AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0931730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931730 MtrunA17_Chr2g0282181 94.295 298 6 4 1 298 1 287 0.0 569
Msa0931730 MtrunA17_Chr4g0027101 39.535 258 144 3 21 276 3 250 1.22e-54 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931730 AT5G22620.4 45.631 206 111 1 75 279 31 236 7.94e-61 200
Msa0931730 AT5G22620.3 45.631 206 111 1 75 279 31 236 7.94e-61 200
Msa0931730 AT5G22620.6 45.631 206 111 1 75 279 31 236 9.78e-61 200
Msa0931730 AT5G22620.1 45.631 206 111 1 75 279 31 236 1.01e-60 201
Msa0931730 AT5G22620.5 45.631 206 111 1 75 279 31 236 1.01e-60 201
Msa0931730 AT5G22620.2 45.631 206 111 1 75 279 31 236 1.01e-60 201
Msa0931730 AT3G50520.1 30.818 159 105 5 92 246 15 172 3.42e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATGAAATGAAAAGAATT+TGG 0.266093 6_2:+81633199 Msa0931730:five_prime_UTR
TCTACCATTCATGACAAAAT+TGG 0.307684 6_2:-81634980 None:intergenic
AGCAAACTGCTGAAATTATA+TGG 0.326556 6_2:+81634141 Msa0931730:intron
ACTTGCACTGCTTTAGGCCT+TGG 0.331082 6_2:+81635194 Msa0931730:CDS
TTCAGCAACCAAGAGATTTC+AGG 0.337173 6_2:-81635951 None:intergenic
CTAACCTTGGCACGAGATAT+TGG 0.340655 6_2:-81634036 None:intergenic
TGATGAAGTGATTAACTCAT+TGG 0.341759 6_2:-81633688 None:intergenic
ACTAATAATGCTTACCTCTC+GGG 0.379397 6_2:-81635218 None:intergenic
GCATTAACTTGCACTGCTTT+AGG 0.388052 6_2:+81635188 Msa0931730:CDS
AAGCAAGCACGGTGTTAGTA+TGG 0.392916 6_2:+81633248 Msa0931730:exon
GGATGCTAAGCAAATATATA+AGG 0.396264 6_2:+81634927 Msa0931730:CDS
GAATGCTGAAAGTAGAATTC+AGG 0.401668 6_2:+81633749 Msa0931730:CDS
ATAAGGAGGAATACAGAATC+TGG 0.408630 6_2:+81634944 Msa0931730:CDS
TTCGAGCATTGCTTCTCCTC+TGG 0.441980 6_2:-81635882 None:intergenic
GGATAGCTGCAAGAGATTGT+TGG 0.443903 6_2:+81635022 Msa0931730:CDS
ATATCTCTCTATCACCTTGA+AGG 0.451579 6_2:+81634209 Msa0931730:CDS
AAGCACGGTGTTAGTATGGC+AGG 0.454438 6_2:+81633252 Msa0931730:exon
TCCCACCGTTGTTGATATCA+AGG 0.457935 6_2:-81635838 None:intergenic
GATATCCTGTACAAGATCTC+TGG 0.459702 6_2:+81635001 Msa0931730:CDS
AGACTCAGTACACTAATCAT+TGG 0.470577 6_2:-81636104 None:intergenic
TTGTCAGTACTAACTGAGGC+TGG 0.472288 6_2:+81633946 Msa0931730:CDS
GAGAAGAAGCGAAGGAGGAG+CGG 0.474449 6_2:-81633338 None:intergenic
CAACACTAGTGAGTGCTTGA+TGG 0.481250 6_2:+81636020 Msa0931730:three_prime_UTR
TTGAGTTAACCTATGGCAGC+AGG 0.491914 6_2:-81633426 None:intergenic
AGAAGAAGCGAAGGAGGAGC+GGG 0.498095 6_2:-81633337 None:intergenic
TAAGGCATGGTCTTAGCACT+TGG 0.512686 6_2:+81633727 Msa0931730:CDS
TGACTCACAAATCAATATTG+AGG 0.513537 6_2:+81635165 Msa0931730:CDS
CAGTGAATGCGGCGAGTGAG+AGG 0.516000 6_2:-81633372 None:intergenic
GACTCACAAATCAATATTGA+GGG 0.516265 6_2:+81635166 Msa0931730:CDS
ACTTCATACCCTGCTGCCAT+AGG 0.523920 6_2:+81633417 Msa0931730:CDS
GCTTGCTTCACCTTCTCTTG+TGG 0.524058 6_2:-81633233 None:intergenic
CCATTCATGACAAAATTGGC+TGG 0.527605 6_2:-81634976 None:intergenic
TGTCAGTACTAACTGAGGCT+GGG 0.534843 6_2:+81633947 Msa0931730:CDS
ATATCCTGCCTGAAATCTCT+TGG 0.545845 6_2:+81635943 Msa0931730:exon
TTGGTTGCTGAATGCAAGGA+AGG 0.547319 6_2:+81635962 Msa0931730:three_prime_UTR
AGTGAATCAGTGTAAACCAA+TGG 0.551565 6_2:-81634179 None:intergenic
ATGCTTACCTCTCGGGGCCA+AGG 0.558444 6_2:-81635211 None:intergenic
GAAAGTAGAACCACAAGAGA+AGG 0.559878 6_2:+81633223 Msa0931730:five_prime_UTR
GTCAGTACTAACTGAGGCTG+GGG 0.566390 6_2:+81633948 Msa0931730:CDS
TCTCTTGGTTGCTGAATGCA+AGG 0.566644 6_2:+81635958 Msa0931730:three_prime_UTR
AGTACTAACTGAGGCTGGGG+TGG 0.571281 6_2:+81633951 Msa0931730:CDS
AGCACGGTGTTAGTATGGCA+GGG 0.576311 6_2:+81633253 Msa0931730:exon
TGCGGCGAGTGAGAGGAAGA+TGG 0.577745 6_2:-81633365 None:intergenic
ATGGAGCTGAGAAGAAGCGA+AGG 0.586294 6_2:-81633346 None:intergenic
AGAGAGATGCAAGAAAGCAT+TGG 0.588842 6_2:+81633981 Msa0931730:CDS
GAGCTGAGAAGAAGCGAAGG+AGG 0.593039 6_2:-81633343 None:intergenic
GCTATCCAGAGATCTTGTAC+AGG 0.594243 6_2:-81635006 None:intergenic
AAGAGAAGGTGAAGCAAGCA+CGG 0.595444 6_2:+81633237 Msa0931730:five_prime_UTR
ACTGCTGAAATTATATGGCA+AGG 0.595942 6_2:+81634146 Msa0931730:CDS
GCACGGTGTTAGTATGGCAG+GGG 0.601938 6_2:+81633254 Msa0931730:exon
CCCTTGATATCAACAACGGT+GGG 0.602416 6_2:+81635837 Msa0931730:CDS
CTAATAATGCTTACCTCTCG+GGG 0.611994 6_2:-81635217 None:intergenic
GGCAACTCATACAGAAGCTG+AGG 0.612162 6_2:+81636041 Msa0931730:three_prime_UTR
CAGTCCAATATCTCGTGCCA+AGG 0.616021 6_2:+81634032 Msa0931730:CDS
ATATTGGACTGGCAAGACAT+TGG 0.617224 6_2:-81634020 None:intergenic
CGTTCCCTTGATATCAACAA+CGG 0.619427 6_2:+81635833 Msa0931730:CDS
TGCTAAGCAAATATATAAGG+AGG 0.624637 6_2:+81634930 Msa0931730:CDS
CCCACCGTTGTTGATATCAA+GGG 0.631670 6_2:-81635837 None:intergenic
TCCCTTGATATCAACAACGG+TGG 0.632999 6_2:+81635836 Msa0931730:CDS
GAAATAGTCAGACATGGTGA+TGG 0.635078 6_2:-81633315 None:intergenic
GCAACCAAGAGATTTCAGGC+AGG 0.642711 6_2:-81635947 None:intergenic
CTTTAGGCCTTGGCCCCGAG+AGG 0.643406 6_2:+81635204 Msa0931730:CDS
TGAGTTAACCTATGGCAGCA+GGG 0.655476 6_2:-81633425 None:intergenic
CTTGGCACGAGATATTGGAC+TGG 0.659086 6_2:-81634031 None:intergenic
TAGAAGTTGAGCAGTGAATG+CGG 0.662780 6_2:-81633383 None:intergenic
AGCTGCAAGAGATTGTTGGA+AGG 0.663605 6_2:+81635026 Msa0931730:CDS
GAGCGGGAAATAGTCAGACA+TGG 0.675401 6_2:-81633321 None:intergenic
AGATTTGTCAGTACTAACTG+AGG 0.717407 6_2:+81633942 Msa0931730:CDS
GTATTCAACTTCAACACCAG+AGG 0.718413 6_2:+81635866 Msa0931730:CDS
TGGTTGTGAGCACAACAAAG+TGG 0.749709 6_2:-81633295 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAGAATAAACATGA+AGG - chr6_2:81633487-81633506 None:intergenic 15.0%
!!! ACTATTATTTTATAGTTAAC+TGG + chr6_2:81634327-81634346 Msa0931730:intron 15.0%
!!! GATAGATTTTATATAGTTTA+AGG - chr6_2:81634450-81634469 None:intergenic 15.0%
!! ACTATATTTATATAGTTTAG+AGG + chr6_2:81634568-81634587 Msa0931730:intron 15.0%
!! TAAAACCAATGTTAAAAAAT+TGG - chr6_2:81635671-81635690 None:intergenic 15.0%
!! TTCTTTAAATTGAATAAGTG+AGG + chr6_2:81633496-81633515 Msa0931730:intron 20.0%
!! ACAGAAAAATCAATACTATT+TGG - chr6_2:81633624-81633643 None:intergenic 20.0%
!! ATCAATTTAATGACAATGAA+TGG - chr6_2:81633901-81633920 None:intergenic 20.0%
!! TAAATTGATCATATGTGTTT+AGG + chr6_2:81633912-81633931 Msa0931730:intron 20.0%
!! AAATTGATCATATGTGTTTA+GGG + chr6_2:81633913-81633932 Msa0931730:intron 20.0%
!! TGATAGTCAATTTATTTAAC+TGG + chr6_2:81634101-81634120 Msa0931730:intron 20.0%
!!! TCAATTTATTTAACTGGTTT+TGG + chr6_2:81634107-81634126 Msa0931730:intron 20.0%
!! ATATAGTTTAAGGACTAAAT+TGG - chr6_2:81634440-81634459 None:intergenic 20.0%
!! ACAGATTTGTATATACTTTA+AGG - chr6_2:81634481-81634500 None:intergenic 20.0%
!! TTTACATTTCATATACCATA+AGG + chr6_2:81634538-81634557 Msa0931730:intron 20.0%
!! AATATAGTAAATAGTCCTTA+TGG - chr6_2:81634556-81634575 None:intergenic 20.0%
!!! GACTAAATTGATGATTTATT+TGG + chr6_2:81634620-81634639 Msa0931730:intron 20.0%
!! CTATAGTTTAATCATAAAGA+AGG - chr6_2:81634704-81634723 None:intergenic 20.0%
!! CTTCTTTATGATTAAACTAT+AGG + chr6_2:81634702-81634721 Msa0931730:intron 20.0%
!!! TATTTTTACAATAGTATTCC+AGG + chr6_2:81635268-81635287 Msa0931730:intron 20.0%
!! ACTGAATCTTTATCAAAAAA+TGG - chr6_2:81635358-81635377 None:intergenic 20.0%
! GAGATGAAATGAAAAGAATT+TGG + chr6_2:81633199-81633218 Msa0931730:five_prime_UTR 25.0%
! TTTAAATTGAATAAGTGAGG+AGG + chr6_2:81633499-81633518 Msa0931730:intron 25.0%
! GACTATTTGTAAAGAAATAC+TGG + chr6_2:81633521-81633540 Msa0931730:intron 25.0%
!!! AGTATTGATTTTTCTGTAAC+TGG + chr6_2:81633627-81633646 Msa0931730:CDS 25.0%
!!! TTTTGTTTTGATGTTTCACA+TGG + chr6_2:81633854-81633873 Msa0931730:intron 25.0%
! TAGTTTAGGGACTAAATTTA+TGG - chr6_2:81634406-81634425 None:intergenic 25.0%
!! AAATCAGTTTGCTTCTAATT+TGG + chr6_2:81634897-81634916 Msa0931730:intron 25.0%
! ACATGAAGTTATAAATGGTA+CGG - chr6_2:81635330-81635349 None:intergenic 25.0%
! CTAGAACATGAAGTTATAAA+TGG - chr6_2:81635335-81635354 None:intergenic 25.0%
! CCATTCTATGATAAAAACAA+TGG - chr6_2:81635998-81636017 None:intergenic 25.0%
!!! CCATTGTTTTTATCATAGAA+TGG + chr6_2:81635995-81636014 Msa0931730:three_prime_UTR 25.0%
!!! AAACTCTAAGATTTTGTGTA+GGG + chr6_2:81636181-81636200 Msa0931730:three_prime_UTR 25.0%
AGTTGAATTGAGTTAACCTA+TGG - chr6_2:81633436-81633455 None:intergenic 30.0%
!! ATTGATTTTTCTGTAACTGG+TGG + chr6_2:81633630-81633649 Msa0931730:CDS 30.0%
TGATGAAGTGATTAACTCAT+TGG - chr6_2:81633691-81633710 None:intergenic 30.0%
! CAAAGAAAGTCACTCTTTTA+AGG + chr6_2:81633709-81633728 Msa0931730:CDS 30.0%
AGCAAACTGCTGAAATTATA+TGG + chr6_2:81634141-81634160 Msa0931730:intron 30.0%
! TCTGCTCAACTTTAAAAACA+AGG + chr6_2:81634254-81634273 Msa0931730:intron 30.0%
AGTTTAAGGACTAAATTGGT+GGG - chr6_2:81634436-81634455 None:intergenic 30.0%
TAGTTTAAGGACTAAATTGG+TGG - chr6_2:81634437-81634456 None:intergenic 30.0%
GTTTAATCATAAAGAAGGAC+AGG - chr6_2:81634699-81634718 None:intergenic 30.0%
ACTTTGCTCTGACTTTAAAT+AGG + chr6_2:81634776-81634795 Msa0931730:intron 30.0%
CTTTGCTCTGACTTTAAATA+GGG + chr6_2:81634777-81634796 Msa0931730:intron 30.0%
GGATGCTAAGCAAATATATA+AGG + chr6_2:81634927-81634946 Msa0931730:CDS 30.0%
TGCTAAGCAAATATATAAGG+AGG + chr6_2:81634930-81634949 Msa0931730:CDS 30.0%
TCTACCATTCATGACAAAAT+TGG - chr6_2:81634983-81635002 None:intergenic 30.0%
CAATGGCAAAAAAATCTTAC+AGG - chr6_2:81635066-81635085 None:intergenic 30.0%
TGACTCACAAATCAATATTG+AGG + chr6_2:81635165-81635184 Msa0931730:CDS 30.0%
GACTCACAAATCAATATTGA+GGG + chr6_2:81635166-81635185 Msa0931730:CDS 30.0%
AAACATGAAATTTCTTCTCC+TGG - chr6_2:81635289-81635308 None:intergenic 30.0%
AGGTTCAACTACTGTTTAAT+TGG + chr6_2:81635483-81635502 Msa0931730:intron 30.0%
CTAATTCAATTGGTTGAATC+GGG - chr6_2:81635638-81635657 None:intergenic 30.0%
GCTAATTCAATTGGTTGAAT+CGG - chr6_2:81635639-81635658 None:intergenic 30.0%
ACCAATTGAATTAGCTAGTT+CGG + chr6_2:81635644-81635663 Msa0931730:intron 30.0%
!!! TCGGTCCAATTTTTTAACAT+TGG + chr6_2:81635663-81635682 Msa0931730:intron 30.0%
! GATAGAGCATCAAATTCAAA+TGG - chr6_2:81635764-81635783 None:intergenic 30.0%
!!! CAAACTCTAAGATTTTGTGT+AGG + chr6_2:81636180-81636199 Msa0931730:three_prime_UTR 30.0%
ACATTTACTCCAATCCAACA+TGG + chr6_2:81633558-81633577 Msa0931730:intron 35.0%
CATTTACTCCAATCCAACAT+GGG + chr6_2:81633559-81633578 Msa0931730:intron 35.0%
!!! AAAGTCACTCTTTTAAGGCA+TGG + chr6_2:81633714-81633733 Msa0931730:CDS 35.0%
GAATGCTGAAAGTAGAATTC+AGG + chr6_2:81633749-81633768 Msa0931730:CDS 35.0%
CAAAACAAAAACTTCAGTCC+TGG - chr6_2:81633844-81633863 None:intergenic 35.0%
AGATTTGTCAGTACTAACTG+AGG + chr6_2:81633942-81633961 Msa0931730:CDS 35.0%
ACTGCTGAAATTATATGGCA+AGG + chr6_2:81634146-81634165 Msa0931730:CDS 35.0%
AGTGAATCAGTGTAAACCAA+TGG - chr6_2:81634182-81634201 None:intergenic 35.0%
ATATCTCTCTATCACCTTGA+AGG + chr6_2:81634209-81634228 Msa0931730:CDS 35.0%
CACCTTGAAGGATTGAAAAA+TGG + chr6_2:81634221-81634240 Msa0931730:CDS 35.0%
!! CACCATTTTTCAATCCTTCA+AGG - chr6_2:81634226-81634245 None:intergenic 35.0%
!!! TTTTAAAGTTGAGCAGAGAC+AGG - chr6_2:81634251-81634270 None:intergenic 35.0%
! TAACTGGCATACTTGTTGAT+AGG + chr6_2:81634343-81634362 Msa0931730:intron 35.0%
TCTCTAACATCCTAATAGCA+GGG + chr6_2:81634509-81634528 Msa0931730:intron 35.0%
TAAATTCAGTCCCTGCTATT+AGG - chr6_2:81634522-81634541 None:intergenic 35.0%
TGAAGAGAGAAGGATAGTTT+AGG + chr6_2:81634597-81634616 Msa0931730:intron 35.0%
GAAGAGAGAAGGATAGTTTA+GGG + chr6_2:81634598-81634617 Msa0931730:intron 35.0%
!! AGTCAGAGCAAAGTTTTGTA+TGG - chr6_2:81634770-81634789 None:intergenic 35.0%
ATCGATCCTTGCATTGAATA+CGG + chr6_2:81634839-81634858 Msa0931730:intron 35.0%
AAAACTCCGTATTCAATGCA+AGG - chr6_2:81634848-81634867 None:intergenic 35.0%
! TCAGTTTGCTTCTAATTTGG+AGG + chr6_2:81634900-81634919 Msa0931730:intron 35.0%
ATAAGGAGGAATACAGAATC+TGG + chr6_2:81634944-81634963 Msa0931730:CDS 35.0%
AAGATTCATCTTACTCTGCA+GGG + chr6_2:81635125-81635144 Msa0931730:intron 35.0%
ACTAATAATGCTTACCTCTC+GGG - chr6_2:81635221-81635240 None:intergenic 35.0%
GACTAATAATGCTTACCTCT+CGG - chr6_2:81635222-81635241 None:intergenic 35.0%
TGTCAAATGATACCATGATC+AGG + chr6_2:81635397-81635416 Msa0931730:intron 35.0%
!!! GTTGTTTTAGGCGTTTCAAA+TGG + chr6_2:81635421-81635440 Msa0931730:intron 35.0%
AGATCGAATTGTGAGACTTT+CGG + chr6_2:81635449-81635468 Msa0931730:intron 35.0%
ACAGTTCAAGTCAGTTAATC+TGG + chr6_2:81635558-81635577 Msa0931730:intron 35.0%
ACCGAACTAGCTAATTCAAT+TGG - chr6_2:81635648-81635667 None:intergenic 35.0%
AATGTCAGCTGCTAGAATAT+TGG - chr6_2:81635786-81635805 None:intergenic 35.0%
AGACATTGATCACAATGTTC+AGG + chr6_2:81635807-81635826 Msa0931730:intron 35.0%
AGACTCAGTACACTAATCAT+TGG - chr6_2:81636107-81636126 None:intergenic 35.0%
GAAAGTAGAACCACAAGAGA+AGG + chr6_2:81633223-81633242 Msa0931730:five_prime_UTR 40.0%
GAAATAGTCAGACATGGTGA+TGG - chr6_2:81633318-81633337 None:intergenic 40.0%
TAGAAGTTGAGCAGTGAATG+CGG - chr6_2:81633386-81633405 None:intergenic 40.0%
AGCTAGCTGATGACATATAG+CGG - chr6_2:81633802-81633821 None:intergenic 40.0%
ATGACAATGAATGGCAGATG+TGG - chr6_2:81633892-81633911 None:intergenic 40.0%
! AGAGAGATGCAAGAAAGCAT+TGG + chr6_2:81633981-81634000 Msa0931730:CDS 40.0%
!! ATATTGGACTGGCAAGACAT+TGG - chr6_2:81634023-81634042 None:intergenic 40.0%
GCAAGGAAGAGAAAAACCAT+TGG + chr6_2:81634163-81634182 Msa0931730:CDS 40.0%
GTCTCTAACATCCTAATAGC+AGG + chr6_2:81634508-81634527 Msa0931730:intron 40.0%
CAAGGATCGATTAATCCAAG+GGG - chr6_2:81634830-81634849 None:intergenic 40.0%
GCAAGGATCGATTAATCCAA+GGG - chr6_2:81634831-81634850 None:intergenic 40.0%
TGCAAGGATCGATTAATCCA+AGG - chr6_2:81634832-81634851 None:intergenic 40.0%
CCATTCATGACAAAATTGGC+TGG - chr6_2:81634979-81634998 None:intergenic 40.0%
! CCAGCCAATTTTGTCATGAA+TGG + chr6_2:81634976-81634995 Msa0931730:CDS 40.0%
GATATCCTGTACAAGATCTC+TGG + chr6_2:81635001-81635020 Msa0931730:CDS 40.0%
CTTGCAACACTGTGTATCAA+TGG - chr6_2:81635083-81635102 None:intergenic 40.0%
CAAGATTCATCTTACTCTGC+AGG + chr6_2:81635124-81635143 Msa0931730:intron 40.0%
!! GCATTAACTTGCACTGCTTT+AGG + chr6_2:81635188-81635207 Msa0931730:CDS 40.0%
CTAATAATGCTTACCTCTCG+GGG - chr6_2:81635220-81635239 None:intergenic 40.0%
CCTAAAACAACACCTGATCA+TGG - chr6_2:81635412-81635431 None:intergenic 40.0%
!!! CCATGATCAGGTGTTGTTTT+AGG + chr6_2:81635409-81635428 Msa0931730:intron 40.0%
AATTGTGAGACTTTCGGTCA+TGG + chr6_2:81635455-81635474 Msa0931730:intron 40.0%
CGTTCCCTTGATATCAACAA+CGG + chr6_2:81635833-81635852 Msa0931730:CDS 40.0%
GTATTCAACTTCAACACCAG+AGG + chr6_2:81635866-81635885 Msa0931730:CDS 40.0%
ATATCCTGCCTGAAATCTCT+TGG + chr6_2:81635943-81635962 Msa0931730:exon 40.0%
TTCAGCAACCAAGAGATTTC+AGG - chr6_2:81635954-81635973 None:intergenic 40.0%
AAGAGAAGGTGAAGCAAGCA+CGG + chr6_2:81633237-81633256 Msa0931730:five_prime_UTR 45.0%
! AAGCAAGCACGGTGTTAGTA+TGG + chr6_2:81633248-81633267 Msa0931730:exon 45.0%
TGGTTGTGAGCACAACAAAG+TGG - chr6_2:81633298-81633317 None:intergenic 45.0%
TGAGTTAACCTATGGCAGCA+GGG - chr6_2:81633428-81633447 None:intergenic 45.0%
TTGAGTTAACCTATGGCAGC+AGG - chr6_2:81633429-81633448 None:intergenic 45.0%
AACTTCAGCCCATGTTGGAT+TGG - chr6_2:81633570-81633589 None:intergenic 45.0%
! AATCCAACATGGGCTGAAGT+TGG + chr6_2:81633569-81633588 Msa0931730:intron 45.0%
AAACCAACTTCAGCCCATGT+TGG - chr6_2:81633575-81633594 None:intergenic 45.0%
!!! ATGGGCTGAAGTTGGTTTTG+TGG + chr6_2:81633577-81633596 Msa0931730:intron 45.0%
! TAAGGCATGGTCTTAGCACT+TGG + chr6_2:81633727-81633746 Msa0931730:CDS 45.0%
AACTTCAGTCCTGGAAGCAA+GGG - chr6_2:81633835-81633854 None:intergenic 45.0%
AAACTTCAGTCCTGGAAGCA+AGG - chr6_2:81633836-81633855 None:intergenic 45.0%
TTGTCAGTACTAACTGAGGC+TGG + chr6_2:81633946-81633965 Msa0931730:CDS 45.0%
TGTCAGTACTAACTGAGGCT+GGG + chr6_2:81633947-81633966 Msa0931730:CDS 45.0%
CTAACCTTGGCACGAGATAT+TGG - chr6_2:81634039-81634058 None:intergenic 45.0%
CAATATCTCGTGCCAAGGTT+AGG + chr6_2:81634037-81634056 Msa0931730:intron 45.0%
! GGTGGGAGTGTGATAGTTTA+GGG - chr6_2:81634419-81634438 None:intergenic 45.0%
! TGGTGGGAGTGTGATAGTTT+AGG - chr6_2:81634420-81634439 None:intergenic 45.0%
! GAGGCTAAGTTGAAGAGAGA+AGG + chr6_2:81634587-81634606 Msa0931730:intron 45.0%
TAGTCCACCGAAATTTGCAC+CGG - chr6_2:81634745-81634764 None:intergenic 45.0%
TGCTTCTAATTTGGAGGCAG+TGG + chr6_2:81634906-81634925 Msa0931730:intron 45.0%
GCTATCCAGAGATCTTGTAC+AGG - chr6_2:81635009-81635028 None:intergenic 45.0%
GGATAGCTGCAAGAGATTGT+TGG + chr6_2:81635022-81635041 Msa0931730:CDS 45.0%
AGCTGCAAGAGATTGTTGGA+AGG + chr6_2:81635026-81635045 Msa0931730:CDS 45.0%
CAGCAAGACTGCAATGTAAC+CGG + chr6_2:81635583-81635602 Msa0931730:intron 45.0%
AGCAAGACTGCAATGTAACC+GGG + chr6_2:81635584-81635603 Msa0931730:intron 45.0%
GATCTAGCCAACCAACGAAA+TGG + chr6_2:81635606-81635625 Msa0931730:intron 45.0%
CAATTGGTTGAATCGGGAAC+TGG - chr6_2:81635632-81635651 None:intergenic 45.0%
GTTCATGCTACACATGCAAG+AGG - chr6_2:81635733-81635752 None:intergenic 45.0%
TCCCTTGATATCAACAACGG+TGG + chr6_2:81635836-81635855 Msa0931730:CDS 45.0%
CCCACCGTTGTTGATATCAA+GGG - chr6_2:81635840-81635859 None:intergenic 45.0%
CCCTTGATATCAACAACGGT+GGG + chr6_2:81635837-81635856 Msa0931730:CDS 45.0%
TCCCACCGTTGTTGATATCA+AGG - chr6_2:81635841-81635860 None:intergenic 45.0%
TCTCTTGGTTGCTGAATGCA+AGG + chr6_2:81635958-81635977 Msa0931730:three_prime_UTR 45.0%
TTGGTTGCTGAATGCAAGGA+AGG + chr6_2:81635962-81635981 Msa0931730:three_prime_UTR 45.0%
CAACACTAGTGAGTGCTTGA+TGG + chr6_2:81636020-81636039 Msa0931730:three_prime_UTR 45.0%
!!! ATATATTTTTAATATGTTTA+TGG + chr6_2:81634280-81634299 Msa0931730:intron 5.0%
!! AATATTTATCAAAAATATTA+AGG - chr6_2:81636139-81636158 None:intergenic 5.0%
GCTTGCTTCACCTTCTCTTG+TGG - chr6_2:81633236-81633255 None:intergenic 50.0%
! AAGCACGGTGTTAGTATGGC+AGG + chr6_2:81633252-81633271 Msa0931730:exon 50.0%
! AGCACGGTGTTAGTATGGCA+GGG + chr6_2:81633253-81633272 Msa0931730:exon 50.0%
GAGCGGGAAATAGTCAGACA+TGG - chr6_2:81633324-81633343 None:intergenic 50.0%
ATGGAGCTGAGAAGAAGCGA+AGG - chr6_2:81633349-81633368 None:intergenic 50.0%
ACTTCATACCCTGCTGCCAT+AGG + chr6_2:81633417-81633436 Msa0931730:CDS 50.0%
ATCCGTTATCCCTTGCTTCC+AGG + chr6_2:81633823-81633842 Msa0931730:intron 50.0%
GTCCTGGAAGCAAGGGATAA+CGG - chr6_2:81633828-81633847 None:intergenic 50.0%
GTCAGTACTAACTGAGGCTG+GGG + chr6_2:81633948-81633967 Msa0931730:CDS 50.0%
CTTGGCACGAGATATTGGAC+TGG - chr6_2:81634034-81634053 None:intergenic 50.0%
CAGTCCAATATCTCGTGCCA+AGG + chr6_2:81634032-81634051 Msa0931730:CDS 50.0%
ATTTCACCGCTGCCTAACCT+TGG - chr6_2:81634052-81634071 None:intergenic 50.0%
ATTCCCCCCGGTGCAAATTT+CGG + chr6_2:81634735-81634754 Msa0931730:intron 50.0%
AGTCCACCGAAATTTGCACC+GGG - chr6_2:81634744-81634763 None:intergenic 50.0%
! ACTTGCACTGCTTTAGGCCT+TGG + chr6_2:81635194-81635213 Msa0931730:CDS 50.0%
GACTTTCGGTCATGGTACAC+AGG + chr6_2:81635463-81635482 Msa0931730:intron 50.0%
! TTCGTTGGTTGGCTAGATCC+CGG - chr6_2:81635605-81635624 None:intergenic 50.0%
GAACTGGCCATTTCGTTGGT+TGG - chr6_2:81635616-81635635 None:intergenic 50.0%
! TTCGAGCATTGCTTCTCCTC+TGG - chr6_2:81635885-81635904 None:intergenic 50.0%
GCAACCAAGAGATTTCAGGC+AGG - chr6_2:81635950-81635969 None:intergenic 50.0%
GGCAACTCATACAGAAGCTG+AGG + chr6_2:81636041-81636060 Msa0931730:three_prime_UTR 50.0%
! GCACGGTGTTAGTATGGCAG+GGG + chr6_2:81633254-81633273 Msa0931730:exon 55.0%
AGAAGAAGCGAAGGAGGAGC+GGG - chr6_2:81633340-81633359 None:intergenic 55.0%
GAGAAGAAGCGAAGGAGGAG+CGG - chr6_2:81633341-81633360 None:intergenic 55.0%
GAGCTGAGAAGAAGCGAAGG+AGG - chr6_2:81633346-81633365 None:intergenic 55.0%
AGTACTAACTGAGGCTGGGG+TGG + chr6_2:81633951-81633970 Msa0931730:CDS 55.0%
GGTCTAAGTTCGATTCCCCC+CGG + chr6_2:81634723-81634742 Msa0931730:intron 55.0%
TCCACCGAAATTTGCACCGG+GGG - chr6_2:81634742-81634761 None:intergenic 55.0%
GTCCACCGAAATTTGCACCG+GGG - chr6_2:81634743-81634762 None:intergenic 55.0%
ATAGGGCTCCCGCAAGTAGA+CGG + chr6_2:81634794-81634813 Msa0931730:intron 55.0%
CAATCCCACCGTCTACTTGC+GGG - chr6_2:81634805-81634824 None:intergenic 55.0%
CCAATCCCACCGTCTACTTG+CGG - chr6_2:81634806-81634825 None:intergenic 55.0%
TCGGGAACTGGCCATTTCGT+TGG - chr6_2:81635620-81635639 None:intergenic 55.0%
TGCGGCGAGTGAGAGGAAGA+TGG - chr6_2:81633368-81633387 None:intergenic 60.0%
CAGTGAATGCGGCGAGTGAG+AGG - chr6_2:81633375-81633394 None:intergenic 60.0%
CTCGTGCCAAGGTTAGGCAG+CGG + chr6_2:81634043-81634062 Msa0931730:intron 60.0%
CCACCGAAATTTGCACCGGG+GGG - chr6_2:81634741-81634760 None:intergenic 60.0%
CCGCAAGTAGACGGTGGGAT+TGG + chr6_2:81634803-81634822 Msa0931730:intron 60.0%
ATGCTTACCTCTCGGGGCCA+AGG - chr6_2:81635214-81635233 None:intergenic 60.0%
CCCCCCGGTGCAAATTTCGG+TGG + chr6_2:81634738-81634757 Msa0931730:intron 65.0%
GGCTCCCGCAAGTAGACGGT+GGG + chr6_2:81634798-81634817 Msa0931730:intron 65.0%
GACGGTGGGATTGGACCCCT+TGG + chr6_2:81634812-81634831 Msa0931730:intron 65.0%
CTTTAGGCCTTGGCCCCGAG+AGG + chr6_2:81635204-81635223 Msa0931730:CDS 65.0%
GGGCTCCCGCAAGTAGACGG+TGG + chr6_2:81634797-81634816 Msa0931730:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 81633197 81636295 81633197 ID=Msa0931730;Name=Msa0931730
chr6_2 mRNA 81633197 81636295 81633197 ID=Msa0931730-mRNA-1;Parent=Msa0931730;Name=Msa0931730-mRNA-1;_AED=0.18;_eAED=0.18;_QI=70|1|1|1|1|1|7|340|298
chr6_2 exon 81633197 81633438 81633197 ID=Msa0931730-mRNA-1:exon:14403;Parent=Msa0931730-mRNA-1
chr6_2 exon 81633613 81633770 81633613 ID=Msa0931730-mRNA-1:exon:14404;Parent=Msa0931730-mRNA-1
chr6_2 exon 81633934 81634053 81633934 ID=Msa0931730-mRNA-1:exon:14405;Parent=Msa0931730-mRNA-1
chr6_2 exon 81634143 81634242 81634143 ID=Msa0931730-mRNA-1:exon:14406;Parent=Msa0931730-mRNA-1
chr6_2 exon 81634926 81635065 81634926 ID=Msa0931730-mRNA-1:exon:14407;Parent=Msa0931730-mRNA-1
chr6_2 exon 81635146 81635225 81635146 ID=Msa0931730-mRNA-1:exon:14408;Parent=Msa0931730-mRNA-1
chr6_2 exon 81635829 81636295 81635829 ID=Msa0931730-mRNA-1:exon:14409;Parent=Msa0931730-mRNA-1
chr6_2 five_prime_UTR 81633197 81633266 81633197 ID=Msa0931730-mRNA-1:five_prime_utr;Parent=Msa0931730-mRNA-1
chr6_2 CDS 81633267 81633438 81633267 ID=Msa0931730-mRNA-1:cds;Parent=Msa0931730-mRNA-1
chr6_2 CDS 81633613 81633770 81633613 ID=Msa0931730-mRNA-1:cds;Parent=Msa0931730-mRNA-1
chr6_2 CDS 81633934 81634053 81633934 ID=Msa0931730-mRNA-1:cds;Parent=Msa0931730-mRNA-1
chr6_2 CDS 81634143 81634242 81634143 ID=Msa0931730-mRNA-1:cds;Parent=Msa0931730-mRNA-1
chr6_2 CDS 81634926 81635065 81634926 ID=Msa0931730-mRNA-1:cds;Parent=Msa0931730-mRNA-1
chr6_2 CDS 81635146 81635225 81635146 ID=Msa0931730-mRNA-1:cds;Parent=Msa0931730-mRNA-1
chr6_2 CDS 81635829 81635955 81635829 ID=Msa0931730-mRNA-1:cds;Parent=Msa0931730-mRNA-1
chr6_2 three_prime_UTR 81635956 81636295 81635956 ID=Msa0931730-mRNA-1:three_prime_utr;Parent=Msa0931730-mRNA-1
Gene Sequence

>Msa0931730

ATGGCAGGGGCTGTTGTGTTTTTGAACACCACTTTGTTGTGCTCACAACCATCACCATGTCTGACTATTTCCCGCTCCTCCTTCGCTTCTTCTCAGCTCCATCTTCCTCTCACTCGCCGCATTCACTGCTCAACTTCTACTTCTACTTCTACTTCATACCCTGCTGCCATAGACAAACTTCCAAATAGTATTGATTTTTCTGTAACTGGTGGTGCATATGATTTCACAAAAGCAACAACATCACTAACCAATGAGTTAATCACTTCATCAAAGAAAGTCACTCTTTTAAGGCATGGTCTTAGCACTTGGAATGCTGAAAGTAGAATTCAGGGAAGCTCAGATTTGTCAGTACTAACTGAGGCTGGGGTGGAGCAAGCAGAGAGATGCAAGAAAGCATTGGAAAATATTCACTTTGACCAATGTCTTGCCAGTCCAATATCTCGTGCCAAGCAAACTGCTGAAATTATATGGCAAGGAAGAGAAAAACCATTGGTTTACACTGATTCACTTAAAGAAATATCTCTCTATCACCTTGAAGGATTGAAAAATGTGGATGCTAAGCAAATATATAAGGAGGAATACAGAATCTGGAGAGAAGATCCAGCCAATTTTGTCATGAATGGTAGATATCCTGTACAAGATCTCTGGATAGCTGCAAGAGATTGTTGGAAGGAAATTTTGTTGTCACCTGGAGAAAGCTTTCTAGTTGTGACTCACAAATCAATATTGAGGGCATTAACTTGCACTGCTTTAGGCCTTGGCCCCGAGAGGTTTCGTTCCCTTGATATCAACAACGGTGGGATATGCGTATTCAACTTCAACACCAGAGGAGAAGCAATGCTCGAAGCTTTAAACTTGACAGCTCACATGTATAGCGATCATGTATATCCTGCCTGA

Protein sequence

>Msa0931730

MAGAVVFLNTTLLCSQPSPCLTISRSSFASSQLHLPLTRRIHCSTSTSTSTSYPAAIDKLPNSIDFSVTGGAYDFTKATTSLTNELITSSKKVTLLRHGLSTWNAESRIQGSSDLSVLTEAGVEQAERCKKALENIHFDQCLASPISRAKQTAEIIWQGREKPLVYTDSLKEISLYHLEGLKNVDAKQIYKEEYRIWREDPANFVMNGRYPVQDLWIAARDCWKEILLSPGESFLVVTHKSILRALTCTALGLGPERFRSLDINNGGICVFNFNTRGEAMLEALNLTAHMYSDHVYPA*