AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127440 MtrunA17_Chr1g0191301 99.710 345 1 0 1 345 1 345 0.0 711
Msa0127440 MtrunA17_Chr1g0196311 72.174 345 94 2 1 344 17 360 0.0 528
Msa0127440 MtrunA17_Chr7g0259161 70.655 351 95 6 1 344 1 350 0.0 511
Msa0127440 MtrunA17_Chr6g0477251 40.413 339 195 2 6 341 554 888 2.24e-79 259
Msa0127440 MtrunA17_Chr6g0477251 38.757 338 200 2 7 341 1 334 2.03e-73 243
Msa0127440 MtrunA17_Chr6g0477161 39.053 338 198 3 8 341 351 684 2.61e-76 248
Msa0127440 MtrunA17_Chr6g0477161 39.763 337 196 2 9 342 4 336 2.99e-76 248
Msa0127440 MtrunA17_Chr6g0477231 35.522 335 213 1 10 341 2 336 5.30e-75 234
Msa0127440 MtrunA17_Chr6g0477271 38.065 310 176 4 36 340 53 351 7.37e-66 212
Msa0127440 MtrunA17_Chr6g0477241 30.321 343 182 5 5 341 7 298 1.34e-48 165
Msa0127440 MtrunA17_Chr4g0025291 35.417 288 157 6 67 340 43 315 2.15e-46 160
Msa0127440 MtrunA17_Chr7g0214851 32.468 308 170 7 61 341 54 350 2.43e-42 150
Msa0127440 MtrunA17_Chr1g0210121 31.310 313 175 8 53 343 51 345 9.70e-39 140
Msa0127440 MtrunA17_Chr7g0268091 30.690 290 167 7 67 342 45 314 2.07e-37 136
Msa0127440 MtrunA17_Chr8g0351211 29.878 328 190 9 38 345 14 321 4.55e-37 135
Msa0127440 MtrunA17_Chr3g0133701 29.373 303 169 7 53 344 32 300 1.35e-36 134
Msa0127440 MtrunA17_Chr1g0204211 33.223 301 175 9 32 322 37 321 9.59e-36 132
Msa0127440 MtrunA17_Chr1g0149271 32.117 274 161 6 38 305 16 270 1.76e-35 131
Msa0127440 MtrunA17_Chr8g0351201 30.887 327 180 10 37 342 25 326 1.99e-35 131
Msa0127440 MtrunA17_Chr7g0235741 31.046 306 182 8 53 345 65 354 9.26e-35 130
Msa0127440 MtrunA17_Chr6g0474541 33.884 242 134 7 32 264 47 271 1.90e-34 129
Msa0127440 MtrunA17_Chr6g0474411 30.065 306 177 9 32 320 22 307 6.46e-34 127
Msa0127440 MtrunA17_Chr1g0204201 32.624 282 162 8 38 305 24 291 1.52e-33 126
Msa0127440 MtrunA17_Chr8g0351171 31.613 310 178 10 25 321 8 296 2.41e-33 125
Msa0127440 MtrunA17_Chr4g0045181 30.132 302 182 8 53 341 33 318 1.34e-32 124
Msa0127440 MtrunA17_Chr3g0081521 32.627 236 148 3 97 322 80 314 1.70e-32 124
Msa0127440 MtrunA17_Chr6g0474471 30.363 303 185 9 31 319 15 305 4.48e-32 122
Msa0127440 MtrunA17_Chr6g0474631 33.032 221 126 5 53 264 38 245 1.00e-31 121
Msa0127440 MtrunA17_Chr6g0458881 31.660 259 136 4 105 323 160 417 1.37e-30 120
Msa0127440 MtrunA17_Chr6g0474491 30.769 234 143 6 37 263 23 244 5.73e-30 116
Msa0127440 MtrunA17_Chr4g0045131 28.146 302 183 11 53 340 73 354 1.73e-29 116
Msa0127440 MtrunA17_Chr7g0228721 30.712 267 136 5 105 323 165 430 2.78e-29 117
Msa0127440 MtrunA17_Chr3g0095711 27.832 309 181 9 54 340 80 368 1.54e-28 114
Msa0127440 MtrunA17_Chr4g0045121 30.303 264 153 9 53 305 36 279 1.60e-27 110
Msa0127440 MtrunA17_Chr4g0045191 28.617 311 172 11 38 339 31 300 2.42e-27 109
Msa0127440 MtrunA17_Chr1g0205871 29.293 297 168 9 38 314 21 295 2.01e-26 107
Msa0127440 MtrunA17_Chr5g0394251 27.437 277 172 7 54 315 40 302 2.79e-26 107
Msa0127440 MtrunA17_Chr5g0394241 26.073 303 182 9 23 307 12 290 7.61e-25 102
Msa0127440 MtrunA17_Chr8g0353951 26.230 305 190 9 54 341 43 329 2.18e-24 101
Msa0127440 MtrunA17_Chr7g0233871 31.343 268 149 8 65 315 48 297 2.32e-24 101
Msa0127440 MtrunA17_Chr1g0205781 31.707 287 150 11 38 305 25 284 1.07e-23 99.8
Msa0127440 MtrunA17_Chr5g0394211 26.780 295 177 9 38 314 56 329 1.72e-23 99.8
Msa0127440 MtrunA17_Chr1g0205791 31.641 256 137 8 65 305 46 278 6.10e-23 97.8
Msa0127440 MtrunA17_Chr6g0474611 37.079 89 49 1 183 264 3 91 1.14e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127440 AT5G27320.1 76.744 344 79 1 1 344 1 343 0.0 567
Msa0127440 AT3G05120.1 75.072 345 85 1 1 344 1 345 0.0 555
Msa0127440 AT3G63010.1 69.477 344 102 3 1 342 1 343 0.0 509
Msa0127440 AT5G23530.1 36.390 349 192 7 1 341 1 327 1.57e-68 218
Msa0127440 AT5G62180.1 33.449 287 172 7 32 308 15 292 6.64e-42 149
Msa0127440 AT1G68620.1 35.433 254 143 5 62 308 57 296 3.82e-41 147
Msa0127440 AT5G06570.3 33.651 315 170 8 47 342 48 342 5.03e-40 144
Msa0127440 AT5G06570.4 33.651 315 170 8 47 342 48 342 5.03e-40 144
Msa0127440 AT5G06570.1 33.651 315 170 8 47 342 33 327 5.04e-40 144
Msa0127440 AT5G06570.2 33.651 315 170 8 47 342 33 327 5.04e-40 144
Msa0127440 AT5G16080.1 32.000 300 166 8 53 336 53 330 6.19e-38 139
Msa0127440 AT1G47480.1 30.070 286 175 6 33 314 16 280 3.29e-35 130
Msa0127440 AT2G45610.1 32.095 296 171 9 32 312 16 296 1.30e-34 129
Msa0127440 AT2G45600.1 33.585 265 144 7 65 312 39 288 3.59e-34 128
Msa0127440 AT2G03550.1 31.230 317 180 10 39 341 19 311 5.26e-34 127
Msa0127440 AT1G19190.1 32.039 309 172 11 53 344 30 317 6.90e-34 127
Msa0127440 AT3G48700.1 33.231 325 163 13 50 343 27 328 2.61e-33 126
Msa0127440 AT5G14310.1 31.439 264 135 4 105 323 151 413 5.08e-33 127
Msa0127440 AT3G48690.1 32.234 273 151 7 50 305 27 282 8.68e-33 124
Msa0127440 AT3G27320.2 33.080 263 131 5 105 323 134 395 4.74e-31 122
Msa0127440 AT3G27320.1 33.080 263 131 5 105 323 166 427 6.58e-31 122
Msa0127440 AT1G49650.1 30.798 263 158 7 53 305 86 334 7.23e-29 115
Msa0127440 AT1G49640.1 29.020 255 165 5 54 304 32 274 2.35e-26 107
Msa0127440 AT1G49660.1 30.038 263 157 6 53 303 30 277 2.54e-26 107

Find 152 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGATATGGTTCTATTTC+TGG 0.132714 1_3:-56718265 Msa0127440:three_prime_UTR
GTTATATATATAACTAATTT+TGG 0.139303 1_3:-56718189 Msa0127440:three_prime_UTR
GGGAGCTATGGCCATGTTTA+TGG 0.200844 1_3:-56718340 Msa0127440:three_prime_UTR
CACCCACCCCATCAGGAAAT+TGG 0.222970 1_3:-56718401 Msa0127440:three_prime_UTR
ACAGAGAAATGCTCATTATT+TGG 0.229509 1_3:+56718652 None:intergenic
AAATGCTTCTTCTTTCTTGA+TGG 0.233142 1_3:-56720289 Msa0127440:five_prime_UTR
ACGTCTTTGCAAATGTAAAT+AGG 0.243260 1_3:-56718005 Msa0127440:three_prime_UTR
CCATCAAGGCTTCGACCTTT+TGG 0.246635 1_3:+56718823 None:intergenic
TTGTCGTCTCGGTGAATTAT+AGG 0.247260 1_3:-56719203 Msa0127440:CDS
ATGGGTGGAAAGCTGTTAAA+TGG 0.260029 1_3:-56719143 Msa0127440:CDS
CTTCAGTTGTCCTCCTTGTT+TGG 0.278009 1_3:-56718034 Msa0127440:three_prime_UTR
AAGAGTCTTGTGGTGGTTGC+TGG 0.278599 1_3:-56718787 Msa0127440:CDS
TAATGTTACCTTTGAATCAT+TGG 0.295142 1_3:+56720167 None:intergenic
TGATCTCTGTCTTCCCCTTC+AGG 0.298031 1_3:+56718868 None:intergenic
TGCTGGTTTGGATCTTGTTC+AGG 0.302371 1_3:-56718770 Msa0127440:CDS
TCTCCTCCTTCATTCACCTT+TGG 0.302485 1_3:-56720318 Msa0127440:five_prime_UTR
ATTGTATGCTAACTTGAAAT+TGG 0.306162 1_3:+56719548 None:intergenic
TATCATATAAGTTCCTAATC+AGG 0.325409 1_3:+56718487 None:intergenic
AATGTTACCTTTGAATCATT+GGG 0.326815 1_3:+56720168 None:intergenic
TCTTGTGGTGGTTGCTGGTT+TGG 0.332790 1_3:-56718782 Msa0127440:CDS
TCCAGCTTTCTCAAGTCCTT+TGG 0.334783 1_3:+56718729 None:intergenic
TCCACAGGATTCGCATTTGC+TGG 0.346221 1_3:+56719462 None:intergenic
AGCATTGGACTCTGGGATTC+CGG 0.350883 1_3:-56719016 Msa0127440:CDS
AGGACTTTGCTCCCCTGATT+AGG 0.354879 1_3:-56718500 Msa0127440:three_prime_UTR
GCAACCACCACAAGACTCTT+AGG 0.357754 1_3:+56718790 None:intergenic
ATAGGCGTGCGCCTGAAAAT+AGG 0.363489 1_3:-56719185 Msa0127440:CDS
CTTGTTCAGGATTGGCAATT+GGG 0.363782 1_3:-56718757 Msa0127440:CDS
TCTTGTTCAGGATTGGCAAT+TGG 0.368427 1_3:-56718758 Msa0127440:CDS
GACTCTGGGATTCCGGTGTT+GGG 0.383791 1_3:-56719009 Msa0127440:CDS
TGGCTATGTTGCGGTGTGAT+TGG 0.392294 1_3:-56720421 Msa0127440:five_prime_UTR
CATTGAAAGCATTGGACTCT+GGG 0.392347 1_3:-56719023 Msa0127440:CDS
GGACTCTGGGATTCCGGTGT+TGG 0.395996 1_3:-56719010 Msa0127440:CDS
ATACTGCTAAACCCTTTGTT+TGG 0.396562 1_3:-56718982 Msa0127440:CDS
ATTAATTGTGTCTGTGAGAT+TGG 0.399827 1_3:-56718465 Msa0127440:three_prime_UTR
GAAGATATGGTTCTATTTCT+GGG 0.401998 1_3:-56718264 Msa0127440:three_prime_UTR
TTCTCGAGCAAGCCACGGTT+GGG 0.404625 1_3:-56718687 Msa0127440:CDS
GGAAGAACCTCAGCAGTAAC+AGG 0.409700 1_3:+56719327 None:intergenic
GTTTGGATCTTGTTCAGGAT+TGG 0.415765 1_3:-56718765 Msa0127440:CDS
AGAAAATGCTAAAGTAAAAC+AGG 0.416926 1_3:+56720380 None:intergenic
GAATCCGAAAAGCGTCTTGA+TGG 0.417426 1_3:-56718943 Msa0127440:CDS
TGAAAGATAGAGACTGGTAT+TGG 0.418998 1_3:-56718903 Msa0127440:CDS
GGAGCTATGGCCATGTTTAT+GGG 0.420489 1_3:-56718339 Msa0127440:three_prime_UTR
TGTTGTTCTTCTCCCTCAAC+AGG 0.421393 1_3:+56719375 None:intergenic
CATCACGCGTGTAACCCTTT+TGG 0.421489 1_3:-56718847 Msa0127440:CDS
CGAATCTACCGTCCTGTTGA+GGG 0.426280 1_3:-56719387 Msa0127440:CDS
TCTGGAGCACCCACCCCATC+AGG 0.427760 1_3:-56718408 Msa0127440:three_prime_UTR
CCAAAAGGTCGAAGCCTTGA+TGG 0.429491 1_3:-56718823 Msa0127440:CDS
TGCTAAACCCTTTGTTTGGC+GGG 0.429653 1_3:-56718978 Msa0127440:CDS
GTGGGTAATCACAACTTTAG+TGG 0.434751 1_3:+56718314 None:intergenic
ATTTGGATTGTGGTTGGTTG+TGG 0.435688 1_3:-56720441 Msa0127440:five_prime_UTR
AGTTGGTTACTTCCAGCCAT+TGG 0.441895 1_3:+56720195 None:intergenic
CAGTGGGGCTTGCCCTTGTA+TGG 0.443406 1_3:-56718217 Msa0127440:three_prime_UTR
AACAAAATCAATCCAATGGC+TGG 0.444127 1_3:-56720207 Msa0127440:exon
TTGTCCTCCTTGTTTGGCAA+TGG 0.447399 1_3:-56718028 Msa0127440:three_prime_UTR
ATCAAAACCCACATGTTCAA+TGG 0.451446 1_3:+56719573 None:intergenic
ACCCACCCCATCAGGAAATT+GGG 0.453005 1_3:-56718400 Msa0127440:three_prime_UTR
CCTGTTGTCATGTTCTTCCA+CGG 0.459630 1_3:-56719306 Msa0127440:CDS
TATCCTTGCGCTTATGAAGA+TGG 0.468068 1_3:-56719162 Msa0127440:CDS
ATCATATAAGTTCCTAATCA+GGG 0.469230 1_3:+56718488 None:intergenic
GCATTGAAAGCATTGGACTC+TGG 0.474324 1_3:-56719024 Msa0127440:CDS
TTTCTCGAGCAAGCCACGGT+TGG 0.476045 1_3:-56718688 Msa0127440:CDS
TGGGTGGAAAGCTGTTAAAT+GGG 0.477103 1_3:-56719142 Msa0127440:CDS
CTAAAGTAAAACAGGAATGA+AGG 0.478351 1_3:+56720388 None:intergenic
CAAGGGCAAGCCCCACTGAT+TGG 0.481696 1_3:+56718222 None:intergenic
GAGTGGTGAAGGATAAGAAA+AGG 0.484696 1_3:+56720347 None:intergenic
CTACATGGTTGGTGATAGCT+CGG 0.486021 1_3:-56719070 Msa0127440:CDS
TTGTAATGCTGTTGTCGTCT+CGG 0.487442 1_3:-56719214 Msa0127440:CDS
GGAGAAGAGAAGAGTGGTGA+AGG 0.487809 1_3:+56720336 None:intergenic
CTTTCTTCCCCGCCAAACAA+AGG 0.487810 1_3:+56718970 None:intergenic
CACCCAATTTCCTGATGGGG+TGG 0.488269 1_3:+56718398 None:intergenic
CTGCTAAACCCTTTGTTTGG+CGG 0.491910 1_3:-56718979 Msa0127440:CDS
GTAGATTCGAGTAAGGAGAT+TGG 0.497470 1_3:+56719401 None:intergenic
CCCACTGATTGGCCATCAAA+AGG 0.497804 1_3:+56718233 None:intergenic
TGGAACTTTCAACCGTGACT+TGG 0.499887 1_3:-56719508 Msa0127440:CDS
CCGTGGAAGAACATGACAAC+AGG 0.502089 1_3:+56719306 None:intergenic
TATCCAACCTTGTGTGGCAT+AGG 0.503411 1_3:+56717901 None:intergenic
GCCAAAGGACTTGAGAAAGC+TGG 0.509171 1_3:-56718730 Msa0127440:CDS
TTTCTTCCCCGCCAAACAAA+GGG 0.509175 1_3:+56718971 None:intergenic
TGCCTTTCCTAAGAGTCTTG+TGG 0.514282 1_3:-56718797 Msa0127440:CDS
GGGTGTTGCGGATAGGTGAA+AGG 0.515509 1_3:-56718380 Msa0127440:three_prime_UTR
AATCTTCTCCGTCGTCCTGA+TGG 0.518337 1_3:-56719528 Msa0127440:CDS
CGCAACACCCAATTTCCTGA+TGG 0.518629 1_3:+56718393 None:intergenic
TATATAACACTTGCCATACA+AGG 0.518680 1_3:+56718204 None:intergenic
CAAAAGGTCGAAGCCTTGAT+GGG 0.521272 1_3:-56718822 Msa0127440:CDS
CTTCCTATGCCACACAAGGT+TGG 0.527827 1_3:-56717904 Msa0127440:three_prime_UTR
TTGAATCATTGGGGTTGAGT+TGG 0.528438 1_3:+56720178 None:intergenic
TGATACATTGTGTCGTCGAT+TGG 0.529626 1_3:-56719244 Msa0127440:CDS
CCATGTTGCATTGAAAGCAT+TGG 0.529699 1_3:-56719031 Msa0127440:CDS
AATGGGTTAACTCTAGAACT+TGG 0.530294 1_3:-56719125 Msa0127440:CDS
ACAGGAATGAAGGGAAAGAA+TGG 0.532589 1_3:+56720398 None:intergenic
AACGGTGTGTATTTGGATTG+TGG 0.541471 1_3:-56720451 None:intergenic
TCGAATCTACCGTCCTGTTG+AGG 0.542489 1_3:-56719388 Msa0127440:CDS
GAAGATCCAAAGGTGAATGA+AGG 0.544391 1_3:+56720312 None:intergenic
TCACGGTTGAAAGTTCCATC+AGG 0.545176 1_3:+56719513 None:intergenic
ACTTGGCAGAGTTTCTTGAT+CGG 0.546431 1_3:-56719491 Msa0127440:CDS
ATCCTTGCGCTTATGAAGAT+GGG 0.546497 1_3:-56719161 Msa0127440:CDS
GCAACACCCAATTTCCTGAT+GGG 0.551741 1_3:+56718394 None:intergenic
AAAGCATCAATCATATATGT+TGG 0.556799 1_3:-56718153 Msa0127440:three_prime_UTR
GGAAATTGGGTGTTGCGGAT+AGG 0.557101 1_3:-56718387 Msa0127440:three_prime_UTR
AATCCGAAAAGCGTCTTGAT+GGG 0.557814 1_3:-56718942 Msa0127440:CDS
TCAGAGTGAAAGATAGAGAC+TGG 0.557918 1_3:-56718909 Msa0127440:CDS
AGCAAATATCCAACCTTGTG+TGG 0.558731 1_3:+56717895 None:intergenic
GTGTGTATTTGGATTGTGGT+TGG 0.566404 1_3:-56720447 None:intergenic
GAAGGAGGAGAAGAGAAGAG+TGG 0.568713 1_3:+56720330 None:intergenic
TAAAGTAAAACAGGAATGAA+GGG 0.568741 1_3:+56720389 None:intergenic
AGCAGTATATTTCCCAACAC+CGG 0.572967 1_3:+56718997 None:intergenic
CAGGACGGTAGATTCGAGTA+AGG 0.573555 1_3:+56719394 None:intergenic
TAGGAAAGGCAACCCCATCA+AGG 0.574933 1_3:+56718809 None:intergenic
CACCCATCTTCATAAGCGCA+AGG 0.575641 1_3:+56719159 None:intergenic
AAGGTTCATATCTACATGGT+TGG 0.580511 1_3:-56719081 Msa0127440:CDS
TGAGCATTTCTCTGTTGTCA+TGG 0.580679 1_3:-56718644 Msa0127440:CDS
CTTTCCTAAGAGTCTTGTGG+TGG 0.585467 1_3:-56718794 Msa0127440:CDS
AAGACGTCCATTGCCAAACA+AGG 0.587397 1_3:+56718021 None:intergenic
ATGGTTGGTGATAGCTCGGG+CGG 0.594503 1_3:-56719066 Msa0127440:CDS
TACATGGTTGGTGATAGCTC+GGG 0.594607 1_3:-56719069 Msa0127440:CDS
ACATTGTGTCGTCGATTGGT+TGG 0.596982 1_3:-56719240 Msa0127440:CDS
AGAAGCATTTGAAGATCCAA+AGG 0.597630 1_3:+56720302 None:intergenic
CAGCAGTAACAGGCTTCTCA+AGG 0.598120 1_3:+56719337 None:intergenic
TGGTGGTTCCATTGAACATG+TGG 0.598890 1_3:-56719581 Msa0127440:CDS
CATCAGGAAATTGGGTGTTG+CGG 0.599996 1_3:-56718392 Msa0127440:three_prime_UTR
TGAGAAGCCTGTTACTGCTG+AGG 0.600623 1_3:-56719334 Msa0127440:CDS
ACTCAACCCCAATGATTCAA+AGG 0.601718 1_3:-56720175 Msa0127440:intron
ATGTTACCTTTGAATCATTG+GGG 0.602888 1_3:+56720169 None:intergenic
ACTCAACAAAATCAATCCAA+TGG 0.603090 1_3:-56720211 Msa0127440:exon
GGGTCTTCCTATGCCACACA+AGG 0.603642 1_3:-56717908 Msa0127440:three_prime_UTR
GCTATTTCTCGAGCAAGCCA+CGG 0.605537 1_3:-56718692 Msa0127440:CDS
GCTAAACCCTTTGTTTGGCG+GGG 0.608927 1_3:-56718977 Msa0127440:CDS
AAAGAGAAAACACCATCCAC+AGG 0.610297 1_3:+56719447 None:intergenic
ACCCAATTTCCTGATGGGGT+GGG 0.611604 1_3:+56718399 None:intergenic
CAAGAAACTCTGCCAAGTCA+CGG 0.617005 1_3:+56719496 None:intergenic
TGAAAGTTCCATCAGGACGA+CGG 0.623383 1_3:+56719520 None:intergenic
CAACACCCAATTTCCTGATG+GGG 0.624348 1_3:+56718395 None:intergenic
TAGCAAGGTTCATATCTACA+TGG 0.626488 1_3:-56719085 Msa0127440:CDS
TTTAGTGGTTCCCATAAACA+TGG 0.629664 1_3:+56718329 None:intergenic
GTTCTTCTCCCTCAACAGGA+CGG 0.631361 1_3:+56719379 None:intergenic
TGGCAATTGGGATATGCCAA+AGG 0.633591 1_3:-56718745 Msa0127440:CDS
CTTGCGCTTATGAAGATGGG+TGG 0.634175 1_3:-56719158 Msa0127440:CDS
TCCAGCAAATGCGAATCCTG+TGG 0.635598 1_3:-56719463 Msa0127440:CDS
CACCACAAGACTCTTAGGAA+AGG 0.635838 1_3:+56718795 None:intergenic
GATCCAAAGGTGAATGAAGG+AGG 0.637419 1_3:+56720315 None:intergenic
CCAATGCTTTCAATGCAACA+TGG 0.638442 1_3:+56719031 None:intergenic
GGTTGGTTGTGGCTATGTTG+CGG 0.645031 1_3:-56720430 Msa0127440:five_prime_UTR
GGTGGTTCCATTGAACATGT+GGG 0.653078 1_3:-56719580 Msa0127440:CDS
TCATATAAGTTCCTAATCAG+GGG 0.655979 1_3:+56718489 None:intergenic
AAAAGGTCGAAGCCTTGATG+GGG 0.659766 1_3:-56718821 Msa0127440:CDS
ATATAACACTTGCCATACAA+GGG 0.663659 1_3:+56718205 None:intergenic
TGGTTGGTGATAGCTCGGGC+GGG 0.665839 1_3:-56719065 Msa0127440:CDS
GTTGTCATGTTCTTCCACGG+TGG 0.676583 1_3:-56719303 Msa0127440:CDS
GCAAATGCGAATCCTGTGGA+TGG 0.677631 1_3:-56719459 Msa0127440:CDS
ACGTCCATTGCCAAACAAGG+AGG 0.708889 1_3:+56718024 None:intergenic
TAGCAAGTAAAACCCAACCG+TGG 0.774514 1_3:+56718675 None:intergenic
AATGTGCAAAACTTCCACCG+TGG 0.777602 1_3:+56719289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATTTTTTAATATTGTTA+TGG - chr1_3:56718421-56718440 Msa0127440:three_prime_UTR 10.0%
!!! GTTATATATATAACTAATTT+TGG - chr1_3:56720084-56720103 Msa0127440:intron 10.0%
!!! TTTTGTTTCATACAAATTTA+AGG - chr1_3:56718206-56718225 Msa0127440:three_prime_UTR 15.0%
!! TCTTAATTTCTCTAAATTAA+TGG - chr1_3:56718548-56718567 Msa0127440:three_prime_UTR 15.0%
!! CTTAATTTCTCTAAATTAAT+GGG - chr1_3:56718549-56718568 Msa0127440:three_prime_UTR 15.0%
!!! TTTGGTTTAAAATTTCATTT+TGG - chr1_3:56718572-56718591 Msa0127440:three_prime_UTR 15.0%
!! ATTAAAAACAAGTTAATAAG+TGG + chr1_3:56719751-56719770 None:intergenic 15.0%
!!! TATTAACTTGTTTTTAATGT+AGG - chr1_3:56719753-56719772 Msa0127440:intron 15.0%
!!! ATCAGTGTAATAAATAGTTT+TGG - chr1_3:56718394-56718413 Msa0127440:three_prime_UTR 20.0%
!!! TCAGTGTAATAAATAGTTTT+GGG - chr1_3:56718395-56718414 Msa0127440:three_prime_UTR 20.0%
!!! GATGTAATAGTTTTTTATGT+TGG - chr1_3:56718454-56718473 Msa0127440:three_prime_UTR 20.0%
!!! TAATAGTTTTTTATGTTGGT+TGG - chr1_3:56718458-56718477 Msa0127440:three_prime_UTR 20.0%
!!! TATAGCTATATTATGTTTTC+TGG - chr1_3:56719847-56719866 Msa0127440:intron 20.0%
!!! GTATTGTGTTTTTTTATGTA+TGG - chr1_3:56720327-56720346 Msa0127440:five_prime_UTR 20.0%
!!! TATGGATAAGATATTTTTCA+GGG - chr1_3:56720345-56720364 Msa0127440:five_prime_UTR 20.0%
! TAAAGTAAAACAGGAATGAA+GGG + chr1_3:56717887-56717906 None:intergenic 25.0%
! AGAAAATGCTAAAGTAAAAC+AGG + chr1_3:56717896-56717915 None:intergenic 25.0%
! AATGTTACCTTTGAATCATT+GGG + chr1_3:56718108-56718127 None:intergenic 25.0%
! TAATGTTACCTTTGAATCAT+TGG + chr1_3:56718109-56718128 None:intergenic 25.0%
! ACAAAAGACCAAAAAATCAA+AGG + chr1_3:56718264-56718283 None:intergenic 25.0%
! TTAGACTTTGTCAATGTTTA+GGG - chr1_3:56718505-56718524 Msa0127440:three_prime_UTR 25.0%
!!! TTTCTCTAAATTAATGGGTT+TGG - chr1_3:56718554-56718573 Msa0127440:three_prime_UTR 25.0%
! TAGATAAAATTTGATGCAGA+TGG - chr1_3:56718672-56718691 Msa0127440:CDS 25.0%
! ATTGTATGCTAACTTGAAAT+TGG + chr1_3:56718728-56718747 None:intergenic 25.0%
!! CTTTTGATGTTATTGTTGAT+CGG - chr1_3:56718845-56718864 Msa0127440:CDS 25.0%
!! TTTTGATGTTATTGTTGATC+GGG - chr1_3:56718846-56718865 Msa0127440:CDS 25.0%
! ATCATATAAGTTCCTAATCA+GGG + chr1_3:56719788-56719807 None:intergenic 25.0%
! TATCATATAAGTTCCTAATC+AGG + chr1_3:56719789-56719808 None:intergenic 25.0%
!!! AAAGGTTTTTAGGACAAAAA+AGG - chr1_3:56719911-56719930 Msa0127440:intron 25.0%
!!! AAGGTTTTTAGGACAAAAAA+GGG - chr1_3:56719912-56719931 Msa0127440:intron 25.0%
!!! ACTAATTTTGGAACTATGAT+AGG - chr1_3:56720096-56720115 Msa0127440:intron 25.0%
!!! CTAATTTTGGAACTATGATA+GGG - chr1_3:56720097-56720116 Msa0127440:intron 25.0%
!! AAAGCATCAATCATATATGT+TGG - chr1_3:56720120-56720139 Msa0127440:intron 25.0%
!!! TCTTTTACTTTTAGCTGTAA+TGG - chr1_3:56720296-56720315 Msa0127440:five_prime_UTR 25.0%
!! GTATGGATAAGATATTTTTC+AGG - chr1_3:56720344-56720363 Msa0127440:five_prime_UTR 25.0%
CTAAAGTAAAACAGGAATGA+AGG + chr1_3:56717888-56717907 None:intergenic 30.0%
AAATGCTTCTTCTTTCTTGA+TGG - chr1_3:56717984-56718003 Msa0127440:three_prime_UTR 30.0%
! TGATTTTGTTGAGTGTAGAT+CGG + chr1_3:56718056-56718075 None:intergenic 30.0%
ACTCAACAAAATCAATCCAA+TGG - chr1_3:56718062-56718081 Msa0127440:three_prime_UTR 30.0%
ATGTTACCTTTGAATCATTG+GGG + chr1_3:56718107-56718126 None:intergenic 30.0%
AACAGCAACATAGTATAGTA+TGG + chr1_3:56718165-56718184 None:intergenic 30.0%
ATACTATACTATGTTGCTGT+TGG - chr1_3:56718164-56718183 Msa0127440:three_prime_UTR 30.0%
GGAAAGAAATAAACATCGTA+CGG + chr1_3:56718234-56718253 None:intergenic 30.0%
CAAAAAATCAAAGGCGAAAA+AGG + chr1_3:56718255-56718274 None:intergenic 30.0%
!! CTTTTTCGCCTTTGATTTTT+TGG - chr1_3:56718253-56718272 Msa0127440:three_prime_UTR 30.0%
!! GTTTAGTCTTTTTCTTTCGT+TGG - chr1_3:56718282-56718301 Msa0127440:three_prime_UTR 30.0%
!!! AGTTTTTTATGTTGGTTGGT+TGG - chr1_3:56718462-56718481 Msa0127440:three_prime_UTR 30.0%
! ACAAAGTCTAAGATAGAAAC+AGG + chr1_3:56718496-56718515 None:intergenic 30.0%
CTTAGACTTTGTCAATGTTT+AGG - chr1_3:56718504-56718523 Msa0127440:three_prime_UTR 30.0%
! ATGTTTAGGGTTTGGTTATT+TGG - chr1_3:56718518-56718537 Msa0127440:three_prime_UTR 30.0%
AATCAGAAACTAGCTACAAA+AGG + chr1_3:56718612-56718631 None:intergenic 30.0%
ATAAAATTTGATGCAGATGG+TGG - chr1_3:56718675-56718694 Msa0127440:CDS 30.0%
ACAGAGAAATGCTCATTATT+TGG + chr1_3:56719624-56719643 None:intergenic 30.0%
TCATATAAGTTCCTAATCAG+GGG + chr1_3:56719787-56719806 None:intergenic 30.0%
ATTAATTGTGTCTGTGAGAT+TGG - chr1_3:56719808-56719827 Msa0127440:intron 30.0%
!!! AGGTTTTTAGGACAAAAAAG+GGG - chr1_3:56719913-56719932 Msa0127440:intron 30.0%
! GAAGATATGGTTCTATTTCT+GGG - chr1_3:56720009-56720028 Msa0127440:intron 30.0%
ATATAACACTTGCCATACAA+GGG + chr1_3:56720071-56720090 None:intergenic 30.0%
TATATAACACTTGCCATACA+AGG + chr1_3:56720072-56720091 None:intergenic 30.0%
ACGTCTTTGCAAATGTAAAT+AGG - chr1_3:56720268-56720287 Msa0127440:five_prime_UTR 30.0%
!! TTACTTTTAGCTGTAATGGT+AGG - chr1_3:56720300-56720319 Msa0127440:five_prime_UTR 30.0%
!! TACTTTTAGCTGTAATGGTA+GGG - chr1_3:56720301-56720320 Msa0127440:five_prime_UTR 30.0%
!! AGAAGCATTTGAAGATCCAA+AGG + chr1_3:56717974-56717993 None:intergenic 35.0%
TGAGTGTAGATCGGTAAAAA+AGG + chr1_3:56718047-56718066 None:intergenic 35.0%
AACAAAATCAATCCAATGGC+TGG - chr1_3:56718066-56718085 Msa0127440:three_prime_UTR 35.0%
!! GTCTTTTTCTTTCGTTGGTT+TGG - chr1_3:56718287-56718306 Msa0127440:three_prime_UTR 35.0%
!!! TTTTCTTTCGTTGGTTTGGT+TGG - chr1_3:56718291-56718310 Msa0127440:three_prime_UTR 35.0%
! CTTTGTCAATGTTTAGGGTT+TGG - chr1_3:56718510-56718529 Msa0127440:three_prime_UTR 35.0%
! TAGGGTTTGGTTATTTGGTT+TGG - chr1_3:56718523-56718542 Msa0127440:three_prime_UTR 35.0%
ATCAAAACCCACATGTTCAA+TGG + chr1_3:56718703-56718722 None:intergenic 35.0%
! TGGAAGTTTTGCACATTCTT+CGG - chr1_3:56718990-56719009 Msa0127440:CDS 35.0%
!! AATGGGTTAACTCTAGAACT+TGG - chr1_3:56719148-56719167 Msa0127440:CDS 35.0%
GCAGAGTAAAAAAGATAGCA+AGG - chr1_3:56719173-56719192 Msa0127440:CDS 35.0%
TAGCAAGGTTCATATCTACA+TGG - chr1_3:56719188-56719207 Msa0127440:CDS 35.0%
AAGGTTCATATCTACATGGT+TGG - chr1_3:56719192-56719211 Msa0127440:CDS 35.0%
ATACTGCTAAACCCTTTGTT+TGG - chr1_3:56719291-56719310 Msa0127440:CDS 35.0%
TGAAAGATAGAGACTGGTAT+TGG - chr1_3:56719370-56719389 Msa0127440:CDS 35.0%
! TTAACTTTTGCCACACAAGA+AGG - chr1_3:56719691-56719710 Msa0127440:intron 35.0%
! TAACTTTTGCCACACAAGAA+GGG - chr1_3:56719692-56719711 Msa0127440:intron 35.0%
!!! GGGTTTTAGAAAGATTGTGT+AGG - chr1_3:56719714-56719733 Msa0127440:intron 35.0%
TTTAGTGGTTCCCATAAACA+TGG + chr1_3:56719947-56719966 None:intergenic 35.0%
!! TTTTGGCTGAAAGTCAAAGT+GGG + chr1_3:56719980-56719999 None:intergenic 35.0%
!!! TTTTTGGCTGAAAGTCAAAG+TGG + chr1_3:56719981-56720000 None:intergenic 35.0%
! TTTGACTTTCAGCCAAAAAG+AGG - chr1_3:56719982-56720001 Msa0127440:intron 35.0%
! ATATCTTCCTCTCCTCTTTT+TGG + chr1_3:56719997-56720016 None:intergenic 35.0%
AAAAAGAGGAGAGGAAGATA+TGG - chr1_3:56719996-56720015 Msa0127440:intron 35.0%
! GGAAGATATGGTTCTATTTC+TGG - chr1_3:56720008-56720027 Msa0127440:intron 35.0%
ACAGGAATGAAGGGAAAGAA+TGG + chr1_3:56717878-56717897 None:intergenic 40.0%
GAGTGGTGAAGGATAAGAAA+AGG + chr1_3:56717929-56717948 None:intergenic 40.0%
GAAGATCCAAAGGTGAATGA+AGG + chr1_3:56717964-56717983 None:intergenic 40.0%
TTGAATCATTGGGGTTGAGT+TGG + chr1_3:56718098-56718117 None:intergenic 40.0%
ACTCAACCCCAATGATTCAA+AGG - chr1_3:56718098-56718117 Msa0127440:three_prime_UTR 40.0%
ACTTGGCAGAGTTTCTTGAT+CGG - chr1_3:56718782-56718801 Msa0127440:CDS 40.0%
AAAGAGAAAACACCATCCAC+AGG + chr1_3:56718829-56718848 None:intergenic 40.0%
GTAGATTCGAGTAAGGAGAT+TGG + chr1_3:56718875-56718894 None:intergenic 40.0%
TGATACATTGTGTCGTCGAT+TGG - chr1_3:56719029-56719048 Msa0127440:CDS 40.0%
TTGTAATGCTGTTGTCGTCT+CGG - chr1_3:56719059-56719078 Msa0127440:CDS 40.0%
TTGTCGTCTCGGTGAATTAT+AGG - chr1_3:56719070-56719089 Msa0127440:CDS 40.0%
TATCCTTGCGCTTATGAAGA+TGG - chr1_3:56719111-56719130 Msa0127440:CDS 40.0%
ATCCTTGCGCTTATGAAGAT+GGG - chr1_3:56719112-56719131 Msa0127440:CDS 40.0%
ATGGGTGGAAAGCTGTTAAA+TGG - chr1_3:56719130-56719149 Msa0127440:CDS 40.0%
TGGGTGGAAAGCTGTTAAAT+GGG - chr1_3:56719131-56719150 Msa0127440:CDS 40.0%
CCAATGCTTTCAATGCAACA+TGG + chr1_3:56719245-56719264 None:intergenic 40.0%
! CCATGTTGCATTGAAAGCAT+TGG - chr1_3:56719242-56719261 Msa0127440:CDS 40.0%
!! CATTGAAAGCATTGGACTCT+GGG - chr1_3:56719250-56719269 Msa0127440:CDS 40.0%
AGCAGTATATTTCCCAACAC+CGG + chr1_3:56719279-56719298 None:intergenic 40.0%
!! AATCCGAAAAGCGTCTTGAT+GGG - chr1_3:56719331-56719350 Msa0127440:CDS 40.0%
TCAGAGTGAAAGATAGAGAC+TGG - chr1_3:56719364-56719383 Msa0127440:CDS 40.0%
! TGTAACCCTTTTGGTCCAAA+AGG - chr1_3:56719435-56719454 Msa0127440:CDS 40.0%
! TTCGACCTTTTGGACCAAAA+GGG + chr1_3:56719443-56719462 None:intergenic 40.0%
GTTTGGATCTTGTTCAGGAT+TGG - chr1_3:56719508-56719527 Msa0127440:CDS 40.0%
! TCTTGTTCAGGATTGGCAAT+TGG - chr1_3:56719515-56719534 Msa0127440:CDS 40.0%
! CTTGTTCAGGATTGGCAATT+GGG - chr1_3:56719516-56719535 Msa0127440:CDS 40.0%
TGAGCATTTCTCTGTTGTCA+TGG - chr1_3:56719629-56719648 Msa0127440:intron 40.0%
! AACTTTTGCCACACAAGAAG+GGG - chr1_3:56719693-56719712 Msa0127440:intron 40.0%
! CGGATAGGTGAAAGGTTTTT+AGG - chr1_3:56719901-56719920 Msa0127440:intron 40.0%
GTGGGTAATCACAACTTTAG+TGG + chr1_3:56719962-56719981 None:intergenic 40.0%
AGCAAATATCCAACCTTGTG+TGG + chr1_3:56720381-56720400 None:intergenic 40.0%
TCTCCTCCTTCATTCACCTT+TGG - chr1_3:56717955-56717974 Msa0127440:three_prime_UTR 45.0%
GATCCAAAGGTGAATGAAGG+AGG + chr1_3:56717961-56717980 None:intergenic 45.0%
AGTTGGTTACTTCCAGCCAT+TGG + chr1_3:56718081-56718100 None:intergenic 45.0%
TGGTGGTTCCATTGAACATG+TGG - chr1_3:56718692-56718711 Msa0127440:CDS 45.0%
GGTGGTTCCATTGAACATGT+GGG - chr1_3:56718693-56718712 Msa0127440:CDS 45.0%
TGAAAGTTCCATCAGGACGA+CGG + chr1_3:56718756-56718775 None:intergenic 45.0%
TCACGGTTGAAAGTTCCATC+AGG + chr1_3:56718763-56718782 None:intergenic 45.0%
TGGAACTTTCAACCGTGACT+TGG - chr1_3:56718765-56718784 Msa0127440:CDS 45.0%
CAAGAAACTCTGCCAAGTCA+CGG + chr1_3:56718780-56718799 None:intergenic 45.0%
TGTTGTTCTTCTCCCTCAAC+AGG + chr1_3:56718901-56718920 None:intergenic 45.0%
CCTGTTGTCATGTTCTTCCA+CGG - chr1_3:56718967-56718986 Msa0127440:CDS 45.0%
AATGTGCAAAACTTCCACCG+TGG + chr1_3:56718987-56719006 None:intergenic 45.0%
! ACATTGTGTCGTCGATTGGT+TGG - chr1_3:56719033-56719052 Msa0127440:CDS 45.0%
! GCGCAAGGATACCTATTTTC+AGG + chr1_3:56719102-56719121 None:intergenic 45.0%
!! CTACATGGTTGGTGATAGCT+CGG - chr1_3:56719203-56719222 Msa0127440:CDS 45.0%
!! TACATGGTTGGTGATAGCTC+GGG - chr1_3:56719204-56719223 Msa0127440:CDS 45.0%
!! GCATTGAAAGCATTGGACTC+TGG - chr1_3:56719249-56719268 Msa0127440:CDS 45.0%
! CTGCTAAACCCTTTGTTTGG+CGG - chr1_3:56719294-56719313 Msa0127440:CDS 45.0%
! TGCTAAACCCTTTGTTTGGC+GGG - chr1_3:56719295-56719314 Msa0127440:CDS 45.0%
TTTCTTCCCCGCCAAACAAA+GGG + chr1_3:56719305-56719324 None:intergenic 45.0%
!! GAATCCGAAAAGCGTCTTGA+TGG - chr1_3:56719330-56719349 Msa0127440:CDS 45.0%
! TCTCCCATCAAGACGCTTTT+CGG + chr1_3:56719337-56719356 None:intergenic 45.0%
! TGGAGAGCTTTTCTTCCTGA+AGG - chr1_3:56719390-56719409 Msa0127440:CDS 45.0%
! GGAGAGCTTTTCTTCCTGAA+GGG - chr1_3:56719391-56719410 Msa0127440:CDS 45.0%
! GAGAGCTTTTCTTCCTGAAG+GGG - chr1_3:56719392-56719411 Msa0127440:CDS 45.0%
! CTTCGACCTTTTGGACCAAA+AGG + chr1_3:56719444-56719463 None:intergenic 45.0%
CAAAAGGTCGAAGCCTTGAT+GGG - chr1_3:56719451-56719470 Msa0127440:CDS 45.0%
AAAAGGTCGAAGCCTTGATG+GGG - chr1_3:56719452-56719471 Msa0127440:CDS 45.0%
TGCCTTTCCTAAGAGTCTTG+TGG - chr1_3:56719476-56719495 Msa0127440:CDS 45.0%
CACCACAAGACTCTTAGGAA+AGG + chr1_3:56719481-56719500 None:intergenic 45.0%
! CTTTCCTAAGAGTCTTGTGG+TGG - chr1_3:56719479-56719498 Msa0127440:CDS 45.0%
!! TGCTGGTTTGGATCTTGTTC+AGG - chr1_3:56719503-56719522 Msa0127440:CDS 45.0%
TGGCAATTGGGATATGCCAA+AGG - chr1_3:56719528-56719547 Msa0127440:CDS 45.0%
TCCAGCTTTCTCAAGTCCTT+TGG + chr1_3:56719547-56719566 None:intergenic 45.0%
TAGCAAGTAAAACCCAACCG+TGG + chr1_3:56719601-56719620 None:intergenic 45.0%
! ACTTTTGCCACACAAGAAGG+GGG - chr1_3:56719694-56719713 Msa0127440:intron 45.0%
! TCTAAAACCCCCTTCTTGTG+TGG + chr1_3:56719704-56719723 None:intergenic 45.0%
CAACACCCAATTTCCTGATG+GGG + chr1_3:56719881-56719900 None:intergenic 45.0%
GCAACACCCAATTTCCTGAT+GGG + chr1_3:56719882-56719901 None:intergenic 45.0%
! CATCAGGAAATTGGGTGTTG+CGG - chr1_3:56719881-56719900 Msa0127440:intron 45.0%
AGGACAAAAAAGGGGAGCTA+TGG - chr1_3:56719921-56719940 Msa0127440:intron 45.0%
GGAGCTATGGCCATGTTTAT+GGG - chr1_3:56719934-56719953 Msa0127440:intron 45.0%
CTTTCAGCCAAAAAGAGGAG+AGG - chr1_3:56719987-56720006 Msa0127440:intron 45.0%
! TGGGCTTTCTGACCTTTTGA+TGG - chr1_3:56720028-56720047 Msa0127440:intron 45.0%
!! ACCTTTTGATGGCCAATCAG+TGG - chr1_3:56720039-56720058 Msa0127440:intron 45.0%
!! CCTTTTGATGGCCAATCAGT+GGG - chr1_3:56720040-56720059 Msa0127440:intron 45.0%
!! CTTTTGATGGCCAATCAGTG+GGG - chr1_3:56720041-56720060 Msa0127440:intron 45.0%
CTTCAGTTGTCCTCCTTGTT+TGG - chr1_3:56720239-56720258 Msa0127440:five_prime_UTR 45.0%
! TTGTCCTCCTTGTTTGGCAA+TGG - chr1_3:56720245-56720264 Msa0127440:five_prime_UTR 45.0%
AAGACGTCCATTGCCAAACA+AGG + chr1_3:56720255-56720274 None:intergenic 45.0%
TATCCAACCTTGTGTGGCAT+AGG + chr1_3:56720375-56720394 None:intergenic 45.0%
! GGTTGGTTGTGGCTATGTTG+CGG - chr1_3:56717843-56717862 Msa0127440:three_prime_UTR 50.0%
TGGCTATGTTGCGGTGTGAT+TGG - chr1_3:56717852-56717871 Msa0127440:three_prime_UTR 50.0%
GGAGAAGAGAAGAGTGGTGA+AGG + chr1_3:56717940-56717959 None:intergenic 50.0%
GAAGGAGGAGAAGAGAAGAG+TGG + chr1_3:56717946-56717965 None:intergenic 50.0%
AATCTTCTCCGTCGTCCTGA+TGG - chr1_3:56718745-56718764 Msa0127440:CDS 50.0%
TCCAGCAAATGCGAATCCTG+TGG - chr1_3:56718810-56718829 Msa0127440:CDS 50.0%
TCCACAGGATTCGCATTTGC+TGG + chr1_3:56718814-56718833 None:intergenic 50.0%
GCAAATGCGAATCCTGTGGA+TGG - chr1_3:56718814-56718833 Msa0127440:CDS 50.0%
CAGGACGGTAGATTCGAGTA+AGG + chr1_3:56718882-56718901 None:intergenic 50.0%
TCGAATCTACCGTCCTGTTG+AGG - chr1_3:56718885-56718904 Msa0127440:CDS 50.0%
CGAATCTACCGTCCTGTTGA+GGG - chr1_3:56718886-56718905 Msa0127440:CDS 50.0%
GTTCTTCTCCCTCAACAGGA+CGG + chr1_3:56718897-56718916 None:intergenic 50.0%
CAGCAGTAACAGGCTTCTCA+AGG + chr1_3:56718939-56718958 None:intergenic 50.0%
TGAGAAGCCTGTTACTGCTG+AGG - chr1_3:56718939-56718958 Msa0127440:CDS 50.0%
GGAAGAACCTCAGCAGTAAC+AGG + chr1_3:56718949-56718968 None:intergenic 50.0%
CCGTGGAAGAACATGACAAC+AGG + chr1_3:56718970-56718989 None:intergenic 50.0%
GTTGTCATGTTCTTCCACGG+TGG - chr1_3:56718970-56718989 Msa0127440:CDS 50.0%
ATAGGCGTGCGCCTGAAAAT+AGG - chr1_3:56719088-56719107 Msa0127440:CDS 50.0%
CACCCATCTTCATAAGCGCA+AGG + chr1_3:56719117-56719136 None:intergenic 50.0%
CTTGCGCTTATGAAGATGGG+TGG - chr1_3:56719115-56719134 Msa0127440:CDS 50.0%
!! AGCATTGGACTCTGGGATTC+CGG - chr1_3:56719257-56719276 Msa0127440:CDS 50.0%
! GCTAAACCCTTTGTTTGGCG+GGG - chr1_3:56719296-56719315 Msa0127440:CDS 50.0%
CTTTCTTCCCCGCCAAACAA+AGG + chr1_3:56719306-56719325 None:intergenic 50.0%
TGATCTCTGTCTTCCCCTTC+AGG + chr1_3:56719408-56719427 None:intergenic 50.0%
! CATCACGCGTGTAACCCTTT+TGG - chr1_3:56719426-56719445 Msa0127440:CDS 50.0%
! CCATCAAGGCTTCGACCTTT+TGG + chr1_3:56719453-56719472 None:intergenic 50.0%
CCAAAAGGTCGAAGCCTTGA+TGG - chr1_3:56719450-56719469 Msa0127440:CDS 50.0%
TAGGAAAGGCAACCCCATCA+AGG + chr1_3:56719467-56719486 None:intergenic 50.0%
GCAACCACCACAAGACTCTT+AGG + chr1_3:56719486-56719505 None:intergenic 50.0%
! AAGAGTCTTGTGGTGGTTGC+TGG - chr1_3:56719486-56719505 Msa0127440:CDS 50.0%
! TCTTGTGGTGGTTGCTGGTT+TGG - chr1_3:56719491-56719510 Msa0127440:CDS 50.0%
GCCAAAGGACTTGAGAAAGC+TGG - chr1_3:56719543-56719562 Msa0127440:CDS 50.0%
!! GCTATTTCTCGAGCAAGCCA+CGG - chr1_3:56719581-56719600 Msa0127440:CDS 50.0%
AGGACTTTGCTCCCCTGATT+AGG - chr1_3:56719773-56719792 Msa0127440:intron 50.0%
ACCCACCCCATCAGGAAATT+GGG - chr1_3:56719873-56719892 Msa0127440:intron 50.0%
ACCCAATTTCCTGATGGGGT+GGG + chr1_3:56719877-56719896 None:intergenic 50.0%
CGCAACACCCAATTTCCTGA+TGG + chr1_3:56719883-56719902 None:intergenic 50.0%
! GGAAATTGGGTGTTGCGGAT+AGG - chr1_3:56719886-56719905 Msa0127440:intron 50.0%
GGGAGCTATGGCCATGTTTA+TGG - chr1_3:56719933-56719952 Msa0127440:intron 50.0%
! CCCACTGATTGGCCATCAAA+AGG + chr1_3:56720043-56720062 None:intergenic 50.0%
ACGTCCATTGCCAAACAAGG+AGG + chr1_3:56720252-56720271 None:intergenic 50.0%
CTTCCTATGCCACACAAGGT+TGG - chr1_3:56720369-56720388 Msa0127440:five_prime_UTR 50.0%
!! ATGGTTGGTGATAGCTCGGG+CGG - chr1_3:56719207-56719226 Msa0127440:CDS 55.0%
!! GACTCTGGGATTCCGGTGTT+GGG - chr1_3:56719264-56719283 Msa0127440:CDS 55.0%
TTTCTCGAGCAAGCCACGGT+TGG - chr1_3:56719585-56719604 Msa0127440:CDS 55.0%
TTCTCGAGCAAGCCACGGTT+GGG - chr1_3:56719586-56719605 Msa0127440:intron 55.0%
CACCCACCCCATCAGGAAAT+TGG - chr1_3:56719872-56719891 Msa0127440:intron 55.0%
CACCCAATTTCCTGATGGGG+TGG + chr1_3:56719878-56719897 None:intergenic 55.0%
! GGGTGTTGCGGATAGGTGAA+AGG - chr1_3:56719893-56719912 Msa0127440:intron 55.0%
GGGTCTTCCTATGCCACACA+AGG - chr1_3:56720365-56720384 Msa0127440:five_prime_UTR 55.0%
!! TGGTTGGTGATAGCTCGGGC+GGG - chr1_3:56719208-56719227 Msa0127440:CDS 60.0%
!! GGACTCTGGGATTCCGGTGT+TGG - chr1_3:56719263-56719282 Msa0127440:CDS 60.0%
CAAGGGCAAGCCCCACTGAT+TGG + chr1_3:56720054-56720073 None:intergenic 60.0%
CAGTGGGGCTTGCCCTTGTA+TGG - chr1_3:56720056-56720075 Msa0127440:intron 60.0%
! TCTGGAGCACCCACCCCATC+AGG - chr1_3:56719865-56719884 Msa0127440:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56717834 56720461 56717834 ID=Msa0127440;Name=Msa0127440
chr1_3 mRNA 56717834 56720461 56717834 ID=Msa0127440-mRNA-1;Parent=Msa0127440;Name=Msa0127440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=247|1|1|1|1|1|2|772|345
chr1_3 exon 56717834 56719604 56717834 ID=Msa0127440-mRNA-1:exon:17980;Parent=Msa0127440-mRNA-1
chr1_3 exon 56720176 56720461 56720176 ID=Msa0127440-mRNA-1:exon:17979;Parent=Msa0127440-mRNA-1
chr1_3 five_prime_UTR 56720215 56720461 56720215 ID=Msa0127440-mRNA-1:five_prime_utr;Parent=Msa0127440-mRNA-1
chr1_3 CDS 56720176 56720214 56720176 ID=Msa0127440-mRNA-1:cds;Parent=Msa0127440-mRNA-1
chr1_3 CDS 56718606 56719604 56718606 ID=Msa0127440-mRNA-1:cds;Parent=Msa0127440-mRNA-1
chr1_3 three_prime_UTR 56717834 56718605 56717834 ID=Msa0127440-mRNA-1:three_prime_utr;Parent=Msa0127440-mRNA-1
Gene Sequence

>Msa0127440

ATGGCTGGAAGTAACCAACTCAACCCCAATGATTCAAAGATGGTGGTTCCATTGAACATGTGGGTTTTGATCTCCAATTTCAAGTTAGCATACAATCTTCTCCGTCGTCCTGATGGAACTTTCAACCGTGACTTGGCAGAGTTTCTTGATCGGAAAGTTCCAGCAAATGCGAATCCTGTGGATGGTGTTTTCTCTTTTGATGTTATTGTTGATCGGGAAACCAATCTCCTTACTCGAATCTACCGTCCTGTTGAGGGAGAAGAACAACATGTGAACATTGTTGACCTTGAGAAGCCTGTTACTGCTGAGGTTCTTCCTGTTGTCATGTTCTTCCACGGTGGAAGTTTTGCACATTCTTCGGCTAACAGTGCTATTTATGATACATTGTGTCGTCGATTGGTTGGTATTTGTAATGCTGTTGTCGTCTCGGTGAATTATAGGCGTGCGCCTGAAAATAGGTATCCTTGCGCTTATGAAGATGGGTGGAAAGCTGTTAAATGGGTTAACTCTAGAACTTGGCTGCAGAGTAAAAAAGATAGCAAGGTTCATATCTACATGGTTGGTGATAGCTCGGGCGGGAACATTGTGCACCATGTTGCATTGAAAGCATTGGACTCTGGGATTCCGGTGTTGGGAAATATACTGCTAAACCCTTTGTTTGGCGGGGAAGAAAGAACAGAATCCGAAAAGCGTCTTGATGGGAGATATTTTGTCAGAGTGAAAGATAGAGACTGGTATTGGAGAGCTTTTCTTCCTGAAGGGGAAGACAGAGATCATCACGCGTGTAACCCTTTTGGTCCAAAAGGTCGAAGCCTTGATGGGGTTGCCTTTCCTAAGAGTCTTGTGGTGGTTGCTGGTTTGGATCTTGTTCAGGATTGGCAATTGGGATATGCCAAAGGACTTGAGAAAGCTGGACAAAATGTGAAGTTGCTATTTCTCGAGCAAGCCACGGTTGGGTTTTACTTGCTACCAAATAATGAGCATTTCTCTGTTGTCATGGATGAGATAAAACATTTTGTCAACTCTGACTGTTCATAG

Protein sequence

>Msa0127440

MAGSNQLNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRPVEGEEQHVNIVDLEKPVTAEVLPVVMFFHGGSFAHSSANSAIYDTLCRRLVGICNAVVVSVNYRRAPENRYPCAYEDGWKAVKWVNSRTWLQSKKDSKVHIYMVGDSSGGNIVHHVALKALDSGIPVLGNILLNPLFGGEERTESEKRLDGRYFVRVKDRDWYWRAFLPEGEDRDHHACNPFGPKGRSLDGVAFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQNVKLLFLEQATVGFYLLPNNEHFSVVMDEIKHFVNSDCS*