AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0546740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546740 MtrunA17_Chr4g0028521 94.318 88 5 0 25 112 17 104 5.39e-53 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546740 AT3G45050.1 60.396 101 34 3 13 111 21 117 2.68e-31 110
Msa0546740 AT3G45050.2 60.396 101 34 3 13 111 21 117 2.86e-30 108
Msa0546740 AT3G45050.3 60.396 101 34 3 13 111 21 117 2.86e-30 108
Msa0546740 AT3G45050.4 60.396 101 34 3 13 111 21 117 2.86e-30 108

Find 54 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCTCCCGGTGTCAATTT+AGG 0.261742 4_1:+38982758 Msa0546740:CDS
CACGTATCCTTCACCTTTGC+AGG 0.266782 4_1:-38984177 None:intergenic
CAAGAAGGTGGGATTTAGTA+TGG 0.279784 4_1:+38984234 Msa0546740:CDS
TTTGCTCTTATATATGGATA+TGG 0.287572 4_1:+38985422 Msa0546740:three_prime_UTR
TGGTCTGATGGTGTTGGCTT+GGG 0.296166 4_1:+38982700 None:intergenic
GTGCAGTAGCTCCACTTCTT+TGG 0.304778 4_1:-38985337 None:intergenic
CTGTGTGGACTCAGAAGTTT+TGG 0.321230 4_1:-38983306 None:intergenic
TGCGAAGCTTGTGGAGGTTC+TGG 0.323223 4_1:+38984143 Msa0546740:CDS
AAATCAAGATCTCTTATATA+TGG 0.328098 4_1:+38985453 Msa0546740:three_prime_UTR
TACATAAAATTTCCTTCAAA+TGG 0.329458 4_1:-38985572 None:intergenic
TTGGTCTGATGGTGTTGGCT+TGG 0.342401 4_1:+38982699 None:intergenic
ATGGTGTTGGCTTGGGACCT+TGG 0.378225 4_1:+38982707 Msa0546740:CDS
TACTGCACAAAATGCTCTTC+TGG 0.383793 4_1:+38985352 Msa0546740:CDS
ACTAAATCTAGTGATTGATT+AGG 0.390901 4_1:+38985522 Msa0546740:three_prime_UTR
TCTCGATTCATTCCATTTGA+AGG 0.405703 4_1:+38985560 Msa0546740:three_prime_UTR
AGATCTCTTATATATGGATA+TGG 0.417773 4_1:+38985459 Msa0546740:three_prime_UTR
TTTAACCATCAGATCGTATG+AGG 0.441179 4_1:-38985126 None:intergenic
TTTGCAGAACTATATAATAT+AGG 0.446907 4_1:+38985634 Msa0546740:three_prime_UTR
TTGGGTTGGTCTGATGGTGT+TGG 0.454935 4_1:+38982694 None:intergenic
TGTGCTCCTCTCAAGGTCTC+AGG 0.467446 4_1:+38982732 Msa0546740:CDS
AACTATATAATATAGGTGTT+AGG 0.482543 4_1:+38985641 Msa0546740:three_prime_UTR
CTTGGAGTGTGCTCCTCTCA+AGG 0.488214 4_1:+38982725 Msa0546740:CDS
GGGTATGTGAACAGGATGAA+TGG 0.489472 4_1:+38985050 Msa0546740:intron
TATCCTTCACCTTTGCAGGC+TGG 0.492824 4_1:-38984173 None:intergenic
GCCACGGAAACTGCAGTCTC+AGG 0.499889 4_1:-38983233 None:intergenic
TGTTCAACATGTGGTGGAAG+TGG 0.503858 4_1:+38985382 Msa0546740:CDS
TGGGATTTAGTATGGGAAAG+GGG 0.518262 4_1:+38984242 Msa0546740:CDS
TTCTGAAGAAAGTGCTGAGA+AGG 0.519785 4_1:+38984211 Msa0546740:CDS
TGAAGTCACAATTGCAAACA+AGG 0.519947 4_1:+38983183 Msa0546740:CDS
GTGGGATTTAGTATGGGAAA+GGG 0.536611 4_1:+38984241 Msa0546740:CDS
GGTATGTGAACAGGATGAAT+GGG 0.547424 4_1:+38985051 Msa0546740:intron
GGTCTCAGGTTCGATTCTCC+CGG 0.552600 4_1:+38982746 Msa0546740:CDS
TTCAAAGAATGCGAAGCTTG+TGG 0.553196 4_1:+38984134 Msa0546740:CDS
TGCTGAGAAGGCAAGAAGGT+GGG 0.564347 4_1:+38984223 Msa0546740:CDS
GCCTGAGACTGCAGTTTCCG+TGG 0.567805 4_1:+38983232 Msa0546740:CDS
TGTCCAGCCTGCAAAGGTGA+AGG 0.582605 4_1:+38984170 Msa0546740:CDS
ACACCAGGCTTCCAAAGAAG+TGG 0.583227 4_1:+38985326 Msa0546740:intron
ATGCTCCTCATACGATCTGA+TGG 0.585025 4_1:+38985121 Msa0546740:CDS
GGTTCTCTGTACAAGAAGAG+TGG 0.585572 4_1:-38983285 None:intergenic
AAGAAGGTGGGATTTAGTAT+GGG 0.588107 4_1:+38984235 Msa0546740:CDS
AAAGTGCTGAGAAGGCAAGA+AGG 0.594663 4_1:+38984219 Msa0546740:CDS
AAAAGTTGCTGCTACTGCCA+CGG 0.603898 4_1:-38983249 None:intergenic
GGTGGGATTTAGTATGGGAA+AGG 0.612324 4_1:+38984240 Msa0546740:CDS
GGTATATGTCCAGCCTGCAA+AGG 0.614856 4_1:+38984164 Msa0546740:CDS
CTAGCCACCTAAATTGACAC+CGG 0.625788 4_1:-38982765 None:intergenic
GTGCTGAGAAGGCAAGAAGG+TGG 0.629693 4_1:+38984222 Msa0546740:CDS
AAAGAATGCGAAGCTTGTGG+AGG 0.643600 4_1:+38984137 Msa0546740:CDS
CTTGAGAGGAGCACACTCCA+AGG 0.644983 4_1:-38982724 None:intergenic
TAGCCACCTAAATTGACACC+GGG 0.654594 4_1:-38982764 None:intergenic
ATCGAACCTGAGACCTTGAG+AGG 0.672799 4_1:-38982738 None:intergenic
GGCAGAAACTGTTCAACATG+TGG 0.690362 4_1:+38985373 Msa0546740:CDS
AGAAACTGTTCAACATGTGG+TGG 0.691039 4_1:+38985376 Msa0546740:CDS
CAAAACTTCTGAGTCCACAC+AGG 0.698030 4_1:+38983307 Msa0546740:CDS
AGATGGGTTACTGACCTGTG+TGG 0.759513 4_1:-38983321 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTATAAATTCTTTTTTTA+AGG - chr4_1:38984847-38984866 None:intergenic 10.0%
!!! ATCAAAATTAAAAATTTTAG+AGG - chr4_1:38985280-38985299 None:intergenic 10.0%
!!! TCATTTTCTCAAATTATTAT+TGG + chr4_1:38983407-38983426 Msa0546740:intron 15.0%
!!! TATTTTTGTTCAACATTAAT+AGG - chr4_1:38984502-38984521 None:intergenic 15.0%
!! AAGTAATAAATCTGTTTATA+TGG + chr4_1:38984712-38984731 Msa0546740:intron 15.0%
!!! AATTAAAAATTTTAGAGGAA+AGG - chr4_1:38985275-38985294 None:intergenic 15.0%
!!! AAAAGATTTTGTAGAATTTG+AGG + chr4_1:38982905-38982924 Msa0546740:intron 20.0%
!! TACTTCATAATTTAAACTGA+GGG - chr4_1:38983024-38983043 None:intergenic 20.0%
!! TTACTTCATAATTTAAACTG+AGG - chr4_1:38983025-38983044 None:intergenic 20.0%
!! TTGATGTTGTAAAATGAAAA+GGG + chr4_1:38983122-38983141 Msa0546740:intron 20.0%
!! TCTCAAATTATTAATGATGT+CGG + chr4_1:38983598-38983617 Msa0546740:intron 20.0%
!!! AAGATTTTTATGTTCTTGTT+TGG - chr4_1:38983694-38983713 None:intergenic 20.0%
!! CAATTCAATCATATTATGAA+TGG - chr4_1:38984076-38984095 None:intergenic 20.0%
!! ATAGTTTCACATGAAAAATT+TGG - chr4_1:38984103-38984122 None:intergenic 20.0%
!! TTTCAACCATTAGATTAAAT+AGG + chr4_1:38984292-38984311 Msa0546740:intron 20.0%
!! AGCCTAATTATTATTACTTT+CGG + chr4_1:38984803-38984822 Msa0546740:intron 20.0%
!! AATGAAAATAATGAAACACT+TGG + chr4_1:38985002-38985021 Msa0546740:intron 20.0%
!! AAGAAAACTATCTAAAAACA+TGG + chr4_1:38985207-38985226 Msa0546740:intron 20.0%
!! AAATCAAGATCTCTTATATA+TGG + chr4_1:38985453-38985472 Msa0546740:three_prime_UTR 20.0%
!! TACATAAAATTTCCTTCAAA+TGG - chr4_1:38985575-38985594 None:intergenic 20.0%
!! TTTGCAGAACTATATAATAT+AGG + chr4_1:38985634-38985653 Msa0546740:three_prime_UTR 20.0%
! GCTTCTTCAAAAAAAATCAT+TGG + chr4_1:38982792-38982811 Msa0546740:intron 25.0%
!! CTTTGATGATAAGTTTCAAA+AGG + chr4_1:38982937-38982956 Msa0546740:intron 25.0%
! CTTGATGTTGTAAAATGAAA+AGG + chr4_1:38983121-38983140 Msa0546740:intron 25.0%
! TTCAATGTAATCATTTGTGT+CGG - chr4_1:38983382-38983401 None:intergenic 25.0%
! TTATCAAACATTTGAACTAG+AGG - chr4_1:38983727-38983746 None:intergenic 25.0%
! GATACTCCTATTTAATCTAA+TGG - chr4_1:38984301-38984320 None:intergenic 25.0%
!!! TAGGAGTATCAATTTTATCA+TGG + chr4_1:38984311-38984330 Msa0546740:intron 25.0%
!! AAAAAAAGTGTGAAAGACAA+AGG - chr4_1:38984359-38984378 None:intergenic 25.0%
! GTCCGAAAGTAATAATAATT+AGG - chr4_1:38984808-38984827 None:intergenic 25.0%
!! ATTACTTTCGGACTAATTTT+TGG + chr4_1:38984815-38984834 Msa0546740:intron 25.0%
! TACAACCAAAATTGTTACAA+TGG + chr4_1:38984862-38984881 Msa0546740:intron 25.0%
!!! AGAATTTTGTTTGAAGACAT+TGG - chr4_1:38984890-38984909 None:intergenic 25.0%
! AATGTCTTCAAACAAAATTC+TGG + chr4_1:38984889-38984908 Msa0546740:intron 25.0%
! ATGTCTTCAAACAAAATTCT+GGG + chr4_1:38984890-38984909 Msa0546740:intron 25.0%
!!! TGACGTTATTTTTTCCATTT+GGG + chr4_1:38985029-38985048 Msa0546740:intron 25.0%
!!! AAAATTTTAGAGGAAAGGAA+AGG - chr4_1:38985270-38985289 None:intergenic 25.0%
!!! TGTAGTTTTGCTCTTATATA+TGG + chr4_1:38985416-38985435 Msa0546740:three_prime_UTR 25.0%
! TTTGCTCTTATATATGGATA+TGG + chr4_1:38985422-38985441 Msa0546740:three_prime_UTR 25.0%
! AGATCTCTTATATATGGATA+TGG + chr4_1:38985459-38985478 Msa0546740:three_prime_UTR 25.0%
! ACTAAATCTAGTGATTGATT+AGG + chr4_1:38985522-38985541 Msa0546740:three_prime_UTR 25.0%
!! TTTTATGTATCTCTATTCTG+TGG + chr4_1:38985586-38985605 Msa0546740:three_prime_UTR 25.0%
TCTATCTCTAGCATAGAAAA+TGG + chr4_1:38982839-38982858 Msa0546740:intron 30.0%
CCAATACTAACAATAGAGAT+GGG - chr4_1:38983340-38983359 None:intergenic 30.0%
TCCAATACTAACAATAGAGA+TGG - chr4_1:38983341-38983360 None:intergenic 30.0%
ACAGACACGAATATAAATCA+TGG - chr4_1:38983640-38983659 None:intergenic 30.0%
! TGTTCTTGTTTGGAAAAGTA+AGG - chr4_1:38983684-38983703 None:intergenic 30.0%
GAAAAAAACTTTCTCATGGT+GGG - chr4_1:38984276-38984295 None:intergenic 30.0%
TGAAAAAAACTTTCTCATGG+TGG - chr4_1:38984277-38984296 None:intergenic 30.0%
GGTTGAAAAAAACTTTCTCA+TGG - chr4_1:38984280-38984299 None:intergenic 30.0%
AAAGACAAAGGAAAAGAATG+TGG - chr4_1:38984347-38984366 None:intergenic 30.0%
TTTCTTCTCAGCGATAAAAA+TGG - chr4_1:38984468-38984487 None:intergenic 30.0%
TTGTTCAACATTAATAGGAG+TGG - chr4_1:38984497-38984516 None:intergenic 30.0%
TGCAATTAATCTGAATCTCT+GGG + chr4_1:38984538-38984557 Msa0546740:intron 30.0%
CCAAAAATGATGCAAATAAC+TGG - chr4_1:38984619-38984638 None:intergenic 30.0%
! CCAGTTATTTGCATCATTTT+TGG + chr4_1:38984616-38984635 Msa0546740:intron 30.0%
ACAAAATTCTGGGTAAAACA+TGG + chr4_1:38984900-38984919 Msa0546740:intron 30.0%
CAAAATTCTGGGTAAAACAT+GGG + chr4_1:38984901-38984920 Msa0546740:intron 30.0%
AAAATTCTGGGTAAAACATG+GGG + chr4_1:38984902-38984921 Msa0546740:intron 30.0%
!!! CTGACGTTATTTTTTCCATT+TGG + chr4_1:38985028-38985047 Msa0546740:intron 30.0%
!!! GACGTTATTTTTTCCATTTG+GGG + chr4_1:38985030-38985049 Msa0546740:intron 30.0%
TGCAGAAAAAAATCTAGTGT+TGG + chr4_1:38985081-38985100 Msa0546740:CDS 30.0%
! AGAAAAAAATCTAGTGTTGG+TGG + chr4_1:38985084-38985103 Msa0546740:CDS 30.0%
! TTTTAGATAGTTTTCTTGCC+TGG - chr4_1:38985204-38985223 None:intergenic 30.0%
! GGCAATGTATAGTATGTTTT+TGG + chr4_1:38985607-38985626 Msa0546740:three_prime_UTR 30.0%
CAACTTCATGTGAGAATAGT+CGG - chr4_1:38983051-38983070 None:intergenic 35.0%
ATCAGTGGATCATTTGCTTA+GGG - chr4_1:38983085-38983104 None:intergenic 35.0%
TATCAGTGGATCATTTGCTT+AGG - chr4_1:38983086-38983105 None:intergenic 35.0%
GATCCACTGATAAGAACTTA+TGG + chr4_1:38983094-38983113 Msa0546740:intron 35.0%
TAGCCATAAGTTCTTATCAG+TGG - chr4_1:38983100-38983119 None:intergenic 35.0%
TGAAGTCACAATTGCAAACA+AGG + chr4_1:38983183-38983202 Msa0546740:CDS 35.0%
CCCATCTCTATTGTTAGTAT+TGG + chr4_1:38983337-38983356 Msa0546740:intron 35.0%
TGTCTCTCTTCTACATAAGT+GGG - chr4_1:38983512-38983531 None:intergenic 35.0%
TATAATGTAACCATGTGTGC+TGG - chr4_1:38983567-38983586 None:intergenic 35.0%
! TCTTGTTTGGAAAAGTAAGG+CGG - chr4_1:38983681-38983700 None:intergenic 35.0%
TATTACCTGCATCTACATGT+TGG + chr4_1:38983815-38983834 Msa0546740:intron 35.0%
AAGAAGGTGGGATTTAGTAT+GGG + chr4_1:38984235-38984254 Msa0546740:CDS 35.0%
AAAGGAAAAGAATGTGGTGT+AGG - chr4_1:38984341-38984360 None:intergenic 35.0%
AAAAATATGCCGACAAGTAG+AGG + chr4_1:38984515-38984534 Msa0546740:intron 35.0%
TTAATTGCACCTCTACTTGT+CGG - chr4_1:38984527-38984546 None:intergenic 35.0%
GTGCAATTAATCTGAATCTC+TGG + chr4_1:38984537-38984556 Msa0546740:intron 35.0%
AATAACTGGAGAAATACGAC+TGG - chr4_1:38984605-38984624 None:intergenic 35.0%
! TGGAGCCATTGTAACAATTT+TGG - chr4_1:38984870-38984889 None:intergenic 35.0%
AAATTCTGGGTAAAACATGG+GGG + chr4_1:38984903-38984922 Msa0546740:intron 35.0%
AGCTTGGTTAGTAAAACACT+TGG + chr4_1:38984968-38984987 Msa0546740:intron 35.0%
TTTAACCATCAGATCGTATG+AGG - chr4_1:38985129-38985148 None:intergenic 35.0%
GTTAAAAAGCAACTTTCCCA+TGG + chr4_1:38985143-38985162 Msa0546740:intron 35.0%
ACTGAATTTCTACATACACC+AGG + chr4_1:38985311-38985330 Msa0546740:intron 35.0%
TCTCGATTCATTCCATTTGA+AGG + chr4_1:38985560-38985579 Msa0546740:three_prime_UTR 35.0%
! GTCAATTTAGGTGGCTAGTT+TGG + chr4_1:38982770-38982789 Msa0546740:intron 40.0%
! CAGTAGCAGCAACTTTTGTT+GGG + chr4_1:38983255-38983274 Msa0546740:CDS 40.0%
! AGTAGCAGCAACTTTTGTTG+GGG + chr4_1:38983256-38983275 Msa0546740:CDS 40.0%
! GTAATCATTTGTGTCGGTGT+CGG - chr4_1:38983376-38983395 None:intergenic 40.0%
GTGTCTCTCTTCTACATAAG+TGG - chr4_1:38983513-38983532 None:intergenic 40.0%
ATCCACATAGACACAAACAC+AGG - chr4_1:38983849-38983868 None:intergenic 40.0%
AGCACAAACTAGCGACATAT+AGG + chr4_1:38983914-38983933 Msa0546740:intron 40.0%
TTCAAAGAATGCGAAGCTTG+TGG + chr4_1:38984134-38984153 Msa0546740:CDS 40.0%
!! TTCTGAAGAAAGTGCTGAGA+AGG + chr4_1:38984211-38984230 Msa0546740:CDS 40.0%
CAAGAAGGTGGGATTTAGTA+TGG + chr4_1:38984234-38984253 Msa0546740:CDS 40.0%
GTGGGATTTAGTATGGGAAA+GGG + chr4_1:38984241-38984260 Msa0546740:CDS 40.0%
TGGGATTTAGTATGGGAAAG+GGG + chr4_1:38984242-38984261 Msa0546740:CDS 40.0%
TTTACACTGCTCATCAGATC+TGG + chr4_1:38984562-38984581 Msa0546740:intron 40.0%
ACATAAACTGCAGTGCAGAA+TGG + chr4_1:38984767-38984786 Msa0546740:intron 40.0%
CAGTGCAGAATGGATACATA+AGG + chr4_1:38984777-38984796 Msa0546740:intron 40.0%
AATTCTGGGTAAAACATGGG+GGG + chr4_1:38984904-38984923 Msa0546740:intron 40.0%
GGTATGTGAACAGGATGAAT+GGG + chr4_1:38985051-38985070 Msa0546740:intron 40.0%
AAAAAGCAACTTTCCCATGG+TGG + chr4_1:38985146-38985165 Msa0546740:intron 40.0%
AAAAGCAACTTTCCCATGGT+GGG + chr4_1:38985147-38985166 Msa0546740:intron 40.0%
! AGATAGTTTTCTTGCCTGGT+GGG - chr4_1:38985200-38985219 None:intergenic 40.0%
! TAGATAGTTTTCTTGCCTGG+TGG - chr4_1:38985201-38985220 None:intergenic 40.0%
AAACATGGCAACTCGATTCA+CGG + chr4_1:38985222-38985241 Msa0546740:intron 40.0%
TACTGCACAAAATGCTCTTC+TGG + chr4_1:38985352-38985371 Msa0546740:CDS 40.0%
AGAAACTGTTCAACATGTGG+TGG + chr4_1:38985376-38985395 Msa0546740:CDS 40.0%
! GATTCTCCCGGTGTCAATTT+AGG + chr4_1:38982758-38982777 Msa0546740:CDS 45.0%
TAGCCACCTAAATTGACACC+GGG - chr4_1:38982767-38982786 None:intergenic 45.0%
CTAGCCACCTAAATTGACAC+CGG - chr4_1:38982768-38982787 None:intergenic 45.0%
AAAAGTTGCTGCTACTGCCA+CGG - chr4_1:38983252-38983271 None:intergenic 45.0%
! GCAGTAGCAGCAACTTTTGT+TGG + chr4_1:38983254-38983273 Msa0546740:CDS 45.0%
GGTTCTCTGTACAAGAAGAG+TGG - chr4_1:38983288-38983307 None:intergenic 45.0%
! CTGTGTGGACTCAGAAGTTT+TGG - chr4_1:38983309-38983328 None:intergenic 45.0%
CAAAACTTCTGAGTCCACAC+AGG + chr4_1:38983307-38983326 Msa0546740:CDS 45.0%
ATGAAGCACAGTCTCAGACA+CGG - chr4_1:38983444-38983463 None:intergenic 45.0%
! TGTCTGAGACTGTGCTTCAT+AGG + chr4_1:38983444-38983463 Msa0546740:intron 45.0%
!! TGTAACCATGTGTGCTGGTT+TGG - chr4_1:38983562-38983581 None:intergenic 45.0%
TGACACCAACATGTAGATGC+AGG - chr4_1:38983823-38983842 None:intergenic 45.0%
GTCCTGTGTTTGTGTCTATG+TGG + chr4_1:38983844-38983863 Msa0546740:intron 45.0%
AAAGAATGCGAAGCTTGTGG+AGG + chr4_1:38984137-38984156 Msa0546740:CDS 45.0%
!! AAAGTGCTGAGAAGGCAAGA+AGG + chr4_1:38984219-38984238 Msa0546740:CDS 45.0%
GGTGGGATTTAGTATGGGAA+AGG + chr4_1:38984240-38984259 Msa0546740:CDS 45.0%
! ACCAAGCTTTGCCATTTCCA+CGG - chr4_1:38984956-38984975 None:intergenic 45.0%
! TCCATTTGGGGTATGTGAAC+AGG + chr4_1:38985042-38985061 Msa0546740:intron 45.0%
TCCTGTTCACATACCCCAAA+TGG - chr4_1:38985046-38985065 None:intergenic 45.0%
GGGTATGTGAACAGGATGAA+TGG + chr4_1:38985050-38985069 Msa0546740:intron 45.0%
ATGCTCCTCATACGATCTGA+TGG + chr4_1:38985121-38985140 Msa0546740:CDS 45.0%
!!! GGCTTGTTTTTTCCCACCAT+GGG - chr4_1:38985162-38985181 None:intergenic 45.0%
!!! AGGCTTGTTTTTTCCCACCA+TGG - chr4_1:38985163-38985182 None:intergenic 45.0%
GGTGGGATTTAGTATGGGAA+AGG - chr4_1:38984240-38984259 None:intergenic 45.0%
TTCCCATACTAAATCCCACC+AGG + chr4_1:38985183-38985202 Msa0546740:intron 45.0%
TGCCTGGTGGGATTTAGTAT+GGG - chr4_1:38985188-38985207 None:intergenic 45.0%
TTGCCTGGTGGGATTTAGTA+TGG - chr4_1:38985189-38985208 None:intergenic 45.0%
GGCAGAAACTGTTCAACATG+TGG + chr4_1:38985373-38985392 Msa0546740:CDS 45.0%
! TGTTCAACATGTGGTGGAAG+TGG + chr4_1:38985382-38985401 Msa0546740:CDS 45.0%
ATCGAACCTGAGACCTTGAG+AGG - chr4_1:38982741-38982760 None:intergenic 50.0%
! TCTCCCGGTGTCAATTTAGG+TGG + chr4_1:38982761-38982780 Msa0546740:intron 50.0%
!! AGATGGGTTACTGACCTGTG+TGG - chr4_1:38983324-38983343 None:intergenic 50.0%
GTTGTGTCACGTGTAGCAGT+TGG - chr4_1:38983968-38983987 None:intergenic 50.0%
CTGCTACACGTGACACAACA+CGG + chr4_1:38983969-38983988 Msa0546740:intron 50.0%
GGTATATGTCCAGCCTGCAA+AGG + chr4_1:38984164-38984183 Msa0546740:CDS 50.0%
TATCCTTCACCTTTGCAGGC+TGG - chr4_1:38984176-38984195 None:intergenic 50.0%
CACGTATCCTTCACCTTTGC+AGG - chr4_1:38984180-38984199 None:intergenic 50.0%
TGCTGAGAAGGCAAGAAGGT+GGG + chr4_1:38984223-38984242 Msa0546740:CDS 50.0%
TGAAGAAACAAGAAGCCCCG+TGG + chr4_1:38984936-38984955 Msa0546740:intron 50.0%
AACAAGAAGCCCCGTGGAAA+TGG + chr4_1:38984942-38984961 Msa0546740:intron 50.0%
! CAAGCTTTGCCATTTCCACG+GGG - chr4_1:38984954-38984973 None:intergenic 50.0%
! CCAAGCTTTGCCATTTCCAC+GGG - chr4_1:38984955-38984974 None:intergenic 50.0%
ATGGCAACTCGATTCACGGA+TGG + chr4_1:38985226-38985245 Msa0546740:intron 50.0%
TGGCAACTCGATTCACGGAT+GGG + chr4_1:38985227-38985246 Msa0546740:intron 50.0%
ACACCAGGCTTCCAAAGAAG+TGG + chr4_1:38985326-38985345 Msa0546740:intron 50.0%
GTGCAGTAGCTCCACTTCTT+TGG - chr4_1:38985340-38985359 None:intergenic 50.0%
!! ATGGTGTTGGCTTGGGACCT+TGG + chr4_1:38982707-38982726 Msa0546740:CDS 55.0%
! CTTGAGAGGAGCACACTCCA+AGG - chr4_1:38982727-38982746 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr4_1:38982725-38982744 Msa0546740:CDS 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG + chr4_1:38982732-38982751 Msa0546740:CDS 55.0%
GGTCTCAGGTTCGATTCTCC+CGG + chr4_1:38982746-38982765 Msa0546740:CDS 55.0%
GTGTGCCAAACCAGCACACA+TGG + chr4_1:38983554-38983573 Msa0546740:intron 55.0%
TGCGAAGCTTGTGGAGGTTC+TGG + chr4_1:38984143-38984162 Msa0546740:CDS 55.0%
TGTCCAGCCTGCAAAGGTGA+AGG + chr4_1:38984170-38984189 Msa0546740:CDS 55.0%
GTGCTGAGAAGGCAAGAAGG+TGG + chr4_1:38984222-38984241 Msa0546740:CDS 55.0%
CCCGTGGAAATGGCAAAGCT+TGG + chr4_1:38984952-38984971 Msa0546740:intron 55.0%
! GCTCCACTTCTTTGGAAGCC+TGG - chr4_1:38985332-38985351 None:intergenic 55.0%
GCCTGAGACTGCAGTTTCCG+TGG + chr4_1:38983232-38983251 Msa0546740:CDS 60.0%
GCCACGGAAACTGCAGTCTC+AGG - chr4_1:38983236-38983255 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 38982707 38985662 38982707 ID=Msa0546740;Name=Msa0546740
chr4_1 mRNA 38982707 38985662 38982707 ID=Msa0546740-mRNA-1;Parent=Msa0546740;Name=Msa0546740-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0.2|0.8|1|1|5|250|179
chr4_1 exon 38982707 38982779 38982707 ID=Msa0546740-mRNA-1:exon:9931;Parent=Msa0546740-mRNA-1
chr4_1 exon 38983180 38983328 38983180 ID=Msa0546740-mRNA-1:exon:9932;Parent=Msa0546740-mRNA-1
chr4_1 exon 38984128 38984286 38984128 ID=Msa0546740-mRNA-1:exon:9933;Parent=Msa0546740-mRNA-1
chr4_1 exon 38985064 38985142 38985064 ID=Msa0546740-mRNA-1:exon:9934;Parent=Msa0546740-mRNA-1
chr4_1 exon 38985333 38985662 38985333 ID=Msa0546740-mRNA-1:exon:9935;Parent=Msa0546740-mRNA-1
chr4_1 CDS 38982707 38982779 38982707 ID=Msa0546740-mRNA-1:cds;Parent=Msa0546740-mRNA-1
chr4_1 CDS 38983180 38983328 38983180 ID=Msa0546740-mRNA-1:cds;Parent=Msa0546740-mRNA-1
chr4_1 CDS 38984128 38984286 38984128 ID=Msa0546740-mRNA-1:cds;Parent=Msa0546740-mRNA-1
chr4_1 CDS 38985064 38985142 38985064 ID=Msa0546740-mRNA-1:cds;Parent=Msa0546740-mRNA-1
chr4_1 CDS 38985333 38985412 38985333 ID=Msa0546740-mRNA-1:cds;Parent=Msa0546740-mRNA-1
chr4_1 three_prime_UTR 38985413 38985662 38985413 ID=Msa0546740-mRNA-1:three_prime_utr;Parent=Msa0546740-mRNA-1
Gene Sequence

>Msa0546740

ATGGTGTTGGCTTGGGACCTTGGAGTGTGCTCCTCTCAAGGTCTCAGGTTCGATTCTCCCGGTGTCAATTTAGATGTGAAGTCACAATTGCAAACAAGGAGATCATTCGCAGTCTCGTCTGCACTGCCTGAGACTGCAGTTTCCGTGGCAGTAGCAGCAACTTTTGTTGGGGCAGCAGCCACTCTTCTTGTACAGAGAACCAAAACTTCTGAGTCCACACAGATTGAATTCAAAGAATGCGAAGCTTGTGGAGGTTCTGGTATATGTCCAGCCTGCAAAGGTGAAGGATACGTGCTTAAAAAACTTTCTGAAGAAAGTGCTGAGAAGGCAAGAAGGTGGGATTTAGTATGGGAAAGGGGACTTGTTTCCCACCATGAGAAAGATGAATGGGATGAACTTGCAGAAAAAAATCTAGTGTTGGTGGTCTATCATAAAGCTATGCTCCTCATACGATCTGATGGCTTCCAAAGAAGTGGAGCTACTGCACAAAATGCTCTTCTGGCAGAAACTGTTCAACATGTGGTGGAAGTGGAAAGCTAA

Protein sequence

>Msa0546740

MVLAWDLGVCSSQGLRFDSPGVNLDVKSQLQTRRSFAVSSALPETAVSVAVAATFVGAAATLLVQRTKTSESTQIEFKECEACGGSGICPACKGEGYVLKKLSEESAEKARRWDLVWERGLVSHHEKDEWDELAEKNLVLVVYHKAMLLIRSDGFQRSGATAQNALLAETVQHVVEVES*