AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1237930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237930 MtrunA17_Chr8g0349091 97.959 343 7 0 1 343 1 343 0.0 679
Msa1237930 MtrunA17_Chr7g0247431 60.857 350 126 10 1 343 1 346 2.40e-113 333
Msa1237930 MtrunA17_Chr5g0397551 44.220 346 165 9 1 343 1 321 6.12e-76 236
Msa1237930 MtrunA17_Chr8g0386741 44.847 359 174 11 1 343 1 351 1.67e-69 221
Msa1237930 MtrunA17_Chr1g0179461 50.935 214 94 4 89 291 69 282 3.55e-59 194
Msa1237930 MtrunA17_Chr4g0054661 51.042 192 78 4 89 271 73 257 2.45e-51 173
Msa1237930 MtrunA17_Chr7g0245841 46.875 224 110 2 89 311 60 275 8.53e-51 172
Msa1237930 MtrunA17_Chr4g0056761 42.403 283 129 7 78 340 61 329 1.82e-50 171
Msa1237930 MtrunA17_Chr8g0351761 49.268 205 98 2 88 286 70 274 1.86e-47 164
Msa1237930 MtrunA17_Chr1g0188211 42.969 256 119 8 89 320 49 301 9.44e-46 159
Msa1237930 MtrunA17_Chr5g0398621 41.379 203 98 3 87 283 44 231 2.85e-41 144
Msa1237930 MtrunA17_Chr6g0476061 40.845 213 108 6 85 283 47 255 4.01e-34 127
Msa1237930 MtrunA17_Chr1g0165101 39.819 221 101 6 90 291 86 293 2.04e-33 126
Msa1237930 MtrunA17_Chr7g0274821 43.500 200 102 3 86 282 71 262 8.13e-31 120
Msa1237930 MtrunA17_Chr1g0190011 40.860 186 100 4 89 270 43 222 2.38e-30 117
Msa1237930 MtrunA17_Chr4g0027371 50.806 124 58 2 150 270 14 137 8.18e-29 111
Msa1237930 MtrunA17_Chr4g0027351 48.800 125 61 2 144 267 8 130 1.80e-28 107
Msa1237930 MtrunA17_Chr4g0027331 48.387 124 61 2 144 264 8 131 7.68e-28 105
Msa1237930 MtrunA17_Chr4g0027301 41.935 124 69 2 147 267 18 141 6.14e-22 90.5
Msa1237930 MtrunA17_Chr3g0133051 38.000 150 89 2 122 270 71 217 3.05e-21 92.0
Msa1237930 MtrunA17_Chr5g0417581 36.170 141 74 3 145 270 9 148 2.82e-20 87.4
Msa1237930 MtrunA17_Chr6g0476241 36.275 204 107 9 89 288 120 304 2.50e-18 84.3
Msa1237930 MtrunA17_Chr1g0168121 40.411 146 81 3 125 270 42 181 1.18e-17 81.6
Msa1237930 MtrunA17_Chr3g0086021 45.946 111 54 3 167 274 118 225 7.29e-17 80.1
Msa1237930 MtrunA17_Chr5g0427311 36.508 126 78 2 146 270 71 195 3.98e-16 76.6
Msa1237930 MtrunA17_Chr5g0400531 41.860 129 61 5 90 210 121 243 1.29e-15 75.5
Msa1237930 MtrunA17_Chr5g0398531 37.162 148 87 2 123 270 98 239 1.37e-15 76.6
Msa1237930 MtrunA17_Chr8g0351651 36.242 149 89 2 122 270 83 225 1.44e-15 76.3
Msa1237930 MtrunA17_Chr1g0190051 38.182 165 94 4 125 289 74 230 3.70e-15 75.1
Msa1237930 MtrunA17_Chr3g0112131 40.800 125 71 2 146 270 97 218 4.39e-15 75.1
Msa1237930 MtrunA17_Chr5g0443311 31.776 214 134 5 122 329 48 255 6.37e-15 73.6
Msa1237930 MtrunA17_Chr4g0054651 39.200 125 73 1 146 270 94 215 1.90e-12 67.0
Msa1237930 MtrunA17_Chr7g0250031 38.400 125 74 1 146 270 75 196 1.69e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237930 AT2G45850.1 53.782 357 142 10 1 343 1 348 3.63e-99 297
Msa1237930 AT2G45850.2 53.782 357 142 10 1 343 1 348 3.63e-99 297
Msa1237930 AT3G61310.1 50.959 365 146 12 1 343 1 354 1.54e-85 262
Msa1237930 AT2G45850.3 55.477 283 107 7 1 270 1 277 2.93e-76 236
Msa1237930 AT2G33620.1 50.794 252 98 9 75 319 82 314 7.12e-67 214
Msa1237930 AT2G33620.4 50.794 252 98 9 75 319 82 314 7.12e-67 214
Msa1237930 AT2G33620.2 50.794 252 98 9 75 319 82 314 7.12e-67 214
Msa1237930 AT2G33620.3 50.794 252 98 9 75 319 82 314 7.12e-67 214
Msa1237930 AT4G12080.1 44.565 276 118 7 89 340 89 353 9.94e-67 214
Msa1237930 AT1G63470.1 46.909 275 125 6 89 343 105 378 4.45e-63 205
Msa1237930 AT1G63480.2 39.674 368 190 11 1 343 1 361 5.54e-63 204
Msa1237930 AT1G63480.1 39.674 368 190 11 1 343 1 361 5.54e-63 204
Msa1237930 AT1G63480.5 45.725 269 126 7 89 343 93 355 1.67e-62 203
Msa1237930 AT1G63480.7 45.725 269 126 7 89 343 93 355 1.67e-62 203
Msa1237930 AT1G63480.4 45.725 269 126 7 89 343 93 355 1.67e-62 203
Msa1237930 AT1G63480.3 45.725 269 126 7 89 343 93 355 1.67e-62 203
Msa1237930 AT1G63480.6 45.725 269 126 7 89 343 93 355 1.67e-62 203
Msa1237930 AT4G25320.1 47.619 210 96 3 83 278 80 289 9.73e-55 184
Msa1237930 AT4G17950.1 48.869 221 77 5 89 278 131 346 1.99e-54 184
Msa1237930 AT5G46640.1 52.885 208 76 3 88 278 101 303 1.97e-53 181
Msa1237930 AT4G22770.2 42.537 268 123 7 87 335 70 325 4.04e-52 176
Msa1237930 AT4G22770.1 42.537 268 123 7 87 335 70 325 4.04e-52 176
Msa1237930 AT5G51590.1 43.694 222 85 4 89 273 78 296 2.37e-46 162
Msa1237930 AT5G62260.1 41.850 227 111 5 77 283 63 288 3.30e-46 162
Msa1237930 AT5G62260.3 41.850 227 111 5 77 283 63 288 3.30e-46 162
Msa1237930 AT4G00200.2 42.199 282 129 8 77 340 48 313 1.28e-45 158
Msa1237930 AT4G00200.1 42.199 282 129 8 77 340 48 313 1.28e-45 158
Msa1237930 AT5G62260.2 42.326 215 103 5 77 271 63 276 9.75e-44 152
Msa1237930 AT3G04590.1 40.796 201 106 3 77 272 93 285 1.34e-36 134
Msa1237930 AT3G04590.2 41.206 199 104 3 77 270 93 283 1.13e-35 134
Msa1237930 AT2G36560.1 43.089 123 67 3 152 272 102 223 4.22e-22 97.8
Msa1237930 AT3G60870.1 36.170 188 96 6 89 270 27 196 1.55e-19 87.4
Msa1237930 AT4G14465.1 44.340 106 56 1 118 223 60 162 1.65e-19 87.4
Msa1237930 AT5G49700.1 31.844 179 113 4 122 296 53 226 7.07e-19 85.5
Msa1237930 AT1G76500.1 35.329 167 93 3 113 270 60 220 9.88e-18 82.8
Msa1237930 AT2G45430.1 35.165 182 108 4 122 299 86 261 4.33e-16 78.2
Msa1237930 AT2G42940.1 40.000 150 84 3 122 271 50 193 6.40e-16 77.0
Msa1237930 AT5G28590.1 37.313 134 58 2 149 282 24 131 6.19e-15 73.2
Msa1237930 AT1G14490.2 29.897 194 117 5 106 291 11 193 3.48e-14 71.2
Msa1237930 AT4G12050.1 40.000 150 83 4 122 270 115 258 4.08e-14 72.8
Msa1237930 AT3G04570.1 37.888 161 86 4 118 270 73 227 5.48e-14 72.0
Msa1237930 AT3G55560.1 40.800 125 72 1 146 270 106 228 7.87e-14 71.6
Msa1237930 AT1G14490.1 31.034 174 107 4 126 291 6 174 1.11e-13 69.7
Msa1237930 AT4G22810.1 37.500 152 86 3 122 270 102 247 1.42e-13 71.2
Msa1237930 AT1G20900.1 37.647 170 85 4 110 270 77 234 1.61e-12 67.8
Msa1237930 AT2G35270.1 35.811 148 89 2 123 270 76 217 1.90e-12 67.4
Msa1237930 AT4G35390.1 36.486 148 86 3 125 270 63 204 6.25e-11 62.8

Find 153 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCATTCTTCTTGTTCT+TGG 0.101201 8_2:+17617395 None:intergenic
GGCGCCCTCGACCGCGTTTC+TGG 0.107198 8_2:+17621980 None:intergenic
ATCAATGTAGGTGCTCCTTC+TGG 0.171915 8_2:-17622135 Msa1237930:CDS
GTGACTCGGGCTTGAAGTTC+TGG 0.189996 8_2:-17616887 Msa1237930:three_prime_UTR
CATGACTATCAGGTGATAAT+TGG 0.205239 8_2:-17617444 Msa1237930:intron
TAGAATTCTTTCTTGACTTT+TGG 0.210221 8_2:-17617083 Msa1237930:three_prime_UTR
CTTTGTCAGGCTTCGACATC+TGG 0.211585 8_2:-17618588 Msa1237930:CDS
TTTGGATTGCTGAATATTAA+AGG 0.220950 8_2:-17622422 Msa1237930:five_prime_UTR
CTCCAACATCTCTCAATTCT+TGG 0.272580 8_2:-17617278 Msa1237930:CDS
CGCGGTCGAGGGCGCCCTCC+AGG 0.273094 8_2:-17621973 Msa1237930:CDS
CGTGGAAGGCCTAGAAAATA+TGG 0.274820 8_2:-17622075 Msa1237930:CDS
TGGACTTGCGGTACGGTTCC+AGG 0.276043 8_2:+17622000 None:intergenic
CAGAGATAGGTGGTAAAGTT+TGG 0.303279 8_2:-17622440 Msa1237930:five_prime_UTR
TCAATGTAGGTGCTCCTTCT+GGG 0.321161 8_2:-17622134 Msa1237930:CDS
CCGATGGATTCTTCTGGAAT+TGG 0.331532 8_2:-17622168 Msa1237930:CDS
GTATACATATTTAAGATTCA+TGG 0.337930 8_2:-17617161 Msa1237930:three_prime_UTR
CGAGGGCGCCCTCCAGGGTC+CGG 0.339305 8_2:-17621967 Msa1237930:CDS
CAGAGAGGATTACCTGGTTC+TGG 0.345081 8_2:-17622294 Msa1237930:CDS
TTAAATATGTATACCAATAC+TGG 0.348358 8_2:+17617170 None:intergenic
AAACAACAGTTGGCTTCTTT+CGG 0.348817 8_2:-17621940 Msa1237930:intron
CTATGGTTGATTGACTTTAG+AGG 0.353332 8_2:-17617043 Msa1237930:three_prime_UTR
AAATGTTCAACGGTTTCATA+TGG 0.356271 8_2:+17623504 None:intergenic
AATGGAAATAATCTTGTTAG+AGG 0.356808 8_2:+17616855 None:intergenic
ACGGTTCCAGGATGGCTTGC+TGG 0.370058 8_2:+17622012 None:intergenic
CTAACAAGATTATTTCCATT+AGG 0.370329 8_2:-17616852 Msa1237930:three_prime_UTR
GGATGGCTTGCTGGTGTTGT+TGG 0.373412 8_2:+17622021 None:intergenic
ATCTCTAGTTCAGCTGGAAA+TGG 0.373990 8_2:-17619485 Msa1237930:CDS
GGGGCTGATCTTCGACAATA+TGG 0.377612 8_2:-17616909 Msa1237930:three_prime_UTR
TTTGTCATTAGATTGTTTCA+TGG 0.378708 8_2:-17616816 Msa1237930:three_prime_UTR
AGGCCTTCCACGCTTCCTTT+TGG 0.379855 8_2:+17622086 None:intergenic
CTCTACTGTGACGCTTTGTC+AGG 0.394118 8_2:-17618601 Msa1237930:CDS
CATTGCTGCAAGTCCTGTTC+AGG 0.396488 8_2:-17618021 Msa1237930:intron
GCATTAAATCAATGTCCATA+TGG 0.398657 8_2:+17617223 None:intergenic
TTGGATTGCTGAATATTAAA+GGG 0.401920 8_2:-17622421 Msa1237930:five_prime_UTR
GATGATTTATTTCTGAATCC+AGG 0.404267 8_2:-17616771 Msa1237930:three_prime_UTR
GACCAAATGGCGGCATTATC+CGG 0.406280 8_2:-17622336 Msa1237930:CDS
ACTTGATTGAAACGATGAAT+TGG 0.406986 8_2:+17622224 None:intergenic
GACATAACAAATATAGTTCT+AGG 0.411478 8_2:+17618639 None:intergenic
GAAATGCTACTCATTGCAAC+TGG 0.413713 8_2:+17617318 None:intergenic
CATGTCATCTCCATTGCAAT+TGG 0.414837 8_2:-17619452 Msa1237930:CDS
AGAATAGCAGTTACCTGAAC+AGG 0.415577 8_2:+17618008 None:intergenic
TTTGTCAGGCTTCGACATCT+GGG 0.425486 8_2:-17618587 Msa1237930:CDS
AGTCCTGATGGTCGTGTCAT+TGG 0.425886 8_2:-17618065 Msa1237930:CDS
ATTGGTGGTGGTGGTACTAT+TGG 0.430130 8_2:-17622201 Msa1237930:CDS
AAAATTGCAAGATCTCCTAA+TGG 0.432298 8_2:+17616837 None:intergenic
AAGCCTGACAGGCTCTTACT+TGG 0.439341 8_2:-17618144 Msa1237930:CDS
TTTGAAACAAAACCCGGTCT+AGG 0.440307 8_2:+17616743 None:intergenic
CAACCAAGTAAGAGCCTGTC+AGG 0.452416 8_2:+17618141 None:intergenic
TCATCGTTTCAATCAAGTAT+TGG 0.453396 8_2:-17622219 Msa1237930:CDS
GTTGGAGTCAGACTTTGATT+TGG 0.457634 8_2:+17617294 None:intergenic
TTGGCCTGCATCGCGTCCAT+TGG 0.459716 8_2:-17617259 Msa1237930:CDS
TGATAATTGGGAGCTTTATG+TGG 0.460106 8_2:-17617431 Msa1237930:CDS
ATGACTATCAGGTGATAATT+GGG 0.462367 8_2:-17617443 Msa1237930:intron
TTATTAGCATACACCAGTAT+TGG 0.464929 8_2:-17617183 Msa1237930:three_prime_UTR
AACCGGATAATGCCGCCATT+TGG 0.465036 8_2:+17622334 None:intergenic
CATAAAGTATGATGCAGAAC+CGG 0.471132 8_2:+17622317 None:intergenic
GAGGGCGCCCTCCAGGGTCC+GGG 0.478636 8_2:-17621966 Msa1237930:CDS
GTATTCAGCGGACGAATACC+AGG 0.479562 8_2:+17622246 None:intergenic
ACGATGCCGATGGATTCTTC+TGG 0.481478 8_2:-17622174 Msa1237930:CDS
TGACTCGGGCTTGAAGTTCT+GGG 0.482519 8_2:-17616886 Msa1237930:three_prime_UTR
CAAGTCCAGAAACGCGGTCG+AGG 0.487055 8_2:-17621985 Msa1237930:CDS
CGTGTCATTGGTGGAGGTGT+CGG 0.488023 8_2:-17618053 Msa1237930:CDS
GGTTTGATCTCTAGTTCAGC+TGG 0.488171 8_2:-17619491 Msa1237930:CDS
CATTAAATCAATGTCCATAT+GGG 0.490752 8_2:+17617224 None:intergenic
CAATCAAGTATTGGTGGTGG+TGG 0.492198 8_2:-17622210 Msa1237930:CDS
ACAACACCAGCAAGCCATCC+TGG 0.492885 8_2:-17622018 Msa1237930:CDS
ATATCCAATGGACGCGATGC+AGG 0.493146 8_2:+17617255 None:intergenic
ATGATTTATTTCTGAATCCA+GGG 0.496324 8_2:-17616770 Msa1237930:three_prime_UTR
CCACCAATGACACGACCATC+AGG 0.497274 8_2:+17618062 None:intergenic
GGCCAAGAATTGAGAGATGT+TGG 0.498691 8_2:+17617276 None:intergenic
GATGGCTCGCGTAATCGAAC+GGG 0.499725 8_2:-17618110 Msa1237930:CDS
GGGAATTATGCAATTCATGT+TGG 0.500890 8_2:+17622268 None:intergenic
TCATGTTGGTTTCCAGAACC+AGG 0.501139 8_2:+17622282 None:intergenic
GGAGAATTAAAGAGAGATGA+TGG 0.507674 8_2:+17623525 None:intergenic
CGGGCTTGAAGTTCTGGGAG+AGG 0.508371 8_2:-17616881 Msa1237930:three_prime_UTR
CACAGTAGAGACAGCACCAT+TGG 0.508689 8_2:+17618614 None:intergenic
GTGGAAGGCCTAGAAAATAT+GGG 0.512348 8_2:-17622074 Msa1237930:CDS
GATAATTGGGAGCTTTATGT+GGG 0.512351 8_2:-17617430 Msa1237930:CDS
GTTTCTCTTGCCAGTCCTGA+TGG 0.512425 8_2:-17618077 Msa1237930:CDS
GGATATGCGTAATTCCCATA+TGG 0.512750 8_2:-17617238 Msa1237930:CDS
GGATCTCAATGTATCAATGT+AGG 0.515058 8_2:-17622147 Msa1237930:CDS
CAATGTAGGTGCTCCTTCTG+GGG 0.519453 8_2:-17622133 Msa1237930:CDS
GGGGCTTGAATTTAAATGCA+TGG 0.521445 8_2:-17622367 Msa1237930:exon
CAACCGGTGAACCTGCCAAA+AGG 0.524135 8_2:-17622101 Msa1237930:CDS
GCGGTCGAGGGCGCCCTCCA+GGG 0.524809 8_2:-17621972 Msa1237930:CDS
CCTGATGGTCGTGTCATTGG+TGG 0.525149 8_2:-17618062 Msa1237930:CDS
CATGGATCGAGGGGACCAAA+TGG 0.527963 8_2:-17622349 Msa1237930:CDS
TTCGAGATACTAAGCCTGAC+AGG 0.527978 8_2:-17618155 Msa1237930:CDS
AATTTAAATGCATGGATCGA+GGG 0.528702 8_2:-17622359 Msa1237930:exon
GATTCAGAAGATCAAGAAGT+TGG 0.530546 8_2:-17617375 Msa1237930:CDS
TTGTCAGGCTTCGACATCTG+GGG 0.531720 8_2:-17618586 Msa1237930:CDS
CTGCCAAAAGGAAGCGTGGA+AGG 0.533300 8_2:-17622089 Msa1237930:CDS
AATCCAGGGAAAACCTAGAC+CGG 0.535670 8_2:-17616756 Msa1237930:three_prime_UTR
CCTAGAAAATATGGGGCAGA+TGG 0.536022 8_2:-17622066 Msa1237930:CDS
TAGAACTATATTTGTTATGT+CGG 0.537936 8_2:-17618637 Msa1237930:CDS
AGATCAAGAAGTTGGTGTAG+AGG 0.538029 8_2:-17617367 Msa1237930:CDS
GCGTTTCTGGACTTGCGGTA+CGG 0.541681 8_2:+17621993 None:intergenic
TTGTTGTCAAAGATTGTGAA+GGG 0.543171 8_2:-17622387 Msa1237930:five_prime_UTR
TTTGTTGTCAAAGATTGTGA+AGG 0.545465 8_2:-17622388 Msa1237930:five_prime_UTR
GAATTTAAATGCATGGATCG+AGG 0.552782 8_2:-17622360 Msa1237930:exon
ATTGGGAGCTTTATGTGGGG+TGG 0.553014 8_2:-17617426 Msa1237930:CDS
AATCAATGAGATTAGCAGAA+GGG 0.553824 8_2:-17616929 Msa1237930:three_prime_UTR
ATATTTGTTATGTCGGCCAA+TGG 0.560132 8_2:-17618630 Msa1237930:CDS
ATCAATGAGATTAGCAGAAG+GGG 0.562117 8_2:-17616928 Msa1237930:three_prime_UTR
AGAGAAAATCAAAACTCAAG+AGG 0.563003 8_2:+17623397 None:intergenic
CTTCGACAATATGGTGACTC+GGG 0.563104 8_2:-17616900 Msa1237930:three_prime_UTR
CATGAATTGCATAATTCCCC+TGG 0.566365 8_2:-17622264 Msa1237930:CDS
TCGTTTCAATCAAGTATTGG+TGG 0.568199 8_2:-17622216 Msa1237930:CDS
AAGTCCAGAAACGCGGTCGA+GGG 0.568708 8_2:-17621984 Msa1237930:CDS
TCTTCGACAATATGGTGACT+CGG 0.572372 8_2:-17616901 Msa1237930:three_prime_UTR
GTAGAGGAAAATCATCATCA+TGG 0.572777 8_2:-17617351 Msa1237930:CDS
TGTCAGGCTTCGACATCTGG+GGG 0.576990 8_2:-17618585 Msa1237930:CDS
AATTAAAGAGAGATGATGGT+GGG 0.580686 8_2:+17623529 None:intergenic
GCATACTTCTCCAATTGCAA+TGG 0.581715 8_2:+17619442 None:intergenic
AATTTGATTAATGTCAGCTA+TGG 0.585484 8_2:-17617060 Msa1237930:three_prime_UTR
ATGGAAATAATCTTGTTAGA+GGG 0.585553 8_2:+17616856 None:intergenic
TATTCTTCATGAAGATGTGG+TGG 0.586699 8_2:+17623461 None:intergenic
CTTGCGGTACGGTTCCAGGA+TGG 0.586783 8_2:+17622004 None:intergenic
AACAAATTTGAAACAAAACC+CGG 0.588179 8_2:+17616737 None:intergenic
AATGTAGGTGCTCCTTCTGG+GGG 0.588716 8_2:-17622132 Msa1237930:CDS
TATTGGATCCACGATGCCGA+TGG 0.589524 8_2:-17622184 Msa1237930:CDS
GAGAAAATCAAAACTCAAGA+GGG 0.590568 8_2:+17623398 None:intergenic
GATGGTCGTGTCATTGGTGG+AGG 0.591277 8_2:-17618059 Msa1237930:CDS
TTTCAATCAAGTATTGGTGG+TGG 0.596117 8_2:-17622213 Msa1237930:CDS
GTCATTGGTGGAGGTGTCGG+TGG 0.597084 8_2:-17618050 Msa1237930:CDS
TTTATGCAGAGAGGATTACC+TGG 0.598429 8_2:-17622300 Msa1237930:CDS
GAATTGTGATTGTGATCAAG+TGG 0.598876 8_2:+17623434 None:intergenic
ATTTAAATGCATGGATCGAG+GGG 0.603640 8_2:-17622358 Msa1237930:exon
TGGGAATTACGCATATCCAA+TGG 0.604904 8_2:+17617243 None:intergenic
AATGACACGACCATCAGGAC+TGG 0.614331 8_2:+17618067 None:intergenic
TCATATTCTTCATGAAGATG+TGG 0.616220 8_2:+17623458 None:intergenic
GCATCATACTTTATGCAGAG+AGG 0.620965 8_2:-17622309 Msa1237930:CDS
AACGATGAATTGGTATTCAG+CGG 0.622414 8_2:+17622234 None:intergenic
TAATCAATGAGATTAGCAGA+AGG 0.622698 8_2:-17616930 Msa1237930:three_prime_UTR
AAATGCTACTCATTGCAACT+GGG 0.624007 8_2:+17617319 None:intergenic
ATGGACATTGATTTAATGCG+TGG 0.625354 8_2:-17617219 Msa1237930:CDS
CGACCGCGTTTCTGGACTTG+CGG 0.626523 8_2:+17621988 None:intergenic
ATCCAGGGAAAACCTAGACC+GGG 0.634249 8_2:-17616755 Msa1237930:three_prime_UTR
GGATCGAGGGGACCAAATGG+CGG 0.637165 8_2:-17622346 Msa1237930:CDS
TGTTGTCAAAGATTGTGAAG+GGG 0.637737 8_2:-17622386 Msa1237930:five_prime_UTR
TGGACATTGATTTAATGCGT+GGG 0.639036 8_2:-17617218 Msa1237930:CDS
GAATTAAAGAGAGATGATGG+TGG 0.647012 8_2:+17623528 None:intergenic
TACTTGGTTGCTGATAACGA+TGG 0.650007 8_2:-17618128 Msa1237930:CDS
CCAATTCCAGAAGAATCCAT+CGG 0.651481 8_2:+17622168 None:intergenic
GAACCTGCCAAAAGGAAGCG+TGG 0.653132 8_2:-17622093 Msa1237930:CDS
TGGAAGGCCTAGAAAATATG+GGG 0.659615 8_2:-17622073 Msa1237930:CDS
ATAATTGGGAGCTTTATGTG+GGG 0.667814 8_2:-17617429 Msa1237930:CDS
AGAAGAATCCATCGGCATCG+TGG 0.669599 8_2:+17622176 None:intergenic
TTAAATGTGACAGAGATAGG+TGG 0.683753 8_2:-17622450 Msa1237930:intron
ATTGCAATGGAGATGACATG+AGG 0.685631 8_2:+17619455 None:intergenic
TATTCAGCGGACGAATACCA+GGG 0.688364 8_2:+17622247 None:intergenic
ATTCAGCGGACGAATACCAG+GGG 0.743678 8_2:+17622248 None:intergenic
GTACCGCAAGTCCAGAAACG+CGG 0.756258 8_2:-17621991 Msa1237930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTTTTTCTTATTTTT+TGG - chr8_2:17617357-17617376 Msa1237930:CDS 10.0%
!!! ATGATTTAAATTTGTTAAAT+GGG + chr8_2:17619602-17619621 None:intergenic 10.0%
!!! AATGATTTAAATTTGTTAAA+TGG + chr8_2:17619603-17619622 None:intergenic 10.0%
!!! TAACAAGAATTTTTTTATTT+TGG - chr8_2:17619758-17619777 Msa1237930:intron 10.0%
!!! TAGATGTTTTTTTTTTTTTT+TGG - chr8_2:17620032-17620051 Msa1237930:intron 10.0%
!!! AGATGTTTTTTTTTTTTTTT+GGG - chr8_2:17620033-17620052 Msa1237930:intron 10.0%
!! ATTACTTATATTTATTCATA+CGG - chr8_2:17620571-17620590 Msa1237930:intron 10.0%
!! TAAAATTGAAACTAAAATAT+TGG + chr8_2:17621255-17621274 None:intergenic 10.0%
!!! GTGTAAATTTTATAAAATAA+GGG + chr8_2:17621346-17621365 None:intergenic 10.0%
!!! AGAATTTAATCAATTTTTAT+AGG - chr8_2:17622157-17622176 Msa1237930:CDS 10.0%
!!! TGCATAATTTTATTTTTCTA+GGG + chr8_2:17616728-17616747 None:intergenic 15.0%
!!! TTGCATAATTTTATTTTTCT+AGG + chr8_2:17616729-17616748 None:intergenic 15.0%
!! TGTAAAAAAAAAAAAAGGAA+GGG + chr8_2:17616868-17616887 None:intergenic 15.0%
!! ATGTAAAAAAAAAAAAAGGA+AGG + chr8_2:17616869-17616888 None:intergenic 15.0%
!! CAGAATGTAAAAAAAAAAAA+AGG + chr8_2:17616873-17616892 None:intergenic 15.0%
!!! TAATGTTAAAGATTTTGTTA+TGG - chr8_2:17617444-17617463 Msa1237930:intron 15.0%
!! AGAAACATGAAAATTAAAAA+AGG + chr8_2:17617534-17617553 None:intergenic 15.0%
!!! ATTTTTTTATTTGTTCATAC+CGG - chr8_2:17618743-17618762 Msa1237930:intron 15.0%
!! ATTTAATCAGTAAAATCTTT+GGG + chr8_2:17619290-17619309 None:intergenic 15.0%
!! AATTTAATCAGTAAAATCTT+TGG + chr8_2:17619291-17619310 None:intergenic 15.0%
!! TTGTATTGAAACAAATATAA+AGG + chr8_2:17619480-17619499 None:intergenic 15.0%
!!! TGTGTATTAAAATTTAAAAC+AGG + chr8_2:17620003-17620022 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTGGGAT+TGG - chr8_2:17620038-17620057 Msa1237930:intron 15.0%
!!! TTTTTTTTTTTTTTGGGATT+GGG - chr8_2:17620039-17620058 Msa1237930:intron 15.0%
!!! GCTTTTCTTTTTTTAAATTA+CGG - chr8_2:17620224-17620243 Msa1237930:intron 15.0%
!!! TTACTTTTCATTTTAAATTG+CGG + chr8_2:17620353-17620372 None:intergenic 15.0%
!! TATATATTACATAAAGACTT+AGG + chr8_2:17620445-17620464 None:intergenic 15.0%
!! TAAGTCTTTATGTAATATAT+AGG - chr8_2:17620444-17620463 Msa1237930:intron 15.0%
!! AATCATAAATAATAGATATG+TGG + chr8_2:17621314-17621333 None:intergenic 15.0%
!!! GGTGTAAATTTTATAAAATA+AGG + chr8_2:17621347-17621366 None:intergenic 15.0%
!! CTAGTAATAATTTGATAAAA+TGG + chr8_2:17621460-17621479 None:intergenic 15.0%
!!! TTGCTTATTTTATATCAATA+CGG - chr8_2:17621503-17621522 Msa1237930:intron 15.0%
!!! TTTTAAAATTTTCGGATTTT+TGG + chr8_2:17621571-17621590 None:intergenic 15.0%
!!! ATTCTTTTGTATATATGATT+AGG - chr8_2:17622298-17622317 Msa1237930:CDS 15.0%
!!! TTGATTTTAATAACTACTTA+AGG - chr8_2:17622937-17622956 Msa1237930:intron 15.0%
!!! AGAGTTTAATTTTGATAATA+TGG + chr8_2:17623012-17623031 None:intergenic 15.0%
!!! TTTCATGTTTCTATATAGTT+TGG - chr8_2:17617542-17617561 Msa1237930:intron 20.0%
!!! TTGTTATTTTAACCAAAGAT+CGG + chr8_2:17617840-17617859 None:intergenic 20.0%
!! CAAATAAAGTTTATCAACAA+TGG + chr8_2:17617884-17617903 None:intergenic 20.0%
!! TTGTTAATTCAGTTCATTAA+GGG + chr8_2:17618778-17618797 None:intergenic 20.0%
!! TTAATGAACTGAATTAACAA+CGG - chr8_2:17618778-17618797 Msa1237930:intron 20.0%
!! TTTAATCAGTAAAATCTTTG+GGG + chr8_2:17619289-17619308 None:intergenic 20.0%
!! AAATATTATCTTAGTGACAA+AGG + chr8_2:17619446-17619465 None:intergenic 20.0%
!! AAAATATGCATCAATATTTC+TGG + chr8_2:17619518-17619537 None:intergenic 20.0%
!!! ATATTGATGCATATTTTTAC+TGG - chr8_2:17619521-17619540 Msa1237930:intron 20.0%
!!! TATTGATGCATATTTTTACT+GGG - chr8_2:17619522-17619541 Msa1237930:intron 20.0%
!! AATAAGCTTTCAACTATATT+AGG + chr8_2:17619645-17619664 None:intergenic 20.0%
!!! TGAAAGCTTATTTTTATAGT+TGG - chr8_2:17619653-17619672 Msa1237930:intron 20.0%
!! ATTGTCATCAAAAATATACT+TGG + chr8_2:17619709-17619728 None:intergenic 20.0%
!!! CAAATTTTGTTTTCTTACAT+AGG - chr8_2:17619802-17619821 Msa1237930:intron 20.0%
!! TTAAAAATAAATCTTGACCT+AGG - chr8_2:17619836-17619855 Msa1237930:intron 20.0%
!!! ATTAAAATTTAAAACAGGAC+AGG + chr8_2:17619998-17620017 None:intergenic 20.0%
!!! TTTTTTTTTTTTTGGGATTG+GGG - chr8_2:17620040-17620059 Msa1237930:intron 20.0%
!! TAAATAGGTCAAAATGTATA+TGG - chr8_2:17620485-17620504 Msa1237930:intron 20.0%
!!! GAGATTAGTTTTTAATGAAA+TGG - chr8_2:17620801-17620820 Msa1237930:intron 20.0%
!! TTAACATAAATCAATCACTT+AGG + chr8_2:17620948-17620967 None:intergenic 20.0%
!!! GTGATTGATTTATGTTAATT+TGG - chr8_2:17620950-17620969 Msa1237930:intron 20.0%
!!! TAGCTTTTAAAAGCTTTAAT+TGG - chr8_2:17621220-17621239 Msa1237930:intron 20.0%
!!! AGCTTTTAAAAGCTTTAATT+GGG - chr8_2:17621221-17621240 Msa1237930:intron 20.0%
!! TTATAAAATTTACACCTATC+TGG - chr8_2:17621351-17621370 Msa1237930:intron 20.0%
!!! CCTGTAACTTTTAAAATTTT+CGG + chr8_2:17621579-17621598 None:intergenic 20.0%
!! TAAATGCTAAAACATATCTT+TGG + chr8_2:17621624-17621643 None:intergenic 20.0%
!!! TTAACAGTGCTTTTTTTTAA+TGG - chr8_2:17621650-17621669 Msa1237930:intron 20.0%
!!! TAGAACTATATTTGTTATGT+CGG - chr8_2:17621882-17621901 Msa1237930:intron 20.0%
!! TGATTATAAACTTCATAACA+TGG + chr8_2:17622217-17622236 None:intergenic 20.0%
!!! TTTCTATGTTTCTAATTTTG+AGG + chr8_2:17622574-17622593 None:intergenic 20.0%
!! ATCTAACTATTCTAATTGAT+TGG + chr8_2:17622906-17622925 None:intergenic 20.0%
!! TTAAATATGTATACCAATAC+TGG + chr8_2:17623352-17623371 None:intergenic 20.0%
!!! GTATACATATTTAAGATTCA+TGG - chr8_2:17623358-17623377 Msa1237930:intron 20.0%
!!! ATTTTATTTTTCTAGGGATG+AGG + chr8_2:17616722-17616741 None:intergenic 25.0%
! GAAAGTTGAAAAATGTTCAA+CGG + chr8_2:17617028-17617047 None:intergenic 25.0%
! ATGTGTTAGTATTCATTCAT+AGG - chr8_2:17617181-17617200 Msa1237930:three_prime_UTR 25.0%
! GCTTAAGAAAAAACACAAAA+AGG + chr8_2:17617284-17617303 None:intergenic 25.0%
!!! TTTTGTTTTAGTGTAGCATT+TGG - chr8_2:17617306-17617325 Msa1237930:CDS 25.0%
!!! GTTAAAGATTTTGTTATGGT+TGG - chr8_2:17617448-17617467 Msa1237930:intron 25.0%
! TTACAAAATCAATTAGAGTG+AGG + chr8_2:17617596-17617615 None:intergenic 25.0%
! AAGTTTATCAACAATGGTAA+TGG + chr8_2:17617878-17617897 None:intergenic 25.0%
!!! AACCTTTCATTTTTGATTTG+TGG - chr8_2:17617908-17617927 Msa1237930:intron 25.0%
! AACCACAAATCAAAAATGAA+AGG + chr8_2:17617913-17617932 None:intergenic 25.0%
!!! ATTGGATTTCATTGATTTCA+TGG - chr8_2:17618009-17618028 Msa1237930:intron 25.0%
!! ATTTTAAATGTGACAGAGAT+AGG - chr8_2:17618066-17618085 Msa1237930:CDS 25.0%
! TTTGGATTGCTGAATATTAA+AGG - chr8_2:17618097-17618116 Msa1237930:CDS 25.0%
! TTGGATTGCTGAATATTAAA+GGG - chr8_2:17618098-17618117 Msa1237930:CDS 25.0%
!!! CTATTCGACTTTTTATTTTG+TGG - chr8_2:17618609-17618628 Msa1237930:CDS 25.0%
! GTTGTTAATTCAGTTCATTA+AGG + chr8_2:17618779-17618798 None:intergenic 25.0%
! TTACTGAATACAAAGATAGA+TGG - chr8_2:17618844-17618863 Msa1237930:intron 25.0%
! TACTGAATACAAAGATAGAT+GGG - chr8_2:17618845-17618864 Msa1237930:intron 25.0%
! TTGAAAAACAAGTCAAGTAA+CGG + chr8_2:17619070-17619089 None:intergenic 25.0%
! ATGTAATTGCTGAAACAATA+GGG + chr8_2:17619258-17619277 None:intergenic 25.0%
! CTATATTAGGTAAATAGACT+AGG + chr8_2:17619632-17619651 None:intergenic 25.0%
!!! TTTTTTTTTTTTGGGATTGG+GGG - chr8_2:17620041-17620060 Msa1237930:intron 25.0%
! TCAAAATGTATATGGATTCA+AGG - chr8_2:17620493-17620512 Msa1237930:intron 25.0%
!! TATCTTAGAACGATTTTATG+CGG - chr8_2:17620839-17620858 Msa1237930:intron 25.0%
!! TGGTATAAAGAAGTATAACT+TGG - chr8_2:17620897-17620916 Msa1237930:intron 25.0%
!! GGTATAAAGAAGTATAACTT+GGG - chr8_2:17620898-17620917 Msa1237930:intron 25.0%
!!! ATATGTCTGTCGTTTATTTT+TGG - chr8_2:17621143-17621162 Msa1237930:intron 25.0%
!! AGTACCTTTAATCTATGTTT+TGG - chr8_2:17621181-17621200 Msa1237930:intron 25.0%
! TAAAAGCTAATCTACCAAAT+TGG + chr8_2:17621209-17621228 None:intergenic 25.0%
!!! TTGAAGCTTTGAAAAGATAA+GGG + chr8_2:17621279-17621298 None:intergenic 25.0%
!!! CCGAAAATTTTAAAAGTTAC+AGG - chr8_2:17621576-17621595 Msa1237930:intron 25.0%
! AGGACCAAAGAAATAAAATA+AGG - chr8_2:17621596-17621615 Msa1237930:intron 25.0%
! GGACCAAAGAAATAAAATAA+GGG - chr8_2:17621597-17621616 Msa1237930:intron 25.0%
!!! ATGGAAGTACTTTTTTAGAA+AGG - chr8_2:17621669-17621688 Msa1237930:intron 25.0%
!!! TGGAAGTACTTTTTTAGAAA+GGG - chr8_2:17621670-17621689 Msa1237930:intron 25.0%
! ACATGTGACAAAAATTCAAA+CGG + chr8_2:17621755-17621774 None:intergenic 25.0%
! CTTACATATGATTACACAAA+TGG + chr8_2:17621782-17621801 None:intergenic 25.0%
! GACATAACAAATATAGTTCT+AGG + chr8_2:17621883-17621902 None:intergenic 25.0%
! TTATACATATCAACCCTTTA+TGG - chr8_2:17622085-17622104 Msa1237930:CDS 25.0%
! TTCACTAACATTTCCATAAA+GGG + chr8_2:17622101-17622120 None:intergenic 25.0%
! TTTCACTAACATTTCCATAA+AGG + chr8_2:17622102-17622121 None:intergenic 25.0%
!! TAAGCAATTCTTCTAAAGAA+TGG + chr8_2:17622132-17622151 None:intergenic 25.0%
!! TTTTTATAGGCAAATGTTAG+TGG - chr8_2:17622170-17622189 Msa1237930:CDS 25.0%
!! TTATGAACTTTTGCTTCAAT+AGG - chr8_2:17622336-17622355 Msa1237930:CDS 25.0%
!! TATGAACTTTTGCTTCAATA+GGG - chr8_2:17622337-17622356 Msa1237930:CDS 25.0%
! TAGCAATCCAAATAAAACAA+GGG + chr8_2:17623043-17623062 None:intergenic 25.0%
! TTAGCAATCCAAATAAAACA+AGG + chr8_2:17623044-17623063 None:intergenic 25.0%
! CATTAAATCAATGTCCATAT+GGG + chr8_2:17623298-17623317 None:intergenic 25.0%
!! TAGAATTCTTTCTTGACTTT+TGG - chr8_2:17623436-17623455 Msa1237930:five_prime_UTR 25.0%
! AATTTGATTAATGTCAGCTA+TGG - chr8_2:17623459-17623478 Msa1237930:five_prime_UTR 25.0%
!!! TTTGATGATTTTGCTTTTTG+TGG - chr8_2:17623535-17623554 Msa1237930:five_prime_UTR 25.0%
! ATGGAAATAATCTTGTTAGA+GGG + chr8_2:17623666-17623685 None:intergenic 25.0%
! AATGGAAATAATCTTGTTAG+AGG + chr8_2:17623667-17623686 None:intergenic 25.0%
! CTAACAAGATTATTTCCATT+AGG - chr8_2:17623667-17623686 Msa1237930:five_prime_UTR 25.0%
! TTTGTCATTAGATTGTTTCA+TGG - chr8_2:17623703-17623722 Msa1237930:five_prime_UTR 25.0%
!!! ATGATTTATTTCTGAATCCA+GGG - chr8_2:17623749-17623768 Msa1237930:five_prime_UTR 25.0%
!! AACAAATTTGAAACAAAACC+CGG + chr8_2:17623785-17623804 None:intergenic 25.0%
! AATTAAAGAGAGATGATGGT+GGG + chr8_2:17616993-17617012 None:intergenic 30.0%
AAATGTTCAACGGTTTCATA+TGG + chr8_2:17617018-17617037 None:intergenic 30.0%
TCATATTCTTCATGAAGATG+TGG + chr8_2:17617064-17617083 None:intergenic 30.0%
GAGAAAATCAAAACTCAAGA+GGG + chr8_2:17617124-17617143 None:intergenic 30.0%
AGAGAAAATCAAAACTCAAG+AGG + chr8_2:17617125-17617144 None:intergenic 30.0%
TATCTCTTTCTTATGCTTTG+AGG - chr8_2:17617211-17617230 Msa1237930:exon 30.0%
!! AAAGATTTTGTTATGGTTGG+TGG - chr8_2:17617451-17617470 Msa1237930:intron 30.0%
AAAAGGACCTTAAGACTAAA+AGG + chr8_2:17617660-17617679 None:intergenic 30.0%
TAAATGTGAAAAGCAAGCAA+AGG + chr8_2:17617689-17617708 None:intergenic 30.0%
ATCAATGAAATCCAATATGC+AGG + chr8_2:17618005-17618024 None:intergenic 30.0%
! TTTGTTGTCAAAGATTGTGA+AGG - chr8_2:17618131-17618150 Msa1237930:CDS 30.0%
TTGTTGTCAAAGATTGTGAA+GGG - chr8_2:17618132-17618151 Msa1237930:CDS 30.0%
AATTTAAATGCATGGATCGA+GGG - chr8_2:17618160-17618179 Msa1237930:CDS 30.0%
ACTTGATTGAAACGATGAAT+TGG + chr8_2:17618298-17618317 None:intergenic 30.0%
TCATCGTTTCAATCAAGTAT+TGG - chr8_2:17618300-17618319 Msa1237930:intron 30.0%
CTATACAATCAAACAACACA+TGG + chr8_2:17618699-17618718 None:intergenic 30.0%
TTGAAAAACATGCCAAGTAA+CGG + chr8_2:17619186-17619205 None:intergenic 30.0%
GATGTAATTGCTGAAACAAT+AGG + chr8_2:17619259-17619278 None:intergenic 30.0%
! CATCGAAACTTAGACTATTT+TGG - chr8_2:17619321-17619340 Msa1237930:intron 30.0%
!!! ACTTAGACTATTTTGGTCAT+TGG - chr8_2:17619328-17619347 Msa1237930:intron 30.0%
! ACTACTAGGAAACAATGTTT+TGG + chr8_2:17619409-17619428 None:intergenic 30.0%
! AACAAATAATGTGGACTACT+AGG + chr8_2:17619423-17619442 None:intergenic 30.0%
TGACAAAGGAACAAATAATG+TGG + chr8_2:17619432-17619451 None:intergenic 30.0%
!! ATGCATCAATATTTCTGGTA+TGG + chr8_2:17619513-17619532 None:intergenic 30.0%
ACTGGGATTATAAGTGAAAT+TGG - chr8_2:17619539-17619558 Msa1237930:intron 30.0%
! GCCTTATTATTAAATTGACC+TGG - chr8_2:17619576-17619595 Msa1237930:intron 30.0%
GCCAGGTCAATTTAATAATA+AGG + chr8_2:17619580-17619599 None:intergenic 30.0%
!! TTAAATTTGTTAAATGGGCC+AGG + chr8_2:17619597-17619616 None:intergenic 30.0%
ATTAGGTAAATAGACTAGGT+AGG + chr8_2:17619628-17619647 None:intergenic 30.0%
AATAAATCTTGACCTAGGTT+AGG - chr8_2:17619841-17619860 Msa1237930:intron 30.0%
!!! TTTTTTTTTTTGGGATTGGG+GGG - chr8_2:17620042-17620061 Msa1237930:intron 30.0%
! TTTTTATAGTGAGGCCTTTA+GGG - chr8_2:17620156-17620175 Msa1237930:intron 30.0%
TATGTAATATATAGGCCACT+AGG - chr8_2:17620452-17620471 Msa1237930:intron 30.0%
ATTTAAAGAGTTAGTCCTAG+TGG + chr8_2:17620470-17620489 None:intergenic 30.0%
CTAGGACTAACTCTTTAAAT+AGG - chr8_2:17620470-17620489 Msa1237930:intron 30.0%
GACTATAAGACATTTCAGAT+AGG - chr8_2:17620606-17620625 Msa1237930:intron 30.0%
CATTAAAAACTAATCTCAGC+CGG + chr8_2:17620798-17620817 None:intergenic 30.0%
GATAAATTGTTGTGAATCTG+TGG - chr8_2:17620877-17620896 Msa1237930:intron 30.0%
!!! TGTTTTGAGTTGTTATTTGC+AGG - chr8_2:17621004-17621023 Msa1237930:intron 30.0%
GGAACCAAAACATAGATTAA+AGG + chr8_2:17621188-17621207 None:intergenic 30.0%
!!! TCTATGTTTTGGTTCCAATT+TGG - chr8_2:17621192-17621211 Msa1237930:intron 30.0%
!! GTTGAAGCTTTGAAAAGATA+AGG + chr8_2:17621280-17621299 None:intergenic 30.0%
! TATCTTTTCAAAGCTTCAAC+TGG - chr8_2:17621280-17621299 Msa1237930:intron 30.0%
! ATCTTTTCAAAGCTTCAACT+GGG - chr8_2:17621281-17621300 Msa1237930:intron 30.0%
TGCTAGTGTTACATAGAAAA+GGG + chr8_2:17621379-17621398 None:intergenic 30.0%
CGCTCAAATTGTATTCAAAA+AGG + chr8_2:17621530-17621549 None:intergenic 30.0%
TGAATACAATTTGAGCGAAA+AGG - chr8_2:17621533-17621552 Msa1237930:intron 30.0%
!!! GGTCCCTTATTTTATTTCTT+TGG + chr8_2:17621603-17621622 None:intergenic 30.0%
! TAAATCCTTTTCTTCTGTGT+AGG - chr8_2:17621819-17621838 Msa1237930:intron 30.0%
! ATGAACTTTTGCTTCAATAG+GGG - chr8_2:17622338-17622357 Msa1237930:CDS 30.0%
CAAAGTAAACAGAGGTAAAA+GGG + chr8_2:17622654-17622673 None:intergenic 30.0%
ACAAAGTAAACAGAGGTAAA+AGG + chr8_2:17622655-17622674 None:intergenic 30.0%
! TGTTTTCACAAAGTAAACAG+AGG + chr8_2:17622662-17622681 None:intergenic 30.0%
! CTTATGTTTTCTGTTCGTAT+AGG - chr8_2:17622781-17622800 Msa1237930:intron 30.0%
TTTGGATTGCTAAGTTTGAT+TGG - chr8_2:17623051-17623070 Msa1237930:intron 30.0%
ATGACTATCAGGTGATAATT+GGG - chr8_2:17623076-17623095 Msa1237930:intron 30.0%
!! TTCTTCTTGTTCTTGGTTTT+TGG + chr8_2:17623120-17623139 None:intergenic 30.0%
ATCTTCATTCTTCTTGTTCT+TGG + chr8_2:17623127-17623146 None:intergenic 30.0%
GCATTAAATCAATGTCCATA+TGG + chr8_2:17623299-17623318 None:intergenic 30.0%
TTATTAGCATACACCAGTAT+TGG - chr8_2:17623336-17623355 Msa1237930:intron 30.0%
TAATCAATGAGATTAGCAGA+AGG - chr8_2:17623589-17623608 Msa1237930:five_prime_UTR 30.0%
AATCAATGAGATTAGCAGAA+GGG - chr8_2:17623590-17623609 Msa1237930:five_prime_UTR 30.0%
AAAATTGCAAGATCTCCTAA+TGG + chr8_2:17623685-17623704 None:intergenic 30.0%
!! GATGATTTATTTCTGAATCC+AGG - chr8_2:17623748-17623767 Msa1237930:five_prime_UTR 30.0%
! GAATTAAAGAGAGATGATGG+TGG + chr8_2:17616994-17617013 None:intergenic 35.0%
GGAGAATTAAAGAGAGATGA+TGG + chr8_2:17616997-17617016 None:intergenic 35.0%
TATTCTTCATGAAGATGTGG+TGG + chr8_2:17617061-17617080 None:intergenic 35.0%
GAATTGTGATTGTGATCAAG+TGG + chr8_2:17617088-17617107 None:intergenic 35.0%
ACACAAAAAGGCTACAACTT+TGG + chr8_2:17617272-17617291 None:intergenic 35.0%
TTTGTGAGTGTATGCATCAA+AGG - chr8_2:17617389-17617408 Msa1237930:CDS 35.0%
TTGTGAGTGTATGCATCAAA+GGG - chr8_2:17617390-17617409 Msa1237930:CDS 35.0%
ATCAAAGGGTAAGCTTCAAA+GGG - chr8_2:17617404-17617423 Msa1237930:CDS 35.0%
!!! TGGTTTGCCTTTTAGTCTTA+AGG - chr8_2:17617650-17617669 Msa1237930:intron 35.0%
GCAAGCAAAGGAAAAAGAAA+AGG + chr8_2:17617677-17617696 None:intergenic 35.0%
! ACCAAGTTGTTGATGAAGTA+AGG - chr8_2:17617753-17617772 Msa1237930:intron 35.0%
ACCTTACTTCATCAACAACT+TGG + chr8_2:17617757-17617776 None:intergenic 35.0%
! AGTTGTTGATGAAGTAAGGT+CGG - chr8_2:17617757-17617776 Msa1237930:intron 35.0%
TAAGCAAAGTCTAGCAAAGA+GGG + chr8_2:17617809-17617828 None:intergenic 35.0%
TTAAATGTGACAGAGATAGG+TGG - chr8_2:17618069-17618088 Msa1237930:CDS 35.0%
TGTTGTCAAAGATTGTGAAG+GGG - chr8_2:17618133-17618152 Msa1237930:CDS 35.0%
GAATTTAAATGCATGGATCG+AGG - chr8_2:17618159-17618178 Msa1237930:CDS 35.0%
ATTTAAATGCATGGATCGAG+GGG - chr8_2:17618161-17618180 Msa1237930:CDS 35.0%
CATAAAGTATGATGCAGAAC+CGG + chr8_2:17618205-17618224 None:intergenic 35.0%
GGGAATTATGCAATTCATGT+TGG + chr8_2:17618254-17618273 None:intergenic 35.0%
AACGATGAATTGGTATTCAG+CGG + chr8_2:17618288-17618307 None:intergenic 35.0%
!! TCGTTTCAATCAAGTATTGG+TGG - chr8_2:17618303-17618322 Msa1237930:intron 35.0%
!! TTTCAATCAAGTATTGGTGG+TGG - chr8_2:17618306-17618325 Msa1237930:intron 35.0%
GGATCTCAATGTATCAATGT+AGG - chr8_2:17618372-17618391 Msa1237930:intron 35.0%
! AAACAACAGTTGGCTTCTTT+CGG - chr8_2:17618579-17618598 Msa1237930:CDS 35.0%
TCATTAAGGGATTAGAATGC+CGG + chr8_2:17618765-17618784 None:intergenic 35.0%
TTTAATAATAAGGCCTAGCC+TGG + chr8_2:17619570-17619589 None:intergenic 35.0%
!! CTTTAAAGAGATAGCTCTAG+TGG + chr8_2:17619680-17619699 None:intergenic 35.0%
!!! CCTTAATTTTGAAACAGGAC+AGG + chr8_2:17620105-17620124 None:intergenic 35.0%
CCTGTCCTGTTTCAAAATTA+AGG - chr8_2:17620102-17620121 Msa1237930:intron 35.0%
!!! TTGGGCCTTAATTTTGAAAC+AGG + chr8_2:17620110-17620129 None:intergenic 35.0%
TCAAAATTAAGGCCCAAGTT+TGG - chr8_2:17620113-17620132 Msa1237930:intron 35.0%
CAGATAAACAGACCAAACTT+GGG + chr8_2:17620128-17620147 None:intergenic 35.0%
TCAGATAAACAGACCAAACT+TGG + chr8_2:17620129-17620148 None:intergenic 35.0%
AAGTTTGGTCTGTTTATCTG+AGG - chr8_2:17620128-17620147 Msa1237930:intron 35.0%
CTAAAGGCCTCACTATAAAA+AGG + chr8_2:17620157-17620176 None:intergenic 35.0%
! CTTTTTATAGTGAGGCCTTT+AGG - chr8_2:17620155-17620174 Msa1237930:intron 35.0%
TTTGGATTTGTGTGTTTGGA+TGG + chr8_2:17620396-17620415 None:intergenic 35.0%
! AGCTTTTGGATTTGTGTGTT+TGG + chr8_2:17620400-17620419 None:intergenic 35.0%
TCCAAAAGCTTACCTCTTAA+TGG - chr8_2:17620410-17620429 Msa1237930:intron 35.0%
CCAAAAGCTTACCTCTTAAT+GGG - chr8_2:17620411-17620430 Msa1237930:intron 35.0%
CTTGTCCTTATGCATTTCAT+AGG + chr8_2:17620729-17620748 None:intergenic 35.0%
!! TTTGAGTTGTTATTTGCAGG+TGG - chr8_2:17621007-17621026 Msa1237930:intron 35.0%
GCTAGTGTTACATAGAAAAG+GGG + chr8_2:17621378-17621397 None:intergenic 35.0%
GTGCTAGTGTTACATAGAAA+AGG + chr8_2:17621380-17621399 None:intergenic 35.0%
ATGTAGCCATGTACACATAT+CGG + chr8_2:17621428-17621447 None:intergenic 35.0%
!! TGTCGACATGTCAGTTTTAT+TGG - chr8_2:17621480-17621499 Msa1237930:intron 35.0%
AATGTCCTACACAGAAGAAA+AGG + chr8_2:17621827-17621846 None:intergenic 35.0%
GGACATTGCAACAAAAATTC+TGG - chr8_2:17621840-17621859 Msa1237930:intron 35.0%
!! ATATTTGTTATGTCGGCCAA+TGG - chr8_2:17621889-17621908 Msa1237930:intron 35.0%
CATAACATGGCGATCATATA+AGG + chr8_2:17622204-17622223 None:intergenic 35.0%
! GTGCTAAAGAGACATTTTGA+AGG + chr8_2:17622265-17622284 None:intergenic 35.0%
!!! CTAATTTTGAGGTGAGAAAG+AGG + chr8_2:17622563-17622582 None:intergenic 35.0%
TCTGTTCGTATAGGAAATAG+TGG - chr8_2:17622790-17622809 Msa1237930:intron 35.0%
CTACTTAAGGTACACATGAT+TGG - chr8_2:17622950-17622969 Msa1237930:intron 35.0%
!!! CTGCAAACCCTTGTTTTATT+TGG - chr8_2:17623033-17623052 Msa1237930:intron 35.0%
! TTTGATTGGTCATGACTATC+AGG - chr8_2:17623065-17623084 Msa1237930:intron 35.0%
CATGACTATCAGGTGATAAT+TGG - chr8_2:17623075-17623094 Msa1237930:intron 35.0%
! TGATAATTGGGAGCTTTATG+TGG - chr8_2:17623088-17623107 Msa1237930:intron 35.0%
! GATAATTGGGAGCTTTATGT+GGG - chr8_2:17623089-17623108 Msa1237930:intron 35.0%
! ATAATTGGGAGCTTTATGTG+GGG - chr8_2:17623090-17623109 Msa1237930:intron 35.0%
GATTCAGAAGATCAAGAAGT+TGG - chr8_2:17623144-17623163 Msa1237930:intron 35.0%
GTAGAGGAAAATCATCATCA+TGG - chr8_2:17623168-17623187 Msa1237930:intron 35.0%
AAATGCTACTCATTGCAACT+GGG + chr8_2:17623203-17623222 None:intergenic 35.0%
!! ATGGACATTGATTTAATGCG+TGG - chr8_2:17623300-17623319 Msa1237930:intron 35.0%
!! TGGACATTGATTTAATGCGT+GGG - chr8_2:17623301-17623320 Msa1237930:intron 35.0%
! CTATGGTTGATTGACTTTAG+AGG - chr8_2:17623476-17623495 Msa1237930:five_prime_UTR 35.0%
!! CTCATATTTTTGTAGCTGTG+AGG - chr8_2:17623504-17623523 Msa1237930:five_prime_UTR 35.0%
!!! TGATTTTGCTTTTTGTGGCA+AGG - chr8_2:17623540-17623559 Msa1237930:five_prime_UTR 35.0%
ATCAATGAGATTAGCAGAAG+GGG - chr8_2:17623591-17623610 Msa1237930:five_prime_UTR 35.0%
CATCAAAGGGTAAGCTTCAA+AGG - chr8_2:17617403-17617422 Msa1237930:CDS 40.0%
TGCAGAAGGAACTAGATCAA+TGG + chr8_2:17617626-17617645 None:intergenic 40.0%
! TCTAGTTCCTTCTGCATGTT+TGG - chr8_2:17617630-17617649 Msa1237930:intron 40.0%
GTAAGCAAAGTCTAGCAAAG+AGG + chr8_2:17617810-17617829 None:intergenic 40.0%
TTAACCAAAGATCGGCAAGA+AGG + chr8_2:17617832-17617851 None:intergenic 40.0%
TCTTGTTAGTGCCTGCATAT+TGG - chr8_2:17617991-17618010 Msa1237930:intron 40.0%
CAGAGATAGGTGGTAAAGTT+TGG - chr8_2:17618079-17618098 Msa1237930:CDS 40.0%
GGGGCTTGAATTTAAATGCA+TGG - chr8_2:17618152-17618171 Msa1237930:CDS 40.0%
GCATCATACTTTATGCAGAG+AGG - chr8_2:17618210-17618229 Msa1237930:intron 40.0%
TTTATGCAGAGAGGATTACC+TGG - chr8_2:17618219-17618238 Msa1237930:intron 40.0%
CATGAATTGCATAATTCCCC+TGG - chr8_2:17618255-17618274 Msa1237930:intron 40.0%
CCAATTCCAGAAGAATCCAT+CGG + chr8_2:17618354-17618373 None:intergenic 40.0%
GTGGAAGGCCTAGAAAATAT+GGG - chr8_2:17618445-17618464 Msa1237930:intron 40.0%
TGGAAGGCCTAGAAAATATG+GGG - chr8_2:17618446-17618465 Msa1237930:intron 40.0%
!!! AGCCAACTGTTGTTTTTTCC+CGG + chr8_2:17618574-17618593 None:intergenic 40.0%
GGTCAAGCTTTCAAAAGTCT+TGG - chr8_2:17618882-17618901 Msa1237930:intron 40.0%
AAAAACATGCCAAGTAACGG+AGG + chr8_2:17619183-17619202 None:intergenic 40.0%
ATCTTGACCTAGGTTAGGTT+TGG - chr8_2:17619846-17619865 Msa1237930:intron 40.0%
TCTTGACCTAGGTTAGGTTT+GGG - chr8_2:17619847-17619866 Msa1237930:intron 40.0%
TCATGCCTGCATCCAAATTA+GGG + chr8_2:17619914-17619933 None:intergenic 40.0%
ATCATGCCTGCATCCAAATT+AGG + chr8_2:17619915-17619934 None:intergenic 40.0%
TTGGATGCAGGCATGATAAA+TGG - chr8_2:17619918-17619937 Msa1237930:intron 40.0%
! GCAGGCATGATAAATGGTTT+TGG - chr8_2:17619924-17619943 Msa1237930:intron 40.0%
AAAACAGGACAGGTCTATCA+TGG + chr8_2:17619988-17620007 None:intergenic 40.0%
AAACAGGACAGGTCTATCTA+CGG + chr8_2:17620094-17620113 None:intergenic 40.0%
TTTGGTCTGTTTATCTGAGG+TGG - chr8_2:17620131-17620150 Msa1237930:intron 40.0%
TCAATCCAAACACACCCTAA+AGG + chr8_2:17620173-17620192 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG - chr8_2:17620172-17620191 Msa1237930:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr8_2:17620173-17620192 Msa1237930:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr8_2:17620179-17620198 Msa1237930:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr8_2:17620183-17620202 Msa1237930:intron 40.0%
ATTTGTGTGTTTGGATGGAG+GGG + chr8_2:17620391-17620410 None:intergenic 40.0%
GATTTGTGTGTTTGGATGGA+GGG + chr8_2:17620392-17620411 None:intergenic 40.0%
! CCCATTAAGAGGTAAGCTTT+TGG + chr8_2:17620414-17620433 None:intergenic 40.0%
TTACCTCTTAATGGGATGAC+AGG - chr8_2:17620419-17620438 Msa1237930:intron 40.0%
TGCCTCCTATGAAATGCATA+AGG - chr8_2:17620721-17620740 Msa1237930:intron 40.0%
GTCCTTATGCATTTCATAGG+AGG + chr8_2:17620726-17620745 None:intergenic 40.0%
TTCTCAAGAACGTAGAGTTG+AGG + chr8_2:17620769-17620788 None:intergenic 40.0%
! ATCTCTAGTTCAGCTGGAAA+TGG - chr8_2:17621034-17621053 Msa1237930:intron 40.0%
ATTGCAATGGAGATGACATG+AGG + chr8_2:17621067-17621086 None:intergenic 40.0%
CATGTCATCTCCATTGCAAT+TGG - chr8_2:17621067-17621086 Msa1237930:intron 40.0%
GCATACTTCTCCAATTGCAA+TGG + chr8_2:17621080-17621099 None:intergenic 40.0%
TCAAAGCTTCAACTGGGAAT+TGG - chr8_2:17621287-17621306 Msa1237930:intron 40.0%
CAAAGCTTCAACTGGGAATT+GGG - chr8_2:17621288-17621307 Msa1237930:intron 40.0%
TGTAGCCATGTACACATATC+GGG + chr8_2:17621427-17621446 None:intergenic 40.0%
!!! TCGGATTTTTGGTTTCAACG+TGG + chr8_2:17621560-17621579 None:intergenic 40.0%
! AATTCTGGCATTTTCTCAGC+AGG - chr8_2:17621855-17621874 Msa1237930:intron 40.0%
! ATTCTGGCATTTTCTCAGCA+GGG - chr8_2:17621856-17621875 Msa1237930:intron 40.0%
GTTCTGTCACATATGAGGTT+TGG - chr8_2:17621956-17621975 Msa1237930:CDS 40.0%
! TACTTGGTTGCTGATAACGA+TGG - chr8_2:17622391-17622410 Msa1237930:five_prime_UTR 40.0%
AGAATAGCAGTTACCTGAAC+AGG + chr8_2:17622514-17622533 None:intergenic 40.0%
ACTGCTATTCTACTGCTGTA+AGG - chr8_2:17622523-17622542 Msa1237930:intron 40.0%
!! AGATCAAGAAGTTGGTGTAG+AGG - chr8_2:17623152-17623171 Msa1237930:intron 40.0%
GAAATGCTACTCATTGCAAC+TGG + chr8_2:17623204-17623223 None:intergenic 40.0%
GTTGGAGTCAGACTTTGATT+TGG + chr8_2:17623228-17623247 None:intergenic 40.0%
CTCCAACATCTCTCAATTCT+TGG - chr8_2:17623241-17623260 Msa1237930:intron 40.0%
TGGGAATTACGCATATCCAA+TGG + chr8_2:17623279-17623298 None:intergenic 40.0%
GGATATGCGTAATTCCCATA+TGG - chr8_2:17623281-17623300 Msa1237930:intron 40.0%
TCTTCGACAATATGGTGACT+CGG - chr8_2:17623618-17623637 Msa1237930:five_prime_UTR 40.0%
! TTTGAAACAAAACCCGGTCT+AGG + chr8_2:17623779-17623798 None:intergenic 40.0%
AAGACCAGCTGAACTGTAAC+AGG + chr8_2:17617495-17617514 None:intergenic 45.0%
AGGCAAACCAAACATGCAGA+AGG + chr8_2:17617640-17617659 None:intergenic 45.0%
TAGCAAAGAGGGATCGAACT+CGG + chr8_2:17617798-17617817 None:intergenic 45.0%
CTTACCTTCTTGCCGATCTT+TGG - chr8_2:17617825-17617844 Msa1237930:intron 45.0%
TATGCAGGCACTAACAAGAG+TGG + chr8_2:17617990-17618009 None:intergenic 45.0%
!! TCATGTTGGTTTCCAGAACC+AGG + chr8_2:17618240-17618259 None:intergenic 45.0%
TATTCAGCGGACGAATACCA+GGG + chr8_2:17618275-17618294 None:intergenic 45.0%
!! CAATCAAGTATTGGTGGTGG+TGG - chr8_2:17618309-17618328 Msa1237930:intron 45.0%
!! ATTGGTGGTGGTGGTACTAT+TGG - chr8_2:17618318-17618337 Msa1237930:intron 45.0%
!! CCGATGGATTCTTCTGGAAT+TGG - chr8_2:17618351-17618370 Msa1237930:intron 45.0%
ATCAATGTAGGTGCTCCTTC+TGG - chr8_2:17618384-17618403 Msa1237930:intron 45.0%
TCAATGTAGGTGCTCCTTCT+GGG - chr8_2:17618385-17618404 Msa1237930:intron 45.0%
CGTGGAAGGCCTAGAAAATA+TGG - chr8_2:17618444-17618463 Msa1237930:intron 45.0%
! CCATCTGCCCCATATTTTCT+AGG + chr8_2:17618456-17618475 None:intergenic 45.0%
CCTAGAAAATATGGGGCAGA+TGG - chr8_2:17618453-17618472 Msa1237930:intron 45.0%
GTCCGGGAAAAAACAACAGT+TGG - chr8_2:17618569-17618588 Msa1237930:CDS 45.0%
! CGTTTTCTTCCTCCGTTACT+TGG - chr8_2:17619171-17619190 Msa1237930:intron 45.0%
TAAGTGAAATTGGCCAGTCC+AGG - chr8_2:17619549-17619568 Msa1237930:intron 45.0%
AATAGGTCAAGAGGCCTCTT+CGG + chr8_2:17619886-17619905 None:intergenic 45.0%
ACCTATTCGCACCCCTAATT+TGG - chr8_2:17619899-17619918 Msa1237930:intron 45.0%
! TCCAAATTAGGGGTGCGAAT+AGG + chr8_2:17619903-17619922 None:intergenic 45.0%
CATGCCTGCATCCAAATTAG+GGG + chr8_2:17619913-17619932 None:intergenic 45.0%
!!! TTTTTGGGATTGGGGGGAAA+TGG - chr8_2:17620048-17620067 Msa1237930:intron 45.0%
!!! TTTTGGGATTGGGGGGAAAT+GGG - chr8_2:17620049-17620068 Msa1237930:intron 45.0%
! GAAATGGGCTTTGCTAAGCT+AGG - chr8_2:17620064-17620083 Msa1237930:intron 45.0%
! GAGGTGGCCTTTTTATAGTG+AGG - chr8_2:17620147-17620166 Msa1237930:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr8_2:17620182-17620201 Msa1237930:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr8_2:17620184-17620203 Msa1237930:intron 45.0%
GGATTTGTGTGTTTGGATGG+AGG + chr8_2:17620393-17620412 None:intergenic 45.0%
ACGTTCTTGAGAAACGTGAC+CGG - chr8_2:17620776-17620795 Msa1237930:intron 45.0%
TATGCGGCAAGTAGCAAAGA+TGG - chr8_2:17620855-17620874 Msa1237930:intron 45.0%
! GGTTTGATCTCTAGTTCAGC+TGG - chr8_2:17621028-17621047 Msa1237930:intron 45.0%
CATAGAAAAGGGGTCCAGAT+AGG + chr8_2:17621368-17621387 None:intergenic 45.0%
TTTGTCAGGCTTCGACATCT+GGG - chr8_2:17621932-17621951 Msa1237930:intron 45.0%
TTCGAGATACTAAGCCTGAC+AGG - chr8_2:17622364-17622383 Msa1237930:exon 45.0%
GGCCAAGAATTGAGAGATGT+TGG + chr8_2:17623246-17623265 None:intergenic 45.0%
CTTCGACAATATGGTGACTC+GGG - chr8_2:17623619-17623638 Msa1237930:five_prime_UTR 45.0%
AATCCAGGGAAAACCTAGAC+CGG - chr8_2:17623763-17623782 Msa1237930:five_prime_UTR 45.0%
TGGACCTGTTACAGTTCAGC+TGG - chr8_2:17617488-17617507 Msa1237930:intron 50.0%
GAAGTAAGGTCGGATCGATG+AGG - chr8_2:17617767-17617786 Msa1237930:intron 50.0%
AGCAAAGAGGGATCGAACTC+GGG + chr8_2:17617797-17617816 None:intergenic 50.0%
GACCAAATGGCGGCATTATC+CGG - chr8_2:17618183-17618202 Msa1237930:intron 50.0%
AACCGGATAATGCCGCCATT+TGG + chr8_2:17618188-17618207 None:intergenic 50.0%
CAGAGAGGATTACCTGGTTC+TGG - chr8_2:17618225-17618244 Msa1237930:intron 50.0%
ATTCAGCGGACGAATACCAG+GGG + chr8_2:17618274-17618293 None:intergenic 50.0%
GTATTCAGCGGACGAATACC+AGG + chr8_2:17618276-17618295 None:intergenic 50.0%
TATTGGATCCACGATGCCGA+TGG - chr8_2:17618335-17618354 Msa1237930:intron 50.0%
AGAAGAATCCATCGGCATCG+TGG + chr8_2:17618346-17618365 None:intergenic 50.0%
! ACGATGCCGATGGATTCTTC+TGG - chr8_2:17618345-17618364 Msa1237930:intron 50.0%
CAATGTAGGTGCTCCTTCTG+GGG - chr8_2:17618386-17618405 Msa1237930:intron 50.0%
AATGTAGGTGCTCCTTCTGG+GGG - chr8_2:17618387-17618406 Msa1237930:intron 50.0%
! CTTCCTTTTGGCAGGTTCAC+CGG + chr8_2:17618424-17618443 None:intergenic 50.0%
!!! TGTTGTTTTTTCCCGGACCC+TGG + chr8_2:17618567-17618586 None:intergenic 50.0%
!! AGATGGGCTGTGCACAAAAG+TGG - chr8_2:17618861-17618880 Msa1237930:intron 50.0%
TAATAAGGCCTAGCCTGGAC+TGG + chr8_2:17619565-17619584 None:intergenic 50.0%
ATAGGTCAAGAGGCCTCTTC+GGG + chr8_2:17619885-17619904 None:intergenic 50.0%
!! TGAGGCCTTTAGGGTGTGTT+TGG - chr8_2:17620165-17620184 Msa1237930:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG - chr8_2:17620188-17620207 Msa1237930:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG - chr8_2:17620189-17620208 Msa1237930:intron 50.0%
TTTGGATGGAGGGGAATGGA+GGG + chr8_2:17620382-17620401 None:intergenic 50.0%
TGTGTTTGGATGGAGGGGAA+TGG + chr8_2:17620386-17620405 None:intergenic 50.0%
AGGCCTGTCATCCCATTAAG+AGG + chr8_2:17620425-17620444 None:intergenic 50.0%
CATGTACACATATCGGGCAC+TGG + chr8_2:17621421-17621440 None:intergenic 50.0%
CAGTGCCCGATATGTGTACA+TGG - chr8_2:17621419-17621438 Msa1237930:intron 50.0%
CACAGTAGAGACAGCACCAT+TGG + chr8_2:17621908-17621927 None:intergenic 50.0%
CTCTACTGTGACGCTTTGTC+AGG - chr8_2:17621918-17621937 Msa1237930:intron 50.0%
CTTTGTCAGGCTTCGACATC+TGG - chr8_2:17621931-17621950 Msa1237930:intron 50.0%
TTGTCAGGCTTCGACATCTG+GGG - chr8_2:17621933-17621952 Msa1237930:intron 50.0%
TGGGGGTTCTGTCACATATG+AGG - chr8_2:17621951-17621970 Msa1237930:CDS 50.0%
AAGCCTGACAGGCTCTTACT+TGG - chr8_2:17622375-17622394 Msa1237930:five_prime_UTR 50.0%
CAACCAAGTAAGAGCCTGTC+AGG + chr8_2:17622381-17622400 None:intergenic 50.0%
GTTTCTCTTGCCAGTCCTGA+TGG - chr8_2:17622442-17622461 Msa1237930:intron 50.0%
AATGACACGACCATCAGGAC+TGG + chr8_2:17622455-17622474 None:intergenic 50.0%
AGTCCTGATGGTCGTGTCAT+TGG - chr8_2:17622454-17622473 Msa1237930:intron 50.0%
CATTGCTGCAAGTCCTGTTC+AGG - chr8_2:17622498-17622517 Msa1237930:intron 50.0%
! ATTGGGAGCTTTATGTGGGG+TGG - chr8_2:17623093-17623112 Msa1237930:intron 50.0%
ATATCCAATGGACGCGATGC+AGG + chr8_2:17623267-17623286 None:intergenic 50.0%
GGGGCTGATCTTCGACAATA+TGG - chr8_2:17623610-17623629 Msa1237930:five_prime_UTR 50.0%
! TGACTCGGGCTTGAAGTTCT+GGG - chr8_2:17623633-17623652 Msa1237930:five_prime_UTR 50.0%
ATCCAGGGAAAACCTAGACC+GGG - chr8_2:17623764-17623783 Msa1237930:five_prime_UTR 50.0%
! TGGTGGTGTGAGTGTGAGAG+TGG - chr8_2:17617468-17617487 Msa1237930:intron 55.0%
CATGGATCGAGGGGACCAAA+TGG - chr8_2:17618170-17618189 Msa1237930:intron 55.0%
CAACCGGTGAACCTGCCAAA+AGG - chr8_2:17618418-17618437 Msa1237930:intron 55.0%
GAACCTGCCAAAAGGAAGCG+TGG - chr8_2:17618426-17618445 Msa1237930:intron 55.0%
! CTTCCACGCTTCCTTTTGGC+AGG + chr8_2:17618432-17618451 None:intergenic 55.0%
! CTGCCAAAAGGAAGCGTGGA+AGG - chr8_2:17618430-17618449 Msa1237930:intron 55.0%
! AGGCCTTCCACGCTTCCTTT+TGG + chr8_2:17618436-17618455 None:intergenic 55.0%
!! GGATGGCTTGCTGGTGTTGT+TGG + chr8_2:17618501-17618520 None:intergenic 55.0%
ACAACACCAGCAAGCCATCC+TGG - chr8_2:17618501-17618520 Msa1237930:intron 55.0%
! GCGTTTCTGGACTTGCGGTA+CGG + chr8_2:17618529-17618548 None:intergenic 55.0%
GTACCGCAAGTCCAGAAACG+CGG - chr8_2:17618528-17618547 Msa1237930:intron 55.0%
AAGTCCAGAAACGCGGTCGA+GGG - chr8_2:17618535-17618554 Msa1237930:intron 55.0%
!!! GTTTTTTCCCGGACCCTGGA+GGG + chr8_2:17618563-17618582 None:intergenic 55.0%
!!! TGTTTTTTCCCGGACCCTGG+AGG + chr8_2:17618564-17618583 None:intergenic 55.0%
GAAATTGGCCAGTCCAGGCT+AGG - chr8_2:17619554-17619573 Msa1237930:intron 55.0%
AGAGGCCTCTTCGGGCTTAT+AGG + chr8_2:17619877-17619896 None:intergenic 55.0%
! AGGGGTGCGAATAGGTCAAG+AGG + chr8_2:17619895-17619914 None:intergenic 55.0%
CGCACCCCTAATTTGGATGC+AGG - chr8_2:17619906-17619925 Msa1237930:intron 55.0%
TTGGATGGAGGGGAATGGAG+GGG + chr8_2:17620381-17620400 None:intergenic 55.0%
GTTTGGATGGAGGGGAATGG+AGG + chr8_2:17620383-17620402 None:intergenic 55.0%
TGTCAGGCTTCGACATCTGG+GGG - chr8_2:17621934-17621953 Msa1237930:intron 55.0%
CGATGGCTCGCGTAATCGAA+CGG - chr8_2:17622408-17622427 Msa1237930:five_prime_UTR 55.0%
GATGGCTCGCGTAATCGAAC+GGG - chr8_2:17622409-17622428 Msa1237930:five_prime_UTR 55.0%
CCACCAATGACACGACCATC+AGG + chr8_2:17622460-17622479 None:intergenic 55.0%
! CCTGATGGTCGTGTCATTGG+TGG - chr8_2:17622457-17622476 Msa1237930:intron 55.0%
! GATGGTCGTGTCATTGGTGG+AGG - chr8_2:17622460-17622479 Msa1237930:intron 55.0%
! CGTGTCATTGGTGGAGGTGT+CGG - chr8_2:17622466-17622485 Msa1237930:intron 55.0%
! TTTTGTGGCAAGGCGACTCG+TGG - chr8_2:17623550-17623569 Msa1237930:five_prime_UTR 55.0%
! GTGACTCGGGCTTGAAGTTC+TGG - chr8_2:17623632-17623651 Msa1237930:five_prime_UTR 55.0%
! AACCCGGTCTAGGTTTTCCC+TGG + chr8_2:17623769-17623788 None:intergenic 55.0%
GGATCGAGGGGACCAAATGG+CGG - chr8_2:17618173-17618192 Msa1237930:intron 60.0%
GTTGAAGCAGCACCCCCAGA+AGG + chr8_2:17618402-17618421 None:intergenic 60.0%
!! TCTGGGGGTGCTGCTTCAAC+CGG - chr8_2:17618402-17618421 Msa1237930:intron 60.0%
! ACGGTTCCAGGATGGCTTGC+TGG + chr8_2:17618510-17618529 None:intergenic 60.0%
CTTGCGGTACGGTTCCAGGA+TGG + chr8_2:17618518-17618537 None:intergenic 60.0%
TGGACTTGCGGTACGGTTCC+AGG + chr8_2:17618522-17618541 None:intergenic 60.0%
! CGACCGCGTTTCTGGACTTG+CGG + chr8_2:17618534-17618553 None:intergenic 60.0%
CAAGTCCAGAAACGCGGTCG+AGG - chr8_2:17618534-17618553 Msa1237930:intron 60.0%
! GGCTGGCCCAAACCTAACCT+AGG + chr8_2:17619856-17619875 None:intergenic 60.0%
GCCAGCCTATAAGCCCGAAG+AGG - chr8_2:17619869-17619888 Msa1237930:intron 60.0%
GCCTCTTCGGGCTTATAGGC+TGG + chr8_2:17619873-17619892 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG - chr8_2:17620192-17620211 Msa1237930:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - chr8_2:17620193-17620212 Msa1237930:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr8_2:17620194-17620213 Msa1237930:intron 60.0%
ATGGAGGGGAATGGAGGGGA+GGG + chr8_2:17620377-17620396 None:intergenic 60.0%
!! GTCATTGGTGGAGGTGTCGG+TGG - chr8_2:17622469-17622488 Msa1237930:intron 60.0%
TTGGCCTGCATCGCGTCCAT+TGG - chr8_2:17623260-17623279 Msa1237930:intron 60.0%
!! CGGGCTTGAAGTTCTGGGAG+AGG - chr8_2:17623638-17623657 Msa1237930:five_prime_UTR 60.0%
TAGGAGGGGAAGGGAGGGGA+AGG - chr8_2:17620198-17620217 Msa1237930:intron 65.0%
GATGGAGGGGAATGGAGGGG+AGG + chr8_2:17620378-17620397 None:intergenic 65.0%
GGCGCCCTCGACCGCGTTTC+TGG + chr8_2:17618542-17618561 None:intergenic 75.0%
!!! GCGGTCGAGGGCGCCCTCCA+GGG - chr8_2:17618547-17618566 Msa1237930:intron 80.0%
!!! CGAGGGCGCCCTCCAGGGTC+CGG - chr8_2:17618552-17618571 Msa1237930:intron 80.0%
!!! GAGGGCGCCCTCCAGGGTCC+GGG - chr8_2:17618553-17618572 Msa1237930:intron 80.0%
!!! CGCGGTCGAGGGCGCCCTCC+AGG - chr8_2:17618546-17618565 Msa1237930:intron 85.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 17616719 17623822 17616719 ID=Msa1237930;Name=Msa1237930
chr8_2 mRNA 17616719 17623822 17616719 ID=Msa1237930-mRNA-1;Parent=Msa1237930;Name=Msa1237930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=527|1|1|1|0.8|0.66|6|496|343
chr8_2 exon 17616719 17617454 17616719 ID=Msa1237930-mRNA-1:exon:6729;Parent=Msa1237930-mRNA-1
chr8_2 exon 17618022 17618183 17618022 ID=Msa1237930-mRNA-1:exon:6728;Parent=Msa1237930-mRNA-1
chr8_2 exon 17618569 17618700 17618569 ID=Msa1237930-mRNA-1:exon:6727;Parent=Msa1237930-mRNA-1
chr8_2 exon 17619448 17619515 17619448 ID=Msa1237930-mRNA-1:exon:6726;Parent=Msa1237930-mRNA-1
chr8_2 exon 17621941 17622459 17621941 ID=Msa1237930-mRNA-1:exon:6725;Parent=Msa1237930-mRNA-1
chr8_2 exon 17623385 17623822 17623385 ID=Msa1237930-mRNA-1:exon:6724;Parent=Msa1237930-mRNA-1
chr8_2 five_prime_UTR 17623385 17623822 17623385 ID=Msa1237930-mRNA-1:five_prime_utr;Parent=Msa1237930-mRNA-1
chr8_2 five_prime_UTR 17622371 17622459 17622371 ID=Msa1237930-mRNA-1:five_prime_utr;Parent=Msa1237930-mRNA-1
chr8_2 CDS 17621941 17622370 17621941 ID=Msa1237930-mRNA-1:cds;Parent=Msa1237930-mRNA-1
chr8_2 CDS 17619448 17619515 17619448 ID=Msa1237930-mRNA-1:cds;Parent=Msa1237930-mRNA-1
chr8_2 CDS 17618569 17618700 17618569 ID=Msa1237930-mRNA-1:cds;Parent=Msa1237930-mRNA-1
chr8_2 CDS 17618022 17618183 17618022 ID=Msa1237930-mRNA-1:cds;Parent=Msa1237930-mRNA-1
chr8_2 CDS 17617215 17617454 17617215 ID=Msa1237930-mRNA-1:cds;Parent=Msa1237930-mRNA-1
chr8_2 three_prime_UTR 17616719 17617214 17616719 ID=Msa1237930-mRNA-1:three_prime_utr;Parent=Msa1237930-mRNA-1
Gene Sequence

>Msa1237930

ATGGATCGAGGGGACCAAATGGCGGCATTATCCGGTTCTGCATCATACTTTATGCAGAGAGGATTACCTGGTTCTGGAAACCAACATGAATTGCATAATTCCCCTGGTATTCGTCCGCTGAATACCAATTCATCGTTTCAATCAAGTATTGGTGGTGGTGGTACTATTGGATCCACGATGCCGATGGATTCTTCTGGAATTGGATCTCAATGTATCAATGTAGGTGCTCCTTCTGGGGGTGCTGCTTCAACCGGTGAACCTGCCAAAAGGAAGCGTGGAAGGCCTAGAAAATATGGGGCAGATGGAAGTGTGTCGTTAGCATTGACTCCAACAACACCAGCAAGCCATCCTGGAACCGTACCGCAAGTCCAGAAACGCGGTCGAGGGCGCCCTCCAGGGTCCGGGAAAAAACAACAGTTGGCTTCTTTCGGTGGTTTGATCTCTAGTTCAGCTGGAAATGGTTTCACTCCTCATGTCATCTCCATTGCAATTGGAGAAGACATTGCAACAAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAACTATATTTGTTATGTCGGCCAATGGTGCTGTCTCTACTGTGACGCTTTGTCAGGCTTCGACATCTGGGGGTTCTGTCACATATGAGGGGCGTTTCGAGATACTAAGCCTGACAGGCTCTTACTTGGTTGCTGATAACGATGGCTCGCGTAATCGAACGGGTTCATTAAGTGTTTCTCTTGCCAGTCCTGATGGTCGTGTCATTGGTGGAGGTGTCGGTGGATTGCTCATTGCTGCAAGTCCTGTTCAGGTGATAATTGGGAGCTTTATGTGGGGTGGACCAAAAACCAAGAACAAGAAGAATGAAGATTCAGAAGATCAAGAAGTTGGTGTAGAGGAAAATCATCATCATGGAGTTCACAACCCAGTTGCAATGAGTAGCATTTCACCAAATCAAAGTCTGACTCCAACATCTCTCAATTCTTGGCCTGCATCGCGTCCATTGGATATGCGTAATTCCCATATGGACATTGATTTAATGCGTGGGTGA
Protein sequence

>Msa1237930

MDRGDQMAALSGSASYFMQRGLPGSGNQHELHNSPGIRPLNTNSSFQSSIGGGGTIGSTMPMDSSGIGSQCINVGAPSGGAASTGEPAKRKRGRPRKYGADGSVSLALTPTTPASHPGTVPQVQKRGRGRPPGSGKKQQLASFGGLISSSAGNGFTPHVISIAIGEDIATKILAFSQQGPRTIFVMSANGAVSTVTLCQASTSGGSVTYEGRFEILSLTGSYLVADNDGSRNRTGSLSVSLASPDGRVIGGGVGGLLIAASPVQVIIGSFMWGGPKTKNKKNEDSEDQEVGVEENHHHGVHNPVAMSSISPNQSLTPTSLNSWPASRPLDMRNSHMDIDLMRG*