AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157730 MtrunA17_Chr7g0252111 96.528 144 5 0 1 144 1 144 1.60e-102 289
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157730 AT3G26740.1 48.611 144 65 4 1 141 1 138 1.96e-33 115

Find 72 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTCTTTGGTGTTGTTAA+AGG 0.238854 7_4:+46794847 None:intergenic
AGGACACCTGTCACTATAAA+TGG 0.256270 7_4:+46794989 None:intergenic
GGATGAGATATTTAGTATTC+AGG 0.268048 7_4:+46795010 None:intergenic
GGTGTATCATTCCTTGCTTC+AGG 0.283991 7_4:+46794122 None:intergenic
CAAGCCTCCGCGCCTATATA+AGG 0.289842 7_4:+46793445 None:intergenic
TCAGGCTGCAGCTTGACTTC+AGG 0.292025 7_4:+46794140 None:intergenic
TGAGTTGAATTAATCTTCTA+AGG 0.303123 7_4:+46794936 None:intergenic
ATTAATCTTCTAAGGAAGTT+TGG 0.317438 7_4:+46794944 None:intergenic
AGAACGTGAGGCAATCAATT+TGG 0.330098 7_4:+46794792 None:intergenic
ATCTATCTCCCAAGACAAAA+AGG 0.330799 7_4:-46795042 Msa1157730:five_prime_UTR
TTCCCTGAAGCTGCAGTCTT+TGG 0.331736 7_4:+46794101 None:intergenic
ACACCAAAGACTGCAGCTTC+AGG 0.337411 7_4:-46794104 Msa1157730:CDS
TTGGTTTCAATTTATAGAAT+AGG 0.339929 7_4:+46794963 None:intergenic
GGTTGGAGGGGATGCTTGTT+TGG 0.357304 7_4:-46794174 Msa1157730:CDS
ATAGCGAAATCTTACGTCTT+AGG 0.366730 7_4:+46794047 None:intergenic
TCAATTTATAGAATAGGAAT+AGG 0.376737 7_4:+46794969 None:intergenic
GATATTTAGTATTCAGGATA+AGG 0.381043 7_4:+46795016 None:intergenic
TTCTCATGGTGCGGCCGAGC+TGG 0.391083 7_4:-46793601 Msa1157730:three_prime_UTR
ATATTAAGAAGGGAATATAA+TGG 0.392582 7_4:-46793678 Msa1157730:three_prime_UTR
CTGCGAGCCTGATTATCAAA+AGG 0.412863 7_4:-46793887 Msa1157730:CDS
GAAGATTAATTCAACTCAAA+AGG 0.416071 7_4:-46794931 Msa1157730:five_prime_UTR
ATGAGAAATCACCCTTATAT+AGG 0.426876 7_4:-46793457 Msa1157730:three_prime_UTR
TATTAAGAAGGGAATATAAT+GGG 0.431529 7_4:-46793677 Msa1157730:three_prime_UTR
GAAAGATGTGAGACACTCTT+TGG 0.433626 7_4:+46794835 None:intergenic
CAAAGAAACTTATATTAAGA+AGG 0.445828 7_4:-46793689 Msa1157730:three_prime_UTR
ACCGTTTCACATGCCTCAGC+TGG 0.450987 7_4:+46794194 None:intergenic
TGGAGTGCTAACGCACTTGT+AGG 0.459639 7_4:+46793552 None:intergenic
GCAGAGGCTTGTGATGATCT+TGG 0.462484 7_4:-46793919 Msa1157730:CDS
AAGCCTCCGCGCCTATATAA+GGG 0.468079 7_4:+46793446 None:intergenic
CACCAAAGACTGCAGCTTCA+GGG 0.489453 7_4:-46794103 Msa1157730:CDS
TCTTGGGAGATAGATTGTCC+TGG 0.500035 7_4:+46795050 None:intergenic
TCTCATCCATTTATAGTGAC+AGG 0.500509 7_4:-46794995 Msa1157730:five_prime_UTR
TGCGAGCCTGATTATCAAAA+GGG 0.500804 7_4:-46793886 Msa1157730:CDS
GATCATCACAAGCCTCTGCT+TGG 0.508891 7_4:+46793923 None:intergenic
TCACATTCTGACTTGAGCGT+TGG 0.521901 7_4:+46793532 None:intergenic
TGTTGAAGGATCAGAGTTGT+CGG 0.523519 7_4:+46794735 None:intergenic
TGTTAAAGGCACAAAGGTAG+TGG 0.526517 7_4:+46794861 None:intergenic
CAATAGCCAAGGCAATAAGA+AGG 0.530752 7_4:+46793839 None:intergenic
CAGCTTCAGGGAACATTGAG+AGG 0.539207 7_4:-46794091 Msa1157730:CDS
CGTGAGGCAATCAATTTGGT+AGG 0.539328 7_4:+46794796 None:intergenic
GAATTGTAATCAACTGTTGA+AGG 0.548144 7_4:+46794721 None:intergenic
TCCAGCTGAGGCATGTGAAA+CGG 0.549406 7_4:-46794195 Msa1157730:CDS
CGAGCTGGTGATTCCACGGT+GGG 0.552818 7_4:-46793586 Msa1157730:three_prime_UTR
AAAGAAACTTATATTAAGAA+GGG 0.557838 7_4:-46793688 Msa1157730:three_prime_UTR
AGGCATGTGAAACGGTTGGA+GGG 0.565003 7_4:-46794187 Msa1157730:CDS
AAAAGCACAGGCAATACAGA+TGG 0.572223 7_4:-46793625 Msa1157730:three_prime_UTR
GCTGAGGCATGTGAAACGGT+TGG 0.574341 7_4:-46794191 Msa1157730:CDS
CGGCCGAGCTGGTGATTCCA+CGG 0.575516 7_4:-46793590 Msa1157730:three_prime_UTR
TGTCAGAGTGTTTCCAGCTG+AGG 0.580476 7_4:-46794207 Msa1157730:intron
CACAAAGGTAGTGGTTGCAA+AGG 0.582454 7_4:+46794870 None:intergenic
GAGGCATGTGAAACGGTTGG+AGG 0.591598 7_4:-46794188 Msa1157730:CDS
TCAAGCTGCAGCCTGAAGCA+AGG 0.602199 7_4:-46794133 Msa1157730:CDS
GAGGCTTGTGATGATCTTGG+AGG 0.607345 7_4:-46793916 Msa1157730:CDS
GGCATGTGAAACGGTTGGAG+GGG 0.610004 7_4:-46794186 Msa1157730:CDS
GTTGTAAGCTTCAATAGCCA+AGG 0.612595 7_4:+46793828 None:intergenic
AATTATAAGAACAAAAGCAC+AGG 0.624477 7_4:-46793637 Msa1157730:three_prime_UTR
ACAGATGGATTCTCATGGTG+CGG 0.627027 7_4:-46793610 Msa1157730:three_prime_UTR
GAAAGTGAATCGTACCTCGA+GGG 0.634551 7_4:-46793482 Msa1157730:three_prime_UTR
GTGAGGCAATCAATTTGGTA+GGG 0.637953 7_4:+46794797 None:intergenic
GCAATACAGATGGATTCTCA+TGG 0.647002 7_4:-46793615 Msa1157730:three_prime_UTR
TGGTGTTGTTAAAGGCACAA+AGG 0.647032 7_4:+46794855 None:intergenic
AGCTTCAGGGAACATTGAGA+GGG 0.650830 7_4:-46794090 Msa1157730:CDS
CCACCGTGGAATCACCAGCT+CGG 0.654741 7_4:+46793587 None:intergenic
AAATCACCCTTATATAGGCG+CGG 0.658584 7_4:-46793452 Msa1157730:three_prime_UTR
GCGAGGTGAAGAAGAACGTG+AGG 0.676435 7_4:+46794780 None:intergenic
TGAAAGTGAATCGTACCTCG+AGG 0.680621 7_4:-46793483 Msa1157730:three_prime_UTR
ACGTGGTTAAGCATAATGCA+AGG 0.686256 7_4:-46793506 Msa1157730:three_prime_UTR
ACTTTGATTGCAGTGTAGCG+AGG 0.698323 7_4:+46794763 None:intergenic
CCGAGCTGGTGATTCCACGG+TGG 0.699711 7_4:-46793587 Msa1157730:three_prime_UTR
GTGATTTCTCATCACCCTCG+AGG 0.702861 7_4:+46793468 None:intergenic
TCACCCTTATATAGGCGCGG+AGG 0.714858 7_4:-46793449 Msa1157730:three_prime_UTR
AAGTCAGAATGTGAATGACG+TGG 0.725692 7_4:-46793523 Msa1157730:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATATTTATAACCTT+AGG - chr7_4:46793879-46793898 Msa1157730:CDS 10.0%
!! TATATTATATTTATAACCTT+AGG - chr7_4:46793879-46793898 Msa1157730:CDS 10.0%
!! AACTAAACTAAAATGAATTA+AGG + chr7_4:46793817-46793836 None:intergenic 15.0%
!!! AATTCATTTTAGTTTAGTTT+AGG - chr7_4:46793818-46793837 Msa1157730:three_prime_UTR 15.0%
!!! TAGTATATTATTAGTTTCTA+TGG - chr7_4:46793949-46793968 Msa1157730:intron 15.0%
!! AAAGAAACTTATATTAAGAA+GGG - chr7_4:46794794-46794813 Msa1157730:CDS 15.0%
!! AACTAAACTAAAATGAATTA+AGG + chr7_4:46793817-46793836 None:intergenic 15.0%
!!! AATTCATTTTAGTTTAGTTT+AGG - chr7_4:46793818-46793837 Msa1157730:three_prime_UTR 15.0%
!!! TAGTATATTATTAGTTTCTA+TGG - chr7_4:46793949-46793968 Msa1157730:intron 15.0%
!! AAAGAAACTTATATTAAGAA+GGG - chr7_4:46794794-46794813 Msa1157730:CDS 15.0%
!! TCAATTTATAGAATAGGAAT+AGG + chr7_4:46793516-46793535 None:intergenic 20.0%
!! TTGGTTTCAATTTATAGAAT+AGG + chr7_4:46793522-46793541 None:intergenic 20.0%
!!! TATTATTAGTTTCTATGGTA+TGG - chr7_4:46793954-46793973 Msa1157730:intron 20.0%
!!! ATCTCTATAAGTTATTCTTT+TGG - chr7_4:46794168-46794187 Msa1157730:CDS 20.0%
!! AATAACACAAACAAATGTTA+TGG + chr7_4:46794249-46794268 None:intergenic 20.0%
!! CAAAGAAACTTATATTAAGA+AGG - chr7_4:46794793-46794812 Msa1157730:CDS 20.0%
!! ATATTAAGAAGGGAATATAA+TGG - chr7_4:46794804-46794823 Msa1157730:CDS 20.0%
!! TATTAAGAAGGGAATATAAT+GGG - chr7_4:46794805-46794824 Msa1157730:CDS 20.0%
!! TCAATTTATAGAATAGGAAT+AGG + chr7_4:46793516-46793535 None:intergenic 20.0%
!! TTGGTTTCAATTTATAGAAT+AGG + chr7_4:46793522-46793541 None:intergenic 20.0%
!!! TATTATTAGTTTCTATGGTA+TGG - chr7_4:46793954-46793973 Msa1157730:intron 20.0%
!!! ATCTCTATAAGTTATTCTTT+TGG - chr7_4:46794168-46794187 Msa1157730:CDS 20.0%
!! AATAACACAAACAAATGTTA+TGG + chr7_4:46794249-46794268 None:intergenic 20.0%
!! CAAAGAAACTTATATTAAGA+AGG - chr7_4:46794793-46794812 Msa1157730:CDS 20.0%
!! ATATTAAGAAGGGAATATAA+TGG - chr7_4:46794804-46794823 Msa1157730:CDS 20.0%
!! TATTAAGAAGGGAATATAAT+GGG - chr7_4:46794805-46794824 Msa1157730:CDS 20.0%
! GATATTTAGTATTCAGGATA+AGG + chr7_4:46793469-46793488 None:intergenic 25.0%
!! ATTAATCTTCTAAGGAAGTT+TGG + chr7_4:46793541-46793560 None:intergenic 25.0%
!! TGAGTTGAATTAATCTTCTA+AGG + chr7_4:46793549-46793568 None:intergenic 25.0%
! GAAGATTAATTCAACTCAAA+AGG - chr7_4:46793551-46793570 Msa1157730:three_prime_UTR 25.0%
!!! AGTTTAGTTTAGGTTTTCTT+AGG - chr7_4:46793828-46793847 Msa1157730:three_prime_UTR 25.0%
!!! GACTTTTAGAATTTTGTTTC+AGG - chr7_4:46794190-46794209 Msa1157730:CDS 25.0%
!! TTTGTTTCAGGACTAAATTT+TGG - chr7_4:46794202-46794221 Msa1157730:CDS 25.0%
! ATCAGAATTGTGATGTTAAA+TGG - chr7_4:46794513-46794532 Msa1157730:intron 25.0%
!! GTGCTTTTGTTCTTATAATT+GGG + chr7_4:46794845-46794864 None:intergenic 25.0%
!! TGTGCTTTTGTTCTTATAAT+TGG + chr7_4:46794846-46794865 None:intergenic 25.0%
!! AATTATAAGAACAAAAGCAC+AGG - chr7_4:46794845-46794864 Msa1157730:CDS 25.0%
! GATATTTAGTATTCAGGATA+AGG + chr7_4:46793469-46793488 None:intergenic 25.0%
!! ATTAATCTTCTAAGGAAGTT+TGG + chr7_4:46793541-46793560 None:intergenic 25.0%
!! TGAGTTGAATTAATCTTCTA+AGG + chr7_4:46793549-46793568 None:intergenic 25.0%
! GAAGATTAATTCAACTCAAA+AGG - chr7_4:46793551-46793570 Msa1157730:three_prime_UTR 25.0%
!!! AGTTTAGTTTAGGTTTTCTT+AGG - chr7_4:46793828-46793847 Msa1157730:three_prime_UTR 25.0%
!!! GACTTTTAGAATTTTGTTTC+AGG - chr7_4:46794190-46794209 Msa1157730:CDS 25.0%
!! TTTGTTTCAGGACTAAATTT+TGG - chr7_4:46794202-46794221 Msa1157730:CDS 25.0%
! ATCAGAATTGTGATGTTAAA+TGG - chr7_4:46794513-46794532 Msa1157730:intron 25.0%
!! GTGCTTTTGTTCTTATAATT+GGG + chr7_4:46794845-46794864 None:intergenic 25.0%
!! TGTGCTTTTGTTCTTATAAT+TGG + chr7_4:46794846-46794865 None:intergenic 25.0%
!! AATTATAAGAACAAAAGCAC+AGG - chr7_4:46794845-46794864 Msa1157730:CDS 25.0%
GGATGAGATATTTAGTATTC+AGG + chr7_4:46793475-46793494 None:intergenic 30.0%
GAATTGTAATCAACTGTTGA+AGG + chr7_4:46793764-46793783 None:intergenic 30.0%
ATTAAGGTGATAGAGAATGA+AGG + chr7_4:46793801-46793820 None:intergenic 30.0%
AGATCGTGCTCATTATTTAT+AGG - chr7_4:46793908-46793927 Msa1157730:CDS 30.0%
GATTACCATTTGTCACAAAT+AGG + chr7_4:46794026-46794045 None:intergenic 30.0%
!!! AATGGATGATGTGTTTTTTC+AGG - chr7_4:46794531-46794550 Msa1157730:intron 30.0%
!!! ATGGATGATGTGTTTTTTCA+GGG - chr7_4:46794532-46794551 Msa1157730:intron 30.0%
ATGAGAAATCACCCTTATAT+AGG - chr7_4:46795025-46795044 Msa1157730:five_prime_UTR 30.0%
GGATGAGATATTTAGTATTC+AGG + chr7_4:46793475-46793494 None:intergenic 30.0%
GAATTGTAATCAACTGTTGA+AGG + chr7_4:46793764-46793783 None:intergenic 30.0%
ATTAAGGTGATAGAGAATGA+AGG + chr7_4:46793801-46793820 None:intergenic 30.0%
AGATCGTGCTCATTATTTAT+AGG - chr7_4:46793908-46793927 Msa1157730:CDS 30.0%
GATTACCATTTGTCACAAAT+AGG + chr7_4:46794026-46794045 None:intergenic 30.0%
!!! AATGGATGATGTGTTTTTTC+AGG - chr7_4:46794531-46794550 Msa1157730:intron 30.0%
!!! ATGGATGATGTGTTTTTTCA+GGG - chr7_4:46794532-46794551 Msa1157730:intron 30.0%
ATGAGAAATCACCCTTATAT+AGG - chr7_4:46795025-46795044 Msa1157730:five_prime_UTR 30.0%
ATCTATCTCCCAAGACAAAA+AGG - chr7_4:46793440-46793459 Msa1157730:three_prime_UTR 35.0%
! TAAGGTTGCCTTTTTGTCTT+GGG + chr7_4:46793451-46793470 None:intergenic 35.0%
! ATAAGGTTGCCTTTTTGTCT+TGG + chr7_4:46793452-46793471 None:intergenic 35.0%
TCTCATCCATTTATAGTGAC+AGG - chr7_4:46793487-46793506 Msa1157730:three_prime_UTR 35.0%
!! ACACTCTTTGGTGTTGTTAA+AGG + chr7_4:46793638-46793657 None:intergenic 35.0%
GCATACCTATTTGTGACAAA+TGG - chr7_4:46794018-46794037 Msa1157730:intron 35.0%
!! AATTTTGGAGAGTCACAACA+TGG - chr7_4:46794217-46794236 Msa1157730:intron 35.0%
ATAGCGAAATCTTACGTCTT+AGG + chr7_4:46794438-46794457 None:intergenic 35.0%
!! TAGACACCCTTTTGATAATC+AGG + chr7_4:46794605-46794624 None:intergenic 35.0%
GAAAAACCTTCTTATTGCCT+TGG - chr7_4:46794637-46794656 Msa1157730:intron 35.0%
ATCTATCTCCCAAGACAAAA+AGG - chr7_4:46793440-46793459 Msa1157730:three_prime_UTR 35.0%
! TAAGGTTGCCTTTTTGTCTT+GGG + chr7_4:46793451-46793470 None:intergenic 35.0%
! ATAAGGTTGCCTTTTTGTCT+TGG + chr7_4:46793452-46793471 None:intergenic 35.0%
TCTCATCCATTTATAGTGAC+AGG - chr7_4:46793487-46793506 Msa1157730:three_prime_UTR 35.0%
!! ACACTCTTTGGTGTTGTTAA+AGG + chr7_4:46793638-46793657 None:intergenic 35.0%
GCATACCTATTTGTGACAAA+TGG - chr7_4:46794018-46794037 Msa1157730:intron 35.0%
!! AATTTTGGAGAGTCACAACA+TGG - chr7_4:46794217-46794236 Msa1157730:intron 35.0%
ATAGCGAAATCTTACGTCTT+AGG + chr7_4:46794438-46794457 None:intergenic 35.0%
!! TAGACACCCTTTTGATAATC+AGG + chr7_4:46794605-46794624 None:intergenic 35.0%
GAAAAACCTTCTTATTGCCT+TGG - chr7_4:46794637-46794656 Msa1157730:intron 35.0%
AGGACACCTGTCACTATAAA+TGG + chr7_4:46793496-46793515 None:intergenic 40.0%
! GAGCTGTCTGCATTTTTGAA+GGG + chr7_4:46793589-46793608 None:intergenic 40.0%
! AGAGCTGTCTGCATTTTTGA+AGG + chr7_4:46793590-46793609 None:intergenic 40.0%
! TGTTAAAGGCACAAAGGTAG+TGG + chr7_4:46793624-46793643 None:intergenic 40.0%
!! TGGTGTTGTTAAAGGCACAA+AGG + chr7_4:46793630-46793649 None:intergenic 40.0%
GAAAGATGTGAGACACTCTT+TGG + chr7_4:46793650-46793669 None:intergenic 40.0%
GTGAGGCAATCAATTTGGTA+GGG + chr7_4:46793688-46793707 None:intergenic 40.0%
AGAACGTGAGGCAATCAATT+TGG + chr7_4:46793693-46793712 None:intergenic 40.0%
TGTTGAAGGATCAGAGTTGT+CGG + chr7_4:46793750-46793769 None:intergenic 40.0%
TGCGAGCCTGATTATCAAAA+GGG - chr7_4:46794596-46794615 Msa1157730:intron 40.0%
CAATAGCCAAGGCAATAAGA+AGG + chr7_4:46794646-46794665 None:intergenic 40.0%
GTTGTAAGCTTCAATAGCCA+AGG + chr7_4:46794657-46794676 None:intergenic 40.0%
! AAAAGCACAGGCAATACAGA+TGG - chr7_4:46794857-46794876 Msa1157730:CDS 40.0%
! GCAATACAGATGGATTCTCA+TGG - chr7_4:46794867-46794886 Msa1157730:CDS 40.0%
AAGTCAGAATGTGAATGACG+TGG - chr7_4:46794959-46794978 Msa1157730:five_prime_UTR 40.0%
ACGTGGTTAAGCATAATGCA+AGG - chr7_4:46794976-46794995 Msa1157730:five_prime_UTR 40.0%
AAATCACCCTTATATAGGCG+CGG - chr7_4:46795030-46795049 Msa1157730:five_prime_UTR 40.0%
AGGACACCTGTCACTATAAA+TGG + chr7_4:46793496-46793515 None:intergenic 40.0%
! GAGCTGTCTGCATTTTTGAA+GGG + chr7_4:46793589-46793608 None:intergenic 40.0%
! AGAGCTGTCTGCATTTTTGA+AGG + chr7_4:46793590-46793609 None:intergenic 40.0%
! TGTTAAAGGCACAAAGGTAG+TGG + chr7_4:46793624-46793643 None:intergenic 40.0%
!! TGGTGTTGTTAAAGGCACAA+AGG + chr7_4:46793630-46793649 None:intergenic 40.0%
GAAAGATGTGAGACACTCTT+TGG + chr7_4:46793650-46793669 None:intergenic 40.0%
GTGAGGCAATCAATTTGGTA+GGG + chr7_4:46793688-46793707 None:intergenic 40.0%
AGAACGTGAGGCAATCAATT+TGG + chr7_4:46793693-46793712 None:intergenic 40.0%
TGTTGAAGGATCAGAGTTGT+CGG + chr7_4:46793750-46793769 None:intergenic 40.0%
TGCGAGCCTGATTATCAAAA+GGG - chr7_4:46794596-46794615 Msa1157730:intron 40.0%
CAATAGCCAAGGCAATAAGA+AGG + chr7_4:46794646-46794665 None:intergenic 40.0%
GTTGTAAGCTTCAATAGCCA+AGG + chr7_4:46794657-46794676 None:intergenic 40.0%
! AAAAGCACAGGCAATACAGA+TGG - chr7_4:46794857-46794876 Msa1157730:CDS 40.0%
! GCAATACAGATGGATTCTCA+TGG - chr7_4:46794867-46794886 Msa1157730:CDS 40.0%
AAGTCAGAATGTGAATGACG+TGG - chr7_4:46794959-46794978 Msa1157730:five_prime_UTR 40.0%
ACGTGGTTAAGCATAATGCA+AGG - chr7_4:46794976-46794995 Msa1157730:five_prime_UTR 40.0%
AAATCACCCTTATATAGGCG+CGG - chr7_4:46795030-46795049 Msa1157730:five_prime_UTR 40.0%
! CACAAAGGTAGTGGTTGCAA+AGG + chr7_4:46793615-46793634 None:intergenic 45.0%
CGTGAGGCAATCAATTTGGT+AGG + chr7_4:46793689-46793708 None:intergenic 45.0%
ACTTTGATTGCAGTGTAGCG+AGG + chr7_4:46793722-46793741 None:intergenic 45.0%
AGCACGATCTGTACTTCCTA+AGG + chr7_4:46793898-46793917 None:intergenic 45.0%
GGTGTATCATTCCTTGCTTC+AGG + chr7_4:46794363-46794382 None:intergenic 45.0%
AGCTTCAGGGAACATTGAGA+GGG - chr7_4:46794392-46794411 Msa1157730:intron 45.0%
! TTTCAGGGTTTTCCAAGCAG+AGG - chr7_4:46794547-46794566 Msa1157730:intron 45.0%
CTGCGAGCCTGATTATCAAA+AGG - chr7_4:46794595-46794614 Msa1157730:intron 45.0%
! ACAGATGGATTCTCATGGTG+CGG - chr7_4:46794872-46794891 Msa1157730:CDS 45.0%
! TCACATTCTGACTTGAGCGT+TGG + chr7_4:46794953-46794972 None:intergenic 45.0%
TGAAAGTGAATCGTACCTCG+AGG - chr7_4:46794999-46795018 Msa1157730:five_prime_UTR 45.0%
GAAAGTGAATCGTACCTCGA+GGG - chr7_4:46795000-46795019 Msa1157730:five_prime_UTR 45.0%
! CACAAAGGTAGTGGTTGCAA+AGG + chr7_4:46793615-46793634 None:intergenic 45.0%
CGTGAGGCAATCAATTTGGT+AGG + chr7_4:46793689-46793708 None:intergenic 45.0%
ACTTTGATTGCAGTGTAGCG+AGG + chr7_4:46793722-46793741 None:intergenic 45.0%
AGCACGATCTGTACTTCCTA+AGG + chr7_4:46793898-46793917 None:intergenic 45.0%
GGTGTATCATTCCTTGCTTC+AGG + chr7_4:46794363-46794382 None:intergenic 45.0%
AGCTTCAGGGAACATTGAGA+GGG - chr7_4:46794392-46794411 Msa1157730:intron 45.0%
! TTTCAGGGTTTTCCAAGCAG+AGG - chr7_4:46794547-46794566 Msa1157730:intron 45.0%
CTGCGAGCCTGATTATCAAA+AGG - chr7_4:46794595-46794614 Msa1157730:intron 45.0%
! ACAGATGGATTCTCATGGTG+CGG - chr7_4:46794872-46794891 Msa1157730:CDS 45.0%
! TCACATTCTGACTTGAGCGT+TGG + chr7_4:46794953-46794972 None:intergenic 45.0%
TGAAAGTGAATCGTACCTCG+AGG - chr7_4:46794999-46795018 Msa1157730:five_prime_UTR 45.0%
GAAAGTGAATCGTACCTCGA+GGG - chr7_4:46795000-46795019 Msa1157730:five_prime_UTR 45.0%
! TGTCAGAGTGTTTCCAGCTG+AGG - chr7_4:46794275-46794294 Msa1157730:intron 50.0%
TCCAGCTGAGGCATGTGAAA+CGG - chr7_4:46794287-46794306 Msa1157730:intron 50.0%
AGGCATGTGAAACGGTTGGA+GGG - chr7_4:46794295-46794314 Msa1157730:intron 50.0%
ACACCAAAGACTGCAGCTTC+AGG - chr7_4:46794378-46794397 Msa1157730:intron 50.0%
CACCAAAGACTGCAGCTTCA+GGG - chr7_4:46794379-46794398 Msa1157730:intron 50.0%
TTCCCTGAAGCTGCAGTCTT+TGG + chr7_4:46794384-46794403 None:intergenic 50.0%
CAGCTTCAGGGAACATTGAG+AGG - chr7_4:46794391-46794410 Msa1157730:intron 50.0%
GATCATCACAAGCCTCTGCT+TGG + chr7_4:46794562-46794581 None:intergenic 50.0%
GCAGAGGCTTGTGATGATCT+TGG - chr7_4:46794563-46794582 Msa1157730:intron 50.0%
GAGGCTTGTGATGATCTTGG+AGG - chr7_4:46794566-46794585 Msa1157730:intron 50.0%
! TGGAGTGCTAACGCACTTGT+AGG + chr7_4:46794933-46794952 None:intergenic 50.0%
GTGATTTCTCATCACCCTCG+AGG + chr7_4:46795017-46795036 None:intergenic 50.0%
AAGCCTCCGCGCCTATATAA+GGG + chr7_4:46795039-46795058 None:intergenic 50.0%
! TGTCAGAGTGTTTCCAGCTG+AGG - chr7_4:46794275-46794294 Msa1157730:intron 50.0%
TCCAGCTGAGGCATGTGAAA+CGG - chr7_4:46794287-46794306 Msa1157730:intron 50.0%
AGGCATGTGAAACGGTTGGA+GGG - chr7_4:46794295-46794314 Msa1157730:intron 50.0%
ACACCAAAGACTGCAGCTTC+AGG - chr7_4:46794378-46794397 Msa1157730:intron 50.0%
CACCAAAGACTGCAGCTTCA+GGG - chr7_4:46794379-46794398 Msa1157730:intron 50.0%
TTCCCTGAAGCTGCAGTCTT+TGG + chr7_4:46794384-46794403 None:intergenic 50.0%
CAGCTTCAGGGAACATTGAG+AGG - chr7_4:46794391-46794410 Msa1157730:intron 50.0%
GATCATCACAAGCCTCTGCT+TGG + chr7_4:46794562-46794581 None:intergenic 50.0%
GCAGAGGCTTGTGATGATCT+TGG - chr7_4:46794563-46794582 Msa1157730:intron 50.0%
GAGGCTTGTGATGATCTTGG+AGG - chr7_4:46794566-46794585 Msa1157730:intron 50.0%
! TGGAGTGCTAACGCACTTGT+AGG + chr7_4:46794933-46794952 None:intergenic 50.0%
GTGATTTCTCATCACCCTCG+AGG + chr7_4:46795017-46795036 None:intergenic 50.0%
AAGCCTCCGCGCCTATATAA+GGG + chr7_4:46795039-46795058 None:intergenic 50.0%
GCGAGGTGAAGAAGAACGTG+AGG + chr7_4:46793705-46793724 None:intergenic 55.0%
ACCGTTTCACATGCCTCAGC+TGG + chr7_4:46794291-46794310 None:intergenic 55.0%
GCTGAGGCATGTGAAACGGT+TGG - chr7_4:46794291-46794310 Msa1157730:intron 55.0%
GAGGCATGTGAAACGGTTGG+AGG - chr7_4:46794294-46794313 Msa1157730:intron 55.0%
GGCATGTGAAACGGTTGGAG+GGG - chr7_4:46794296-46794315 Msa1157730:intron 55.0%
GGTTGGAGGGGATGCTTGTT+TGG - chr7_4:46794308-46794327 Msa1157730:intron 55.0%
TCAGGCTGCAGCTTGACTTC+AGG + chr7_4:46794345-46794364 None:intergenic 55.0%
TCAAGCTGCAGCCTGAAGCA+AGG - chr7_4:46794349-46794368 Msa1157730:intron 55.0%
! GGTACTTTTCACTCCCACCG+TGG + chr7_4:46794912-46794931 None:intergenic 55.0%
TCACCCTTATATAGGCGCGG+AGG - chr7_4:46795033-46795052 Msa1157730:five_prime_UTR 55.0%
CAAGCCTCCGCGCCTATATA+AGG + chr7_4:46795040-46795059 None:intergenic 55.0%
GCGGAGGCTTGTAACTACCT+CGG - chr7_4:46795049-46795068 Msa1157730:five_prime_UTR 55.0%
GCGAGGTGAAGAAGAACGTG+AGG + chr7_4:46793705-46793724 None:intergenic 55.0%
ACCGTTTCACATGCCTCAGC+TGG + chr7_4:46794291-46794310 None:intergenic 55.0%
GCTGAGGCATGTGAAACGGT+TGG - chr7_4:46794291-46794310 Msa1157730:intron 55.0%
GAGGCATGTGAAACGGTTGG+AGG - chr7_4:46794294-46794313 Msa1157730:intron 55.0%
GGCATGTGAAACGGTTGGAG+GGG - chr7_4:46794296-46794315 Msa1157730:intron 55.0%
GGTTGGAGGGGATGCTTGTT+TGG - chr7_4:46794308-46794327 Msa1157730:intron 55.0%
TCAGGCTGCAGCTTGACTTC+AGG + chr7_4:46794345-46794364 None:intergenic 55.0%
TCAAGCTGCAGCCTGAAGCA+AGG - chr7_4:46794349-46794368 Msa1157730:intron 55.0%
! GGTACTTTTCACTCCCACCG+TGG + chr7_4:46794912-46794931 None:intergenic 55.0%
TCACCCTTATATAGGCGCGG+AGG - chr7_4:46795033-46795052 Msa1157730:five_prime_UTR 55.0%
CAAGCCTCCGCGCCTATATA+AGG + chr7_4:46795040-46795059 None:intergenic 55.0%
CCACCGTGGAATCACCAGCT+CGG + chr7_4:46794898-46794917 None:intergenic 60.0%
CGAGCTGGTGATTCCACGGT+GGG - chr7_4:46794896-46794915 Msa1157730:exon 60.0%
CCACCGTGGAATCACCAGCT+CGG + chr7_4:46794898-46794917 None:intergenic 60.0%
CGAGCTGGTGATTCCACGGT+GGG - chr7_4:46794896-46794915 Msa1157730:exon 60.0%
TTCTCATGGTGCGGCCGAGC+TGG - chr7_4:46794881-46794900 Msa1157730:CDS 65.0%
CGGCCGAGCTGGTGATTCCA+CGG - chr7_4:46794892-46794911 Msa1157730:exon 65.0%
CCGAGCTGGTGATTCCACGG+TGG - chr7_4:46794895-46794914 Msa1157730:exon 65.0%
TTCTCATGGTGCGGCCGAGC+TGG - chr7_4:46794881-46794900 Msa1157730:CDS 65.0%
CGGCCGAGCTGGTGATTCCA+CGG - chr7_4:46794892-46794911 Msa1157730:exon 65.0%
CCGAGCTGGTGATTCCACGG+TGG - chr7_4:46794895-46794914 Msa1157730:exon 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46793435 46795069 46793435 ID=Msa1157730;Name=Msa1157730
chr7_4 mRNA 46793435 46795069 46793435 ID=Msa1157730-mRNA-1;Parent=Msa1157730;Name=Msa1157730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=161|1|1|1|1|1|3|441|144
chr7_4 exon 46793435 46793951 46793435 ID=Msa1157730-mRNA-1:exon:12368;Parent=Msa1157730-mRNA-1
chr7_4 exon 46794062 46794223 46794062 ID=Msa1157730-mRNA-1:exon:12367;Parent=Msa1157730-mRNA-1
chr7_4 exon 46794712 46795069 46794712 ID=Msa1157730-mRNA-1:exon:12366;Parent=Msa1157730-mRNA-1
chr7_4 five_prime_UTR 46794909 46795069 46794909 ID=Msa1157730-mRNA-1:five_prime_utr;Parent=Msa1157730-mRNA-1
chr7_4 CDS 46794712 46794908 46794712 ID=Msa1157730-mRNA-1:cds;Parent=Msa1157730-mRNA-1
chr7_4 CDS 46794062 46794223 46794062 ID=Msa1157730-mRNA-1:cds;Parent=Msa1157730-mRNA-1
chr7_4 CDS 46793876 46793951 46793876 ID=Msa1157730-mRNA-1:cds;Parent=Msa1157730-mRNA-1
chr7_4 three_prime_UTR 46793435 46793875 46793435 ID=Msa1157730-mRNA-1:three_prime_utr;Parent=Msa1157730-mRNA-1
Gene Sequence

>Msa1157730

ATGCAGACAGCTCTAACCTTTGCAACCACTACCTTTGTGCCTTTAACAACACCAAAGAGTGTCTCACATCTTTCTACTAATTTGAGTTTCCCTACCAAATTGATTGCCTCACGTTCTTCTTCACCTCGCTACACTGCAATCAAAGTTGCAACCGACAACTCTGATCCTTCAACAGTTGATTACAATTCTGTATTCTCAGTGTTTCCAGCTGAGGCATGTGAAACGGTTGGAGGGGATGCTTGTTTGGCAGACATGAATCCTGAAGTCAAGCTGCAGCCTGAAGCAAGGAATGATACACCAAAGACTGCAGCTTCAGGGAACATTGAGAGGGAGTATCTTGATTACAATGAGCCTAAGACGGTTTTCCAAGCAGAGGCTTGTGATGATCTTGGAGGAGCTTTCTGCGAGCCTGATTATCAAAAGGGTGTCTACTAG

Protein sequence

>Msa1157730

MQTALTFATTTFVPLTTPKSVSHLSTNLSFPTKLIASRSSSPRYTAIKVATDNSDPSTVDYNSVFSVFPAEACETVGGDACLADMNPEVKLQPEARNDTPKTAASGNIEREYLDYNEPKTVFQAEACDDLGGAFCEPDYQKGVY*