AlfalfaGEDB | Msa0177490

M. sativa cultivar zhongmu-4 / Msa0177490

KEGG: K02717
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840
PFAM: PF13424.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0177490	XP_013469505.1	95.224	335	15	1	1	335	3	336	0.0	608

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0177490	sp\|B9DHG0\|PYG7_ARATH	59.223	309	114	5	30	335	2	301	1.28e-107	319

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0177490	A0A072VQ51	95.224	335	15	1	1	335	3	336	0.0	608

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0177490	0.887269	1.654825e-72	-8.615850e-47
Msa0000500	Msa0177490	0.822248	2.621971e-53	-8.615850e-47
Msa0000780	Msa0177490	0.857020	2.168243e-62	-8.615850e-47
Msa0001420	Msa0177490	0.823303	1.489570e-53	-8.615850e-47
Msa0001460	Msa0177490	0.905307	4.930353e-80	-8.615850e-47
Msa0001510	Msa0177490	0.805238	1.469777e-49	-8.615850e-47
Msa0001540	Msa0177490	0.860381	2.148797e-63	-8.615850e-47
Msa0002060	Msa0177490	0.812917	3.330784e-51	-8.615850e-47
Msa0003470	Msa0177490	0.809309	2.016249e-50	-8.615850e-47
Msa0004350	Msa0177490	0.812439	4.237166e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0177490	MtrunA17_Chr1g0200431	95.224	335	15	1	1	335	3	336	0.0	608

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0177490	AT1G22700.1	59.223	309	114	5	30	335	2	301	1.30e-108	319
Msa0177490	AT1G22700.2	59.740	308	109	5	30	335	2	296	2.63e-108	318
Msa0177490	AT1G22700.3	78.894	199	42	0	130	328	6	204	3.64e-104	304

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Find 124 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGGCTGGGAACGGT+TGG	0.509872	1_4:-64492758	Msa0177490:three_prime_UTR
AAAATGGGTTACAAAAGCCG+TGG	0.683895	1_4:-64492708	Msa0177490:three_prime_UTR
AAAGAGAAGGAGAAGAGTAA+GGG	0.517442	1_4:+64496201	None:intergenic
AAAGCTGTGAATATTCAACC+AGG	0.675945	1_4:-64493185	Msa0177490:CDS
AAAGTCATCCAAATGGGTTT+CGG	0.484180	1_4:-64494486	Msa0177490:CDS
AAATGAGATGTATCAGGTCG+GGG	0.569807	1_4:-64494393	Msa0177490:CDS
AACACATACACACACCTTGC+CGG	0.398910	1_4:-64496324	Msa0177490:five_prime_UTR
AACCAGGCTATGTCACAGCA+TGG	0.630192	1_4:-64493169	Msa0177490:CDS
AACTTGGTGCAGTGATGTTG+CGG	0.566153	1_4:-64493800	Msa0177490:CDS
AAGGTGTTACTGTCAGATAT+AGG	0.419915	1_4:-64493004	Msa0177490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGACAGGAAAAAGAACA+GGG	+	chr1_4:64492612-64492631	None:intergenic	30.0%
AATTAGACAGGAAAAAGAAC+AGG	+	chr1_4:64492613-64492632	None:intergenic	30.0%
TGTTTGTTCCTAAATTAGAC+AGG	+	chr1_4:64492625-64492644	None:intergenic	30.0%
TAGAATTACTTGAATGAGCA+TGG	+	chr1_4:64492798-64492817	None:intergenic	30.0%
AAACACATGCAAATTGGAAA+AGG	+	chr1_4:64492969-64492988	None:intergenic	30.0%
TTACAGAAAGATTAAAGCCT+TGG	-	chr1_4:64493152-64493171	Msa0177490:CDS	30.0%
TACAGAAAGATTAAAGCCTT+GGG	-	chr1_4:64493153-64493172	Msa0177490:CDS	30.0%
AAATTAGTAGCCAGAAATCA+AGG	+	chr1_4:64493527-64493546	None:intergenic	30.0%
TATAAAGAAAAGTGATCACG+AGG	-	chr1_4:64493898-64493917	Msa0177490:intron	30.0%
TACTAGGTTAATCACATAAG+TGG	-	chr1_4:64493983-64494002	Msa0177490:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	64492526	64496401	64492526	ID=Msa0177490;Name=Msa0177490
chr1_4	mRNA	64492526	64496401	64492526	ID=Msa0177490-mRNA-1;Parent=Msa0177490;Name=Msa0177490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=140\|1\|1\|1\|0.6\|0.83\|6\|466\|335
chr1_4	exon	64492526	64493276	64492526	ID=Msa0177490-mRNA-1:exon:20974;Parent=Msa0177490-mRNA-1
chr1_4	exon	64493719	64493865	64493719	ID=Msa0177490-mRNA-1:exon:20973;Parent=Msa0177490-mRNA-1
chr1_4	exon	64494262	64494545	64494262	ID=Msa0177490-mRNA-1:exon:20972;Parent=Msa0177490-mRNA-1
chr1_4	exon	64495285	64495345	64495285	ID=Msa0177490-mRNA-1:exon:20971;Parent=Msa0177490-mRNA-1
chr1_4	exon	64495682	64495769	64495682	ID=Msa0177490-mRNA-1:exon:20970;Parent=Msa0177490-mRNA-1
chr1_4	exon	64496119	64496401	64496119	ID=Msa0177490-mRNA-1:exon:20969;Parent=Msa0177490-mRNA-1
chr1_4	five_prime_UTR	64496262	64496401	64496262	ID=Msa0177490-mRNA-1:five_prime_utr;Parent=Msa0177490-mRNA-1
chr1_4	CDS	64496119	64496261	64496119	ID=Msa0177490-mRNA-1:cds;Parent=Msa0177490-mRNA-1
chr1_4	CDS	64495682	64495769	64495682	ID=Msa0177490-mRNA-1:cds;Parent=Msa0177490-mRNA-1
chr1_4	CDS	64495285	64495345	64495285	ID=Msa0177490-mRNA-1:cds;Parent=Msa0177490-mRNA-1
chr1_4	CDS	64494262	64494545	64494262	ID=Msa0177490-mRNA-1:cds;Parent=Msa0177490-mRNA-1
chr1_4	CDS	64493719	64493865	64493719	ID=Msa0177490-mRNA-1:cds;Parent=Msa0177490-mRNA-1
chr1_4	CDS	64492992	64493276	64492992	ID=Msa0177490-mRNA-1:cds;Parent=Msa0177490-mRNA-1
chr1_4	three_prime_UTR	64492526	64492991	64492526	ID=Msa0177490-mRNA-1:three_prime_utr;Parent=Msa0177490-mRNA-1

Gene Sequence

>Msa0177490

ATGAAGATGAGTGGTTCTACTTCCACTTTCACTCATTTCCCTTACTCTTCTCCTTCTCTTTCCTCTATCTTCCCTTCCAAATCCACTTTTCAATCTACCCTTACCTCTTCTAAACTCACCACTTCATCACCATGCTCATTCAAAAAGATTAAAGCCTTGGGAATTCAGCAAACAGGGTCCACTCCACATGGAGACAACCTTGATACAGTCAAGAGTAGGATTCTACTCCAGATGTTTCAAAGGACAATGCCAATGGAACCCCTTATAACCATTTTCACAAAACAATCCGAGAGGAATGACTTTACAGTGGAAAATCTTCAAGATTGGAGAAAGTCATCCAAATGGGTTTCGGCATTCTTGTTTGCACAAACTATATCAGTTATTTCTCCTGATGTTTCATATGCAAGTGACTCGGTGAAGATAAATGAGATGTATCAGGTCGGGGAGTTGTTTGACTTAGGAATCCAACTAATATACTTGCTACTGCTGTTGGGTTTGCTCGGGGCTGGGACTTACTACGTGATTCGCCAAGTTCTTGTCCGCAGAGAGCTTGACCTTTCTGCTAAAGAGTTGCAAGAGCAAGTCAGAAGCGGTGATGCAAGTGCGACTGAGCTGTTTGAACTTGGTGCAGTGATGTTGCGGAGGAAATTTTACCCAGCTGCTACCAAGTTCTTGCTTCAAGCTATTGAGAAATGGGATGGAGAAAGTCAGGATCTTGCACAGGTTTACAACGCTCTTGGTGTCAGTTATGTTCGCGATGGGAAGCTTGAAAAAGGAATTGCTAAATTTGAGAAAGCTGTGAATATTCAACCAGGCTATGTCACAGCATGGAACAATCTTGGTGATGCATATGAAAGTAAAAAAGAATATCCGTCTGCACTGAAGGCATTTGAAGAAGTGCTTCTATTTGATCCTAACAACAAGATTGCACGGCCCAGGAGAGATTCTTTGAAGGAACTTGTTGGAATGACGAAAGGTGTTACTGTCAGATATAGGGAGAAGAAATGA

Protein sequence

>Msa0177490

MKMSGSTSTFTHFPYSSPSLSSIFPSKSTFQSTLTSSKLTTSSPCSFKKIKALGIQQTGSTPHGDNLDTVKSRILLQMFQRTMPMEPLITIFTKQSERNDFTVENLQDWRKSSKWVSAFLFAQTISVISPDVSYASDSVKINEMYQVGELFDLGIQLIYLLLLLGLLGAGTYYVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVMLRRKFYPAATKFLLQAIEKWDGESQDLAQVYNALGVSYVRDGKLEKGIAKFEKAVNIQPGYVTAWNNLGDAYESKKEYPSALKAFEEVLLFDPNNKIARPRRDSLKELVGMTKGVTVRYREKK*