AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1112610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112610 MtrunA17_Chr7g0247431 89.305 374 12 1 1 374 1 346 0.0 655
Msa1112610 MtrunA17_Chr8g0349091 58.730 378 117 11 1 374 1 343 1.11e-113 335
Msa1112610 MtrunA17_Chr5g0397551 42.368 380 154 15 1 374 1 321 3.56e-68 218
Msa1112610 MtrunA17_Chr8g0386741 37.403 385 196 9 1 374 1 351 2.25e-50 172
Msa1112610 MtrunA17_Chr4g0054661 42.152 223 87 4 89 304 73 260 2.49e-44 156
Msa1112610 MtrunA17_Chr1g0179461 38.739 222 99 4 89 301 69 262 2.62e-43 154
Msa1112610 MtrunA17_Chr7g0245841 40.385 260 117 4 85 343 56 278 2.93e-42 150
Msa1112610 MtrunA17_Chr1g0188211 38.077 260 115 4 88 330 48 278 1.82e-39 143
Msa1112610 MtrunA17_Chr4g0056761 40.164 244 108 6 80 313 61 276 1.70e-35 132
Msa1112610 MtrunA17_Chr8g0351761 40.586 239 104 4 87 318 69 276 2.02e-35 132
Msa1112610 MtrunA17_Chr5g0398621 35.897 234 105 4 89 318 46 238 6.72e-34 125
Msa1112610 MtrunA17_Chr6g0476061 36.032 247 115 5 82 315 44 260 2.50e-29 115
Msa1112610 MtrunA17_Chr7g0274821 35.169 236 115 4 86 320 71 269 1.74e-25 105
Msa1112610 MtrunA17_Chr1g0190011 38.411 151 61 3 151 300 103 222 5.06e-23 98.2
Msa1112610 MtrunA17_Chr4g0027371 34.104 173 82 4 146 315 8 151 5.32e-19 85.5
Msa1112610 MtrunA17_Chr4g0027331 36.054 147 61 5 159 301 21 138 1.61e-17 78.6
Msa1112610 MtrunA17_Chr1g0165101 31.034 232 106 8 87 300 83 278 1.77e-17 82.8
Msa1112610 MtrunA17_Chr6g0476241 31.489 235 115 7 83 316 114 303 7.67e-16 77.4
Msa1112610 MtrunA17_Chr1g0168121 32.386 176 85 3 125 300 40 181 9.36e-14 70.9
Msa1112610 MtrunA17_Chr5g0417581 28.859 149 74 4 148 294 10 128 9.45e-14 69.3
Msa1112610 MtrunA17_Chr4g0027301 31.169 154 75 4 147 297 16 141 2.22e-13 67.0
Msa1112610 MtrunA17_Chr5g0427311 30.519 154 77 3 148 300 71 195 4.03e-12 65.5
Msa1112610 MtrunA17_Chr3g0112131 34.043 141 62 2 160 300 109 218 1.29e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112610 AT2G45850.1 46.512 387 155 10 1 374 1 348 6.80e-83 256
Msa1112610 AT2G45850.2 46.512 387 155 10 1 374 1 348 6.80e-83 256
Msa1112610 AT3G61310.1 43.038 395 163 13 1 374 1 354 5.73e-70 223
Msa1112610 AT2G45850.3 45.981 311 123 6 1 300 1 277 3.59e-60 196
Msa1112610 AT1G63470.1 40.984 305 132 7 88 374 104 378 3.76e-55 186
Msa1112610 AT1G63480.2 36.683 398 191 12 1 374 1 361 1.02e-51 176
Msa1112610 AT1G63480.1 36.683 398 191 12 1 374 1 361 1.02e-51 176
Msa1112610 AT1G63480.5 36.735 392 187 12 7 374 1 355 1.03e-50 173
Msa1112610 AT1G63480.7 36.735 392 187 12 7 374 1 355 1.03e-50 173
Msa1112610 AT1G63480.4 36.735 392 187 12 7 374 1 355 1.03e-50 173
Msa1112610 AT1G63480.3 36.735 392 187 12 7 374 1 355 1.03e-50 173
Msa1112610 AT1G63480.6 36.735 392 187 12 7 374 1 355 1.03e-50 173
Msa1112610 AT4G12080.1 36.656 311 133 9 84 371 84 353 5.88e-47 164
Msa1112610 AT4G25320.1 38.397 237 106 3 84 308 81 289 4.01e-44 157
Msa1112610 AT2G33620.1 42.986 221 86 7 86 301 94 279 6.02e-42 150
Msa1112610 AT2G33620.4 42.986 221 86 7 86 301 94 279 6.02e-42 150
Msa1112610 AT2G33620.2 42.986 221 86 7 86 301 94 279 6.02e-42 150
Msa1112610 AT2G33620.3 42.986 221 86 7 86 301 94 279 6.02e-42 150
Msa1112610 AT4G17950.1 37.313 268 100 9 86 323 128 357 3.84e-39 145
Msa1112610 AT5G51590.1 36.694 248 97 4 88 303 77 296 9.32e-39 143
Msa1112610 AT5G62260.1 35.802 243 110 5 88 313 75 288 1.44e-36 137
Msa1112610 AT5G62260.3 35.802 243 110 5 88 313 75 288 1.44e-36 137
Msa1112610 AT4G22770.2 38.559 236 105 5 88 312 71 277 1.75e-36 135
Msa1112610 AT4G22770.1 38.559 236 105 5 88 312 71 277 1.75e-36 135
Msa1112610 AT5G46640.1 39.919 248 98 5 88 320 101 312 2.63e-35 133
Msa1112610 AT5G62260.2 36.000 225 98 5 88 295 75 270 1.97e-32 123
Msa1112610 AT3G04590.1 35.622 233 93 5 86 306 102 289 4.64e-32 123
Msa1112610 AT3G04590.2 36.250 240 82 5 86 306 102 289 2.23e-31 123
Msa1112610 AT4G00200.2 37.398 246 102 5 89 322 56 261 2.26e-29 115
Msa1112610 AT4G00200.1 37.398 246 102 5 89 322 56 261 2.26e-29 115
Msa1112610 AT1G76500.1 31.551 187 102 4 114 300 60 220 1.49e-13 71.2
Msa1112610 AT2G36560.1 29.237 236 113 8 80 313 51 234 4.40e-13 70.9
Msa1112610 AT3G55560.1 36.620 142 60 3 160 301 118 229 1.68e-11 65.1
Msa1112610 AT3G04570.1 32.184 174 92 3 127 300 80 227 1.82e-11 65.1

Find 138 sgRNAs with CRISPR-Local

Find 545 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGTGAGCCTTCAATTTC+AGG 0.181190 7_3:-58569683 Msa1112610:CDS
TGATGATTGGGAGCTTTCTT+TGG 0.202344 7_3:-58567072 Msa1112610:CDS
CCTCGGTTGGGTTGCGATAT+CGG 0.207340 7_3:+58574878 None:intergenic
ATAAAATTATTTGTCATAAA+TGG 0.211539 7_3:+58566543 None:intergenic
GGACTAAGTATTTCCCTTCT+TGG 0.226477 7_3:-58567474 Msa1112610:CDS
ATCTGGTTGCATAAAATTCT+AGG 0.229823 7_3:+58574787 None:intergenic
CCTCCACCCATGATTTCATT+AGG 0.234838 7_3:-58566698 Msa1112610:three_prime_UTR
CAATGAAAGCAAATTGAAAA+AGG 0.258224 7_3:+58574682 None:intergenic
AAACAACAATTGGCTTCTTT+TGG 0.260196 7_3:-58572870 Msa1112610:intron
GGTTCTGATGGCCGCGTCTT+TGG 0.261926 7_3:-58567453 Msa1112610:CDS
GATGATTGGGAGCTTTCTTT+GGG 0.283569 7_3:-58567071 Msa1112610:CDS
CTTTCTCTCTCTAGACAAAA+AGG 0.291744 7_3:+58574820 None:intergenic
TGTTACGTGCCTACTGAAAA+TGG 0.318751 7_3:-58567519 Msa1112610:CDS
AGAGGAAGGCCGAGGAAATA+TGG 0.336868 7_3:-58573011 Msa1112610:CDS
CTCCACCCATGATTTCATTA+GGG 0.341000 7_3:-58566697 Msa1112610:three_prime_UTR
ATTGGTAAGGATACATTTCA+TGG 0.346145 7_3:-58566620 Msa1112610:three_prime_UTR
GGTCATACTGTTGTTCCGTC+TGG 0.360946 7_3:-58573053 Msa1112610:CDS
AGCATCGCGTCAGATGGATA+TGG 0.362505 7_3:-58566891 Msa1112610:CDS
CAGCCTGACATGCTCATTAT+CGG 0.372820 7_3:+58567540 None:intergenic
TACTTTCTCTCTCCTCGGTT+GGG 0.377297 7_3:+58574866 None:intergenic
CAGAGAGTACTACCTGGTTC+TGG 0.381741 7_3:-58573230 Msa1112610:CDS
AATTTGTTCACAGGTGGAAT+TGG 0.384759 7_3:-58574598 Msa1112610:five_prime_UTR
TGCACACAAAAGTCCTTATC+TGG 0.391496 7_3:+58574770 None:intergenic
GAATAGAGAAGATGATGAAA+AGG 0.395347 7_3:-58568161 Msa1112610:CDS
AGAGAGCCACCTGAAATTGA+AGG 0.403246 7_3:+58569674 None:intergenic
GAGTTGATGTCTGGTTCAGC+TGG 0.406727 7_3:-58570667 Msa1112610:CDS
GTCATACTGTTGTTCCGTCT+GGG 0.408582 7_3:-58573052 Msa1112610:CDS
CATATAGTAAGATGCAGAAT+TGG 0.410161 7_3:+58573256 None:intergenic
TGTTGTTTCTTCCCACTCCC+AGG 0.412423 7_3:+58572885 None:intergenic
TGCTGCTGACCAAGGACTTA+AGG 0.412506 7_3:+58566910 None:intergenic
GAAGGTTTCATGTTCCTGAT+TGG 0.423100 7_3:-58566638 Msa1112610:three_prime_UTR
GGACGCCCTCTCCCTCGTTT+CGG 0.424030 7_3:+58572909 None:intergenic
CTTTCTTTGGGGTAGATTGA+AGG 0.434019 7_3:-58567059 Msa1112610:CDS
TCACGATTGTAGGTGATGAT+TGG 0.434323 7_3:-58567085 Msa1112610:intron
TTGTAAGCAATAATATCAAA+AGG 0.434547 7_3:+58574559 None:intergenic
ATTTAGTAGTGATGAAAGAA+TGG 0.435779 7_3:-58566783 Msa1112610:three_prime_UTR
ATACTTTCTCTCTCCTCGGT+TGG 0.440668 7_3:+58574865 None:intergenic
TGAGAACCCTAATGAAATCA+TGG 0.444366 7_3:+58566691 None:intergenic
GAAATGTATCCTTACCAATC+AGG 0.447763 7_3:+58566624 None:intergenic
CATGGATCACGGGGACCATA+TGG 0.448828 7_3:-58573285 Msa1112610:CDS
ATTTCCCTTCTTGGTTCTGA+TGG 0.452001 7_3:-58567465 Msa1112610:CDS
CACGATTGTAGGTGATGATT+GGG 0.453280 7_3:-58567084 Msa1112610:intron
CAACCTCATCCTTAAGTCCT+TGG 0.455300 7_3:-58566919 Msa1112610:CDS
TTACTAGATGGTGTTGGACT+TGG 0.455387 7_3:+58572957 None:intergenic
CCTAGCTTCAATTTGTTCAC+AGG 0.457595 7_3:-58574607 Msa1112610:five_prime_UTR
TGTTGCTGCCAGTCCCGTCC+AGG 0.459424 7_3:-58567409 Msa1112610:intron
ATGTCCACTGTATTTAATAG+TGG 0.463098 7_3:+58568118 None:intergenic
CTGGATTGAAATGGTAGATT+GGG 0.463800 7_3:+58573158 None:intergenic
TAAAATAACCTGGACGGGAC+TGG 0.464159 7_3:+58567401 None:intergenic
CCACCAATGCTGGATTGAAA+TGG 0.467476 7_3:+58573149 None:intergenic
GGCGGTCCGAAACGAGGGAG+AGG 0.467856 7_3:-58572915 Msa1112610:CDS
TGCATAAAATTCTAGGGCTA+TGG 0.470647 7_3:+58574794 None:intergenic
TCATAGTTTCTTGTTAAAGA+AGG 0.472475 7_3:-58573324 Msa1112610:five_prime_UTR
AAAGTAAATGCATGGATCAC+GGG 0.473691 7_3:-58573295 Msa1112610:exon
CAGAATTGGATAACGCCATA+TGG 0.473958 7_3:+58573270 None:intergenic
GCTGGATTGAAATGGTAGAT+TGG 0.474439 7_3:+58573157 None:intergenic
TTAGTATATTTGAATATTGG+AGG 0.475558 7_3:-58573347 Msa1112610:five_prime_UTR
ATGTCTGGTTCAGCTGGGAC+GGG 0.475635 7_3:-58570661 Msa1112610:CDS
CGCTGACAGAGTTGTGTCAT+TGG 0.476854 7_3:-58572988 Msa1112610:CDS
CAATCCAGCATTGGTGGTGG+TGG 0.477009 7_3:-58573143 Msa1112610:CDS
TTTCCGATAATGAGCATGTC+AGG 0.479255 7_3:-58567543 Msa1112610:CDS
AGCTTGCTCTATTCTGATGT+TGG 0.480650 7_3:+58566754 None:intergenic
CCAACACCATCTAGTAATCC+TGG 0.482215 7_3:-58572951 Msa1112610:CDS
GTTGTTTCTTCCCACTCCCA+GGG 0.482907 7_3:+58572886 None:intergenic
CGCGTCTTTGGTGGAGCAGT+TGG 0.485980 7_3:-58567441 Msa1112610:CDS
ACTACCACCACCACCAATGC+TGG 0.491763 7_3:+58573139 None:intergenic
GTCTTTGGTGGAGCAGTTGG+TGG 0.493504 7_3:-58567438 Msa1112610:CDS
GATGTCTGGTTCAGCTGGGA+CGG 0.495190 7_3:-58570662 Msa1112610:CDS
CCATTTCAATCCAGCATTGG+TGG 0.497348 7_3:-58573149 Msa1112610:CDS
TCTGATGGCCGCGTCTTTGG+TGG 0.502729 7_3:-58567450 Msa1112610:CDS
TTTCATGTTCCTGATTGGTA+AGG 0.506847 7_3:-58566633 Msa1112610:three_prime_UTR
CGCGGCCATCAGAACCAAGA+AGG 0.508032 7_3:+58567460 None:intergenic
AGGTGGCTCTCTCAAATATG+AGG 0.512730 7_3:-58569663 Msa1112610:intron
GGCATTTGAAAGTAAATGCA+TGG 0.517767 7_3:-58573303 Msa1112610:exon
AGCTTCAATTTGTTCACAGG+TGG 0.518347 7_3:-58574604 Msa1112610:five_prime_UTR
GTCAGCAGCATCGCGTCAGA+TGG 0.520208 7_3:-58566897 Msa1112610:CDS
ATATATACTTTCTCTCTCCT+CGG 0.522920 7_3:+58574861 None:intergenic
CTTAGAGTGTTCAAATGAGA+TGG 0.523221 7_3:-58566465 Msa1112610:three_prime_UTR
GAATATAAAATAACCTGGAC+GGG 0.525441 7_3:+58567396 None:intergenic
TCTGGTTGCATAAAATTCTA+GGG 0.528169 7_3:+58574788 None:intergenic
TTTCGGACCGCCTTGCGTCA+CGG 0.531390 7_3:+58572926 None:intergenic
TCATATTTACAATATTGTGT+TGG 0.533823 7_3:-58566491 Msa1112610:three_prime_UTR
AAAGGAAGAGAGGAAGGCCG+AGG 0.541174 7_3:-58573019 Msa1112610:CDS
AACACTACCGCTAGAATCAT+CGG 0.542072 7_3:-58573105 Msa1112610:CDS
GAGACTGTGAAAAGGAAGAG+AGG 0.545044 7_3:-58573029 Msa1112610:CDS
CTACCATTTCAATCCAGCAT+TGG 0.548911 7_3:-58573152 Msa1112610:CDS
TCAGGTTGTGCTCCAGAACC+AGG 0.551315 7_3:+58573218 None:intergenic
TGTAAGCAATAATATCAAAA+GGG 0.552189 7_3:+58574560 None:intergenic
CAAGGACTTAAGGATGAGGT+TGG 0.552528 7_3:+58566920 None:intergenic
TTTCAATCCAGCATTGGTGG+TGG 0.552966 7_3:-58573146 Msa1112610:CDS
GAAAGTAAATGCATGGATCA+CGG 0.553146 7_3:-58573296 Msa1112610:exon
GAGTGGGAAGAAACAACAAT+TGG 0.556408 7_3:-58572880 Msa1112610:CDS
GAAATGCTATTCAGTGCAGC+TGG 0.557516 7_3:+58566962 None:intergenic
CCTAATGAAATCATGGGTGG+AGG 0.564457 7_3:+58566698 None:intergenic
CCTGTGAACAAATTGAAGCT+AGG 0.565629 7_3:+58574607 None:intergenic
CTGTGAAAAGGAAGAGAGGA+AGG 0.568746 7_3:-58573025 Msa1112610:CDS
CATGTCATCTACATTGCAAG+TGG 0.576379 7_3:-58570628 Msa1112610:CDS
TCATCGGCAATTTCATCTCA+AGG 0.576639 7_3:-58573089 Msa1112610:CDS
GGCTCCTCACGGAACCGAGA+TGG 0.579641 7_3:-58567498 Msa1112610:CDS
CGTGAGCCTTCAATTTCAGG+TGG 0.582446 7_3:-58569680 Msa1112610:CDS
TCTCATTTGAACACTCTAAG+TGG 0.582614 7_3:+58566468 None:intergenic
AGAATATAAAATAACCTGGA+CGG 0.583629 7_3:+58567395 None:intergenic
ACGGTTCCAGGATTACTAGA+TGG 0.584014 7_3:+58572945 None:intergenic
GCGGCCATCAGAACCAAGAA+GGG 0.584159 7_3:+58567461 None:intergenic
CTGTCAGCGCCATATTTCCT+CGG 0.584925 7_3:+58573002 None:intergenic
GCGGTCCGAAACGAGGGAGA+GGG 0.589994 7_3:-58572914 Msa1112610:CDS
CGTCTGGGGAGACTGTGAAA+AGG 0.590596 7_3:-58573037 Msa1112610:CDS
GCATTAAATCAATGTCAGCA+TGG 0.592021 7_3:+58566861 None:intergenic
TGACGCGATGCTGCTGACCA+AGG 0.593942 7_3:+58566902 None:intergenic
CCAGGATTACTAGATGGTGT+TGG 0.598387 7_3:+58572951 None:intergenic
CATTAAATCAATGTCAGCAT+GGG 0.598597 7_3:+58566862 None:intergenic
TCCTCACGGAACCGAGATGG+TGG 0.600178 7_3:-58567495 Msa1112610:CDS
CTCGGCGAAACATGTAACTC+AGG 0.601454 7_3:+58573200 None:intergenic
GGTGGTGGTGGTAGTAACAT+TGG 0.610075 7_3:-58573131 Msa1112610:CDS
AATCCTGGAACCGTGACGCA+AGG 0.612484 7_3:-58572936 Msa1112610:CDS
GAGAACCCTAATGAAATCAT+GGG 0.613235 7_3:+58566692 None:intergenic
TCATACTGTTGTTCCGTCTG+GGG 0.616551 7_3:-58573051 Msa1112610:CDS
ACGGGACTGGCAGCAACAAG+CGG 0.620950 7_3:+58567414 None:intergenic
TTGTTTCTTCCCACTCCCAG+GGG 0.621601 7_3:+58572887 None:intergenic
GAAAGCTCAGAGGATGCAGA+AGG 0.626942 7_3:-58567019 Msa1112610:CDS
CTACTGAAAATGGCTCCTCA+CGG 0.628279 7_3:-58567509 Msa1112610:CDS
AAATACTTAGTCCACCATCT+CGG 0.629124 7_3:+58567484 None:intergenic
AGTTGATGTCTGGTTCAGCT+GGG 0.632427 7_3:-58570666 Msa1112610:CDS
TGACCAAGGACTTAAGGATG+AGG 0.635165 7_3:+58566916 None:intergenic
AAGTAAATGCATGGATCACG+GGG 0.639754 7_3:-58573294 Msa1112610:exon
ATGATTGGGAGCTTTCTTTG+GGG 0.643354 7_3:-58567070 Msa1112610:CDS
GCTGTTGAATCAGATCATCA+AGG 0.649232 7_3:-58566995 Msa1112610:CDS
AACCCTAATGAAATCATGGG+TGG 0.650732 7_3:+58566695 None:intergenic
TCTCAAGGTGTCAATGTGAG+TGG 0.652035 7_3:-58573074 Msa1112610:CDS
CTTGCAATGTAGATGACATG+AGG 0.652776 7_3:+58570631 None:intergenic
CAACTGCTCCACCAAAGACG+CGG 0.658039 7_3:+58567442 None:intergenic
GCTGACATTGATTTAATGCG+TGG 0.670344 7_3:-58566857 Msa1112610:CDS
TTAGACAGTTGATTAAAACT+CGG 0.670482 7_3:+58573182 None:intergenic
ATGCAGCAGAGAGTACTACC+TGG 0.672500 7_3:-58573236 Msa1112610:CDS
TCCACCATCTCGGTTCCGTG+AGG 0.687156 7_3:+58567494 None:intergenic
TGTTTCTTCCCACTCCCAGG+GGG 0.696825 7_3:+58572888 None:intergenic
CCTGGAACCGTGACGCAAGG+CGG 0.700364 7_3:-58572933 Msa1112610:CDS
GAAATTGCCGATGATTCTAG+CGG 0.710270 7_3:+58573098 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAAATTTTTTAA+GGG + chr7_3:58572947-58572966 None:intergenic 0.0%
!! AGATAAACAAAAAAAAATAT+GGG + chr7_3:58567639-58567658 None:intergenic 10.0%
!! AAGATAAACAAAAAAAAATA+TGG + chr7_3:58567640-58567659 None:intergenic 10.0%
!!! TTTTTAGTATATTTGAATAT+TGG - chr7_3:58567984-58568003 Msa1112610:intron 10.0%
!! ATTTAAATAGGTAAAATATA+AGG + chr7_3:58571089-58571108 None:intergenic 10.0%
!!! AAGTTGATATTTATTTAAAT+AGG + chr7_3:58571101-58571120 None:intergenic 10.0%
!! ATATATACATTTATCTTAAA+AGG - chr7_3:58571304-58571323 Msa1112610:intron 10.0%
!! ATAAAATTATTTGTCATAAA+TGG + chr7_3:58574794-58574813 None:intergenic 10.0%
!!! TTTGAATCAATTTTTCAAAT+TGG - chr7_3:58568564-58568583 Msa1112610:intron 15.0%
!!! GTATGTTTAAGTTTTATAAA+GGG + chr7_3:58568955-58568974 None:intergenic 15.0%
!!! TGTATGTTTAAGTTTTATAA+AGG + chr7_3:58568956-58568975 None:intergenic 15.0%
!! TGTATATCTTCTTATTATTA+TGG - chr7_3:58569208-58569227 Msa1112610:intron 15.0%
!! ACTAATCAGTATAAATATTT+AGG + chr7_3:58569323-58569342 None:intergenic 15.0%
!!! AACTTACTTTGAATTTTTAT+TGG - chr7_3:58569372-58569391 Msa1112610:intron 15.0%
!!! ACTTACTTTGAATTTTTATT+GGG - chr7_3:58569373-58569392 Msa1112610:intron 15.0%
!! ATAAAAAAAACAAAAACAAC+TGG - chr7_3:58569445-58569464 Msa1112610:intron 15.0%
!!! ATAAGTATGATTGTTTTTAA+GGG - chr7_3:58569654-58569673 Msa1112610:intron 15.0%
!!! TCATTTTAAATTATGAATGA+AGG - chr7_3:58570165-58570184 Msa1112610:intron 15.0%
!!! CATTTTAAATTATGAATGAA+GGG - chr7_3:58570166-58570185 Msa1112610:intron 15.0%
!! AAATCTGATTACAATTAAAT+TGG - chr7_3:58570189-58570208 Msa1112610:intron 15.0%
!!! TTTTTTTCTTTCTATTAACT+TGG - chr7_3:58570743-58570762 Msa1112610:intron 15.0%
!!! TTTTATATGTTGTTAACTTT+GGG - chr7_3:58570783-58570802 Msa1112610:intron 15.0%
!! TAATTAATCAATAACTATGA+GGG + chr7_3:58571782-58571801 None:intergenic 15.0%
!! TTAATTAATCAATAACTATG+AGG + chr7_3:58571783-58571802 None:intergenic 15.0%
!!! TACAATTTAAGAATATTTTG+TGG - chr7_3:58571836-58571855 Msa1112610:intron 15.0%
!! GTTAATAAAAAAAACTAATG+AGG + chr7_3:58572181-58572200 None:intergenic 15.0%
!!! TTTAAAACAAAAAAATCGAA+TGG + chr7_3:58572203-58572222 None:intergenic 15.0%
!!! ACTTTCAATTTATTTTTTCT+GGG + chr7_3:58572361-58572380 None:intergenic 15.0%
!!! TTTTGGAAGATTTTTTTTTT+TGG - chr7_3:58573119-58573138 Msa1112610:CDS 15.0%
!!! AAGATTTTTTTTTTTGGAAA+AGG - chr7_3:58573125-58573144 Msa1112610:CDS 15.0%
!! ATGTAAACTGAAAATTAATT+AGG - chr7_3:58573365-58573384 Msa1112610:five_prime_UTR 15.0%
!! TGTAAACTGAAAATTAATTA+GGG - chr7_3:58573366-58573385 Msa1112610:five_prime_UTR 15.0%
!! TATTGAAAAATGGAAAAGAA+TGG + chr7_3:58566630-58566649 None:intergenic 20.0%
!! AATGAAAGCAAATTGAAAAA+GGG + chr7_3:58566654-58566673 None:intergenic 20.0%
!! TGTAAGCAATAATATCAAAA+GGG + chr7_3:58566777-58566796 None:intergenic 20.0%
!! TTGTAAGCAATAATATCAAA+AGG + chr7_3:58566778-58566797 None:intergenic 20.0%
!!! TTGTGTTTAAGGTTTATTAT+TGG - chr7_3:58567332-58567351 Msa1112610:intron 20.0%
!! TTGAATATAATCACATGTAT+TGG + chr7_3:58567431-58567450 None:intergenic 20.0%
!! TTTGTTTATCTTCTACTTTA+TGG - chr7_3:58567648-58567667 Msa1112610:intron 20.0%
!! AGAGTATAATGACAAATTTA+AGG + chr7_3:58567942-58567961 None:intergenic 20.0%
!! TTAGTATATTTGAATATTGG+AGG - chr7_3:58567987-58568006 Msa1112610:intron 20.0%
!!! AAGGTTGTGTTTAAAATATA+TGG - chr7_3:58568711-58568730 Msa1112610:intron 20.0%
!! TATGAAAAAGCTGAAATATA+TGG - chr7_3:58569016-58569035 Msa1112610:intron 20.0%
!!! CATAAGTATGATTGTTTTTA+AGG - chr7_3:58569653-58569672 Msa1112610:intron 20.0%
!!! CTGTTCTCTAAATTTAATTT+TGG - chr7_3:58569975-58569994 Msa1112610:intron 20.0%
!! TAATGACATGAATATCAATT+TGG - chr7_3:58570044-58570063 Msa1112610:intron 20.0%
!!! TACAATTAAATTGGTGATTA+TGG - chr7_3:58570198-58570217 Msa1112610:intron 20.0%
!! TCTATATAATTCTACAATTG+CGG + chr7_3:58570259-58570278 None:intergenic 20.0%
!! TTTAATAATCAAAGTTGCAA+TGG - chr7_3:58570497-58570516 Msa1112610:intron 20.0%
!!! GTTTTATATGTTGTTAACTT+TGG - chr7_3:58570782-58570801 Msa1112610:intron 20.0%
!! AAGATGCAAATACATTTATT+AGG + chr7_3:58571022-58571041 None:intergenic 20.0%
!! AAAAATTTGGTTGCAAATAA+CGG + chr7_3:58571196-58571215 None:intergenic 20.0%
!! TACGACATTTATGTAAATAT+TGG - chr7_3:58571503-58571522 Msa1112610:intron 20.0%
!!! AAAAATTTTGACATTTTCTC+AGG - chr7_3:58571572-58571591 Msa1112610:intron 20.0%
!! TTGTTACATAAAGACATATA+TGG - chr7_3:58571718-58571737 Msa1112610:intron 20.0%
!! GAAACTTAATTGTATAGTTA+TGG - chr7_3:58571927-58571946 Msa1112610:intron 20.0%
!! ATTGGAAAGTAATTCATAAA+CGG - chr7_3:58571960-58571979 Msa1112610:intron 20.0%
!! TGTAAACTGCAAATTATTTA+GGG + chr7_3:58572005-58572024 None:intergenic 20.0%
!! ATGTAAACTGCAAATTATTT+AGG + chr7_3:58572006-58572025 None:intergenic 20.0%
!!! ATAATTTGCAGTTTACATTT+TGG - chr7_3:58572008-58572027 Msa1112610:intron 20.0%
!! AATAGACATACATGATTTAA+TGG + chr7_3:58572232-58572251 None:intergenic 20.0%
!!! TGTGTTTATTTTGATGAATA+TGG + chr7_3:58572334-58572353 None:intergenic 20.0%
!!! GACTTTCAATTTATTTTTTC+TGG + chr7_3:58572362-58572381 None:intergenic 20.0%
!!! TAAACTGATGATTTTGAATT+GGG + chr7_3:58572411-58572430 None:intergenic 20.0%
!!! TTAAACTGATGATTTTGAAT+TGG + chr7_3:58572412-58572431 None:intergenic 20.0%
!!! GGATTGTATTTTGTTTATTT+TGG + chr7_3:58572446-58572465 None:intergenic 20.0%
!!! AGATTGAGATTCAAAATTTT+GGG + chr7_3:58572542-58572561 None:intergenic 20.0%
!! TGGATATGAAAGAAAAATTT+GGG + chr7_3:58572611-58572630 None:intergenic 20.0%
!! ATGGATATGAAAGAAAAATT+TGG + chr7_3:58572612-58572631 None:intergenic 20.0%
!! AATTTAAAAAAAAACGTTGC+TGG - chr7_3:58572953-58572972 Msa1112610:CDS 20.0%
!!! TCTCACTTATGTTTATTTTT+GGG - chr7_3:58573087-58573106 Msa1112610:CDS 20.0%
!! AGACATTAAAAAACTAATAG+AGG - chr7_3:58573273-58573292 Msa1112610:CDS 20.0%
!! GACATTAAAAAACTAATAGA+GGG - chr7_3:58573274-58573293 Msa1112610:CDS 20.0%
!! ACATTAAAAAACTAATAGAG+GGG - chr7_3:58573275-58573294 Msa1112610:CDS 20.0%
!! GTAAACTGAAAATTAATTAG+GGG - chr7_3:58573367-58573386 Msa1112610:five_prime_UTR 20.0%
!! TCTACTAAAACAAAGTAAAT+TGG - chr7_3:58573489-58573508 Msa1112610:intron 20.0%
!! TATTCAAAATATGTGCAAAA+AGG + chr7_3:58573579-58573598 None:intergenic 20.0%
!!! TTTTTGCACATATTTTGAAT+AGG - chr7_3:58573578-58573597 Msa1112610:intron 20.0%
!! CTTATAACAATTAACAACAT+AGG + chr7_3:58573706-58573725 None:intergenic 20.0%
!! CTATGTTGTTAATTGTTATA+AGG - chr7_3:58573704-58573723 Msa1112610:intron 20.0%
!! AAGTAGAATATAAAATAACC+TGG + chr7_3:58573946-58573965 None:intergenic 20.0%
!! TTGTTAACAGTGTAAATTTA+GGG + chr7_3:58574008-58574027 None:intergenic 20.0%
!! TTTGTTAACAGTGTAAATTT+AGG + chr7_3:58574009-58574028 None:intergenic 20.0%
!!! GACAATCTAAAATATTTACA+TGG - chr7_3:58574142-58574161 Msa1112610:intron 20.0%
!!! TGTGAAGAATTTTAATTTGA+AGG - chr7_3:58574678-58574697 Msa1112610:five_prime_UTR 20.0%
!! CTTGAAAGAAAAAAAAACTT+GGG - chr7_3:58574741-58574760 Msa1112610:five_prime_UTR 20.0%
!!! ATGTGATTTTTCTAATTGAA+TGG - chr7_3:58574812-58574831 Msa1112610:five_prime_UTR 20.0%
!! TCATATTTACAATATTGTGT+TGG - chr7_3:58574843-58574862 Msa1112610:five_prime_UTR 20.0%
! GAAAAAGGGTTATTGAAAAA+TGG + chr7_3:58566640-58566659 None:intergenic 25.0%
! CAATGAAAGCAAATTGAAAA+AGG + chr7_3:58566655-58566674 None:intergenic 25.0%
!! AAAAGCATAAACAATGAGAA+GGG + chr7_3:58566821-58566840 None:intergenic 25.0%
!! TAAAAGCATAAACAATGAGA+AGG + chr7_3:58566822-58566841 None:intergenic 25.0%
!! ATTTTGTGTTTCATGTATCT+GGG - chr7_3:58566854-58566873 Msa1112610:CDS 25.0%
!!! TTGTGGTCTATTTTTGTAAT+TGG - chr7_3:58567006-58567025 Msa1112610:CDS 25.0%
!!! TGTGGTCTATTTTTGTAATT+GGG - chr7_3:58567007-58567026 Msa1112610:CDS 25.0%
! TAAACACAAAGCAATTTCAA+AGG + chr7_3:58567321-58567340 None:intergenic 25.0%
! TTGAAATTGCTTTGTGTTTA+AGG - chr7_3:58567321-58567340 Msa1112610:intron 25.0%
! TTAAGGTTTATTATTGGTGT+TGG - chr7_3:58567338-58567357 Msa1112610:intron 25.0%
! TTCATAAGTAAGATGTGATA+TGG - chr7_3:58567536-58567555 Msa1112610:CDS 25.0%
! GTTAAACATGTACATGTTAT+TGG - chr7_3:58567577-58567596 Msa1112610:intron 25.0%
! AAAAAAAATATGGGAATCCA+AGG + chr7_3:58567630-58567649 None:intergenic 25.0%
! CAATCCTTCAAATCAAAATA+GGG + chr7_3:58567789-58567808 None:intergenic 25.0%
! ACAATCCTTCAAATCAAAAT+AGG + chr7_3:58567790-58567809 None:intergenic 25.0%
! AACTAGTTACAAATAATGTC+AGG - chr7_3:58567825-58567844 Msa1112610:intron 25.0%
! TCATAGTTTCTTGTTAAAGA+AGG - chr7_3:58568010-58568029 Msa1112610:intron 25.0%
! TTAGACAGTTGATTAAAACT+CGG + chr7_3:58568155-58568174 None:intergenic 25.0%
! TGCATGAAAGATATATGTAT+AGG - chr7_3:58568540-58568559 Msa1112610:intron 25.0%
! GCATGAAAGATATATGTATA+GGG - chr7_3:58568541-58568560 Msa1112610:intron 25.0%
! TTTCAAATTGGTCATGAAAT+TGG - chr7_3:58568576-58568595 Msa1112610:intron 25.0%
! AAGAAAATACTGTAACAAAC+AGG + chr7_3:58568626-58568645 None:intergenic 25.0%
! TTTCATAAGCTTAAACAAAC+AGG - chr7_3:58569184-58569203 Msa1112610:intron 25.0%
! GATTACTGAATGTAATATGT+CGG - chr7_3:58569343-58569362 Msa1112610:intron 25.0%
! ATTACTGAATGTAATATGTC+GGG - chr7_3:58569344-58569363 Msa1112610:intron 25.0%
! AAACAATCATACTTATGTAG+TGG + chr7_3:58569650-58569669 None:intergenic 25.0%
! ATCCTAATATACCCTTAAAA+TGG - chr7_3:58569684-58569703 Msa1112610:CDS 25.0%
! GTAGTGGTATTTAAAAAGTT+TGG - chr7_3:58569918-58569937 Msa1112610:intron 25.0%
!! GCATTTAAGTTCAAATGATT+TGG - chr7_3:58570082-58570101 Msa1112610:intron 25.0%
!!! TTAAGTGGTTACTTATTTTC+AGG - chr7_3:58570643-58570662 Msa1112610:CDS 25.0%
! AAAATTTGCATATCAACACA+CGG + chr7_3:58570901-58570920 None:intergenic 25.0%
! CATATCAACACACATTTATT+AGG + chr7_3:58570936-58570955 None:intergenic 25.0%
! CATATCAACACACATTTATT+AGG + chr7_3:58570936-58570955 None:intergenic 25.0%
! ATAAGGATTCTTATGTTTCA+GGG + chr7_3:58571072-58571091 None:intergenic 25.0%
! TATAAGGATTCTTATGTTTC+AGG + chr7_3:58571073-58571092 None:intergenic 25.0%
!! GTTATTTGCAACCAAATTTT+TGG - chr7_3:58571195-58571214 Msa1112610:intron 25.0%
! ATCAATATCATCATAACTCT+TGG + chr7_3:58571355-58571374 None:intergenic 25.0%
! AGTGAAGAAGAAAATAATGT+AGG - chr7_3:58571384-58571403 Msa1112610:intron 25.0%
! AGAAGAAAATAATGTAGGAA+AGG - chr7_3:58571389-58571408 Msa1112610:intron 25.0%
! GAAGAAAATAATGTAGGAAA+GGG - chr7_3:58571390-58571409 Msa1112610:intron 25.0%
! AAGAAAATAATGTAGGAAAG+GGG - chr7_3:58571391-58571410 Msa1112610:intron 25.0%
! CAAAAGCTTACATGAAAAAT+TGG + chr7_3:58571870-58571889 None:intergenic 25.0%
! TTAATTGTATAGTTATGGCA+TGG - chr7_3:58571932-58571951 Msa1112610:intron 25.0%
! GTAAACTGCAAATTATTTAG+GGG + chr7_3:58572004-58572023 None:intergenic 25.0%
!! ATGTGAGTTTTACGATTTAT+GGG + chr7_3:58572035-58572054 None:intergenic 25.0%
!! AATGTGAGTTTTACGATTTA+TGG + chr7_3:58572036-58572055 None:intergenic 25.0%
!! AAATCGTAAAACTCACATTT+TGG - chr7_3:58572037-58572056 Msa1112610:intron 25.0%
! AAAAAAACTAATGAGGTCTT+TGG + chr7_3:58572174-58572193 None:intergenic 25.0%
! GAAGAAAGGTTAAAAAGATA+AGG + chr7_3:58572279-58572298 None:intergenic 25.0%
!!! TTTTCAAGATTTATGTTGCT+GGG + chr7_3:58572476-58572495 None:intergenic 25.0%
!!! AGATTCAAAATTTTGGGTTA+TGG + chr7_3:58572536-58572555 None:intergenic 25.0%
!! GAGATTGAGATTCAAAATTT+TGG + chr7_3:58572543-58572562 None:intergenic 25.0%
!! TTCAGATTCAACATTTTGTT+GGG + chr7_3:58572653-58572672 None:intergenic 25.0%
!!! TTTTTTTTGACGTTTGTTGT+TGG - chr7_3:58572899-58572918 Msa1112610:CDS 25.0%
! ATTTGGAGAAAGAAATTTGA+AGG - chr7_3:58572976-58572995 Msa1112610:CDS 25.0%
!!! GTCTCACTTATGTTTATTTT+TGG - chr7_3:58573086-58573105 Msa1112610:CDS 25.0%
! GATGATGAAAAGGAAAAATT+AGG - chr7_3:58573183-58573202 Msa1112610:CDS 25.0%
! ATTCAAGAATGTGTTTATGA+AGG + chr7_3:58573411-58573430 None:intergenic 25.0%
! TGTATGCAAACATATATGAT+TGG - chr7_3:58573444-58573463 Msa1112610:intron 25.0%
! GTATGCAAACATATATGATT+GGG - chr7_3:58573445-58573464 Msa1112610:intron 25.0%
! TATGCAAACATATATGATTG+GGG - chr7_3:58573446-58573465 Msa1112610:intron 25.0%
! TATGTGCAAAAAGGTAATAT+AGG + chr7_3:58573570-58573589 None:intergenic 25.0%
!!! TTTAAGCACATATTTTGAGT+AGG - chr7_3:58573630-58573649 Msa1112610:intron 25.0%
!!! ATATATTTTAATTGCCACCT+TGG - chr7_3:58573747-58573766 Msa1112610:intron 25.0%
! AGAATATAAAATAACCTGGA+CGG + chr7_3:58573942-58573961 None:intergenic 25.0%
! ACTTAAATCACACATATGAT+TGG + chr7_3:58574038-58574057 None:intergenic 25.0%
! ATTTAGTAGTGATGAAAGAA+TGG - chr7_3:58574551-58574570 Msa1112610:intron 25.0%
!!! AGTTTTTTTTTCTTTCAAGC+AGG + chr7_3:58574740-58574759 None:intergenic 25.0%
! GCTTGAAAGAAAAAAAAACT+TGG - chr7_3:58574740-58574759 Msa1112610:five_prime_UTR 25.0%
ATATATACTTTCTCTCTCCT+CGG + chr7_3:58566476-58566495 None:intergenic 30.0%
TTTCTCTCTCTAGACAAAAA+GGG + chr7_3:58566516-58566535 None:intergenic 30.0%
TCTGGTTGCATAAAATTCTA+GGG + chr7_3:58566549-58566568 None:intergenic 30.0%
ATCTGGTTGCATAAAATTCT+AGG + chr7_3:58566550-58566569 None:intergenic 30.0%
! GAATTTTATGCAACCAGATA+AGG - chr7_3:58566551-58566570 Msa1112610:three_prime_UTR 30.0%
! CATTTTGTGTTTCATGTATC+TGG - chr7_3:58566853-58566872 Msa1112610:CDS 30.0%
! TTTTGTGTTTCATGTATCTG+GGG - chr7_3:58566855-58566874 Msa1112610:CDS 30.0%
TGACATAAAGTTACAACCTT+TGG + chr7_3:58566915-58566934 None:intergenic 30.0%
!!! GTGGTCTATTTTTGTAATTG+GGG - chr7_3:58567008-58567027 Msa1112610:CDS 30.0%
! ATTTTTGTAATTGGGGTATG+TGG - chr7_3:58567015-58567034 Msa1112610:CDS 30.0%
! TCGACATTGGTAATAATTAG+AGG - chr7_3:58567100-58567119 Msa1112610:intron 30.0%
! ACATTGGTAATAATTAGAGG+AGG - chr7_3:58567103-58567122 Msa1112610:intron 30.0%
AACATAATTACTTGTCGTGT+CGG - chr7_3:58567140-58567159 Msa1112610:intron 30.0%
!!! ATGGAAGGTTGAGTTTTATT+TGG - chr7_3:58567292-58567311 Msa1112610:intron 30.0%
TAAAGACTGCATATTGAACA+TGG + chr7_3:58567379-58567398 None:intergenic 30.0%
ATGTACATGTTATTGGATAG+TGG - chr7_3:58567584-58567603 Msa1112610:intron 30.0%
TATCTTGTCTTCTACATTGT+TGG - chr7_3:58567672-58567691 Msa1112610:intron 30.0%
TACATGAGAAAGAAAGTGAA+AGG + chr7_3:58567720-58567739 None:intergenic 30.0%
CAGTTAAAGTTTCTCTTTGA+TGG + chr7_3:58567756-58567775 None:intergenic 30.0%
CATATAGTAAGATGCAGAAT+TGG + chr7_3:58568081-58568100 None:intergenic 30.0%
!! AAACAACAATTGGCTTCTTT+TGG - chr7_3:58568464-58568483 Msa1112610:intron 30.0%
GATTCTTACATTGTCAATAG+CGG - chr7_3:58569495-58569514 Msa1112610:intron 30.0%
!! CTCCATTTTAAGGGTATATT+AGG + chr7_3:58569689-58569708 None:intergenic 30.0%
ATAATTCTACAATTGCGGAA+AGG + chr7_3:58570254-58570273 None:intergenic 30.0%
CAGTGATTTCTACTATATTC+TGG + chr7_3:58570318-58570337 None:intergenic 30.0%
TCTTTATCTGCACTTTCTTA+TGG - chr7_3:58570619-58570638 Msa1112610:intron 30.0%
! ACTTGGATTTATCTCTGTTT+TGG - chr7_3:58570760-58570779 Msa1112610:intron 30.0%
! AACTTTGGGAAGAAACTATA+TGG - chr7_3:58570797-58570816 Msa1112610:intron 30.0%
ACTATATGGAAAAGAGAGAA+AGG - chr7_3:58570811-58570830 Msa1112610:intron 30.0%
AGATGTCGTTATGAAATTCT+GGG + chr7_3:58571433-58571452 None:intergenic 30.0%
! GATTGATTTAAGTGTGTCAA+AGG - chr7_3:58571479-58571498 Msa1112610:intron 30.0%
AAACGGCTTAATTGCATAAA+TGG - chr7_3:58571977-58571996 Msa1112610:intron 30.0%
CATTTGGGGGTTAAATTTAA+CGG + chr7_3:58572101-58572120 None:intergenic 30.0%
TTAAAAAGATAAGGTGTAGG+TGG + chr7_3:58572270-58572289 None:intergenic 30.0%
AGGTTAAAAAGATAAGGTGT+AGG + chr7_3:58572273-58572292 None:intergenic 30.0%
AATATGGTAAAGATGAAGAG+GGG + chr7_3:58572318-58572337 None:intergenic 30.0%
GAATATGGTAAAGATGAAGA+GGG + chr7_3:58572319-58572338 None:intergenic 30.0%
TGAATATGGTAAAGATGAAG+AGG + chr7_3:58572320-58572339 None:intergenic 30.0%
!! GTTTTCAAGATTTATGTTGC+TGG + chr7_3:58572477-58572496 None:intergenic 30.0%
!!! TTTGGGTTTTGAGATTCAAA+GGG + chr7_3:58572594-58572613 None:intergenic 30.0%
!!! ATTTGGGTTTTGAGATTCAA+AGG + chr7_3:58572595-58572614 None:intergenic 30.0%
GTTCAATAAAATTGCAGTGA+TGG + chr7_3:58572631-58572650 None:intergenic 30.0%
! CTTCAGATTCAACATTTTGT+TGG + chr7_3:58572654-58572673 None:intergenic 30.0%
! TGAAGAATGTGAAGGTTTTT+GGG - chr7_3:58572669-58572688 Msa1112610:intron 30.0%
TTCACAACCAAAACTTCAAA+CGG + chr7_3:58572792-58572811 None:intergenic 30.0%
AAAAAAAACGTTGCTGGATT+TGG - chr7_3:58572959-58572978 Msa1112610:CDS 30.0%
! TTGAAGGTTGTTGTTACAAT+TGG - chr7_3:58572992-58573011 Msa1112610:CDS 30.0%
! TGAAGGTTGTTGTTACAATT+GGG - chr7_3:58572993-58573012 Msa1112610:CDS 30.0%
!!! TTTTTGGGTGTAAACGTTTT+TGG - chr7_3:58573102-58573121 Msa1112610:CDS 30.0%
! AAAAGGATGATGAAGTTTTG+AGG - chr7_3:58573142-58573161 Msa1112610:CDS 30.0%
GAATAGAGAAGATGATGAAA+AGG - chr7_3:58573173-58573192 Msa1112610:CDS 30.0%
!! AAGGAAAAATTAGGTGTTGA+CGG - chr7_3:58573192-58573211 Msa1112610:CDS 30.0%
ATGTCCACTGTATTTAATAG+TGG + chr7_3:58573219-58573238 None:intergenic 30.0%
AAATCCTAAAACCAACAGTT+TGG + chr7_3:58573334-58573353 None:intergenic 30.0%
!!! ACTGTTGGTTTTAGGATTTA+TGG - chr7_3:58573335-58573354 Msa1112610:five_prime_UTR 30.0%
!!! CTGTTGGTTTTAGGATTTAT+GGG - chr7_3:58573336-58573355 Msa1112610:five_prime_UTR 30.0%
! GGGGTACAAATAAATTTTGA+TGG - chr7_3:58573465-58573484 Msa1112610:intron 30.0%
TCAAAAAGTCAATGATTCCA+TGG + chr7_3:58573517-58573536 None:intergenic 30.0%
CAAAATATGTGCTTAAAGCT+AGG + chr7_3:58573627-58573646 None:intergenic 30.0%
GAATATAAAATAACCTGGAC+GGG + chr7_3:58573941-58573960 None:intergenic 30.0%
AACATAAAAGTCACGATTGT+AGG - chr7_3:58574239-58574258 Msa1112610:intron 30.0%
GAAGGCAAAGAACAAAAAAA+AGG - chr7_3:58574293-58574312 Msa1112610:intron 30.0%
CATTAAATCAATGTCAGCAT+GGG + chr7_3:58574475-58574494 None:intergenic 30.0%
ATTGGTAAGGATACATTTCA+TGG - chr7_3:58574714-58574733 Msa1112610:five_prime_UTR 30.0%
CTTTCTCTCTCTAGACAAAA+AGG + chr7_3:58566517-58566536 None:intergenic 35.0%
!! TGCATAAAATTCTAGGGCTA+TGG + chr7_3:58566543-58566562 None:intergenic 35.0%
! AATTTGTTCACAGGTGGAAT+TGG - chr7_3:58566736-58566755 Msa1112610:three_prime_UTR 35.0%
GTTACAACCTTTGGCAAAAT+GGG + chr7_3:58566906-58566925 None:intergenic 35.0%
AGTTACAACCTTTGGCAAAA+TGG + chr7_3:58566907-58566926 None:intergenic 35.0%
! GATTGTGCTATGGTATTTTG+TGG - chr7_3:58566989-58567008 Msa1112610:CDS 35.0%
TTCAAACCAATGCCATAGAA+AGG + chr7_3:58567041-58567060 None:intergenic 35.0%
!!! GTTGTTGATTTTCTGAGTGT+TGG - chr7_3:58567268-58567287 Msa1112610:intron 35.0%
!! ATTATTGGTGTTGGTAAGAG+TGG - chr7_3:58567347-58567366 Msa1112610:intron 35.0%
ACTGCATATTGAACATGGAA+AGG + chr7_3:58567374-58567393 None:intergenic 35.0%
! GTATTGGTGTAGATGCTATA+TGG + chr7_3:58567415-58567434 None:intergenic 35.0%
!!! GCTACCCTATTTTGATTTGA+AGG - chr7_3:58567782-58567801 Msa1112610:intron 35.0%
TCATTATACTCTATCTGCAG+AGG - chr7_3:58567950-58567969 Msa1112610:intron 35.0%
GGCATTTGAAAGTAAATGCA+TGG - chr7_3:58568031-58568050 Msa1112610:intron 35.0%
GAAAGTAAATGCATGGATCA+CGG - chr7_3:58568038-58568057 Msa1112610:intron 35.0%
AAAGTAAATGCATGGATCAC+GGG - chr7_3:58568039-58568058 Msa1112610:intron 35.0%
CTGGATTGAAATGGTAGATT+GGG + chr7_3:58568179-58568198 None:intergenic 35.0%
AAACAGGCTCATAGTTAAAC+TGG + chr7_3:58568610-58568629 None:intergenic 35.0%
! TTTTCCTACGAGTTCACAAT+AGG + chr7_3:58568684-58568703 None:intergenic 35.0%
TAACAGAAAACAACAGCTTC+TGG + chr7_3:58568761-58568780 None:intergenic 35.0%
! CAAAAACAACTGGTTCATAC+CGG - chr7_3:58569455-58569474 Msa1112610:intron 35.0%
! AGAAACACGTGTTTTGCTAA+GGG - chr7_3:58569620-58569639 Msa1112610:intron 35.0%
! TTGCAACTGCTCCATTTTAA+GGG + chr7_3:58569698-58569717 None:intergenic 35.0%
TTAAAATGGAGCAGTTGCAA+GGG - chr7_3:58569698-58569717 Msa1112610:CDS 35.0%
AGAGTGAATGAGAAAGCAAA+GGG + chr7_3:58569818-58569837 None:intergenic 35.0%
!! CAAAACTGGTTTGAAGAAGA+GGG + chr7_3:58569872-58569891 None:intergenic 35.0%
!! ACAAAACTGGTTTGAAGAAG+AGG + chr7_3:58569873-58569892 None:intergenic 35.0%
TTACTCATACACACACATGT+GGG + chr7_3:58570408-58570427 None:intergenic 35.0%
TTTACTCATACACACACATG+TGG + chr7_3:58570409-58570428 None:intergenic 35.0%
GCACTTTCTTATGGTTTAAG+TGG - chr7_3:58570628-58570647 Msa1112610:CDS 35.0%
CAGAAATATCGACAGAAACT+AGG + chr7_3:58571124-58571143 None:intergenic 35.0%
!! GCTCTAAGAAGCCAAAAATT+TGG + chr7_3:58571209-58571228 None:intergenic 35.0%
!!! ATTTTTGGCTTCTTAGAGCA+AGG - chr7_3:58571210-58571229 Msa1112610:intron 35.0%
!! CTCTTGGTTTTTGCTTCATT+AGG + chr7_3:58571339-58571358 None:intergenic 35.0%
CAGATGTCGTTATGAAATTC+TGG + chr7_3:58571434-58571453 None:intergenic 35.0%
!!! TGAACATTTTTTTCTCCTGC+AGG - chr7_3:58571539-58571558 Msa1112610:intron 35.0%
! TTTTTGATGCAATATCCTGC+AGG + chr7_3:58571557-58571576 None:intergenic 35.0%
! CTTTGTGTTTTGTCATCTTC+TGG - chr7_3:58571609-58571628 Msa1112610:intron 35.0%
TTTCAGTTAGCATGACATTG+TGG + chr7_3:58571911-58571930 None:intergenic 35.0%
AGTTATGGCATGGAAGTTAT+TGG - chr7_3:58571942-58571961 Msa1112610:intron 35.0%
ATTTAACCCCCAAATGTCTA+TGG - chr7_3:58572105-58572124 Msa1112610:intron 35.0%
AAAACTAATGAGGTCTTTGG+TGG + chr7_3:58572171-58572190 None:intergenic 35.0%
GAAGAGAAGAAGATGAAGAA+AGG + chr7_3:58572293-58572312 None:intergenic 35.0%
ATATGGTAAAGATGAAGAGG+GGG + chr7_3:58572317-58572336 None:intergenic 35.0%
TTTATGTTGCTGGGAATGAT+GGG + chr7_3:58572467-58572486 None:intergenic 35.0%
ATTTATGTTGCTGGGAATGA+TGG + chr7_3:58572468-58572487 None:intergenic 35.0%
!!! TTTTGAGATTCAAAGGGGAT+GGG + chr7_3:58572588-58572607 None:intergenic 35.0%
!!! TTGGGTTTTGAGATTCAAAG+GGG + chr7_3:58572593-58572612 None:intergenic 35.0%
GTTGAATCTGAAGAATGTGA+AGG - chr7_3:58572661-58572680 Msa1112610:intron 35.0%
! CTGAAGAATGTGAAGGTTTT+TGG - chr7_3:58572668-58572687 Msa1112610:intron 35.0%
! GAAGAATGTGAAGGTTTTTG+GGG - chr7_3:58572670-58572689 Msa1112610:intron 35.0%
!! AAGAATGTGAAGGTTTTTGG+GGG - chr7_3:58572671-58572690 Msa1112610:intron 35.0%
! CTGAATTGTTGTCTTGTTGT+TGG - chr7_3:58572869-58572888 Msa1112610:intron 35.0%
TACAATTGGGTGTATCATGT+TGG - chr7_3:58573006-58573025 Msa1112610:CDS 35.0%
ATCATGTTGGATCTGAAGAA+TGG - chr7_3:58573019-58573038 Msa1112610:CDS 35.0%
!! AACAAAGTAAATTGGTGCCA+TGG - chr7_3:58573497-58573516 Msa1112610:intron 35.0%
ATACACCAATCAGATGATCA+TGG + chr7_3:58573544-58573563 None:intergenic 35.0%
ATGATCATCTGATTGGTGTA+TGG - chr7_3:58573543-58573562 Msa1112610:intron 35.0%
! TTTAATTGCCACCTTGGTTT+TGG - chr7_3:58573753-58573772 Msa1112610:intron 35.0%
AAATACTTAGTCCACCATCT+CGG + chr7_3:58573853-58573872 None:intergenic 35.0%
CAAAAAAAAGGAAAGCTCAG+AGG - chr7_3:58574305-58574324 Msa1112610:intron 35.0%
!!! GTTGGAGTCAGATTTTGATT+TGG + chr7_3:58574399-58574418 None:intergenic 35.0%
GCATTAAATCAATGTCAGCA+TGG + chr7_3:58574476-58574495 None:intergenic 35.0%
GAGAACCCTAATGAAATCAT+GGG + chr7_3:58574645-58574664 None:intergenic 35.0%
TGAGAACCCTAATGAAATCA+TGG + chr7_3:58574646-58574665 None:intergenic 35.0%
TTTCATGTTCCTGATTGGTA+AGG - chr7_3:58574701-58574720 Msa1112610:five_prime_UTR 35.0%
GAAATGTATCCTTACCAATC+AGG + chr7_3:58574713-58574732 None:intergenic 35.0%
TCTCATTTGAACACTCTAAG+TGG + chr7_3:58574869-58574888 None:intergenic 35.0%
! CTTAGAGTGTTCAAATGAGA+TGG - chr7_3:58574869-58574888 Msa1112610:five_prime_UTR 35.0%
TGCACACAAAAGTCCTTATC+TGG + chr7_3:58566567-58566586 None:intergenic 40.0%
CCTGTGAACAAATTGAAGCT+AGG + chr7_3:58566730-58566749 None:intergenic 40.0%
! CCTAGCTTCAATTTGTTCAC+AGG - chr7_3:58566727-58566746 Msa1112610:three_prime_UTR 40.0%
! AGCTTCAATTTGTTCACAGG+TGG - chr7_3:58566730-58566749 Msa1112610:three_prime_UTR 40.0%
! CTCAAAACCCATTTTGCCAA+AGG - chr7_3:58566896-58566915 Msa1112610:CDS 40.0%
!! GAAGTTCTGAGATTGTGCTA+TGG - chr7_3:58566979-58566998 Msa1112610:CDS 40.0%
! ACGCATTTGATCAGAAGTGT+CGG - chr7_3:58567192-58567211 Msa1112610:intron 40.0%
!!! TGATTTTCTGAGTGTTGGCA+TGG - chr7_3:58567273-58567292 Msa1112610:intron 40.0%
! TAGTGGTTCCCTTATTTGTG+TGG - chr7_3:58567601-58567620 Msa1112610:intron 40.0%
! CAAGGCATCCACACAAATAA+GGG + chr7_3:58567612-58567631 None:intergenic 40.0%
! AAGCACTGTTTGACACTTGT+TGG - chr7_3:58567851-58567870 Msa1112610:intron 40.0%
TATACTCTATCTGCAGAGGT+TGG - chr7_3:58567954-58567973 Msa1112610:intron 40.0%
AAGTAAATGCATGGATCACG+GGG - chr7_3:58568040-58568059 Msa1112610:intron 40.0%
CAGAATTGGATAACGCCATA+TGG + chr7_3:58568067-58568086 None:intergenic 40.0%
GCTGGATTGAAATGGTAGAT+TGG + chr7_3:58568180-58568199 None:intergenic 40.0%
CTACCATTTCAATCCAGCAT+TGG - chr7_3:58568182-58568201 Msa1112610:CDS 40.0%
AACACTACCGCTAGAATCAT+CGG - chr7_3:58568229-58568248 Msa1112610:intron 40.0%
GAAATTGCCGATGATTCTAG+CGG + chr7_3:58568239-58568258 None:intergenic 40.0%
TCATCGGCAATTTCATCTCA+AGG - chr7_3:58568245-58568264 Msa1112610:intron 40.0%
! TTACTAGATGGTGTTGGACT+TGG + chr7_3:58568380-58568399 None:intergenic 40.0%
GAGTGGGAAGAAACAACAAT+TGG - chr7_3:58568454-58568473 Msa1112610:intron 40.0%
TTGTGAACTCGTAGGAAAAG+TGG - chr7_3:58568685-58568704 Msa1112610:intron 40.0%
CTCGTAGGAAAAGTGGTATA+AGG - chr7_3:58568692-58568711 Msa1112610:intron 40.0%
TCACTTAAACCAGTCCAAAC+CGG + chr7_3:58569477-58569496 None:intergenic 40.0%
TTACATTGTCAATAGCGGTC+TGG - chr7_3:58569500-58569519 Msa1112610:intron 40.0%
TACATTGTCAATAGCGGTCT+GGG - chr7_3:58569501-58569520 Msa1112610:intron 40.0%
! GAGAAACACGTGTTTTGCTA+AGG - chr7_3:58569619-58569638 Msa1112610:intron 40.0%
! GAAACACGTGTTTTGCTAAG+GGG - chr7_3:58569621-58569640 Msa1112610:intron 40.0%
! AAACACGTGTTTTGCTAAGG+GGG - chr7_3:58569622-58569641 Msa1112610:intron 40.0%
! CTTGCAACTGCTCCATTTTA+AGG + chr7_3:58569699-58569718 None:intergenic 40.0%
CTTAAAATGGAGCAGTTGCA+AGG - chr7_3:58569697-58569716 Msa1112610:CDS 40.0%
!!! AGCAGTTGCAAGGGTATTTT+TGG - chr7_3:58569707-58569726 Msa1112610:CDS 40.0%
!!! GCAGTTGCAAGGGTATTTTT+GGG - chr7_3:58569708-58569727 Msa1112610:CDS 40.0%
!!! CAGTTGCAAGGGTATTTTTG+GGG - chr7_3:58569709-58569728 Msa1112610:CDS 40.0%
GAGAGTGAATGAGAAAGCAA+AGG + chr7_3:58569819-58569838 None:intergenic 40.0%
ACGAAGATGCCTCGTTTATT+CGG - chr7_3:58569896-58569915 Msa1112610:intron 40.0%
ATACCACTACCGAATAAACG+AGG + chr7_3:58569908-58569927 None:intergenic 40.0%
AATGCATCTCTCTCTCTCTT+TGG + chr7_3:58570143-58570162 None:intergenic 40.0%
GGTGCAGTAACTAATGATTC+AGG + chr7_3:58570297-58570316 None:intergenic 40.0%
!!! TTTTCAGGTGAGTTGATGTC+TGG - chr7_3:58570658-58570677 Msa1112610:CDS 40.0%
CTTGCAATGTAGATGACATG+AGG + chr7_3:58570706-58570725 None:intergenic 40.0%
CATGTCATCTACATTGCAAG+TGG - chr7_3:58570706-58570725 Msa1112610:intron 40.0%
TGTCGTTATGAAATTCTGGG+CGG + chr7_3:58571430-58571449 None:intergenic 40.0%
ATTCGTGAGCCTTCAATTTC+AGG - chr7_3:58571651-58571670 Msa1112610:intron 40.0%
TGTGCATAAACGTGGCATAT+AGG + chr7_3:58571744-58571763 None:intergenic 40.0%
! TTTTGCTCCGTCAGTCAAAA+AGG - chr7_3:58572069-58572088 Msa1112610:intron 40.0%
!! GTTAGGACCTTTTTGACTGA+CGG + chr7_3:58572079-58572098 None:intergenic 40.0%
GGGGGTTAAATTTAACGGTT+AGG + chr7_3:58572096-58572115 None:intergenic 40.0%
TTGGTCCACCATAGACATTT+GGG + chr7_3:58572116-58572135 None:intergenic 40.0%
!! CTATGGTGGACCAACTTTAA+AGG - chr7_3:58572122-58572141 Msa1112610:intron 40.0%
!!! GTGGACCACTTTTAAAGTTG+GGG + chr7_3:58572152-58572171 None:intergenic 40.0%
!!! GGTGGACCACTTTTAAAGTT+GGG + chr7_3:58572153-58572172 None:intergenic 40.0%
!!! TGGTGGACCACTTTTAAAGT+TGG + chr7_3:58572154-58572173 None:intergenic 40.0%
!!! GTTTTGAGATTCAAAGGGGA+TGG + chr7_3:58572589-58572608 None:intergenic 40.0%
TGTGTGCAGTTGTTTGTGTT+CGG - chr7_3:58572745-58572764 Msa1112610:intron 40.0%
CAACAAGACAACAATTCAGC+AGG + chr7_3:58572868-58572887 None:intergenic 40.0%
TGGATCTGAAGAATGGAACA+AGG - chr7_3:58573026-58573045 Msa1112610:CDS 40.0%
CGGTCCACTATTAAATACAG+TGG - chr7_3:58573212-58573231 Msa1112610:CDS 40.0%
ACAGTGGACATGCAATCAAA+TGG - chr7_3:58573228-58573247 Msa1112610:CDS 40.0%
AGTCACCATGATCATCTGAT+TGG - chr7_3:58573536-58573555 Msa1112610:intron 40.0%
TAACAAAGCCAAAACCAAGG+TGG + chr7_3:58573764-58573783 None:intergenic 40.0%
!!! ACCTTGGTTTTGGCTTTGTT+AGG - chr7_3:58573763-58573782 Msa1112610:intron 40.0%
!!! CCTTGGTTTTGGCTTTGTTA+GGG - chr7_3:58573764-58573783 Msa1112610:intron 40.0%
TTTCCGATAATGAGCATGTC+AGG - chr7_3:58573791-58573810 Msa1112610:intron 40.0%
TGTTACGTGCCTACTGAAAA+TGG - chr7_3:58573815-58573834 Msa1112610:intron 40.0%
GGACTAAGTATTTCCCTTCT+TGG - chr7_3:58573860-58573879 Msa1112610:intron 40.0%
!! ATTTCCCTTCTTGGTTCTGA+TGG - chr7_3:58573869-58573888 Msa1112610:intron 40.0%
TCACGATTGTAGGTGATGAT+TGG - chr7_3:58574249-58574268 Msa1112610:intron 40.0%
CACGATTGTAGGTGATGATT+GGG - chr7_3:58574250-58574269 Msa1112610:intron 40.0%
TGATGATTGGGAGCTTTCTT+TGG - chr7_3:58574262-58574281 Msa1112610:intron 40.0%
GATGATTGGGAGCTTTCTTT+GGG - chr7_3:58574263-58574282 Msa1112610:intron 40.0%
ATGATTGGGAGCTTTCTTTG+GGG - chr7_3:58574264-58574283 Msa1112610:intron 40.0%
!! CTTTCTTTGGGGTAGATTGA+AGG - chr7_3:58574275-58574294 Msa1112610:intron 40.0%
GCTGTTGAATCAGATCATCA+AGG - chr7_3:58574339-58574358 Msa1112610:intron 40.0%
!! GCTGACATTGATTTAATGCG+TGG - chr7_3:58574477-58574496 Msa1112610:intron 40.0%
! AGCTTGCTCTATTCTGATGT+TGG + chr7_3:58574583-58574602 None:intergenic 40.0%
CTCCACCCATGATTTCATTA+GGG - chr7_3:58574637-58574656 Msa1112610:five_prime_UTR 40.0%
AACCCTAATGAAATCATGGG+TGG + chr7_3:58574642-58574661 None:intergenic 40.0%
GAAGGTTTCATGTTCCTGAT+TGG - chr7_3:58574696-58574715 Msa1112610:five_prime_UTR 40.0%
!! CTTGGGCTAGATGTTTTATG+TGG - chr7_3:58574758-58574777 Msa1112610:five_prime_UTR 40.0%
TACTTTCTCTCTCCTCGGTT+GGG + chr7_3:58566471-58566490 None:intergenic 45.0%
ATACTTTCTCTCTCCTCGGT+TGG + chr7_3:58566472-58566491 None:intergenic 45.0%
ATGTGGCCTTTCTATGGCAT+TGG - chr7_3:58567032-58567051 Msa1112610:CDS 45.0%
!! TTTCTGAGTGTTGGCATGGA+AGG - chr7_3:58567277-58567296 Msa1112610:intron 45.0%
! CCAAGGCATCCACACAAATA+AGG + chr7_3:58567613-58567632 None:intergenic 45.0%
! CCTTATTTGTGTGGATGCCT+TGG - chr7_3:58567610-58567629 Msa1112610:intron 45.0%
CCACCAATGCTGGATTGAAA+TGG + chr7_3:58568188-58568207 None:intergenic 45.0%
! CCATTTCAATCCAGCATTGG+TGG - chr7_3:58568185-58568204 Msa1112610:CDS 45.0%
!! TTTCAATCCAGCATTGGTGG+TGG - chr7_3:58568188-58568207 Msa1112610:CDS 45.0%
! TCTCAAGGTGTCAATGTGAG+TGG - chr7_3:58568260-58568279 Msa1112610:intron 45.0%
GTCATACTGTTGTTCCGTCT+GGG - chr7_3:58568282-58568301 Msa1112610:intron 45.0%
TCATACTGTTGTTCCGTCTG+GGG - chr7_3:58568283-58568302 Msa1112610:intron 45.0%
GAGACTGTGAAAAGGAAGAG+AGG - chr7_3:58568305-58568324 Msa1112610:intron 45.0%
CTGTGAAAAGGAAGAGAGGA+AGG - chr7_3:58568309-58568328 Msa1112610:intron 45.0%
CCAGGATTACTAGATGGTGT+TGG + chr7_3:58568386-58568405 None:intergenic 45.0%
CCAACACCATCTAGTAATCC+TGG - chr7_3:58568383-58568402 Msa1112610:intron 45.0%
ACGGTTCCAGGATTACTAGA+TGG + chr7_3:58568392-58568411 None:intergenic 45.0%
! ACAACTGGTTCATACCGGTT+TGG - chr7_3:58569460-58569479 Msa1112610:intron 45.0%
CAGACGAGAAGGGGATATTA+GGG + chr7_3:58569752-58569771 None:intergenic 45.0%
CTAATATCCCCTTCTCGTCT+GGG - chr7_3:58569751-58569770 Msa1112610:CDS 45.0%
TAATATCCCCTTCTCGTCTG+GGG - chr7_3:58569752-58569771 Msa1112610:CDS 45.0%
GCATCTTCGTTGCACAAAAC+TGG + chr7_3:58569886-58569905 None:intergenic 45.0%
ATGCCTCGTTTATTCGGTAG+TGG - chr7_3:58569902-58569921 Msa1112610:intron 45.0%
!! ACAATTGCGGAAAGGCATCA+AGG + chr7_3:58570246-58570265 None:intergenic 45.0%
CCACACACATACAGTCTGTT+TGG + chr7_3:58570381-58570400 None:intergenic 45.0%
CCAAACAGACTGTATGTGTG+TGG - chr7_3:58570378-58570397 Msa1112610:intron 45.0%
! AGTTGATGTCTGGTTCAGCT+GGG - chr7_3:58570668-58570687 Msa1112610:CDS 45.0%
! TTGACATTTTCTCAGGTGCG+AGG - chr7_3:58571579-58571598 Msa1112610:intron 45.0%
AGAGAGCCACCTGAAATTGA+AGG + chr7_3:58571663-58571682 None:intergenic 45.0%
AGGTGGCTCTCTCAAATATG+AGG - chr7_3:58571671-58571690 Msa1112610:intron 45.0%
ATGCCACGTTTATGCACACA+CGG - chr7_3:58571746-58571765 Msa1112610:intron 45.0%
TTTCCGTGTGTGCATAAACG+TGG + chr7_3:58571752-58571771 None:intergenic 45.0%
!! AACTCACATTTTGGTCCCCT+TGG - chr7_3:58572046-58572065 Msa1112610:intron 45.0%
TAACCCCCAAATGTCTATGG+TGG - chr7_3:58572108-58572127 Msa1112610:intron 45.0%
TGGTCCACCATAGACATTTG+GGG + chr7_3:58572115-58572134 None:intergenic 45.0%
GTTGGTCCACCATAGACATT+TGG + chr7_3:58572117-58572136 None:intergenic 45.0%
! TGGTGGACCAACTTTAAAGG+TGG - chr7_3:58572125-58572144 Msa1112610:intron 45.0%
!! TTGGGGACCACCTTTAAAGT+TGG + chr7_3:58572135-58572154 None:intergenic 45.0%
! GTGGTCCCCAACTTTAAAAG+TGG - chr7_3:58572144-58572163 Msa1112610:intron 45.0%
GGTTATGACAGCTACTTGTG+TGG - chr7_3:58572766-58572785 Msa1112610:intron 45.0%
!! TGTGTGGCCGTTTGAAGTTT+TGG - chr7_3:58572782-58572801 Msa1112610:intron 45.0%
!! TTTTGGTTGTGAACACCTGC+TGG - chr7_3:58572799-58572818 Msa1112610:intron 45.0%
!!! ACCTGCTGGAGTGTTTTTTG+TGG - chr7_3:58572813-58572832 Msa1112610:intron 45.0%
TCCACAAAAAACACTCCAGC+AGG + chr7_3:58572817-58572836 None:intergenic 45.0%
CAAGGTTGTTGTGTTCTCAC+TGG - chr7_3:58573044-58573063 Msa1112610:CDS 45.0%
GAGGGGATCAATTTGACTGA+CGG - chr7_3:58573292-58573311 Msa1112610:exon 45.0%
!!! GGGACCAAACTGTTGGTTTT+AGG - chr7_3:58573327-58573346 Msa1112610:five_prime_UTR 45.0%
CCCTAACAAAGCCAAAACCA+AGG + chr7_3:58573767-58573786 None:intergenic 45.0%
CAGCCTGACATGCTCATTAT+CGG + chr7_3:58573797-58573816 None:intergenic 45.0%
CTACTGAAAATGGCTCCTCA+CGG - chr7_3:58573825-58573844 Msa1112610:intron 45.0%
TAAAATAACCTGGACGGGAC+TGG + chr7_3:58573936-58573955 None:intergenic 45.0%
GAAATGCTATTCAGTGCAGC+TGG + chr7_3:58574375-58574394 None:intergenic 45.0%
CAAGGACTTAAGGATGAGGT+TGG + chr7_3:58574417-58574436 None:intergenic 45.0%
CAACCTCATCCTTAAGTCCT+TGG - chr7_3:58574415-58574434 Msa1112610:intron 45.0%
TGACCAAGGACTTAAGGATG+AGG + chr7_3:58574421-58574440 None:intergenic 45.0%
CCTAATGAAATCATGGGTGG+AGG + chr7_3:58574639-58574658 None:intergenic 45.0%
CCTCCACCCATGATTTCATT+AGG - chr7_3:58574636-58574655 Msa1112610:five_prime_UTR 45.0%
!!! TTTTTATTTTGAAAATAATT+AGG - chr7_3:58568656-58568675 Msa1112610:intron 5.0%
!!! TTTTATTTTGAAAATAATTA+GGG - chr7_3:58568657-58568676 Msa1112610:intron 5.0%
!!! GTTTTTTTTTAAATTTTTTA+AGG + chr7_3:58572948-58572967 None:intergenic 5.0%
TGGGGTATGTGGCCTTTCTA+TGG - chr7_3:58567026-58567045 Msa1112610:CDS 50.0%
GTAACACGTGTGAAGCACAC+CGG - chr7_3:58567061-58567080 Msa1112610:CDS 50.0%
CGAATGTGACACGTCGACAT+TGG - chr7_3:58567087-58567106 Msa1112610:intron 50.0%
ACACGACACTACACTGACAC+TGG + chr7_3:58567510-58567529 None:intergenic 50.0%
!! ATGCAGCAGAGAGTACTACC+TGG - chr7_3:58568098-58568117 Msa1112610:intron 50.0%
!! CAGAGAGTACTACCTGGTTC+TGG - chr7_3:58568104-58568123 Msa1112610:intron 50.0%
CTCGGCGAAACATGTAACTC+AGG + chr7_3:58568137-58568156 None:intergenic 50.0%
!! GGTGGTGGTGGTAGTAACAT+TGG - chr7_3:58568203-58568222 Msa1112610:intron 50.0%
GGTCATACTGTTGTTCCGTC+TGG - chr7_3:58568281-58568300 Msa1112610:intron 50.0%
! CTTTTCACAGTCTCCCCAGA+CGG + chr7_3:58568299-58568318 None:intergenic 50.0%
AGAGGAAGGCCGAGGAAATA+TGG - chr7_3:58568323-58568342 Msa1112610:intron 50.0%
CTGTCAGCGCCATATTTCCT+CGG + chr7_3:58568335-58568354 None:intergenic 50.0%
CGCTGACAGAGTTGTGTCAT+TGG - chr7_3:58568346-58568365 Msa1112610:intron 50.0%
! TTGTTTCTTCCCACTCCCAG+GGG + chr7_3:58568450-58568469 None:intergenic 50.0%
!! GTTGTTTCTTCCCACTCCCA+GGG + chr7_3:58568451-58568470 None:intergenic 50.0%
!! TGTTGTTTCTTCCCACTCCC+AGG + chr7_3:58568452-58568471 None:intergenic 50.0%
GGGTCCTATTGTGAACTCGT+AGG - chr7_3:58568677-58568696 Msa1112610:intron 50.0%
!! TGGTTCATACCGGTTTGGAC+TGG - chr7_3:58569465-58569484 Msa1112610:intron 50.0%
ATTGTCAATAGCGGTCTGGG+CGG - chr7_3:58569504-58569523 Msa1112610:intron 50.0%
GGCAAGGTGGTGTAGAATAG+AGG - chr7_3:58569577-58569596 Msa1112610:intron 50.0%
GGTGGTGTAGAATAGAGGTG+TGG - chr7_3:58569582-58569601 Msa1112610:intron 50.0%
CCAGACGAGAAGGGGATATT+AGG + chr7_3:58569753-58569772 None:intergenic 50.0%
CCTAATATCCCCTTCTCGTC+TGG - chr7_3:58569750-58569769 Msa1112610:CDS 50.0%
AGAGTGACGAGAAGAGAGAG+CGG + chr7_3:58569795-58569814 None:intergenic 50.0%
!! ACTGGTTTGAAGAAGAGGGC+CGG + chr7_3:58569868-58569887 None:intergenic 50.0%
ACAGACTGTATGTGTGTGGC+AGG - chr7_3:58570382-58570401 Msa1112610:intron 50.0%
!! GAGTTGATGTCTGGTTCAGC+TGG - chr7_3:58570667-58570686 Msa1112610:CDS 50.0%
CGTGAGCCTTCAATTTCAGG+TGG - chr7_3:58571654-58571673 Msa1112610:intron 50.0%
ACTGACGGAGCAAAACCAAG+GGG + chr7_3:58573307-58573326 None:intergenic 50.0%
GACTGACGGAGCAAAACCAA+GGG + chr7_3:58573306-58573325 None:intergenic 50.0%
TGACTGACGGAGCAAAACCA+AGG + chr7_3:58573305-58573324 None:intergenic 50.0%
GGTCCACCATAGACATTTGG+GGG + chr7_3:58572114-58572133 None:intergenic 50.0%
!! TGTGAAGGTTTTTGGGGGCA+AGG - chr7_3:58572676-58572695 Msa1112610:intron 50.0%
TGACTGACGGAGCAAAACCA+AGG - chr7_3:58573305-58573324 Msa1112610:exon 50.0%
GACTGACGGAGCAAAACCAA+GGG - chr7_3:58573306-58573325 Msa1112610:exon 50.0%
ACTGACGGAGCAAAACCAAG+GGG - chr7_3:58573307-58573326 Msa1112610:five_prime_UTR 50.0%
AACCAAGGGGACCAAACTGT+TGG - chr7_3:58573320-58573339 Msa1112610:five_prime_UTR 50.0%
AACCAACAGTTTGGTCCCCT+TGG + chr7_3:58573325-58573344 None:intergenic 50.0%
!! CGTGAGGAGCCATTTTCAGT+AGG + chr7_3:58573827-58573846 None:intergenic 50.0%
GAAAGCTCAGAGGATGCAGA+AGG - chr7_3:58574315-58574334 Msa1112610:intron 50.0%
TGCTGCTGACCAAGGACTTA+AGG + chr7_3:58574427-58574446 None:intergenic 50.0%
AGCATCGCGTCAGATGGATA+TGG - chr7_3:58574443-58574462 Msa1112610:intron 50.0%
GCATCGCGTCAGATGGATAT+GGG - chr7_3:58574444-58574463 Msa1112610:intron 50.0%
! CCTCGGTTGGGTTGCGATAT+CGG + chr7_3:58566459-58566478 None:intergenic 55.0%
CGACGTGTCACATTCGTGTC+CGG + chr7_3:58567083-58567102 None:intergenic 55.0%
ACTACACTGACACTGGCACG+TGG + chr7_3:58567503-58567522 None:intergenic 55.0%
CATGGATCACGGGGACCATA+TGG - chr7_3:58568049-58568068 Msa1112610:intron 55.0%
! TCAGGTTGTGCTCCAGAACC+AGG + chr7_3:58568119-58568138 None:intergenic 55.0%
!! CAATCCAGCATTGGTGGTGG+TGG - chr7_3:58568191-58568210 Msa1112610:intron 55.0%
ACTACCACCACCACCAATGC+TGG + chr7_3:58568198-58568217 None:intergenic 55.0%
CGTCTGGGGAGACTGTGAAA+AGG - chr7_3:58568297-58568316 Msa1112610:intron 55.0%
AAAGGAAGAGAGGAAGGCCG+AGG - chr7_3:58568315-58568334 Msa1112610:intron 55.0%
AATCCTGGAACCGTGACGCA+AGG - chr7_3:58568398-58568417 Msa1112610:intron 55.0%
TGTTTCTTCCCACTCCCAGG+GGG + chr7_3:58568449-58568468 None:intergenic 55.0%
TCTGGGCGGTGTGATAGAGT+TGG - chr7_3:58569518-58569537 Msa1112610:intron 55.0%
CTGGGCGGTGTGATAGAGTT+GGG - chr7_3:58569519-58569538 Msa1112610:intron 55.0%
TGGGCGGTGTGATAGAGTTG+GGG - chr7_3:58569520-58569539 Msa1112610:intron 55.0%
TGTGATAGAGTTGGGGCGGT+TGG - chr7_3:58569527-58569546 Msa1112610:intron 55.0%
GTGATAGAGTTGGGGCGGTT+GGG - chr7_3:58569528-58569547 Msa1112610:intron 55.0%
TACACCACCTTGCCACGTGT+GGG + chr7_3:58569571-58569590 None:intergenic 55.0%
GTGTTTCTCGTGCACGAACG+TGG + chr7_3:58569608-58569627 None:intergenic 55.0%
GAGCGGGCGTATATGTTCTG+TGG + chr7_3:58569778-58569797 None:intergenic 55.0%
GAGTGACGAGAAGAGAGAGC+GGG + chr7_3:58569794-58569813 None:intergenic 55.0%
TGGTTTGAAGAAGAGGGCCG+GGG + chr7_3:58569866-58569885 None:intergenic 55.0%
! CTGGTTTGAAGAAGAGGGCC+GGG + chr7_3:58569867-58569886 None:intergenic 55.0%
! GATGTCTGGTTCAGCTGGGA+CGG - chr7_3:58570672-58570691 Msa1112610:CDS 55.0%
! ATGTCTGGTTCAGCTGGGAC+GGG - chr7_3:58570673-58570692 Msa1112610:intron 55.0%
!! AAGGTTTTTGGGGGCAAGGC+TGG - chr7_3:58572680-58572699 Msa1112610:intron 55.0%
!! TTTTGGGGGCAAGGCTGGTT+CGG - chr7_3:58572685-58572704 Msa1112610:intron 55.0%
! GTTGCTGTTAGCAGCTGCTG+CGG - chr7_3:58572717-58572736 Msa1112610:intron 55.0%
GCGGCCATCAGAACCAAGAA+GGG + chr7_3:58573876-58573895 None:intergenic 55.0%
CAACTGCTCCACCAAAGACG+CGG + chr7_3:58573895-58573914 None:intergenic 55.0%
GTCTTTGGTGGAGCAGTTGG+TGG - chr7_3:58573896-58573915 Msa1112610:intron 55.0%
CCGATATCGCAACCCAACCG+AGG - chr7_3:58566456-58566475 Msa1112610:three_prime_UTR 60.0%
TTTCGGACCGCCTTGCGTCA+CGG + chr7_3:58568411-58568430 None:intergenic 60.0%
GCGGTGTGATAGAGTTGGGG+CGG - chr7_3:58569523-58569542 Msa1112610:intron 60.0%
GTTGGGGCGGTTGGGATCAA+TGG - chr7_3:58569536-58569555 Msa1112610:intron 60.0%
CTACACCACCTTGCCACGTG+TGG + chr7_3:58569572-58569591 None:intergenic 60.0%
TCTGTGGCCCCAGACGAGAA+GGG + chr7_3:58569762-58569781 None:intergenic 60.0%
TTCTGTGGCCCCAGACGAGA+AGG + chr7_3:58569763-58569782 None:intergenic 60.0%
!! AAGGCTGGTTCGGCTGTGTC+TGG - chr7_3:58572695-58572714 Msa1112610:intron 60.0%
TCCTCACGGAACCGAGATGG+TGG - chr7_3:58573839-58573858 Msa1112610:intron 60.0%
TCCACCATCTCGGTTCCGTG+AGG + chr7_3:58573843-58573862 None:intergenic 60.0%
CGCGGCCATCAGAACCAAGA+AGG + chr7_3:58573877-58573896 None:intergenic 60.0%
! GGTTCTGATGGCCGCGTCTT+TGG - chr7_3:58573881-58573900 Msa1112610:intron 60.0%
TCTGATGGCCGCGTCTTTGG+TGG - chr7_3:58573884-58573903 Msa1112610:intron 60.0%
CGCGTCTTTGGTGGAGCAGT+TGG - chr7_3:58573893-58573912 Msa1112610:intron 60.0%
! ACGGGACTGGCAGCAACAAG+CGG + chr7_3:58573923-58573942 None:intergenic 60.0%
TGACGCGATGCTGCTGACCA+AGG + chr7_3:58574435-58574454 None:intergenic 60.0%
GTCAGCAGCATCGCGTCAGA+TGG - chr7_3:58574437-58574456 Msa1112610:intron 60.0%
CCTGGAACCGTGACGCAAGG+CGG - chr7_3:58568401-58568420 Msa1112610:intron 65.0%
ACGCAAGGCGGTCCGAAACG+AGG - chr7_3:58568413-58568432 Msa1112610:intron 65.0%
CGCAAGGCGGTCCGAAACGA+GGG - chr7_3:58568414-58568433 Msa1112610:intron 65.0%
GCGGTCCGAAACGAGGGAGA+GGG - chr7_3:58568420-58568439 Msa1112610:intron 65.0%
GGACGCCCTCTCCCTCGTTT+CGG + chr7_3:58568428-58568447 None:intergenic 65.0%
!! TGGCTAGCCTCACCCACACG+TGG - chr7_3:58569556-58569575 Msa1112610:intron 65.0%
AGCCTCACCCACACGTGGCA+AGG - chr7_3:58569561-58569580 Msa1112610:intron 65.0%
CACCTTGCCACGTGTGGGTG+AGG + chr7_3:58569566-58569585 None:intergenic 65.0%
CTCACCCACACGTGGCAAGG+TGG - chr7_3:58569564-58569583 Msa1112610:intron 65.0%
CTGTGGCCCCAGACGAGAAG+GGG + chr7_3:58569761-58569780 None:intergenic 65.0%
!! ACGGCTGGTTCGCAGCAGAG+GGG + chr7_3:58569841-58569860 None:intergenic 65.0%
!! CACGGCTGGTTCGCAGCAGA+GGG + chr7_3:58569842-58569861 None:intergenic 65.0%
GGCTCCTCACGGAACCGAGA+TGG - chr7_3:58573836-58573855 Msa1112610:intron 65.0%
TGTTGCTGCCAGTCCCGTCC+AGG - chr7_3:58573925-58573944 Msa1112610:intron 65.0%
CCGCCTTGCGTCACGGTTCC+AGG + chr7_3:58568404-58568423 None:intergenic 70.0%
GGCGGTCCGAAACGAGGGAG+AGG - chr7_3:58568419-58568438 Msa1112610:intron 70.0%
!! CCACGGCTGGTTCGCAGCAG+AGG + chr7_3:58569843-58569862 None:intergenic 70.0%
CCTCTGCTGCGAACCAGCCG+TGG - chr7_3:58569840-58569859 Msa1112610:intron 70.0%
GAAGAAGAGGGCCGGGGCCA+CGG + chr7_3:58569860-58569879 None:intergenic 70.0%
!! GAGGGAGAGGGCGTCCCCCT+GGG - chr7_3:58568432-58568451 Msa1112610:intron 75.0%
!! AGAGGGCGTCCCCCTGGGAG+TGG - chr7_3:58568437-58568456 Msa1112610:intron 75.0%
!! GAGGGCGTCCCCCTGGGAGT+GGG - chr7_3:58568438-58568457 Msa1112610:intron 75.0%
CTGCGAACCAGCCGTGGCCC+CGG - chr7_3:58569846-58569865 Msa1112610:intron 75.0%
!!! CGAGGGAGAGGGCGTCCCCC+TGG - chr7_3:58568431-58568450 Msa1112610:intron 80.0%
! AAGAGGGCCGGGGCCACGGC+TGG + chr7_3:58569856-58569875 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 58566424 58574932 58566424 ID=Msa1112610;Name=Msa1112610
chr7_3 mRNA 58566424 58574932 58566424 ID=Msa1112610-mRNA-1;Parent=Msa1112610;Name=Msa1112610-mRNA-1;_AED=0.04;_eAED=0.04;_QI=456|0.66|0.85|0.85|0.83|0.71|7|429|374
chr7_3 exon 58566424 58567095 58566424 ID=Msa1112610-mRNA-1:exon:12855;Parent=Msa1112610-mRNA-1
chr7_3 exon 58567410 58567571 58567410 ID=Msa1112610-mRNA-1:exon:12854;Parent=Msa1112610-mRNA-1
chr7_3 exon 58568126 58568209 58568126 ID=Msa1112610-mRNA-1:exon:12853;Parent=Msa1112610-mRNA-1
chr7_3 exon 58569664 58569795 58569664 ID=Msa1112610-mRNA-1:exon:12852;Parent=Msa1112610-mRNA-1
chr7_3 exon 58570624 58570691 58570624 ID=Msa1112610-mRNA-1:exon:12851;Parent=Msa1112610-mRNA-1
chr7_3 exon 58572871 58573386 58572871 ID=Msa1112610-mRNA-1:exon:12850;Parent=Msa1112610-mRNA-1
chr7_3 exon 58574557 58574932 58574557 ID=Msa1112610-mRNA-1:exon:12849;Parent=Msa1112610-mRNA-1
chr7_3 five_prime_UTR 58574557 58574932 58574557 ID=Msa1112610-mRNA-1:five_prime_utr;Parent=Msa1112610-mRNA-1
chr7_3 five_prime_UTR 58573307 58573386 58573307 ID=Msa1112610-mRNA-1:five_prime_utr;Parent=Msa1112610-mRNA-1
chr7_3 CDS 58572871 58573306 58572871 ID=Msa1112610-mRNA-1:cds;Parent=Msa1112610-mRNA-1
chr7_3 CDS 58570624 58570691 58570624 ID=Msa1112610-mRNA-1:cds;Parent=Msa1112610-mRNA-1
chr7_3 CDS 58569664 58569795 58569664 ID=Msa1112610-mRNA-1:cds;Parent=Msa1112610-mRNA-1
chr7_3 CDS 58568126 58568209 58568126 ID=Msa1112610-mRNA-1:cds;Parent=Msa1112610-mRNA-1
chr7_3 CDS 58567410 58567571 58567410 ID=Msa1112610-mRNA-1:cds;Parent=Msa1112610-mRNA-1
chr7_3 CDS 58566853 58567095 58566853 ID=Msa1112610-mRNA-1:cds;Parent=Msa1112610-mRNA-1
chr7_3 three_prime_UTR 58566424 58566852 58566424 ID=Msa1112610-mRNA-1:three_prime_utr;Parent=Msa1112610-mRNA-1
Gene Sequence

>Msa1112610

ATGGATCACGGGGACCATATGGCGTTATCCAATTCTGCATCTTACTATATGCAGCAGAGAGTACTACCTGGTTCTGGAGCACAACCTGAGTTACATGTTTCGCCGAGTTTTAATCAACTGTCTAATCCCAATCTACCATTTCAATCCAGCATTGGTGGTGGTGGTAGTAACATTGGAACAACACTACCGCTAGAATCATCGGCAATTTCATCTCAAGGTGTCAATGTGAGTGGTCATACTGTTGTTCCGTCTGGGGAGACTGTGAAAAGGAAGAGAGGAAGGCCGAGGAAATATGGCGCTGACAGAGTTGTGTCATTGGCACTGAGTCCAAGTCCAACACCATCTAGTAATCCTGGAACCGTGACGCAAGGCGGTCCGAAACGAGGGAGAGGGCGTCCCCCTGGGAGTGGGAAGAAACAACAATTGGCTTCTTTTGGTGAGTTGATGTCTGGTTCAGCTGGGACGGGATTCATTCCTCATGTCATCTACATTGCAAGTGGAGAAGATATTGCATCAAAAATTTTGACATTTTCTCAGGTGCGAGGTAGAGCTCTTTGTGTTTTGTCATCTTCTGGCAGTGTCTCAAGCGTCATTATTCGTGAGCCTTCAATTTCAGGTGGCTCTCTCAAATATGAGGATGATGAAGTTTTGAGGAAGAAGAAGAATAGAGAAGATGATGAAAAGGAAAAATTAGGTGTTGACGGTCCACTATTAAATACAGGACATTTTCCGATAATGAGCATGTCAGGCTGTTACGTGCCTACTGAAAATGGCTCCTCACGGAACCGAGATGGTGGACTAAGTATTTCCCTTCTTGGTTCTGATGGCCGCGTCTTTGGTGGAGCAGTTGGTGGACCGCTTGTTGCTGCCAGTCCCGTCCAGGTGATGATTGGGAGCTTTCTTTGGGGTAGATTGAAGGCAAAGAACAAAAAAAAGGAAAGCTCAGAGGATGCAGAAGGTGCTGTTGAATCAGATCATCAAGGAGCTCATAATCCAGCTGCACTGAATAGCATTTCACCAAATCAAAATCTGACTCCAACCTCATCCTTAAGTCCTTGGTCAGCAGCATCGCGTCAGATGGATATGGGTAACTCCCATGCTGACATTGATTTAATGCGTGGTTGA
Protein sequence

>Msa1112610

MDHGDHMALSNSASYYMQQRVLPGSGAQPELHVSPSFNQLSNPNLPFQSSIGGGGSNIGTTLPLESSAISSQGVNVSGHTVVPSGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTVTQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIYIASGEDIASKILTFSQVRGRALCVLSSSGSVSSVIIREPSISGGSLKYEDDEVLRKKKNREDDEKEKLGVDGPLLNTGHFPIMSMSGCYVPTENGSSRNRDGGLSISLLGSDGRVFGGAVGGPLVAASPVQVMIGSFLWGRLKAKNKKKESSEDAEGAVESDHQGAHNPAALNSISPNQNLTPTSSLSPWSAASRQMDMGNSHADIDLMRG*