572777 8_3:+15634174 Msa1278990:CDS
AAGTCCAGAAACGCGGTCGA+GGG 0.575526 8_3:+15629335 Msa1278990:CDS
CGACCGCGTTTCTGGACTTG+TGG 0.581350 8_3:-15629331 None:intergenic
GCATACTTCTCCAATTGCAA+TGG 0.581715 8_3:-15631870 None:intergenic
TGTCAGGCTTCGACATCTGG+GGG 0.583807 8_3:+15632935 Msa1278990:CDS
AATTTGATTAATGTCAGCTA+TGG 0.585484 8_3:+15634466 Msa1278990:three_prime_UTR
ATGGAAATAATCTTGTTAGA+GGG 0.585553 8_3:-15634680 None:intergenic
TATTGGATCCACGATGCCGA+TGG 0.589524 8_3:+15629135 Msa1278990:CDS
CGACGCCTCCACCAATGACA+CGG 0.592769 8_3:-15633466 None:intergenic
TGATTGTGATTGTGATCAAG+TGG 0.595245 8_3:-15627763 None:intergenic
TTTCAATCAAGTATTGGTGG+TGG 0.596117 8_3:+15629106 Msa1278990:CDS
AGGGCTTGAAGTTCTTGGAG+AGG 0.596838 8_3:+15634655 Msa1278990:three_prime_UTR
TTTATGCAGAGAGGATTACC+TGG 0.598429 8_3:+15629019 Msa1278990:CDS
TATTCTTCACGAAGATGTGG+TGG 0.598478 8_3:-15627736 None:intergenic
CTTGTGGTACGGTTCCAGGA+TGG 0.602775 8_3:-15629315 None:intergenic
ATTTAAATGCATGGATCGAG+GGG 0.603640 8_3:+15628961 Msa1278990:exon
TCATATTCTTCACGAAGATG+TGG 0.604516 8_3:-15627739 None:intergenic
TGGGAATTACGCATATCCAA+TGG 0.604904 8_3:-15634282 None:intergenic
GAGAGAATCAAAACTCAAGA+GGG 0.605371 8_3:-15627819 None:intergenic
AACAGATTTGAAACAAAACC+CGG 0.611352 8_3:-15634799 None:intergenic
GCATCATACTTTATGCAGAG+AGG 0.620965 8_3:+15629010 Msa1278990:CDS
AATGTAGGTGCTCCTTCTGG+GGG 0.621905 8_3:+15629187 Msa1278990:CDS
ATGGACATTGATTTAATGCG+TGG 0.625354 8_3:+15634306 Msa1278990:CDS
AATTAAAGAGAGATGATGGT+GGG 0.628694 8_3:-15627668 None:intergenic
ATCCAGGGAAAACCTAGACC+GGG 0.634249 8_3:+15634781 Msa1278990:three_prime_UTR
GGATCGAGGGGACCAAATGG+CGG 0.637165 8_3:+15628973 Msa1278990:CDS
TGTTGTCAAAGATTGTGAAG+GGG 0.637737 8_3:+15628933 Msa1278990:five_prime_UTR
TGGACATTGATTTAATGCGT+GGG 0.639036 8_3:+15634307 Msa1278990:CDS
TACTTGGTTGCTGATAACGA+TGG 0.650007 8_3:+15633392 Msa1278990:CDS
CCAATTCCAGAAGAATCCAT+CGG 0.651481 8_3:-15629151 None:intergenic
GAACCTGGCAAAAGGAAGCG+TGG 0.653132 8_3:+15629226 Msa1278990:CDS
AGTGGCTAATCTTCGACATG+TGG 0.663359 8_3:+15634626 Msa1278990:three_prime_UTR
AGAAGAATCCATCGGCATCG+TGG 0.669599 8_3:-15629143 None:intergenic
GAATTAAAGAGAGATGATGG+TGG 0.672734 8_3:-15627669 None:intergenic
TTACATGTCACAGAGATAGG+TGG 0.673770 8_3:+15628869 Msa1278990:intron
ATTGCAATGGAGATGACATG+AGG 0.685631 8_3:-15631857 None:intergenic
TATTCAGCGAACGAATACCA+GGG 0.712279 8_3:-15629072 None:intergenic
ATTCAGCGAACGAATACCAG+GGG 0.720106 8_3:-15629071 None:intergenic
ATAATCGGGAGCTTTATGTG+GGG 0.762572 8_3:+15634096 Msa1278990:CDS
GTACCACAAGTCCAGAAACG+CGG 0.767851 8_3:+15629328 Msa1278990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTAAATTTGTTAAAT+GGG - chr8_3:15630404-15630423 None:intergenic 10.0%
!!! AATGATTTAAATTTGTTAAA+TGG - chr8_3:15630405-15630424 None:intergenic 10.0%
!!! TAACAAGAAATTTTTTATTT+TGG + chr8_3:15630560-15630579 Msa1278990:intron 10.0%
!!! TATAGATGTTTTTTTTTTTT+TGG + chr8_3:15630833-15630852 Msa1278990:intron 10.0%
!!! ATAGATGTTTTTTTTTTTTT+GGG + chr8_3:15630834-15630853 Msa1278990:intron 10.0%
!! ATTACTTATATTTATTCATA+CGG + chr8_3:15631364-15631383 Msa1278990:intron 10.0%
!!! GTGTAAATTTTATAAAATAA+GGG - chr8_3:15632348-15632367 None:intergenic 10.0%
!!! AGAATTTAATCAATTTTTAT+AGG + chr8_3:15633172-15633191 Msa1278990:intron 10.0%
!!! GTTTAATTTTGATAATATAT+TGG - chr8_3:15634014-15634033 None:intergenic 10.0%
!!! TGCATAATTTTATTTTTCTA+GGG - chr8_3:15627410-15627429 None:intergenic 15.0%
!!! TTGCATAATTTTATTTTTCT+AGG - chr8_3:15627411-15627430 None:intergenic 15.0%
!!! ATGATTTTTTTCTTCTTTTA+TGG + chr8_3:15628071-15628090 Msa1278990:intron 15.0%
!!! TTAAAGATTTTGTTATTGTT+TGG + chr8_3:15628163-15628182 Msa1278990:intron 15.0%
!!! ATTTTTTTATTTGTTCATAC+CGG + chr8_3:15629543-15629562 Msa1278990:intron 15.0%
!! AATTTAATCAGTAAAATCTT+TGG - chr8_3:15630092-15630111 None:intergenic 15.0%
!! TTGTATTGAAACAAATATAA+AGG - chr8_3:15630282-15630301 None:intergenic 15.0%
!!! TGTGTATTAAAATTTAAAAC+AGG - chr8_3:15630806-15630825 None:intergenic 15.0%
!!! GCTTTTCTTTTTTTAAATTA+CGG + chr8_3:15631017-15631036 Msa1278990:intron 15.0%
!!! TTACTTTTCATTTTAAATTG+CGG - chr8_3:15631146-15631165 None:intergenic 15.0%
!! TATATATTACATAAAGACTT+AGG - chr8_3:15631238-15631257 None:intergenic 15.0%
!! TAAGTCTTTATGTAATATAT+AGG + chr8_3:15631237-15631256 Msa1278990:intron 15.0%
!!! CAATTTTCTTGTTTAAATTA+CGG + chr8_3:15632031-15632050 Msa1278990:intron 15.0%
!!! TTTTTAAAAAACATTTCCTA+GGG + chr8_3:15632133-15632152 Msa1278990:intron 15.0%
!! AATCATAAATAATAGATATG+TGG - chr8_3:15632316-15632335 None:intergenic 15.0%
!!! GGTGTAAATTTTATAAAATA+AGG - chr8_3:15632349-15632368 None:intergenic 15.0%
!! CTAGTAATAATTTGATAAAA+TGG - chr8_3:15632462-15632481 None:intergenic 15.0%
!!! TTGCTTATTTTATATCAATA+CGG + chr8_3:15632505-15632524 Msa1278990:intron 15.0%
!!! TTTTAAAATTTTCGGATTTT+TGG - chr8_3:15632573-15632592 None:intergenic 15.0%
!! TAAATACTAAAACATATCTT+TGG - chr8_3:15632626-15632645 None:intergenic 15.0%
!! TGATTATGTTTAATAATTTG+TGG + chr8_3:15633320-15633339 Msa1278990:intron 15.0%
!! ACTACAGAATGTAAAAAAAA+GGG - chr8_3:15627556-15627575 None:intergenic 20.0%
!! AACTACAGAATGTAAAAAAA+AGG - chr8_3:15627557-15627576 None:intergenic 20.0%
!!! TTTCATGTTTCTATATAGTT+TGG + chr8_3:15628257-15628276 Msa1278990:intron 20.0%
!!! TTTATTTCGTTTTAACCATA+TGG - chr8_3:15628633-15628652 None:intergenic 20.0%
!!! GTTTTTATTTGTATGATTTG+TGG + chr8_3:15628708-15628727 Msa1278990:intron 20.0%
!! TTGTTAATTCAGTTCATTAA+GGG - chr8_3:15629578-15629597 None:intergenic 20.0%
!! TTAATGAACTGAATTAACAA+CGG + chr8_3:15629578-15629597 Msa1278990:intron 20.0%
!!! TCAGTAAAATTTTGAATAGA+CGG - chr8_3:15629631-15629650 None:intergenic 20.0%
!! AAATATTATCTTAGTGACAA+AGG - chr8_3:15630248-15630267 None:intergenic 20.0%
!! AAAATATGCATCAATATTTC+TGG - chr8_3:15630320-15630339 None:intergenic 20.0%
!!! ATATTGATGCATATTTTTAC+TGG + chr8_3:15630323-15630342 Msa1278990:intron 20.0%
!!! TATTGATGCATATTTTTACT+GGG + chr8_3:15630324-15630343 Msa1278990:intron 20.0%
!! AATAAGCTTTCAACTATATT+AGG - chr8_3:15630447-15630466 None:intergenic 20.0%
!!! TGAAAGCTTATTTTTATAGT+TGG + chr8_3:15630455-15630474 Msa1278990:intron 20.0%
!! ATTGTCATCAAAAATATACT+TGG - chr8_3:15630511-15630530 None:intergenic 20.0%
!!! CAAATTTTGTTTTCTTACAT+AGG + chr8_3:15630604-15630623 Msa1278990:intron 20.0%
!! TTAAAAATAAATCTTGACCT+AGG + chr8_3:15630639-15630658 Msa1278990:intron 20.0%
!!! ATTAAAATTTAAAACAGGAC+AGG - chr8_3:15630801-15630820 None:intergenic 20.0%
!!! TGTTTTTTTTTTTTTGGGAT+TGG + chr8_3:15630839-15630858 Msa1278990:intron 20.0%
!!! GTTTTTTTTTTTTTGGGATT+GGG + chr8_3:15630840-15630859 Msa1278990:intron 20.0%
!!! TTTTTTTTTTTTTGGGATTG+GGG + chr8_3:15630841-15630860 Msa1278990:intron 20.0%
!!! TAATTTTGAAACTCTATCTA+CGG - chr8_3:15630895-15630914 None:intergenic 20.0%
!! TAGATAGAGTTTCAAAATTA+AGG + chr8_3:15630895-15630914 Msa1278990:intron 20.0%
!! TAAATAGGTCAAAATGTATA+TGG + chr8_3:15631278-15631297 Msa1278990:intron 20.0%
!!! GAGTTTAGTTTTTAATGAAA+TGG + chr8_3:15631594-15631613 Msa1278990:intron 20.0%
!! TTAACATAAATCAATCACTT+AGG - chr8_3:15631741-15631760 None:intergenic 20.0%
!!! GTGATTGATTTATGTTAATT+TGG + chr8_3:15631743-15631762 Msa1278990:intron 20.0%
!!! AATACATTTTTAGTACCTTT+AGG + chr8_3:15631963-15631982 Msa1278990:intron 20.0%
!!! ATACATTTTTAGTACCTTTA+GGG + chr8_3:15631964-15631983 Msa1278990:intron 20.0%
!!! CTTTTTAAAAAACATTTCCT+AGG + chr8_3:15632132-15632151 Msa1278990:intron 20.0%
!!! TAGCTTTTAAAAGCTTTAAT+TGG + chr8_3:15632258-15632277 Msa1278990:intron 20.0%
!!! AGCTTTTAAAAGCTTTAATT+GGG + chr8_3:15632259-15632278 Msa1278990:intron 20.0%
!! TTATAAAATTTACACCTATC+TGG + chr8_3:15632353-15632372 Msa1278990:intron 20.0%
!!! CCTGTAACTTTTAAAATTTT+CGG - chr8_3:15632581-15632600 None:intergenic 20.0%
!!! TAGAACTATATTTGTTATGT+CGG + chr8_3:15632883-15632902 Msa1278990:CDS 20.0%
!! AGATTATTAACTTCATAACA+TGG - chr8_3:15633232-15633251 None:intergenic 20.0%
!!! TTTCTATGTTTCTAATTTTG+AGG - chr8_3:15633575-15633594 None:intergenic 20.0%
!!! GTATACATATTTAAGATTCA+TGG + chr8_3:15634365-15634384 Msa1278990:three_prime_UTR 20.0%
!!! TTTTTAGATTTTGCTTTTTG+TGG + chr8_3:15634542-15634561 Msa1278990:three_prime_UTR 20.0%
!!! ATTTTATTTTTCTAGGGATG+AGG - chr8_3:15627404-15627423 None:intergenic 25.0%
! GAAAGTTGAAATATGTTCAA+CGG - chr8_3:15627706-15627725 None:intergenic 25.0%
! ATGTGTTAGTATTCATTCAT+AGG + chr8_3:15627883-15627902 Msa1278990:intron 25.0%
! GCTTAAGAAAAAACACAAAA+AGG - chr8_3:15627986-15628005 None:intergenic 25.0%
! ATCAAAGGATAAGCTTAAAA+GGG + chr8_3:15628118-15628137 Msa1278990:intron 25.0%
!!! AAGATTTTGTTATTGTTTGG+TGG + chr8_3:15628166-15628185 Msa1278990:intron 25.0%
!!! TTGCTTTTCACATTTAGATA+TGG + chr8_3:15628429-15628448 Msa1278990:intron 25.0%
!!! ATTGGATTTCATTGATTTCA+TGG + chr8_3:15628809-15628828 Msa1278990:intron 25.0%
! TTTGGATTACTGAATACTAA+AGG + chr8_3:15628897-15628916 Msa1278990:five_prime_UTR 25.0%
! TTGGATTACTGAATACTAAA+GGG + chr8_3:15628898-15628917 Msa1278990:five_prime_UTR 25.0%
!!! CTATTCCACTTTTTATTTTG+TGG + chr8_3:15629409-15629428 Msa1278990:intron 25.0%
! CTATACAATCAAACAAAACA+TGG - chr8_3:15629499-15629518 None:intergenic 25.0%
! GTTGTTAATTCAGTTCATTA+AGG - chr8_3:15629579-15629598 None:intergenic 25.0%
! TTACTGAATACAAAGATAGA+TGG + chr8_3:15629644-15629663 Msa1278990:intron 25.0%
! TACTGAATACAAAGATAGAT+GGG + chr8_3:15629645-15629664 Msa1278990:intron 25.0%
! TTGAAAAACATGTCAAGTAA+CGG - chr8_3:15629870-15629889 None:intergenic 25.0%
! TTGAAAAACATGTCAAGTAA+CGG - chr8_3:15629870-15629889 None:intergenic 25.0%
! CTATATTAGGTAAATAGACT+AGG - chr8_3:15630434-15630453 None:intergenic 25.0%
!!! TTTTTTTTTTTTGGGATTGG+GGG + chr8_3:15630842-15630861 Msa1278990:intron 25.0%
! TCAAAATGTATATGGATTCA+AGG + chr8_3:15631286-15631305 Msa1278990:intron 25.0%
!!! GTCTGACTCTTTTATTTAAA+TGG + chr8_3:15631427-15631446 Msa1278990:intron 25.0%
!! TGGTATAAAGAAGTATAACT+TGG + chr8_3:15631690-15631709 Msa1278990:intron 25.0%
!! GGTATAAAGAAGTATAACTT+GGG + chr8_3:15631691-15631710 Msa1278990:intron 25.0%
!!! TTAATGTTTTGAGTTGTTGT+TGG + chr8_3:15631793-15631812 Msa1278990:intron 25.0%
!!! ATATGTCTGTCGTTTATTTT+TGG + chr8_3:15631936-15631955 Msa1278990:intron 25.0%
!! ATTTTTAAATTACAGACCCT+AGG - chr8_3:15632152-15632171 None:intergenic 25.0%
! TAAAAGCTAATCTACCAAAT+TGG - chr8_3:15632247-15632266 None:intergenic 25.0%
!!! CCGAAAATTTTAAAAGTTAC+AGG + chr8_3:15632578-15632597 Msa1278990:intron 25.0%
! AGGACCAAAGAAATAAAATA+AGG + chr8_3:15632598-15632617 Msa1278990:intron 25.0%
! GGACCAAAGAAATAAAATAA+GGG + chr8_3:15632599-15632618 Msa1278990:intron 25.0%
!!! GTTAACAGTGCTTTTTTTAA+TGG + chr8_3:15632651-15632670 Msa1278990:intron 25.0%
!!! ATGGAAGTACTTTTTTAGAA+AGG + chr8_3:15632670-15632689 Msa1278990:intron 25.0%
!!! TGGAAGTACTTTTTTAGAAA+GGG + chr8_3:15632671-15632690 Msa1278990:intron 25.0%
! ACATGAGACAAAAATTCAAA+CGG - chr8_3:15632756-15632775 None:intergenic 25.0%
! CTTACATATGATTACACAAA+TGG - chr8_3:15632783-15632802 None:intergenic 25.0%
! GACATAACAAATATAGTTCT+AGG - chr8_3:15632884-15632903 None:intergenic 25.0%
! TTCACTAACATTTCCATAAA+GGG - chr8_3:15633116-15633135 None:intergenic 25.0%
! TTTCACTAACATTTCCATAA+AGG - chr8_3:15633117-15633136 None:intergenic 25.0%
!! TAAGCAATTCTTCTAAAGAA+TGG - chr8_3:15633147-15633166 None:intergenic 25.0%
!! TTTTTATAGGCAAATGTTAG+CGG + chr8_3:15633185-15633204 Msa1278990:intron 25.0%
!! CTTATGTTTTCTGTTTGTAT+AGG + chr8_3:15633782-15633801 Msa1278990:intron 25.0%
! TAGCTATCCAAATAAAACTA+GGG - chr8_3:15634049-15634068 None:intergenic 25.0%
! TTAGCTATCCAAATAAAACT+AGG - chr8_3:15634050-15634069 None:intergenic 25.0%
! CATTAAATCAATGTCCATAT+GGG - chr8_3:15634304-15634323 None:intergenic 25.0%
! TAAATATGTATACCCAATAC+TGG - chr8_3:15634358-15634377 None:intergenic 25.0%
!! TAGAATTCTTTCTTGACTTT+TGG + chr8_3:15634443-15634462 Msa1278990:three_prime_UTR 25.0%
! AATTTGATTAATGTCAGCTA+TGG + chr8_3:15634466-15634485 Msa1278990:three_prime_UTR 25.0%
! ATGGAAATAATCTTGTTAGA+GGG - chr8_3:15634683-15634702 None:intergenic 25.0%
! AATGGAAATAATCTTGTTAG+AGG - chr8_3:15634684-15634703 None:intergenic 25.0%
! CTAACAAGATTATTTCCATT+AGG + chr8_3:15634684-15634703 Msa1278990:three_prime_UTR 25.0%
! TTTGTCATTAGATTGTTTCA+TGG + chr8_3:15634720-15634739 Msa1278990:three_prime_UTR 25.0%
!!! ATGATTTATTTCTGAATCCA+GGG + chr8_3:15634766-15634785 Msa1278990:three_prime_UTR 25.0%
! AATTAAAGAGAGATGATGGT+GGG - chr8_3:15627671-15627690 None:intergenic 30.0%
TATGTTCAACGGTTTCATAT+GGG - chr8_3:15627695-15627714 None:intergenic 30.0%
ATATGTTCAACGGTTTCATA+TGG - chr8_3:15627696-15627715 None:intergenic 30.0%
TATCTCTTTCTTATGCTTTG+AGG + chr8_3:15627913-15627932 Msa1278990:intron 30.0%
CATCAAAGGATAAGCTTAAA+AGG + chr8_3:15628117-15628136 Msa1278990:intron 30.0%
CTACAAATTCAATTAGAGTG+AGG - chr8_3:15628311-15628330 None:intergenic 30.0%
! GACAACTAAAAAGTACAACA+AGG - chr8_3:15628355-15628374 None:intergenic 30.0%
TAAATGTGAAAAGCAAGCAA+AGG - chr8_3:15628425-15628444 None:intergenic 30.0%
!! TGGTTGATGAGTTTAAGTTA+AGG + chr8_3:15628495-15628514 Msa1278990:intron 30.0%
! TGATGAGTTTAAGTTAAGGT+CGG + chr8_3:15628499-15628518 Msa1278990:intron 30.0%
ATATGGTTCTCAGAAAAAAG+GGG - chr8_3:15628616-15628635 None:intergenic 30.0%
CATATGGTTCTCAGAAAAAA+GGG - chr8_3:15628617-15628636 None:intergenic 30.0%
! AACTGCTGTCATTGATTATA+TGG + chr8_3:15628743-15628762 Msa1278990:intron 30.0%
ATCAATGAAATCCAATATGC+AGG - chr8_3:15628805-15628824 None:intergenic 30.0%
! ATTTTACATGTCACAGAGAT+AGG + chr8_3:15628866-15628885 Msa1278990:intron 30.0%
! TTTGTTGTCAAAGATTGTGA+AGG + chr8_3:15628931-15628950 Msa1278990:five_prime_UTR 30.0%
TTGTTGTCAAAGATTGTGAA+GGG + chr8_3:15628932-15628951 Msa1278990:five_prime_UTR 30.0%
AATTTAAATGCATGGATCGA+GGG + chr8_3:15628960-15628979 Msa1278990:exon 30.0%
ACTTGATTGAAACGATGAAT+TGG - chr8_3:15629098-15629117 None:intergenic 30.0%
TCATCGTTTCAATCAAGTAT+TGG + chr8_3:15629100-15629119 Msa1278990:CDS 30.0%
AAACGCCACAAAATAAAAAG+TGG - chr8_3:15629417-15629436 None:intergenic 30.0%
TGGAAAAAAAAGTGATGCAA+TGG - chr8_3:15630072-15630091 None:intergenic 30.0%
! CATCGAAACTTAGACTATTT+TGG + chr8_3:15630122-15630141 Msa1278990:intron 30.0%
!!! ACTTAGACTATTTTGGTCAT+TGG + chr8_3:15630129-15630148 Msa1278990:intron 30.0%
! AACAAATAATGTGGACTACT+AGG - chr8_3:15630225-15630244 None:intergenic 30.0%
TGACAAAGGAACAAATAATG+TGG - chr8_3:15630234-15630253 None:intergenic 30.0%
!! ATGCATCAATATTTCTGGTA+TGG - chr8_3:15630315-15630334 None:intergenic 30.0%
TACTGGGATTATAAGTGAAA+TGG + chr8_3:15630340-15630359 Msa1278990:intron 30.0%
ACTGGGATTATAAGTGAAAT+GGG + chr8_3:15630341-15630360 Msa1278990:intron 30.0%
! GCCTTATTATTAAATTGACC+TGG + chr8_3:15630378-15630397 Msa1278990:intron 30.0%
GCCAGGTCAATTTAATAATA+AGG - chr8_3:15630382-15630401 None:intergenic 30.0%
!! TTAAATTTGTTAAATGGGCC+AGG - chr8_3:15630399-15630418 None:intergenic 30.0%
ATTAGGTAAATAGACTAGGT+AGG - chr8_3:15630430-15630449 None:intergenic 30.0%
AATAAATCTTGACCTAGGTT+AGG + chr8_3:15630644-15630663 Msa1278990:intron 30.0%
!!! TTTTTTTTTTTGGGATTGGG+GGG + chr8_3:15630843-15630862 Msa1278990:intron 30.0%
! TTTTTATAGTGAGGCCTTTA+GGG + chr8_3:15630949-15630968 Msa1278990:intron 30.0%
TATGTAATATATAGGCCACT+AGG + chr8_3:15631245-15631264 Msa1278990:intron 30.0%
ATTTAAAGAGTTAGTCCTAG+TGG - chr8_3:15631263-15631282 None:intergenic 30.0%
CTAGGACTAACTCTTTAAAT+AGG + chr8_3:15631263-15631282 Msa1278990:intron 30.0%
GACTATAAGACATTTCAGAT+AGG + chr8_3:15631399-15631418 Msa1278990:intron 30.0%
CATTAAAAACTAAACTCAGC+CGG - chr8_3:15631591-15631610 None:intergenic 30.0%
TCTCTTAGAATGATCTTATG+CGG + chr8_3:15631632-15631651 Msa1278990:intron 30.0%
GATAAATTGTTGTGAATCTG+TGG + chr8_3:15631670-15631689 Msa1278990:intron 30.0%
GGAACCAAAACATAGATTAA+GGG - chr8_3:15632226-15632245 None:intergenic 30.0%
TGGAACCAAAACATAGATTA+AGG - chr8_3:15632227-15632246 None:intergenic 30.0%
!!! TCTATGTTTTGGTTCCAATT+TGG + chr8_3:15632230-15632249 Msa1278990:intron 30.0%
! TCATTTGTCCAAGCTTTAAT+TGG + chr8_3:15632282-15632301 Msa1278990:intron 30.0%
! CATTTGTCCAAGCTTTAATT+GGG + chr8_3:15632283-15632302 Msa1278990:intron 30.0%
TGCTAGTGTTACATAGAAAA+GGG - chr8_3:15632381-15632400 None:intergenic 30.0%
!!! GGTCCCTTATTTTATTTCTT+TGG - chr8_3:15632605-15632624 None:intergenic 30.0%
! TAAATCCTTTTCTTCTGTGT+AGG + chr8_3:15632820-15632839 Msa1278990:intron 30.0%
! TGCTAAAGAGACTTTTTGAA+GGG - chr8_3:15633271-15633290 None:intergenic 30.0%
! ATGCTAAAGAGACTTTTTGA+AGG - chr8_3:15633272-15633291 None:intergenic 30.0%
!!! TCTAATTTTGAGGTGAGAAA+GGG - chr8_3:15633565-15633584 None:intergenic 30.0%
!!! TTCTAATTTTGAGGTGAGAA+AGG - chr8_3:15633566-15633585 None:intergenic 30.0%
CAAAGTAAACAGAGGTAAAA+GGG - chr8_3:15633655-15633674 None:intergenic 30.0%
ACAAAGTAAACAGAGGTAAA+AGG - chr8_3:15633656-15633675 None:intergenic 30.0%
! TGTTTTCACAAAGTAAACAG+AGG - chr8_3:15633663-15633682 None:intergenic 30.0%
TCTGTTTGTATAGGAAATAG+TGG + chr8_3:15633791-15633810 Msa1278990:intron 30.0%
GATCTACTATTCTAACTGAT+TGG - chr8_3:15633909-15633928 None:intergenic 30.0%
CTACTTAAGTTACACATGAT+CGG + chr8_3:15633955-15633974 Msa1278990:intron 30.0%
!!! TGCAAAACCCTAGTTTTATT+TGG + chr8_3:15634039-15634058 Msa1278990:intron 30.0%
TTTGGATAGCTAAATTCGAT+TGG + chr8_3:15634057-15634076 Msa1278990:intron 30.0%
!! TTCTTCTTGTTCTTGGTTTT+TGG - chr8_3:15634126-15634145 None:intergenic 30.0%
ATCTTCATTCTTCTTGTTCT+TGG - chr8_3:15634133-15634152 None:intergenic 30.0%
GCATTAAATCAATGTCCATA+TGG - chr8_3:15634305-15634324 None:intergenic 30.0%
TTATTAGCATACACCAGTAT+TGG + chr8_3:15634342-15634361 Msa1278990:three_prime_UTR 30.0%
TATTAGCATACACCAGTATT+GGG + chr8_3:15634343-15634362 Msa1278990:three_prime_UTR 30.0%
!! TTCATATTTTTGTAGCTGTG+AGG + chr8_3:15634511-15634530 Msa1278990:three_prime_UTR 30.0%
!!! ATTTTGCTTTTTGTGGTTCA+AGG + chr8_3:15634549-15634568 Msa1278990:three_prime_UTR 30.0%
!!! TTTTGCTTTTTGTGGTTCAA+GGG + chr8_3:15634550-15634569 Msa1278990:three_prime_UTR 30.0%
AAAATCGCAAGATTTCCTAA+TGG - chr8_3:15634702-15634721 None:intergenic 30.0%
!! GATGATTTATTTCTGAATCC+AGG + chr8_3:15634765-15634784 Msa1278990:three_prime_UTR 30.0%
! AACAGATTTGAAACAAAACC+CGG - chr8_3:15634802-15634821 None:intergenic 30.0%
! GAATTAAAGAGAGATGATGG+TGG - chr8_3:15627672-15627691 None:intergenic 35.0%
ATGTTCAACGGTTTCATATG+GGG - chr8_3:15627694-15627713 None:intergenic 35.0%
TCATATTCTTCACGAAGATG+TGG - chr8_3:15627742-15627761 None:intergenic 35.0%
TGATTGTGATTGTGATCAAG+TGG - chr8_3:15627766-15627785 None:intergenic 35.0%
GAGAGAATCAAAACTCAAGA+GGG - chr8_3:15627822-15627841 None:intergenic 35.0%
AGAGAGAATCAAAACTCAAG+AGG - chr8_3:15627823-15627842 None:intergenic 35.0%
ACACAAAAAGGCTACAACTT+TGG - chr8_3:15627974-15627993 None:intergenic 35.0%
TTTGTGAGTGTATGCATCAA+AGG + chr8_3:15628103-15628122 Msa1278990:intron 35.0%
TTAGTTGTCTTCTGCATGTT+TGG + chr8_3:15628366-15628385 Msa1278990:intron 35.0%
AAAAGGACCTTAAGACTCAA+AGG - chr8_3:15628396-15628415 None:intergenic 35.0%
GCAAGCAAAGGAAAAAGAAA+AGG - chr8_3:15628413-15628432 None:intergenic 35.0%
ACTTAAACTCATCAACCACT+TGG - chr8_3:15628493-15628512 None:intergenic 35.0%
TCCCTGACTTAAACAATCTT+TGG + chr8_3:15628547-15628566 Msa1278990:intron 35.0%
GCCAAAGATTGTTTAAGTCA+GGG - chr8_3:15628551-15628570 None:intergenic 35.0%
AGCCAAAGATTGTTTAAGTC+AGG - chr8_3:15628552-15628571 None:intergenic 35.0%
CCATATGGTTCTCAGAAAAA+AGG - chr8_3:15628618-15628637 None:intergenic 35.0%
!!! CCTTTTTTCTGAGAACCATA+TGG + chr8_3:15628615-15628634 Msa1278990:intron 35.0%
TGTTGTCAAAGATTGTGAAG+GGG + chr8_3:15628933-15628952 Msa1278990:five_prime_UTR 35.0%
GAATTTAAATGCATGGATCG+AGG + chr8_3:15628959-15628978 Msa1278990:exon 35.0%
ATTTAAATGCATGGATCGAG+GGG + chr8_3:15628961-15628980 Msa1278990:exon 35.0%
CATAAAGTATGATGCAGAAC+CGG - chr8_3:15629005-15629024 None:intergenic 35.0%
GGGAATTATGCAATTCATGT+TGG - chr8_3:15629054-15629073 None:intergenic 35.0%
!! TCGTTTCAATCAAGTATTGG+TGG + chr8_3:15629103-15629122 Msa1278990:CDS 35.0%
!! TTTCAATCAAGTATTGGTGG+TGG + chr8_3:15629106-15629125 Msa1278990:CDS 35.0%
GGATCTCAATGTATCAATGT+AGG + chr8_3:15629172-15629191 Msa1278990:CDS 35.0%
! AAACAACAGTTGGCTTCTTT+CGG + chr8_3:15629379-15629398 Msa1278990:CDS 35.0%
TCATTAAGGGATTAGAATGC+CGG - chr8_3:15629565-15629584 None:intergenic 35.0%
AAAAACATGTCAAGTAACGG+AGG - chr8_3:15629867-15629886 None:intergenic 35.0%
! AAAACATGTCAAGTAACGGA+GGG - chr8_3:15629866-15629885 None:intergenic 35.0%
AAAAACATGTCAAGTAACGG+AGG - chr8_3:15629867-15629886 None:intergenic 35.0%
! CTACTAGGAAACAAGTGTTT+TGG - chr8_3:15630210-15630229 None:intergenic 35.0%
TTTAATAATAAGGCCTAGCC+TGG - chr8_3:15630372-15630391 None:intergenic 35.0%
!! CTTTAAAGAGATAGCTCTAG+TGG - chr8_3:15630482-15630501 None:intergenic 35.0%
TCAAAATTAAGGCCCAAGTT+TGG + chr8_3:15630906-15630925 Msa1278990:intron 35.0%
CAGATAAACAGACCAAACTT+GGG - chr8_3:15630921-15630940 None:intergenic 35.0%
TCAGATAAACAGACCAAACT+TGG - chr8_3:15630922-15630941 None:intergenic 35.0%
AAGTTTGGTCTGTTTATCTG+AGG + chr8_3:15630921-15630940 Msa1278990:intron 35.0%
CTAAAGGCCTCACTATAAAA+AGG - chr8_3:15630950-15630969 None:intergenic 35.0%
! CTTTTTATAGTGAGGCCTTT+AGG + chr8_3:15630948-15630967 Msa1278990:intron 35.0%
TTTGGATTTGTGTGTTTGGA+TGG - chr8_3:15631189-15631208 None:intergenic 35.0%
! AGCTTTTGGATTTGTGTGTT+TGG - chr8_3:15631193-15631212 None:intergenic 35.0%
TCCAAAAGCTTACCTCTTAA+TGG + chr8_3:15631203-15631222 Msa1278990:intron 35.0%
CCAAAAGCTTACCTCTTAAT+GGG + chr8_3:15631204-15631223 Msa1278990:intron 35.0%
CTTGTCCTTATGCATTTCAT+AGG - chr8_3:15631522-15631541 None:intergenic 35.0%
! ACATAGATTAAGGGTGTGTT+TGG - chr8_3:15632217-15632236 None:intergenic 35.0%
! CACACCCTTAATCTATGTTT+TGG + chr8_3:15632219-15632238 Msa1278990:intron 35.0%
! TCCAAGCTTTAATTGGGAAT+TGG + chr8_3:15632289-15632308 Msa1278990:intron 35.0%
! CCAAGCTTTAATTGGGAATT+GGG + chr8_3:15632290-15632309 Msa1278990:intron 35.0%
GCTAGTGTTACATAGAAAAG+GGG - chr8_3:15632380-15632399 None:intergenic 35.0%
TGTAGCCATGTACACATATT+GGG - chr8_3:15632429-15632448 None:intergenic 35.0%
ATGTAGCCATGTACACATAT+TGG - chr8_3:15632430-15632449 None:intergenic 35.0%
CGCTCAAATTGTATTCGAAA+AGG - chr8_3:15632532-15632551 None:intergenic 35.0%
CGAATACAATTTGAGCGAAA+AGG + chr8_3:15632535-15632554 Msa1278990:intron 35.0%
AATGTCCTACACAGAAGAAA+AGG - chr8_3:15632828-15632847 None:intergenic 35.0%
GGACATTGCAACAAAAATTC+TGG + chr8_3:15632841-15632860 Msa1278990:intron 35.0%
!! ATATTTGTTATGTCGGCCAA+TGG + chr8_3:15632890-15632909 Msa1278990:CDS 35.0%
AATCACATAGCAACCCTTTA+TGG + chr8_3:15633100-15633119 Msa1278990:intron 35.0%
CATAACATGGCGATCATATA+AGG - chr8_3:15633219-15633238 None:intergenic 35.0%
!!! TTTTGAGATACTTAGCCTGA+CGG + chr8_3:15633364-15633383 Msa1278990:CDS 35.0%
TTTCAATGCTATCCTAACAG+CGG - chr8_3:15633539-15633558 None:intergenic 35.0%
!!! CTAATTTTGAGGTGAGAAAG+GGG - chr8_3:15633564-15633583 None:intergenic 35.0%
! ATAAAACTAGGGTTTTGCAG+CGG - chr8_3:15634038-15634057 None:intergenic 35.0%
CATGACTATCAGGTGATAAT+CGG + chr8_3:15634081-15634100 Msa1278990:intron 35.0%
ATGACTATCAGGTGATAATC+GGG + chr8_3:15634082-15634101 Msa1278990:intron 35.0%
GATTCAGAAGATCAAGAAGT+TGG + chr8_3:15634150-15634169 Msa1278990:CDS 35.0%
GTAGAGGAAAATCATCATCA+TGG + chr8_3:15634174-15634193 Msa1278990:CDS 35.0%
GAAATGCTATTCATTGCAAC+TGG - chr8_3:15634210-15634229 None:intergenic 35.0%
!! ATGGACATTGATTTAATGCG+TGG + chr8_3:15634306-15634325 Msa1278990:CDS 35.0%
!! TGGACATTGATTTAATGCGT+GGG + chr8_3:15634307-15634326 Msa1278990:CDS 35.0%
! CTATGGTTGATTGACTTTAG+AGG + chr8_3:15634483-15634502 Msa1278990:three_prime_UTR 35.0%
GGGGAATTAAAGAGAGATGA+TGG - chr8_3:15627675-15627694 None:intergenic 40.0%
TATTCTTCACGAAGATGTGG+TGG - chr8_3:15627739-15627758 None:intergenic 40.0%
ACAACAAGGAGCTAGATCAA+TGG - chr8_3:15628341-15628360 None:intergenic 40.0%
! TGGTTTGCCTTTGAGTCTTA+AGG + chr8_3:15628386-15628405 Msa1278990:intron 40.0%
TTGAGTAGAGCATAACCAAG+TGG + chr8_3:15628475-15628494 Msa1278990:intron 40.0%
AAGTTAAGGTCGGATCAATG+AGG + chr8_3:15628509-15628528 Msa1278990:intron 40.0%
! GGTTCTGGTAATCCAAAGTT+CGG - chr8_3:15628595-15628614 None:intergenic 40.0%
TTCTCAGAAAAAAGGGGTTC+TGG - chr8_3:15628610-15628629 None:intergenic 40.0%
! TCTTGTTTGTGCCTGCATAT+TGG + chr8_3:15628791-15628810 Msa1278990:intron 40.0%
TTACATGTCACAGAGATAGG+TGG + chr8_3:15628869-15628888 Msa1278990:intron 40.0%
CAGAGATAGGTGGTAAAGTT+TGG + chr8_3:15628879-15628898 Msa1278990:intron 40.0%
GGGGCTTGAATTTAAATGCA+TGG + chr8_3:15628952-15628971 Msa1278990:exon 40.0%
GCATCATACTTTATGCAGAG+AGG + chr8_3:15629010-15629029 Msa1278990:CDS 40.0%
TTTATGCAGAGAGGATTACC+TGG + chr8_3:15629019-15629038 Msa1278990:CDS 40.0%
CATGAATTGCATAATTCCCC+TGG + chr8_3:15629055-15629074 Msa1278990:CDS 40.0%
TATTCAGCGAACGAATACCA+GGG - chr8_3:15629075-15629094 None:intergenic 40.0%
CCAATTCCAGAAGAATCCAT+CGG - chr8_3:15629154-15629173 None:intergenic 40.0%
!!! AGCCAACTGTTGTTTTTTCC+CGG - chr8_3:15629374-15629393 None:intergenic 40.0%
ATCTTGACCTAGGTTAGGTT+TGG + chr8_3:15630649-15630668 Msa1278990:intron 40.0%
TCTTGACCTAGGTTAGGTTT+GGG + chr8_3:15630650-15630669 Msa1278990:intron 40.0%
TCATGCCTGCATCCAAATTA+GGG - chr8_3:15630717-15630736 None:intergenic 40.0%
ATCATGCCTGCATCCAAATT+AGG - chr8_3:15630718-15630737 None:intergenic 40.0%
TTGGATGCAGGCATGATAAA+TGG + chr8_3:15630721-15630740 Msa1278990:intron 40.0%
! GCAGGCATGATAAATGGTTT+TGG + chr8_3:15630727-15630746 Msa1278990:intron 40.0%
AAAACAGGACAGGTCTATCA+TGG - chr8_3:15630791-15630810 None:intergenic 40.0%
TTTGGTCTGTTTATCTGAGG+TGG + chr8_3:15630924-15630943 Msa1278990:intron 40.0%
TCAATCCAAACACACCCTAA+AGG - chr8_3:15630966-15630985 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG + chr8_3:15630965-15630984 Msa1278990:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr8_3:15630966-15630985 Msa1278990:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr8_3:15630972-15630991 Msa1278990:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr8_3:15630976-15630995 Msa1278990:intron 40.0%
ATTTGTGTGTTTGGATGGAG+GGG - chr8_3:15631184-15631203 None:intergenic 40.0%
GATTTGTGTGTTTGGATGGA+GGG - chr8_3:15631185-15631204 None:intergenic 40.0%
! CCCATTAAGAGGTAAGCTTT+TGG - chr8_3:15631207-15631226 None:intergenic 40.0%
TTACCTCTTAATGGGATGAC+AGG + chr8_3:15631212-15631231 Msa1278990:intron 40.0%
TGCCTCCTATGAAATGCATA+AGG + chr8_3:15631514-15631533 Msa1278990:intron 40.0%
GTCCTTATGCATTTCATAGG+AGG - chr8_3:15631519-15631538 None:intergenic 40.0%
TTCTCAAGAACGTAGAGTTG+AGG - chr8_3:15631562-15631581 None:intergenic 40.0%
!!! TGTTTTGAGTTGTTGTTGGC+AGG + chr8_3:15631797-15631816 Msa1278990:intron 40.0%
! ATCTCTAGTTCAGCTGGAAA+TGG + chr8_3:15631827-15631846 Msa1278990:CDS 40.0%
ATTGCAATGGAGATGACATG+AGG - chr8_3:15631860-15631879 None:intergenic 40.0%
CATGTCATCTCCATTGCAAT+TGG + chr8_3:15631860-15631879 Msa1278990:CDS 40.0%
GCATACTTCTCCAATTGCAA+TGG - chr8_3:15631873-15631892 None:intergenic 40.0%
!! TAGTACCTTTAGGGTGTGTT+TGG + chr8_3:15631973-15631992 Msa1278990:intron 40.0%
TCAATCCAAACACACCCTAA+AGG - chr8_3:15630966-15630985 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG + chr8_3:15630965-15630984 Msa1278990:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr8_3:15630966-15630985 Msa1278990:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr8_3:15630972-15630991 Msa1278990:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr8_3:15630976-15630995 Msa1278990:intron 40.0%
! AGATTAAGGGTGTGTTTGGA+TGG - chr8_3:15632213-15632232 None:intergenic 40.0%
CCCAATTCCCAATTAAAGCT+TGG - chr8_3:15632293-15632312 None:intergenic 40.0%
!!! TCGGATTTTTGGTTTCAACG+TGG - chr8_3:15632562-15632581 None:intergenic 40.0%
! AATTCTGGCATTTTCTCAGC+AGG + chr8_3:15632856-15632875 Msa1278990:CDS 40.0%
! ATTCTGGCATTTTCTCAGCA+GGG + chr8_3:15632857-15632876 Msa1278990:CDS 40.0%
GTTCTGTCACATATGAGGTT+TGG + chr8_3:15632957-15632976 Msa1278990:intron 40.0%
! TTGTGGTCTTTTGCCTCAAT+AGG + chr8_3:15633337-15633356 Msa1278990:intron 40.0%
! TGTGGTCTTTTGCCTCAATA+GGG + chr8_3:15633338-15633357 Msa1278990:intron 40.0%
! TTTGAGATACTTAGCCTGAC+GGG + chr8_3:15633365-15633384 Msa1278990:CDS 40.0%
! TACTTGGTTGCTGATAACGA+TGG + chr8_3:15633392-15633411 Msa1278990:CDS 40.0%
AGAATAGCAGTTACCTGAAC+AGG - chr8_3:15633515-15633534 None:intergenic 40.0%
! TTCGATTGGTCATGACTATC+AGG + chr8_3:15634071-15634090 Msa1278990:intron 40.0%
! TGATAATCGGGAGCTTTATG+TGG + chr8_3:15634094-15634113 Msa1278990:CDS 40.0%
! GATAATCGGGAGCTTTATGT+GGG + chr8_3:15634095-15634114 Msa1278990:CDS 40.0%
! ATAATCGGGAGCTTTATGTG+GGG + chr8_3:15634096-15634115 Msa1278990:CDS 40.0%
!! AGATCAAGAAGTTGGTGTAG+AGG + chr8_3:15634158-15634177 Msa1278990:CDS 40.0%
GTTGGAGTCAGACTTTGATT+TGG - chr8_3:15634234-15634253 None:intergenic 40.0%
CTCCAACATCTCTCAATTCT+TGG + chr8_3:15634247-15634266 Msa1278990:CDS 40.0%
TGGGAATTACGCATATCCAA+TGG - chr8_3:15634285-15634304 None:intergenic 40.0%
GGATATGCGTAATTCCCATA+TGG + chr8_3:15634287-15634306 Msa1278990:CDS 40.0%
ATCAACGAGATTAGCAGAAG+TGG + chr8_3:15634608-15634627 Msa1278990:three_prime_UTR 40.0%
! TTTGAAACAAAACCCGGTCT+AGG - chr8_3:15634796-15634815 None:intergenic 40.0%
AAGACCAGCTGAACTGTAAC+AGG - chr8_3:15628210-15628229 None:intergenic 45.0%
GCTAGACTTTGCTTACCTTC+TGG + chr8_3:15628569-15628588 Msa1278990:intron 45.0%
TAATCCAAAGTTCGGCCAGA+AGG - chr8_3:15628587-15628606 None:intergenic 45.0%
!! TCATGTTGGTTTCCAGAACC+AGG - chr8_3:15629040-15629059 None:intergenic 45.0%
ATTCAGCGAACGAATACCAG+GGG - chr8_3:15629074-15629093 None:intergenic 45.0%
GTATTCAGCGAACGAATACC+AGG - chr8_3:15629076-15629095 None:intergenic 45.0%
!! CAATCAAGTATTGGTGGTGG+TGG + chr8_3:15629109-15629128 Msa1278990:CDS 45.0%
!! ATTGGTGGTGGTGGTACTAT+TGG + chr8_3:15629118-15629137 Msa1278990:CDS 45.0%
!! CCGATGGATTCTTCTGGAAT+TGG + chr8_3:15629151-15629170 Msa1278990:CDS 45.0%
ATCAATGTAGGTGCTCCTTC+TGG + chr8_3:15629184-15629203 Msa1278990:CDS 45.0%
TCAATGTAGGTGCTCCTTCT+GGG + chr8_3:15629185-15629204 Msa1278990:CDS 45.0%
CGTGGAAGGCCTAGAAAATA+CGG + chr8_3:15629244-15629263 Msa1278990:CDS 45.0%
! CCATCAGCTCCGTATTTTCT+AGG - chr8_3:15629256-15629275 None:intergenic 45.0%
CCTAGAAAATACGGAGCTGA+TGG + chr8_3:15629253-15629272 Msa1278990:CDS 45.0%
GTCCGGGAAAAAACAACAGT+TGG + chr8_3:15629369-15629388 Msa1278990:CDS 45.0%
GGTCGAGCTTTCAAAAGTCT+TGG + chr8_3:15629682-15629701 Msa1278990:intron 45.0%
AATAGGTCAAGAGGCCTCTT+CGG - chr8_3:15630689-15630708 None:intergenic 45.0%
ACCTATTCGCACCCCTAATT+TGG + chr8_3:15630702-15630721 Msa1278990:intron 45.0%
! TCCAAATTAGGGGTGCGAAT+AGG - chr8_3:15630706-15630725 None:intergenic 45.0%
CATGCCTGCATCCAAATTAG+GGG - chr8_3:15630716-15630735 None:intergenic 45.0%
!!! TTTTTGGGATTGGGGGGAAA+TGG + chr8_3:15630849-15630868 Msa1278990:intron 45.0%
!!! TTTTGGGATTGGGGGGAAAT+GGG + chr8_3:15630850-15630869 Msa1278990:intron 45.0%
! GAAATGGGCTTTGCTAAGCT+AGG + chr8_3:15630865-15630884 Msa1278990:intron 45.0%
! GAGGTGGCCTTTTTATAGTG+AGG + chr8_3:15630940-15630959 Msa1278990:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr8_3:15630975-15630994 Msa1278990:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr8_3:15630977-15630996 Msa1278990:intron 45.0%
GGATTTGTGTGTTTGGATGG+AGG - chr8_3:15631186-15631205 None:intergenic 45.0%
ACGTTCTTGAGAAACGTGAC+CGG + chr8_3:15631569-15631588 Msa1278990:intron 45.0%
TATGCGGCAAGTAGCAAAGA+TGG + chr8_3:15631648-15631667 Msa1278990:intron 45.0%
!! TTTGAGTTGTTGTTGGCAGG+TGG + chr8_3:15631800-15631819 Msa1278990:intron 45.0%
! GGTTTGATCTCTAGTTCAGC+TGG + chr8_3:15631821-15631840 Msa1278990:CDS 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr8_3:15630975-15630994 Msa1278990:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr8_3:15630977-15630996 Msa1278990:intron 45.0%
TGTGTTTGGATGGAGGGTTT+AGG - chr8_3:15632203-15632222 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+GGG - chr8_3:15632209-15632228 None:intergenic 45.0%
! TTAAGGGTGTGTTTGGATGG+AGG - chr8_3:15632210-15632229 None:intergenic 45.0%
CATAGAAAAGGGGTCCAGAT+AGG - chr8_3:15632370-15632389 None:intergenic 45.0%
CATGTACACATATTGGGCAC+TGG - chr8_3:15632423-15632442 None:intergenic 45.0%
CAGTGCCCAATATGTGTACA+TGG + chr8_3:15632421-15632440 Msa1278990:intron 45.0%
CTCTACTGTGACACTTTGTC+AGG + chr8_3:15632919-15632938 Msa1278990:CDS 45.0%
TTTGTCAGGCTTCGACATCT+GGG + chr8_3:15632933-15632952 Msa1278990:CDS 45.0%
! GTGGTCTTTTGCCTCAATAG+GGG + chr8_3:15633339-15633358 Msa1278990:intron 45.0%
ATCTCAAAACGCCCCTATTG+AGG - chr8_3:15633353-15633372 None:intergenic 45.0%
ACTGCTATTCTACCGCTGTT+AGG + chr8_3:15633524-15633543 Msa1278990:intron 45.0%
GGCCAAGAATTGAGAGATGT+TGG - chr8_3:15634252-15634271 None:intergenic 45.0%
AGTGGCTAATCTTCGACATG+TGG + chr8_3:15634626-15634645 Msa1278990:three_prime_UTR 45.0%
TCTTCGACATGTGGTGACTT+AGG + chr8_3:15634635-15634654 Msa1278990:three_prime_UTR 45.0%
CTTCGACATGTGGTGACTTA+GGG + chr8_3:15634636-15634655 Msa1278990:three_prime_UTR 45.0%
GACTTAGGGCTTGAAGTTCT+TGG + chr8_3:15634650-15634669 Msa1278990:three_prime_UTR 45.0%
AATCCAGGGAAAACCTAGAC+CGG + chr8_3:15634780-15634799 Msa1278990:three_prime_UTR 45.0%
TGGACCTGTTACAGTTCAGC+TGG + chr8_3:15628203-15628222 Msa1278990:intron 50.0%
CTTACCTTCTGGCCGAACTT+TGG + chr8_3:15628580-15628599 Msa1278990:intron 50.0%
GACCAAATGGCGGCATTATC+CGG + chr8_3:15628983-15629002 Msa1278990:CDS 50.0%
AACCGGATAATGCCGCCATT+TGG - chr8_3:15628988-15629007 None:intergenic 50.0%
CAGAGAGGATTACCTGGTTC+TGG + chr8_3:15629025-15629044 Msa1278990:CDS 50.0%
TATTGGATCCACGATGCCGA+TGG + chr8_3:15629135-15629154 Msa1278990:CDS 50.0%
AGAAGAATCCATCGGCATCG+TGG - chr8_3:15629146-15629165 None:intergenic 50.0%
! ACGATGCCGATGGATTCTTC+TGG + chr8_3:15629145-15629164 Msa1278990:CDS 50.0%
CAATGTAGGTGCTCCTTCTG+GGG + chr8_3:15629186-15629205 Msa1278990:CDS 50.0%
AATGTAGGTGCTCCTTCTGG+GGG + chr8_3:15629187-15629206 Msa1278990:CDS 50.0%
ACTGCTTCAACTGGTGAACC+TGG + chr8_3:15629211-15629230 Msa1278990:CDS 50.0%
CAACTGGTGAACCTGGCAAA+AGG + chr8_3:15629218-15629237 Msa1278990:CDS 50.0%
! GCGTTTCTGGACTTGTGGTA+CGG - chr8_3:15629329-15629348 None:intergenic 50.0%
GTACCACAAGTCCAGAAACG+CGG + chr8_3:15629328-15629347 Msa1278990:CDS 50.0%
!!! TGTTGTTTTTTCCCGGACCC+TGG - chr8_3:15629367-15629386 None:intergenic 50.0%
!! AGATGGGCTGTGCACAAAAG+TGG + chr8_3:15629661-15629680 Msa1278990:intron 50.0%
TAAGTGAAATGGGCCAGTCC+AGG + chr8_3:15630351-15630370 Msa1278990:intron 50.0%
TAATAAGGCCTAGCCTGGAC+TGG - chr8_3:15630367-15630386 None:intergenic 50.0%
ATAGGTCAAGAGGCCTCTTC+GGG - chr8_3:15630688-15630707 None:intergenic 50.0%
!! TGAGGCCTTTAGGGTGTGTT+TGG + chr8_3:15630958-15630977 Msa1278990:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG + chr8_3:15630981-15631000 Msa1278990:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG + chr8_3:15630982-15631001 Msa1278990:intron 50.0%
TTTGGATGGAGGGGAATGGA+GGG - chr8_3:15631175-15631194 None:intergenic 50.0%
TGTGTTTGGATGGAGGGGAA+TGG - chr8_3:15631179-15631198 None:intergenic 50.0%
AGGCCTGTCATCCCATTAAG+AGG - chr8_3:15631218-15631237 None:intergenic 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG + chr8_3:15630981-15631000 Msa1278990:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG + chr8_3:15630982-15631001 Msa1278990:intron 50.0%
GTTTGGATGGAGGGTTTAGG+AGG - chr8_3:15632200-15632219 None:intergenic 50.0%
CACAGTAGAGACAGCACCAT+TGG - chr8_3:15632909-15632928 None:intergenic 50.0%
CTTTGTCAGGCTTCGACATC+TGG + chr8_3:15632932-15632951 Msa1278990:CDS 50.0%
TTGTCAGGCTTCGACATCTG+GGG + chr8_3:15632934-15632953 Msa1278990:CDS 50.0%
TGGGGGTTCTGTCACATATG+AGG + chr8_3:15632952-15632971 Msa1278990:CDS 50.0%
GTTTCTCTTGCCAGTCCTGA+TGG + chr8_3:15633443-15633462 Msa1278990:CDS 50.0%
CATTGCTGCAAGTCCTGTTC+AGG + chr8_3:15633499-15633518 Msa1278990:CDS 50.0%
ATATCCAATGGACGCGATGC+AGG - chr8_3:15634273-15634292 None:intergenic 50.0%
AGGGCTTGAAGTTCTTGGAG+AGG + chr8_3:15634655-15634674 Msa1278990:three_prime_UTR 50.0%
ATCCAGGGAAAACCTAGACC+GGG + chr8_3:15634781-15634800 Msa1278990:three_prime_UTR 50.0%
! TGGTGGTGTGACTGTGAGAG+TGG + chr8_3:15628183-15628202 Msa1278990:intron 55.0%
CATGGATCGAGGGGACCAAA+TGG + chr8_3:15628970-15628989 Msa1278990:exon 55.0%
GTTGAAGCAGTTCCCCCAGA+AGG - chr8_3:15629202-15629221 None:intergenic 55.0%
TCTGGGGGAACTGCTTCAAC+TGG + chr8_3:15629202-15629221 Msa1278990:CDS 55.0%
GAACCTGGCAAAAGGAAGCG+TGG + chr8_3:15629226-15629245 Msa1278990:CDS 55.0%
! CTTCCACGCTTCCTTTTGCC+AGG - chr8_3:15629232-15629251 None:intergenic 55.0%
! CTGGCAAAAGGAAGCGTGGA+AGG + chr8_3:15629230-15629249 Msa1278990:CDS 55.0%
!! GGATGGCTTGCTGGTGTTGT+TGG - chr8_3:15629301-15629320 None:intergenic 55.0%
ACAACACCAGCAAGCCATCC+TGG + chr8_3:15629301-15629320 Msa1278990:CDS 55.0%
CTTGTGGTACGGTTCCAGGA+TGG - chr8_3:15629318-15629337 None:intergenic 55.0%
TGGACTTGTGGTACGGTTCC+AGG - chr8_3:15629322-15629341 None:intergenic 55.0%
AAGTCCAGAAACGCGGTCGA+GGG + chr8_3:15629335-15629354 Msa1278990:CDS 55.0%
!!! GTTTTTTCCCGGACCCTGGA+GGG - chr8_3:15629363-15629382 None:intergenic 55.0%
!!! TGTTTTTTCCCGGACCCTGG+AGG - chr8_3:15629364-15629383 None:intergenic 55.0%
AGAGGCCTCTTCGGGCTTAT+AGG - chr8_3:15630680-15630699 None:intergenic 55.0%
! AGGGGTGCGAATAGGTCAAG+AGG - chr8_3:15630698-15630717 None:intergenic 55.0%
CGCACCCCTAATTTGGATGC+AGG + chr8_3:15630709-15630728 Msa1278990:intron 55.0%
TTGGATGGAGGGGAATGGAG+GGG - chr8_3:15631174-15631193 None:intergenic 55.0%
GTTTGGATGGAGGGGAATGG+AGG - chr8_3:15631176-15631195 None:intergenic 55.0%
TGGAGGGTTTAGGAGGCGAA+GGG - chr8_3:15632193-15632212 None:intergenic 55.0%
ATGGAGGGTTTAGGAGGCGA+AGG - chr8_3:15632194-15632213 None:intergenic 55.0%
TGTCAGGCTTCGACATCTGG+GGG + chr8_3:15632935-15632954 Msa1278990:CDS 55.0%
!! TAGCCTGACGGGCTCTTACT+TGG + chr8_3:15633376-15633395 Msa1278990:CDS 55.0%
CAACCAAGTAAGAGCCCGTC+AGG - chr8_3:15633382-15633401 None:intergenic 55.0%
CGATGGCTCGCGTAATCGAA+CGG + chr8_3:15633409-15633428 Msa1278990:CDS 55.0%
GATGGCTCGCGTAATCGAAC+GGG + chr8_3:15633410-15633429 Msa1278990:CDS 55.0%
AATGACACGGCCATCAGGAC+TGG - chr8_3:15633456-15633475 None:intergenic 55.0%
AGTCCTGATGGCCGTGTCAT+TGG + chr8_3:15633455-15633474 Msa1278990:CDS 55.0%
! ATCGGGAGCTTTATGTGGGG+TGG + chr8_3:15634099-15634118 Msa1278990:CDS 55.0%
! AACCCGGTCTAGGTTTTCCC+TGG - chr8_3:15634786-15634805 None:intergenic 55.0%
GGATCGAGGGGACCAAATGG+CGG + chr8_3:15628973-15628992 Msa1278990:CDS 60.0%
! ACGGTTCCAGGATGGCTTGC+TGG - chr8_3:15629310-15629329 None:intergenic 60.0%
! CGACCGCGTTTCTGGACTTG+TGG - chr8_3:15629334-15629353 None:intergenic 60.0%
CAAGTCCAGAAACGCGGTCG+AGG + chr8_3:15629334-15629353 Msa1278990:CDS 60.0%
GAAATGGGCCAGTCCAGGCT+AGG + chr8_3:15630356-15630375 Msa1278990:intron 60.0%
! GGCTGGCCCAAACCTAACCT+AGG - chr8_3:15630659-15630678 None:intergenic 60.0%
GCCAGCCTATAAGCCCGAAG+AGG + chr8_3:15630672-15630691 Msa1278990:intron 60.0%
GCCTCTTCGGGCTTATAGGC+TGG - chr8_3:15630676-15630695 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr8_3:15630985-15631004 Msa1278990:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr8_3:15630986-15631005 Msa1278990:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr8_3:15630987-15631006 Msa1278990:intron 60.0%
ATGGAGGGGAATGGAGGGGA+GGG - chr8_3:15631170-15631189 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr8_3:15630985-15631004 Msa1278990:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr8_3:15630986-15631005 Msa1278990:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr8_3:15630987-15631006 Msa1278990:intron 60.0%
GGTTTAGGAGGCGAAGGGAG+GGG - chr8_3:15632188-15632207 None:intergenic 60.0%
GGGTTTAGGAGGCGAAGGGA+GGG - chr8_3:15632189-15632208 None:intergenic 60.0%
AGGGTTTAGGAGGCGAAGGG+AGG - chr8_3:15632190-15632209 None:intergenic 60.0%
CCACCAATGACACGGCCATC+AGG - chr8_3:15633461-15633480 None:intergenic 60.0%
! CCTGATGGCCGTGTCATTGG+TGG + chr8_3:15633458-15633477 Msa1278990:CDS 60.0%
! GATGGCCGTGTCATTGGTGG+AGG + chr8_3:15633461-15633480 Msa1278990:CDS 60.0%
CGACGCCTCCACCAATGACA+CGG - chr8_3:15633469-15633488 None:intergenic 60.0%
! CGTGTCATTGGTGGAGGCGT+CGG + chr8_3:15633467-15633486 Msa1278990:CDS 60.0%
TTGGCCTGCATCGCGTCCAT+TGG + chr8_3:15634266-15634285 Msa1278990:CDS 60.0%
! CAAGGGTATGTCGCGACTCG+TGG + chr8_3:15634567-15634586 Msa1278990:three_prime_UTR 60.0%
TAGGAGGGGAAGGGAGGGGA+AGG + chr8_3:15630991-15631010 Msa1278990:intron 65.0%
GATGGAGGGGAATGGAGGGG+AGG - chr8_3:15631171-15631190 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr8_3:15630990-15631009 Msa1278990:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr8_3:15630991-15631010 Msa1278990:intron 65.0%
TAGGAGGCGAAGGGAGGGGA+GGG - chr8_3:15632184-15632203 None:intergenic 65.0%
TTAGGAGGCGAAGGGAGGGG+AGG - chr8_3:15632185-15632204 None:intergenic 65.0%
!! GTCATTGGTGGAGGCGTCGG+TGG + chr8_3:15633470-15633489 Msa1278990:CDS 65.0%
GGCGCCCTCGACCGCGTTTC+TGG - chr8_3:15629342-15629361 None:intergenic 75.0%
!!! GCGGTCGAGGGCGCCCTCCA+GGG + chr8_3:15629347-15629366 Msa1278990:CDS 80.0%
!!! CGAGGGCGCCCTCCAGGGTC+CGG + chr8_3:15629352-15629371 Msa1278990:CDS 80.0%
!!! GAGGGCGCCCTCCAGGGTCC+GGG + chr8_3:15629353-15629372 Msa1278990:CDS 80.0%
!!! CGCGGTCGAGGGCGCCCTCC+AGG + chr8_3:15629346-15629365 Msa1278990:CDS 85.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 15627401 15634839 15627401 ID=Msa1278990;Name=Msa1278990
chr8_3 mRNA 15627401 15634839 15627401 ID=Msa1278990-mRNA-1;Parent=Msa1278990;Name=Msa1278990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=527|1|1|1|0.66|0.57|7|507|343
chr8_3 exon 15627401 15627782 15627401 ID=Msa1278990-mRNA-1:exon:6036;Parent=Msa1278990-mRNA-1
chr8_3 exon 15627803 15627858 15627803 ID=Msa1278990-mRNA-1:exon:6037;Parent=Msa1278990-mRNA-1
chr8_3 exon 15628882 15629400 15628882 ID=Msa1278990-mRNA-1:exon:6038;Parent=Msa1278990-mRNA-1
chr8_3 exon 15631819 15631886 15631819 ID=Msa1278990-mRNA-1:exon:6039;Parent=Msa1278990-mRNA-1
chr8_3 exon 15632842 15632973 15632842 ID=Msa1278990-mRNA-1:exon:6040;Parent=Msa1278990-mRNA-1
chr8_3 exon 15633359 15633520 15633359 ID=Msa1278990-mRNA-1:exon:6041;Parent=Msa1278990-mRNA-1
chr8_3 exon 15634093 15634839 15634093 ID=Msa1278990-mRNA-1:exon:6042;Parent=Msa1278990-mRNA-1
chr8_3 five_prime_UTR 15627401 15627782 15627401 ID=Msa1278990-mRNA-1:five_prime_utr;Parent=Msa1278990-mRNA-1
chr8_3 five_prime_UTR 15627803 15627858 15627803 ID=Msa1278990-mRNA-1:five_prime_utr;Parent=Msa1278990-mRNA-1
chr8_3 five_prime_UTR 15628882 15628970 15628882 ID=Msa1278990-mRNA-1:five_prime_utr;Parent=Msa1278990-mRNA-1
chr8_3 CDS 15628971 15629400 15628971 ID=Msa1278990-mRNA-1:cds;Parent=Msa1278990-mRNA-1
chr8_3 CDS 15631819 15631886 15631819 ID=Msa1278990-mRNA-1:cds;Parent=Msa1278990-mRNA-1
chr8_3 CDS 15632842 15632973 15632842 ID=Msa1278990-mRNA-1:cds;Parent=Msa1278990-mRNA-1
chr8_3 CDS 15633359 15633520 15633359 ID=Msa1278990-mRNA-1:cds;Parent=Msa1278990-mRNA-1
chr8_3 CDS 15634093 15634332 15634093 ID=Msa1278990-mRNA-1:cds;Parent=Msa1278990-mRNA-1
chr8_3 three_prime_UTR 15634333 15634839 15634333 ID=Msa1278990-mRNA-1:three_prime_utr;Parent=Msa1278990-mRNA-1
Gene Sequence

>Msa1278990

ATGGATCGAGGGGACCAAATGGCGGCATTATCCGGTTCTGCATCATACTTTATGCAGAGAGGATTACCTGGTTCTGGAAACCAACATGAATTGCATAATTCCCCTGGTATTCGTTCGCTGAATACCAATTCATCGTTTCAATCAAGTATTGGTGGTGGTGGTACTATTGGATCCACGATGCCGATGGATTCTTCTGGAATTGGATCTCAATGTATCAATGTAGGTGCTCCTTCTGGGGGAACTGCTTCAACTGGTGAACCTGGCAAAAGGAAGCGTGGAAGGCCTAGAAAATACGGAGCTGATGGAAGTGTGTCGTTAGCATTGACTCCAACAACACCAGCAAGCCATCCTGGAACCGTACCACAAGTCCAGAAACGCGGTCGAGGGCGCCCTCCAGGGTCCGGGAAAAAACAACAGTTGGCTTCTTTCGGTGGTTTGATCTCTAGTTCAGCTGGAAATGGTTTCACTCCTCATGTCATCTCCATTGCAATTGGAGAAGACATTGCAACAAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAACTATATTTGTTATGTCGGCCAATGGTGCTGTCTCTACTGTGACACTTTGTCAGGCTTCGACATCTGGGGGTTCTGTCACATATGAGGGGCGTTTTGAGATACTTAGCCTGACGGGCTCTTACTTGGTTGCTGATAACGATGGCTCGCGTAATCGAACGGGTTCATTAAGTGTTTCTCTTGCCAGTCCTGATGGCCGTGTCATTGGTGGAGGCGTCGGTGGATTGCTCATTGCTGCAAGTCCTGTTCAGGTGATAATCGGGAGCTTTATGTGGGGTGGACCAAAAACCAAGAACAAGAAGAATGAAGATTCAGAAGATCAAGAAGTTGGTGTAGAGGAAAATCATCATCATGGAGTTCATAATCCAGTTGCAATGAATAGCATTTCACCAAATCAAAGTCTGACTCCAACATCTCTCAATTCTTGGCCTGCATCGCGTCCATTGGATATGCGTAATTCCCATATGGACATTGATTTAATGCGTGGGTGA
Protein sequence

>Msa1278990

MDRGDQMAALSGSASYFMQRGLPGSGNQHELHNSPGIRSLNTNSSFQSSIGGGGTIGSTMPMDSSGIGSQCINVGAPSGGTASTGEPGKRKRGRPRKYGADGSVSLALTPTTPASHPGTVPQVQKRGRGRPPGSGKKQQLASFGGLISSSAGNGFTPHVISIAIGEDIATKILAFSQQGPRTIFVMSANGAVSTVTLCQASTSGGSVTYEGRFEILSLTGSYLVADNDGSRNRTGSLSVSLASPDGRVIGGGVGGLLIAASPVQVIIGSFMWGGPKTKNKKNEDSEDQEVGVEENHHHGVHNPVAMNSISPNQSLTPTSLNSWPASRPLDMRNSHMDIDLMRG*