Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279910 | sp|Q9M2E2|SDR1_ARATH | 62.791 | 86 | 29 | 3 | 16 | 99 | 21 | 105 | 2.50e-27 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279910 | G7J258 | 90.426 | 94 | 9 | 0 | 16 | 109 | 22 | 115 | 3.67e-50 | 170 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa1279910 | 0.801245 | 9.862610e-49 | -8.615850e-47 |
| Msa0017510 | Msa1279910 | 0.808763 | 2.639719e-50 | -8.615850e-47 |
| Msa0105070 | Msa1279910 | 0.804510 | 2.086734e-49 | -8.615850e-47 |
| Msa0663240 | Msa1279910 | 0.801611 | 8.298576e-49 | -8.615850e-47 |
| Msa0688480 | Msa1279910 | 0.807229 | 5.598087e-50 | -8.615850e-47 |
| Msa0731940 | Msa1279910 | 0.829689 | 4.471809e-55 | -8.615850e-47 |
| Msa0760130 | Msa1279910 | 0.826791 | 2.234863e-54 | -8.615850e-47 |
| Msa0766630 | Msa1279910 | 0.810358 | 1.199120e-50 | -8.615850e-47 |
| Msa0810220 | Msa1279910 | 0.812046 | 5.162395e-51 | -8.615850e-47 |
| Msa0131770 | Msa1279910 | 0.801868 | 7.348729e-49 | -8.615850e-47 |
| Msa0157290 | Msa1279910 | 0.808948 | 2.409171e-50 | -8.615850e-47 |
| Msa0165210 | Msa1279910 | 0.806836 | 6.778271e-50 | -8.615850e-47 |
| Msa0215320 | Msa1279910 | -0.824049 | 9.963336e-54 | -8.615850e-47 |
| Msa1249490 | Msa1279910 | 0.803704 | 3.070786e-49 | -8.615850e-47 |
| Msa1279910 | Msa1284680 | 0.837928 | 3.890832e-57 | -8.615850e-47 |
| Msa1279910 | Msa1403480 | 0.821566 | 3.771140e-53 | -8.615850e-47 |
| Msa1279910 | Msa1411020 | 0.806499 | 7.986212e-50 | -8.615850e-47 |
| Msa1279910 | Msa1439320 | 0.801945 | 7.084676e-49 | -8.615850e-47 |
| Msa1279910 | Msa1443060 | 0.819373 | 1.201950e-52 | -8.615850e-47 |
| Msa1279910 | Msa1451620 | -0.800306 | 1.533080e-48 | -8.615850e-47 |
| Msa1279910 | Msa1466540 | 0.804958 | 1.682671e-49 | -8.615850e-47 |
| Msa0395790 | Msa1279910 | 0.814897 | 1.218893e-51 | -8.615850e-47 |
| Msa0443260 | Msa1279910 | 0.811953 | 5.409778e-51 | -8.615850e-47 |
| Msa1014540 | Msa1279910 | 0.806170 | 9.367841e-50 | -8.615850e-47 |
| Msa1052830 | Msa1279910 | 0.807435 | 5.062825e-50 | -8.615850e-47 |
| Msa1075220 | Msa1279910 | -0.815051 | 1.126765e-51 | -8.615850e-47 |
| Msa0285450 | Msa1279910 | 0.807574 | 4.729276e-50 | -8.615850e-47 |
| Msa0330340 | Msa1279910 | 0.804149 | 2.481720e-49 | -8.615850e-47 |
| Msa0340450 | Msa1279910 | 0.804310 | 2.297037e-49 | -8.615850e-47 |
| Msa1121490 | Msa1279910 | 0.811278 | 7.584042e-51 | -8.615850e-47 |
| Msa1137570 | Msa1279910 | 0.819456 | 1.150353e-52 | -8.615850e-47 |
| Msa1139000 | Msa1279910 | -0.806902 | 6.563614e-50 | -8.615850e-47 |
| Msa1150210 | Msa1279910 | 0.801905 | 7.220304e-49 | -8.615850e-47 |
| Msa1162550 | Msa1279910 | -0.821944 | 3.083802e-53 | -8.615850e-47 |
| Msa0545700 | Msa1279910 | 0.809404 | 1.924464e-50 | -8.615850e-47 |
| Msa0562440 | Msa1279910 | 0.818702 | 1.707716e-52 | -8.615850e-47 |
| Msa0880140 | Msa1279910 | 0.805709 | 1.171155e-49 | -8.615850e-47 |
| Msa0899450 | Msa1279910 | 0.816257 | 6.070980e-52 | -8.615850e-47 |
| Msa0907070 | Msa1279910 | 0.805529 | 1.277781e-49 | -8.615850e-47 |
| Msa0925250 | Msa1279910 | 0.816908 | 4.339477e-52 | -8.615850e-47 |
| Msa0925290 | Msa1279910 | 0.812843 | 3.457768e-51 | -8.615850e-47 |
| Msa0927380 | Msa1279910 | 0.816963 | 4.216085e-52 | -8.615850e-47 |
| Msa0939250 | Msa1279910 | 0.811822 | 5.775192e-51 | -8.615850e-47 |
| Msa0964900 | Msa1279910 | 0.816592 | 5.107787e-52 | -8.615850e-47 |
| Msa0975220 | Msa1279910 | 0.800105 | 1.684914e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279910 | MtrunA17_Chr8g0349761 | 90.426 | 94 | 9 | 0 | 16 | 109 | 22 | 115 | 7.07e-54 | 170 |
| Msa1279910 | MtrunA17_Chr8g0349771 | 89.247 | 93 | 10 | 0 | 16 | 108 | 21 | 113 | 2.20e-52 | 166 |
| Msa1279910 | MtrunA17_Chr8g0349851 | 84.444 | 90 | 14 | 0 | 16 | 105 | 21 | 110 | 1.09e-45 | 149 |
| Msa1279910 | MtrunA17_Chr8g0349811 | 81.720 | 93 | 16 | 1 | 16 | 107 | 21 | 113 | 4.27e-45 | 147 |
| Msa1279910 | MtrunA17_Chr8g0349801 | 83.529 | 85 | 14 | 0 | 16 | 100 | 21 | 105 | 1.97e-44 | 145 |
| Msa1279910 | MtrunA17_Chr8g0349831 | 80.645 | 93 | 17 | 1 | 16 | 107 | 22 | 114 | 1.08e-43 | 144 |
| Msa1279910 | MtrunA17_Chr8g0349751 | 79.348 | 92 | 19 | 0 | 16 | 107 | 71 | 162 | 2.82e-43 | 144 |
| Msa1279910 | MtrunA17_Chr8g0349781 | 79.570 | 93 | 18 | 1 | 16 | 107 | 21 | 113 | 1.64e-42 | 140 |
| Msa1279910 | MtrunA17_Chr8g0349701 | 60.227 | 88 | 35 | 0 | 17 | 104 | 22 | 109 | 1.27e-32 | 115 |
| Msa1279910 | MtrunA17_Chr8g0349721 | 63.095 | 84 | 31 | 0 | 17 | 100 | 22 | 105 | 1.45e-32 | 115 |
| Msa1279910 | MtrunA17_Chr7g0247011 | 63.636 | 77 | 28 | 0 | 16 | 92 | 21 | 97 | 2.00e-29 | 106 |
| Msa1279910 | MtrunA17_Chr8g0349641 | 61.628 | 86 | 33 | 0 | 17 | 102 | 22 | 107 | 5.08e-29 | 105 |
| Msa1279910 | MtrunA17_Chr5g0425391 | 62.069 | 87 | 33 | 0 | 17 | 103 | 22 | 108 | 6.20e-29 | 105 |
| Msa1279910 | MtrunA17_Chr8g0349671 | 60.465 | 86 | 34 | 0 | 17 | 102 | 22 | 107 | 1.45e-28 | 104 |
| Msa1279910 | MtrunA17_Chr7g0247041 | 63.095 | 84 | 30 | 1 | 17 | 99 | 21 | 104 | 4.66e-28 | 103 |
| Msa1279910 | MtrunA17_Chr8g0349741 | 55.435 | 92 | 38 | 2 | 16 | 106 | 21 | 110 | 4.96e-27 | 100 |
| Msa1279910 | MtrunA17_Chr7g0267881 | 56.250 | 80 | 30 | 1 | 16 | 90 | 23 | 102 | 5.06e-22 | 86.3 |
| Msa1279910 | MtrunA17_Chr3g0118511 | 50.000 | 88 | 43 | 1 | 16 | 103 | 17 | 103 | 4.95e-21 | 84.7 |
| Msa1279910 | MtrunA17_Chr8g0349651 | 54.667 | 75 | 34 | 0 | 28 | 102 | 12 | 86 | 1.64e-20 | 83.2 |
| Msa1279910 | MtrunA17_Chr7g0247031 | 53.846 | 78 | 35 | 1 | 16 | 92 | 22 | 99 | 7.00e-19 | 79.0 |
| Msa1279910 | MtrunA17_Chr3g0131521 | 42.683 | 82 | 45 | 1 | 16 | 97 | 49 | 128 | 3.44e-15 | 69.3 |
| Msa1279910 | MtrunA17_Chr1g0160511 | 40.789 | 76 | 43 | 1 | 16 | 91 | 54 | 127 | 1.27e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279910 | AT3G61220.1 | 62.791 | 86 | 29 | 3 | 16 | 99 | 21 | 105 | 2.54e-28 | 104 |
| Msa1279910 | AT3G61220.2 | 62.791 | 86 | 29 | 3 | 16 | 99 | 28 | 112 | 3.48e-28 | 104 |
| Msa1279910 | AT3G61220.3 | 62.791 | 86 | 29 | 3 | 16 | 99 | 52 | 136 | 6.03e-28 | 103 |
| Msa1279910 | AT2G24190.2 | 59.302 | 86 | 32 | 3 | 16 | 99 | 26 | 110 | 3.88e-26 | 99.0 |
| Msa1279910 | AT2G24190.1 | 59.302 | 86 | 32 | 3 | 16 | 99 | 21 | 105 | 3.98e-26 | 98.6 |
| Msa1279910 | AT1G01800.1 | 56.627 | 83 | 34 | 2 | 16 | 96 | 19 | 101 | 6.51e-24 | 92.8 |
| Msa1279910 | AT5G51030.1 | 37.634 | 93 | 54 | 2 | 16 | 106 | 52 | 142 | 1.58e-16 | 73.2 |
| Msa1279910 | AT5G61830.1 | 41.935 | 93 | 52 | 1 | 16 | 106 | 51 | 143 | 2.49e-15 | 70.1 |
| Msa1279910 | AT5G61830.2 | 41.935 | 93 | 52 | 1 | 16 | 106 | 51 | 143 | 2.49e-15 | 70.1 |
Find 17 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATCAAGTTTGCCAAAT+TGG | 0.158459 | 8_3:+17644525 | None:intergenic |
| ATTTGGCAAACTTGATATTC+TGG | 0.220906 | 8_3:-17644522 | Msa1279910:intron |
| TGTAATTAATGACAAAGATT+TGG | 0.327767 | 8_3:-17644158 | Msa1279910:CDS |
| ATCTTTAGTTGAAATTGAAT+TGG | 0.348256 | 8_3:+17645083 | None:intergenic |
| AATATCAAGTTTGCCAAATT+GGG | 0.350754 | 8_3:+17644526 | None:intergenic |
| GAAAAGAGGTCTTCATGCTT+TGG | 0.381657 | 8_3:-17644648 | Msa1279910:CDS |
| AATTCAATTTCAACTAAAGA+TGG | 0.404243 | 8_3:-17645081 | Msa1279910:CDS |
| TTGGAAACACTCAAAGCATC+TGG | 0.405378 | 8_3:-17644629 | Msa1279910:CDS |
| GTTAACAATGCAGGGATTAG+TGG | 0.432718 | 8_3:-17644184 | Msa1279910:CDS |
| TGAATGCAGGTTAACAATGC+AGG | 0.492400 | 8_3:-17644193 | Msa1279910:intron |
| AGGGTTAGAGATAAGCAAAC+TGG | 0.506423 | 8_3:+17644135 | None:intergenic |
| GTTAAGCAGTTAGCTTCAGA+TGG | 0.527204 | 8_3:-17644701 | Msa1279910:CDS |
| ATTCAATTTCAACTAAAGAT+GGG | 0.536049 | 8_3:-17645080 | Msa1279910:CDS |
| ACAGCAAGAGATGAGAAAAG+AGG | 0.563297 | 8_3:-17644662 | Msa1279910:CDS |
| GAATGCAGGTTAACAATGCA+GGG | 0.567392 | 8_3:-17644192 | Msa1279910:intron |
| AGATGGGACAAACTGCAGAA+AGG | 0.596749 | 8_3:-17645064 | Msa1279910:intron |
| AGCTTCAGATGGAATCAAAG+TGG | 0.667222 | 8_3:-17644690 | Msa1279910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTTAAAAAAATGGAA+AGG | + | chr8_3:17644746-17644765 | None:intergenic | 15.0% |
| !! | CAAAGTTTCATTTAAAAAAA+TGG | + | chr8_3:17644751-17644770 | None:intergenic | 15.0% |
| !!! | ACTATTTTCATTTAAAACTA+AGG | + | chr8_3:17644808-17644827 | None:intergenic | 15.0% |
| !!! | GTTTTACTAAATCTTTATTT+AGG | - | chr8_3:17644865-17644884 | Msa1279910:intron | 15.0% |
| !! | TTTCATTTAAAAAAATGGAA+AGG | + | chr8_3:17644746-17644765 | None:intergenic | 15.0% |
| !! | CAAAGTTTCATTTAAAAAAA+TGG | + | chr8_3:17644751-17644770 | None:intergenic | 15.0% |
| !!! | ACTATTTTCATTTAAAACTA+AGG | + | chr8_3:17644808-17644827 | None:intergenic | 15.0% |
| !!! | GTTTTACTAAATCTTTATTT+AGG | - | chr8_3:17644865-17644884 | Msa1279910:intron | 15.0% |
| !! | ATCTTTAGTTGAAATTGAAT+TGG | + | chr8_3:17644142-17644161 | None:intergenic | 20.0% |
| !! | AATTCAATTTCAACTAAAGA+TGG | - | chr8_3:17644141-17644160 | Msa1279910:CDS | 20.0% |
| !! | ATTCAATTTCAACTAAAGAT+GGG | - | chr8_3:17644142-17644161 | Msa1279910:CDS | 20.0% |
| !!! | AAAGTTTTAGAATTCATTCT+TGG | - | chr8_3:17644211-17644230 | Msa1279910:intron | 20.0% |
| !! | ATTCTGGTAACATAAAAATT+TGG | - | chr8_3:17644716-17644735 | Msa1279910:intron | 20.0% |
| !! | AAGGAATAAAAAAAGTAACT+TGG | + | chr8_3:17644789-17644808 | None:intergenic | 20.0% |
| !!! | TTCTTGATAACTTAATTTGA+AGG | - | chr8_3:17644950-17644969 | Msa1279910:intron | 20.0% |
| !!! | TCTTGATAACTTAATTTGAA+GGG | - | chr8_3:17644951-17644970 | Msa1279910:intron | 20.0% |
| !! | TGTAATTAATGACAAAGATT+TGG | - | chr8_3:17645064-17645083 | Msa1279910:intron | 20.0% |
| !! | ATCTTTAGTTGAAATTGAAT+TGG | + | chr8_3:17644142-17644161 | None:intergenic | 20.0% |
| !! | AATTCAATTTCAACTAAAGA+TGG | - | chr8_3:17644141-17644160 | Msa1279910:CDS | 20.0% |
| !! | ATTCAATTTCAACTAAAGAT+GGG | - | chr8_3:17644142-17644161 | Msa1279910:CDS | 20.0% |
| !!! | AAAGTTTTAGAATTCATTCT+TGG | - | chr8_3:17644211-17644230 | Msa1279910:intron | 20.0% |
| !! | ATTCTGGTAACATAAAAATT+TGG | - | chr8_3:17644716-17644735 | Msa1279910:intron | 20.0% |
| !! | AAGGAATAAAAAAAGTAACT+TGG | + | chr8_3:17644789-17644808 | None:intergenic | 20.0% |
| !!! | TTCTTGATAACTTAATTTGA+AGG | - | chr8_3:17644950-17644969 | Msa1279910:intron | 20.0% |
| !!! | TCTTGATAACTTAATTTGAA+GGG | - | chr8_3:17644951-17644970 | Msa1279910:intron | 20.0% |
| !! | TGTAATTAATGACAAAGATT+TGG | - | chr8_3:17645064-17645083 | Msa1279910:intron | 20.0% |
| ! | TTAGAATTCATTCTTGGTAA+TGG | - | chr8_3:17644217-17644236 | Msa1279910:intron | 25.0% |
| ! | AATATCAAGTTTGCCAAATT+GGG | + | chr8_3:17644699-17644718 | None:intergenic | 25.0% |
| ! | CATTTAAAAAAATGGAAAGG+AGG | + | chr8_3:17644743-17644762 | None:intergenic | 25.0% |
| !!! | TATGAAAATTTGTTGAATGC+AGG | - | chr8_3:17645016-17645035 | Msa1279910:intron | 25.0% |
| ! | TTAGAATTCATTCTTGGTAA+TGG | - | chr8_3:17644217-17644236 | Msa1279910:intron | 25.0% |
| ! | AATATCAAGTTTGCCAAATT+GGG | + | chr8_3:17644699-17644718 | None:intergenic | 25.0% |
| ! | CATTTAAAAAAATGGAAAGG+AGG | + | chr8_3:17644743-17644762 | None:intergenic | 25.0% |
| !!! | TATGAAAATTTGTTGAATGC+AGG | - | chr8_3:17645016-17645035 | Msa1279910:intron | 25.0% |
| ! | CATTTTGTCAAATCCCAATT+TGG | - | chr8_3:17644683-17644702 | Msa1279910:CDS | 30.0% |
| GAATATCAAGTTTGCCAAAT+TGG | + | chr8_3:17644700-17644719 | None:intergenic | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | - | chr8_3:17644700-17644719 | Msa1279910:CDS | 30.0% | |
| TCATAACTCTTGTAACACAA+TGG | + | chr8_3:17644924-17644943 | None:intergenic | 30.0% | |
| ! | CATTTTGTCAAATCCCAATT+TGG | - | chr8_3:17644683-17644702 | Msa1279910:CDS | 30.0% |
| GAATATCAAGTTTGCCAAAT+TGG | + | chr8_3:17644700-17644719 | None:intergenic | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | - | chr8_3:17644700-17644719 | Msa1279910:CDS | 30.0% | |
| TCATAACTCTTGTAACACAA+TGG | + | chr8_3:17644924-17644943 | None:intergenic | 30.0% | |
| !! | GACAATATTCTAAAACCACG+CGG | - | chr8_3:17644435-17644454 | Msa1279910:intron | 35.0% |
| !! | ACAATATTCTAAAACCACGC+GGG | - | chr8_3:17644436-17644455 | Msa1279910:intron | 35.0% |
| ACAGGATCAAACAAAGGAAT+TGG | - | chr8_3:17644488-17644507 | Msa1279910:intron | 35.0% | |
| !! | GACAATATTCTAAAACCACG+CGG | - | chr8_3:17644435-17644454 | Msa1279910:intron | 35.0% |
| !! | ACAATATTCTAAAACCACGC+GGG | - | chr8_3:17644436-17644455 | Msa1279910:intron | 35.0% |
| ACAGGATCAAACAAAGGAAT+TGG | - | chr8_3:17644488-17644507 | Msa1279910:intron | 35.0% | |
| ! | GTTAAGCAGTTAGCTTCAGA+TGG | - | chr8_3:17644521-17644540 | Msa1279910:intron | 40.0% |
| AGCTTCAGATGGAATCAAAG+TGG | - | chr8_3:17644532-17644551 | Msa1279910:CDS | 40.0% | |
| ACAGCAAGAGATGAGAAAAG+AGG | - | chr8_3:17644560-17644579 | Msa1279910:CDS | 40.0% | |
| GAAAAGAGGTCTTCATGCTT+TGG | - | chr8_3:17644574-17644593 | Msa1279910:CDS | 40.0% | |
| ! | TTGGAAACACTCAAAGCATC+TGG | - | chr8_3:17644593-17644612 | Msa1279910:CDS | 40.0% |
| TGAATGCAGGTTAACAATGC+AGG | - | chr8_3:17645029-17645048 | Msa1279910:intron | 40.0% | |
| GAATGCAGGTTAACAATGCA+GGG | - | chr8_3:17645030-17645049 | Msa1279910:intron | 40.0% | |
| GTTAACAATGCAGGGATTAG+TGG | - | chr8_3:17645038-17645057 | Msa1279910:intron | 40.0% | |
| AGGGTTAGAGATAAGCAAAC+TGG | + | chr8_3:17645090-17645109 | None:intergenic | 40.0% | |
| ! | GTTAAGCAGTTAGCTTCAGA+TGG | - | chr8_3:17644521-17644540 | Msa1279910:intron | 40.0% |
| AGCTTCAGATGGAATCAAAG+TGG | - | chr8_3:17644532-17644551 | Msa1279910:CDS | 40.0% | |
| ACAGCAAGAGATGAGAAAAG+AGG | - | chr8_3:17644560-17644579 | Msa1279910:CDS | 40.0% | |
| GAAAAGAGGTCTTCATGCTT+TGG | - | chr8_3:17644574-17644593 | Msa1279910:CDS | 40.0% | |
| ! | TTGGAAACACTCAAAGCATC+TGG | - | chr8_3:17644593-17644612 | Msa1279910:CDS | 40.0% |
| TGAATGCAGGTTAACAATGC+AGG | - | chr8_3:17645029-17645048 | Msa1279910:intron | 40.0% | |
| GAATGCAGGTTAACAATGCA+GGG | - | chr8_3:17645030-17645049 | Msa1279910:intron | 40.0% | |
| GTTAACAATGCAGGGATTAG+TGG | - | chr8_3:17645038-17645057 | Msa1279910:intron | 40.0% | |
| AGGGTTAGAGATAAGCAAAC+TGG | + | chr8_3:17645090-17645109 | None:intergenic | 40.0% | |
| AGATGGGACAAACTGCAGAA+AGG | - | chr8_3:17644158-17644177 | Msa1279910:CDS | 45.0% | |
| GTTTGTTTCCAGGATTGCAG+TGG | - | chr8_3:17644463-17644482 | Msa1279910:intron | 45.0% | |
| GTGGTGACAGGATCAAACAA+AGG | - | chr8_3:17644482-17644501 | Msa1279910:intron | 45.0% | |
| AGATGGGACAAACTGCAGAA+AGG | - | chr8_3:17644158-17644177 | Msa1279910:CDS | 45.0% | |
| GTTTGTTTCCAGGATTGCAG+TGG | - | chr8_3:17644463-17644482 | Msa1279910:intron | 45.0% | |
| GTGGTGACAGGATCAAACAA+AGG | - | chr8_3:17644482-17644501 | Msa1279910:intron | 45.0% | |
| TCCAGGATTGCAGTGGTGAC+AGG | - | chr8_3:17644470-17644489 | Msa1279910:intron | 55.0% | |
| TCCTGTCACCACTGCAATCC+TGG | + | chr8_3:17644474-17644493 | None:intergenic | 55.0% | |
| TCCAGGATTGCAGTGGTGAC+AGG | - | chr8_3:17644470-17644489 | Msa1279910:intron | 55.0% | |
| TCCTGTCACCACTGCAATCC+TGG | + | chr8_3:17644474-17644493 | None:intergenic | 55.0% | |
| GGAAACAAACACAGCCCGCG+TGG | + | chr8_3:17644453-17644472 | None:intergenic | 60.0% | |
| ! | CGCGGGCTGTGTTTGTTTCC+AGG | - | chr8_3:17644453-17644472 | Msa1279910:intron | 60.0% |
| GGAAACAAACACAGCCCGCG+TGG | + | chr8_3:17644453-17644472 | None:intergenic | 60.0% | |
| ! | CGCGGGCTGTGTTTGTTTCC+AGG | - | chr8_3:17644453-17644472 | Msa1279910:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 17644132 | 17645112 | 17644132 | ID=Msa1279910;Name=Msa1279910 |
| chr8_3 | mRNA | 17644132 | 17645112 | 17644132 | ID=Msa1279910-mRNA-1;Parent=Msa1279910;Name=Msa1279910-mRNA-1;_AED=0.68;_eAED=0.68;_QI=0|0|0|0.33|1|1|3|0|109 |
| chr8_3 | exon | 17645065 | 17645112 | 17645065 | ID=Msa1279910-mRNA-1:exon:6841;Parent=Msa1279910-mRNA-1 |
| chr8_3 | exon | 17644523 | 17644726 | 17644523 | ID=Msa1279910-mRNA-1:exon:6840;Parent=Msa1279910-mRNA-1 |
| chr8_3 | exon | 17644132 | 17644206 | 17644132 | ID=Msa1279910-mRNA-1:exon:6839;Parent=Msa1279910-mRNA-1 |
| chr8_3 | CDS | 17645065 | 17645112 | 17645065 | ID=Msa1279910-mRNA-1:cds;Parent=Msa1279910-mRNA-1 |
| chr8_3 | CDS | 17644523 | 17644726 | 17644523 | ID=Msa1279910-mRNA-1:cds;Parent=Msa1279910-mRNA-1 |
| chr8_3 | CDS | 17644132 | 17644206 | 17644132 | ID=Msa1279910-mRNA-1:cds;Parent=Msa1279910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
