AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000220 MtrunA17_Chr3g0095661 98.734 395 5 0 1 395 1 395 0.0 810
Msa0000220 MtrunA17_Chr5g0442671 79.648 398 68 4 1 395 1 388 0.0 648
Msa0000220 MtrunA17_Chr5g0433601 73.669 357 85 2 37 388 77 429 0.0 540
Msa0000220 MtrunA17_Chr3g0121311 69.395 281 86 0 98 378 87 367 7.10e-153 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000220 AT5G17230.2 76.136 352 79 2 29 378 59 407 0.0 551
Msa0000220 AT5G17230.1 76.136 352 79 2 29 378 59 407 0.0 551
Msa0000220 AT5G17230.4 76.136 352 79 2 29 378 59 407 0.0 551
Msa0000220 AT5G17230.3 73.025 367 79 3 29 378 59 422 0.0 542

Find 95 sgRNAs with CRISPR-Local

Find 518 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGTCTGGTGTTCTTCTT+TGG 0.203427 1_1:-1249064 Msa0000220:CDS
TGTTCATCTTGTAGTCATTT+TGG 0.206973 1_1:+1245434 None:intergenic
CCTTCAATCATGTCTTTAAA+TGG 0.223849 1_1:+1246315 None:intergenic
AGAGAATGCCATTTCCTTAA+TGG 0.264096 1_1:-1249024 Msa0000220:CDS
CTAATTAGACATACCGTAAA+TGG 0.264788 1_1:+1247855 None:intergenic
GAGAATGCCATTTCCTTAAT+GGG 0.302605 1_1:-1249023 Msa0000220:CDS
CAGCAAGTAGATGGCCTGTT+TGG 0.307680 1_1:-1245608 Msa0000220:CDS
GTGAGGCAATTAAATGGTTT+AGG 0.310639 1_1:+1249191 None:intergenic
TTATCACTTCCTGTTGCTCT+TGG 0.315689 1_1:-1245486 Msa0000220:CDS
TTCAAAAGCATTGAATAGTT+TGG 0.322489 1_1:-1245402 Msa0000220:three_prime_UTR
GATGCTCTCTGTTGAAGCTT+TGG 0.337629 1_1:+1246170 None:intergenic
CTTATGAGTGTTCCTGTAAT+GGG 0.347887 1_1:-1246207 Msa0000220:CDS
GCCATTTCCTTAATGGGTCT+TGG 0.351168 1_1:-1249017 Msa0000220:CDS
TGTGGTTCTATCCCCATTAC+AGG 0.351831 1_1:+1246195 None:intergenic
AGGAGGTTTAGACATTGTTC+TGG 0.362139 1_1:-1248972 Msa0000220:CDS
TCCCATCTGTCCAAGGCCTT+TGG 0.363807 1_1:+1247687 None:intergenic
CATGAAATTGCGCCATTTGT+CGG 0.363909 1_1:+1245698 None:intergenic
AGAAGAACACCAGACATCTT+AGG 0.368071 1_1:+1249068 None:intergenic
GGGCATCTTTGCTGTTGTAT+AGG 0.372606 1_1:-1245587 Msa0000220:CDS
CTATATTGCTACTATGTTGC+TGG 0.386898 1_1:-1246240 Msa0000220:CDS
GATGTCTGGTGTTCTTCTTT+GGG 0.389571 1_1:-1249063 Msa0000220:CDS
CAGCAACATAGTAGCAATAT+AGG 0.392016 1_1:+1246241 None:intergenic
AGCAAGTAGATGGCCTGTTT+GGG 0.395898 1_1:-1245607 Msa0000220:CDS
TAACCTACCTGTATATCAAC+AGG 0.395934 1_1:+1247585 None:intergenic
AAAGCCATATGGGCCATTTA+CGG 0.401396 1_1:-1247868 Msa0000220:intron
CTCTCCTCTGAGGATCTTGT+AGG 0.415075 1_1:+1248912 None:intergenic
GCTCTTGGAATAGCAACGTT+TGG 0.415641 1_1:-1245471 Msa0000220:CDS
TTGGTGAAATCACCTTCAAT+AGG 0.419066 1_1:+1248801 None:intergenic
TCCAAGACCCATTAAGGAAA+TGG 0.420248 1_1:+1249016 None:intergenic
GAAATATTATTCTAAATTTG+AGG 0.423196 1_1:+1249213 None:intergenic
AGCTCAGTTCAGCAAGTAGA+TGG 0.427080 1_1:-1245617 Msa0000220:CDS
GTACCTTCCGCAAGATGAAT+TGG 0.429606 1_1:-1245766 Msa0000220:CDS
TGTTCTATTCCTAAGATGTC+TGG 0.436560 1_1:-1249077 Msa0000220:exon
CCTTATGAGTGTTCCTGTAA+TGG 0.441118 1_1:-1246208 Msa0000220:CDS
TACTATGTTGCTGGGACTGT+GGG 0.445506 1_1:-1246231 Msa0000220:CDS
ACTATAATAACTTCACCAAA+CGG 0.449049 1_1:-1245536 Msa0000220:CDS
CATACCGTAAATGGCCCATA+TGG 0.458649 1_1:+1247864 None:intergenic
AAAGTACCCTGTTGATATAC+AGG 0.460407 1_1:-1247592 Msa0000220:intron
GTTCTTCTTTGGGTGAATTG+TGG 0.464290 1_1:-1249053 Msa0000220:CDS
GGTGTGATGTGTGAAGCATT+AGG 0.465088 1_1:+1247708 None:intergenic
AAGAGAGAAGAAAAGCCATA+TGG 0.465862 1_1:-1247879 Msa0000220:CDS
GTTGCTATTCCAAGAGCAAC+AGG 0.466089 1_1:+1245477 None:intergenic
TATTGTGTGTTTCCGAGATA+CGG 0.468415 1_1:-1245247 Msa0000220:three_prime_UTR
AACAGCAAAGATGCCCAAAC+AGG 0.470763 1_1:+1245594 None:intergenic
ACACATCACACCAAAGGCCT+TGG 0.473491 1_1:-1247697 Msa0000220:CDS
CTATAATAACTTCACCAAAC+GGG 0.476146 1_1:-1245535 Msa0000220:CDS
TTGGATGATAAGCCTATTGA+AGG 0.477265 1_1:-1248813 Msa0000220:CDS
TACAATGCTGCATTGGCACT+TGG 0.478711 1_1:-1246147 Msa0000220:CDS
CACCAAAGGCCTTGGACAGA+TGG 0.481447 1_1:-1247689 Msa0000220:CDS
CCATTTAAAGACATGATTGA+AGG 0.482461 1_1:-1246315 Msa0000220:CDS
CTACTATGTTGCTGGGACTG+TGG 0.486893 1_1:-1246232 Msa0000220:CDS
TATATTGCTACTATGTTGCT+GGG 0.488882 1_1:-1246239 Msa0000220:CDS
GCAGCATCATACATATCATA+AGG 0.497935 1_1:+1247633 None:intergenic
TCTGTTGAAGCTTTGGATTG+TGG 0.503008 1_1:+1246177 None:intergenic
AAAACACACTTTCCGTATCT+CGG 0.503216 1_1:+1245235 None:intergenic
TTGAAGGTGATTTCACCAAT+GGG 0.504638 1_1:-1248797 Msa0000220:CDS
ATTTCCTTAATGGGTCTTGG+AGG 0.509366 1_1:-1249014 Msa0000220:CDS
CAGAAGAACAGATGAGTTAG+TGG 0.511011 1_1:-1247736 Msa0000220:CDS
CCATTACAGGAACACTCATA+AGG 0.511875 1_1:+1246208 None:intergenic
CAAGATGAATTGGCACAAGC+TGG 0.511937 1_1:-1245756 Msa0000220:CDS
AAGACATGATTGAAGGGATG+AGG 0.513888 1_1:-1246308 Msa0000220:CDS
ATTGAAGGTGATTTCACCAA+TGG 0.516585 1_1:-1248798 Msa0000220:CDS
CATGATTGAAGGGATGAGGC+TGG 0.519563 1_1:-1246304 Msa0000220:CDS
TCTTTGTTCCCATCTGTCCA+AGG 0.520607 1_1:+1247680 None:intergenic
GAGGCAGAGTAACCGACAAA+TGG 0.531514 1_1:-1245710 Msa0000220:CDS
CTTCAACATTACTAAACTTG+AGG 0.532257 1_1:+1245288 None:intergenic
ACCAAAGGCCTTGGACAGAT+GGG 0.533995 1_1:-1247688 Msa0000220:CDS
CATTTAAAGACATGATTGAA+GGG 0.534248 1_1:-1246314 Msa0000220:CDS
TTCACCAAACGGGCTTATGT+AGG 0.535111 1_1:-1245525 Msa0000220:CDS
AGAGAGAAGAAAAGCCATAT+GGG 0.536115 1_1:-1247878 Msa0000220:CDS
TACAAGATCCTCAGAGGAGA+GGG 0.538242 1_1:-1248910 Msa0000220:CDS
GAGCATCTACAATGCTGCAT+TGG 0.547623 1_1:-1246154 Msa0000220:CDS
TAGTTTCCTAGAAATCAGAA+TGG 0.573289 1_1:-1245363 Msa0000220:three_prime_UTR
CAAATGGCGCAATTTCATGA+AGG 0.578152 1_1:-1245694 Msa0000220:CDS
GTGCCAATTCATCTTGCGGA+AGG 0.588837 1_1:+1245763 None:intergenic
TCCAACGTCTCTAAGTATGT+TGG 0.590935 1_1:+1246107 None:intergenic
AGAACTCAAAAGTTCCCCAT+TGG 0.594991 1_1:+1248782 None:intergenic
GCTTGTGCCAATTCATCTTG+CGG 0.595244 1_1:+1245759 None:intergenic
AGGGTCAAATAAAGAGAGCA+AGG 0.603555 1_1:-1245674 Msa0000220:CDS
ACCAACATACTTAGAGACGT+TGG 0.613097 1_1:-1246108 Msa0000220:CDS
AGAACAGATGAGTTAGTGGA+TGG 0.619649 1_1:-1247732 Msa0000220:CDS
AAATGGCGCAATTTCATGAA+GGG 0.620886 1_1:-1245693 Msa0000220:CDS
AGAGGAGAGGGTGTATGAAG+TGG 0.622701 1_1:-1248898 Msa0000220:CDS
GAAAAGATGTAAGAACTCAA+AGG 0.626190 1_1:-1248992 Msa0000220:CDS
TTATGAGTGTTCCTGTAATG+GGG 0.627271 1_1:-1246206 Msa0000220:CDS
TGCTTCACACATCACACCAA+AGG 0.631660 1_1:-1247703 Msa0000220:CDS
AGTTCTGCTTATGATAGATG+TGG 0.632966 1_1:-1248765 Msa0000220:CDS
GAAGCAAGCAGCCCTAGTGA+AGG 0.638244 1_1:-1248871 Msa0000220:CDS
CTACAAGATCCTCAGAGGAG+AGG 0.648794 1_1:-1248911 Msa0000220:CDS
TCGTCTTATAGTGCTAGAAG+AGG 0.652452 1_1:-1245795 Msa0000220:intron
TTCATACACCCTCTCCTCTG+AGG 0.670132 1_1:+1248902 None:intergenic
AAGATGTAAGAACTCAAAGG+AGG 0.687423 1_1:-1248989 Msa0000220:CDS
TGAAGGTGATTTCACCAATG+GGG 0.696835 1_1:-1248796 Msa0000220:CDS
AACCTACCTGTATATCAACA+GGG 0.701397 1_1:+1247586 None:intergenic
TGAACCTACAAGATCCTCAG+AGG 0.724557 1_1:-1248916 Msa0000220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAACCATATTTATTA+TGG - chr1_1:1248578-1248597 Msa0000220:intron 10.0%
!! ATATTTAACCATATTTATTA+TGG - chr1_1:1248578-1248597 Msa0000220:intron 10.0%
!! GAAATATTATTCTAAATTTG+AGG + chr1_1:1245263-1245282 None:intergenic 15.0%
!!! TTGATAACATGAATATTTTT+TGG - chr1_1:1245819-1245838 Msa0000220:intron 15.0%
!!! TTATAATTTTGTCAAAATCA+CGG + chr1_1:1246278-1246297 None:intergenic 15.0%
!!! TATAATTTTTGAAGGTATAA+AGG + chr1_1:1246956-1246975 None:intergenic 15.0%
!!! ATTTAGCATTATTTTTGTTT+TGG + chr1_1:1247538-1247557 None:intergenic 15.0%
!!! ATTTATGTATATGTATTTTG+TGG + chr1_1:1247607-1247626 None:intergenic 15.0%
!!! ATTTCGTTATTTTTTGAAAA+GGG + chr1_1:1247794-1247813 None:intergenic 15.0%
!! GAAATATTATTCTAAATTTG+AGG + chr1_1:1245263-1245282 None:intergenic 15.0%
!!! TTGATAACATGAATATTTTT+TGG - chr1_1:1245819-1245838 Msa0000220:intron 15.0%
!!! TTATAATTTTGTCAAAATCA+CGG + chr1_1:1246278-1246297 None:intergenic 15.0%
!!! TATAATTTTTGAAGGTATAA+AGG + chr1_1:1246956-1246975 None:intergenic 15.0%
!!! ATTTAGCATTATTTTTGTTT+TGG + chr1_1:1247538-1247557 None:intergenic 15.0%
!!! ATTTATGTATATGTATTTTG+TGG + chr1_1:1247607-1247626 None:intergenic 15.0%
!!! ATTTCGTTATTTTTTGAAAA+GGG + chr1_1:1247794-1247813 None:intergenic 15.0%
!! TAGAGAAAAATATGAATGAA+AGG + chr1_1:1245235-1245254 None:intergenic 20.0%
!! AGAAAAGATATTAAAAAGAG+AGG - chr1_1:1245630-1245649 Msa0000220:CDS 20.0%
!!! TATGCAAAGACATTTTATTT+AGG - chr1_1:1245747-1245766 Msa0000220:CDS 20.0%
!! AATTTAGACGATATATCATA+GGG - chr1_1:1245980-1245999 Msa0000220:intron 20.0%
!!! TTTGAAGTTTTGATCAATAA+AGG + chr1_1:1246550-1246569 None:intergenic 20.0%
!! AAATTTCACATTTCAACTTT+GGG + chr1_1:1246931-1246950 None:intergenic 20.0%
!! TAAATTTCACATTTCAACTT+TGG + chr1_1:1246932-1246951 None:intergenic 20.0%
!! GAATATGTTTGCTTAAAATT+AGG - chr1_1:1247026-1247045 Msa0000220:intron 20.0%
!! ACCATCTTAAAATTTGTATT+TGG + chr1_1:1247242-1247261 None:intergenic 20.0%
!!! GATTTCGTTATTTTTTGAAA+AGG + chr1_1:1247795-1247814 None:intergenic 20.0%
!! ATAAATATGACTTGAAAATG+TGG - chr1_1:1247981-1248000 Msa0000220:intron 20.0%
!!! ATAGAAGGTACTTAATTTTA+AGG - chr1_1:1248090-1248109 Msa0000220:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr1_1:1248546-1248565 Msa0000220:intron 20.0%
!! TAGAGAAAAATATGAATGAA+AGG + chr1_1:1245235-1245254 None:intergenic 20.0%
!! AGAAAAGATATTAAAAAGAG+AGG - chr1_1:1245630-1245649 Msa0000220:CDS 20.0%
!!! TATGCAAAGACATTTTATTT+AGG - chr1_1:1245747-1245766 Msa0000220:CDS 20.0%
!! AATTTAGACGATATATCATA+GGG - chr1_1:1245980-1245999 Msa0000220:intron 20.0%
!!! TTTGAAGTTTTGATCAATAA+AGG + chr1_1:1246550-1246569 None:intergenic 20.0%
!! AAATTTCACATTTCAACTTT+GGG + chr1_1:1246931-1246950 None:intergenic 20.0%
!! TAAATTTCACATTTCAACTT+TGG + chr1_1:1246932-1246951 None:intergenic 20.0%
!! GAATATGTTTGCTTAAAATT+AGG - chr1_1:1247026-1247045 Msa0000220:intron 20.0%
!! ACCATCTTAAAATTTGTATT+TGG + chr1_1:1247242-1247261 None:intergenic 20.0%
!!! GATTTCGTTATTTTTTGAAA+AGG + chr1_1:1247795-1247814 None:intergenic 20.0%
!! ATAAATATGACTTGAAAATG+TGG - chr1_1:1247981-1248000 Msa0000220:intron 20.0%
!!! ATAGAAGGTACTTAATTTTA+AGG - chr1_1:1248090-1248109 Msa0000220:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr1_1:1248546-1248565 Msa0000220:intron 20.0%
!!! TGTAAAAGTACATCATTTTG+AGG + chr1_1:1245208-1245227 None:intergenic 25.0%
!!! TTTTTTGTGAGGCAATTAAA+TGG + chr1_1:1245291-1245310 None:intergenic 25.0%
!!! AAAAACTGTACTTTTTTGTG+AGG + chr1_1:1245302-1245321 None:intergenic 25.0%
! TAAAAAGAGAGGTTTGAATT+TGG - chr1_1:1245641-1245660 Msa0000220:CDS 25.0%
!! GCGAAAAATCTAAAACAAAA+GGG + chr1_1:1245785-1245804 None:intergenic 25.0%
!! TGCGAAAAATCTAAAACAAA+AGG + chr1_1:1245786-1245805 None:intergenic 25.0%
! GAATTTAGACGATATATCAT+AGG - chr1_1:1245979-1245998 Msa0000220:intron 25.0%
! ATGCTAATTAATAGTTCAGT+CGG + chr1_1:1246098-1246117 None:intergenic 25.0%
!! AAGACATCGTAAACTATTTT+TGG + chr1_1:1246152-1246171 None:intergenic 25.0%
! TTTGCGAATATGTTACATAA+CGG - chr1_1:1246332-1246351 Msa0000220:intron 25.0%
!!! ATATGTTACATAACGGATTT+AGG - chr1_1:1246339-1246358 Msa0000220:intron 25.0%
!!! TATGTTACATAACGGATTTA+GGG - chr1_1:1246340-1246359 Msa0000220:intron 25.0%
! ATATTGTAAGTTTGAATTGG+CGG + chr1_1:1246465-1246484 None:intergenic 25.0%
! CTTCAAAATTTCTGTTACAA+AGG - chr1_1:1246646-1246665 Msa0000220:intron 25.0%
! CTGTAATAATACATAAAGAG+TGG + chr1_1:1246710-1246729 None:intergenic 25.0%
! CTTTATGTATTATTACAGTG+TGG - chr1_1:1246712-1246731 Msa0000220:intron 25.0%
!!! AGATTAACTGATGTTTTTGA+AGG - chr1_1:1246813-1246832 Msa0000220:intron 25.0%
!! CAACTAGCTATAATTTTTGA+AGG + chr1_1:1246964-1246983 None:intergenic 25.0%
!! AAATTGATTTCATCTCTCTA+AGG - chr1_1:1247051-1247070 Msa0000220:intron 25.0%
!!! GCCAAATACAAATTTTAAGA+TGG - chr1_1:1247238-1247257 Msa0000220:intron 25.0%
!! AGAGACTATCTAAAATTTGA+TGG - chr1_1:1247265-1247284 Msa0000220:intron 25.0%
!! GAGACTATCTAAAATTTGAT+GGG - chr1_1:1247266-1247285 Msa0000220:intron 25.0%
! GTAATCAAGGTTATCAAAAT+CGG - chr1_1:1247362-1247381 Msa0000220:intron 25.0%
! TAATCAAGGTTATCAAAATC+GGG - chr1_1:1247363-1247382 Msa0000220:intron 25.0%
! AAATGAACATGTAACTAGTT+AGG - chr1_1:1247623-1247642 Msa0000220:CDS 25.0%
!! AGTGAAAGAATGAAATGTTT+TGG - chr1_1:1247698-1247717 Msa0000220:CDS 25.0%
!! TTGTCATTTAAGCAAATAGA+AGG - chr1_1:1248075-1248094 Msa0000220:intron 25.0%
! CATTTAAAGACATGATTGAA+GGG - chr1_1:1248159-1248178 Msa0000220:intron 25.0%
!! TATTGTATCTTGATTTTCTC+AGG + chr1_1:1248196-1248215 None:intergenic 25.0%
! CATTAATTAGAAATCGAACT+CGG - chr1_1:1248445-1248464 Msa0000220:intron 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG - chr1_1:1248545-1248564 Msa0000220:intron 25.0%
! ACCATATTTATTATGGATGA+TGG - chr1_1:1248585-1248604 Msa0000220:intron 25.0%
!!! CTAATTTTTTCTTGTTTCCA+TGG - chr1_1:1248655-1248674 Msa0000220:intron 25.0%
! ACTATAATAACTTCACCAAA+CGG - chr1_1:1248937-1248956 Msa0000220:CDS 25.0%
!!! TCATTTTGGTTAACTTTTGT+GGG + chr1_1:1249028-1249047 None:intergenic 25.0%
!!! TTCAAAAGCATTGAATAGTT+TGG - chr1_1:1249071-1249090 Msa0000220:exon 25.0%
!! TTTTTACCATTCTGATTTCT+AGG + chr1_1:1249119-1249138 None:intergenic 25.0%
!!! TGTAAAAGTACATCATTTTG+AGG + chr1_1:1245208-1245227 None:intergenic 25.0%
!!! TTTTTTGTGAGGCAATTAAA+TGG + chr1_1:1245291-1245310 None:intergenic 25.0%
!!! AAAAACTGTACTTTTTTGTG+AGG + chr1_1:1245302-1245321 None:intergenic 25.0%
! TAAAAAGAGAGGTTTGAATT+TGG - chr1_1:1245641-1245660 Msa0000220:CDS 25.0%
!! GCGAAAAATCTAAAACAAAA+GGG + chr1_1:1245785-1245804 None:intergenic 25.0%
!! TGCGAAAAATCTAAAACAAA+AGG + chr1_1:1245786-1245805 None:intergenic 25.0%
! GAATTTAGACGATATATCAT+AGG - chr1_1:1245979-1245998 Msa0000220:intron 25.0%
! ATGCTAATTAATAGTTCAGT+CGG + chr1_1:1246098-1246117 None:intergenic 25.0%
!! AAGACATCGTAAACTATTTT+TGG + chr1_1:1246152-1246171 None:intergenic 25.0%
! TTTGCGAATATGTTACATAA+CGG - chr1_1:1246332-1246351 Msa0000220:intron 25.0%
!!! ATATGTTACATAACGGATTT+AGG - chr1_1:1246339-1246358 Msa0000220:intron 25.0%
!!! TATGTTACATAACGGATTTA+GGG - chr1_1:1246340-1246359 Msa0000220:intron 25.0%
! ATATTGTAAGTTTGAATTGG+CGG + chr1_1:1246465-1246484 None:intergenic 25.0%
! CTTCAAAATTTCTGTTACAA+AGG - chr1_1:1246646-1246665 Msa0000220:intron 25.0%
! CTGTAATAATACATAAAGAG+TGG + chr1_1:1246710-1246729 None:intergenic 25.0%
! CTTTATGTATTATTACAGTG+TGG - chr1_1:1246712-1246731 Msa0000220:intron 25.0%
!!! AGATTAACTGATGTTTTTGA+AGG - chr1_1:1246813-1246832 Msa0000220:intron 25.0%
!! CAACTAGCTATAATTTTTGA+AGG + chr1_1:1246964-1246983 None:intergenic 25.0%
!! AAATTGATTTCATCTCTCTA+AGG - chr1_1:1247051-1247070 Msa0000220:intron 25.0%
!!! GCCAAATACAAATTTTAAGA+TGG - chr1_1:1247238-1247257 Msa0000220:intron 25.0%
!! AGAGACTATCTAAAATTTGA+TGG - chr1_1:1247265-1247284 Msa0000220:intron 25.0%
!! GAGACTATCTAAAATTTGAT+GGG - chr1_1:1247266-1247285 Msa0000220:intron 25.0%
! GTAATCAAGGTTATCAAAAT+CGG - chr1_1:1247362-1247381 Msa0000220:intron 25.0%
! TAATCAAGGTTATCAAAATC+GGG - chr1_1:1247363-1247382 Msa0000220:intron 25.0%
! AAATGAACATGTAACTAGTT+AGG - chr1_1:1247623-1247642 Msa0000220:CDS 25.0%
!! AGTGAAAGAATGAAATGTTT+TGG - chr1_1:1247698-1247717 Msa0000220:CDS 25.0%
!! TTGTCATTTAAGCAAATAGA+AGG - chr1_1:1248075-1248094 Msa0000220:intron 25.0%
! CATTTAAAGACATGATTGAA+GGG - chr1_1:1248159-1248178 Msa0000220:intron 25.0%
!! TATTGTATCTTGATTTTCTC+AGG + chr1_1:1248196-1248215 None:intergenic 25.0%
! CATTAATTAGAAATCGAACT+CGG - chr1_1:1248445-1248464 Msa0000220:intron 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG - chr1_1:1248545-1248564 Msa0000220:intron 25.0%
! ACCATATTTATTATGGATGA+TGG - chr1_1:1248585-1248604 Msa0000220:intron 25.0%
!!! CTAATTTTTTCTTGTTTCCA+TGG - chr1_1:1248655-1248674 Msa0000220:intron 25.0%
! ACTATAATAACTTCACCAAA+CGG - chr1_1:1248937-1248956 Msa0000220:CDS 25.0%
!!! TCATTTTGGTTAACTTTTGT+GGG + chr1_1:1249028-1249047 None:intergenic 25.0%
!!! TTCAAAAGCATTGAATAGTT+TGG - chr1_1:1249071-1249090 Msa0000220:exon 25.0%
!! TTTTTACCATTCTGATTTCT+AGG + chr1_1:1249119-1249138 None:intergenic 25.0%
GAAAAGATGTAAGAACTCAA+AGG - chr1_1:1245481-1245500 Msa0000220:CDS 30.0%
! TTTTCTTTGTTCCTTCACTA+GGG + chr1_1:1245616-1245635 None:intergenic 30.0%
! ATGTAAAGAAGCTTTAGTCA+TGG - chr1_1:1245874-1245893 Msa0000220:intron 30.0%
ATGAAATTTGAACCGATATG+TGG + chr1_1:1245920-1245939 None:intergenic 30.0%
! CATACTTTTATCTTGCCTTT+TGG - chr1_1:1245937-1245956 Msa0000220:intron 30.0%
! ATTTGAGTTCAAATCCTAAC+TGG - chr1_1:1246042-1246061 Msa0000220:intron 30.0%
TAATTAATAGTTCAGTCGGA+AGG + chr1_1:1246094-1246113 None:intergenic 30.0%
GACTGAACTATTAATTAGCA+TGG - chr1_1:1246097-1246116 Msa0000220:intron 30.0%
TCTCTATCGAACTACTTATA+TGG + chr1_1:1246241-1246260 None:intergenic 30.0%
! TTTAGAGCTTCAACAAAACA+CGG + chr1_1:1246391-1246410 None:intergenic 30.0%
GTAAGCTATTGTCAAAAACA+CGG - chr1_1:1246413-1246432 Msa0000220:intron 30.0%
GCCAATTCAAACTTACAATA+TGG - chr1_1:1246464-1246483 Msa0000220:intron 30.0%
GCCATATTGTAAGTTTGAAT+TGG + chr1_1:1246468-1246487 None:intergenic 30.0%
GATCAATAAAGGACGAATAA+AGG + chr1_1:1246539-1246558 None:intergenic 30.0%
TGATCAAAACTTCAAATCTC+AGG - chr1_1:1246554-1246573 Msa0000220:intron 30.0%
CTAATTAGACATACCGTAAA+TGG + chr1_1:1246621-1246640 None:intergenic 30.0%
CTTGTATGACACACATATAA+GGG - chr1_1:1247078-1247097 Msa0000220:intron 30.0%
TCTTAAAACGTGTCATAAGT+GGG - chr1_1:1247172-1247191 Msa0000220:intron 30.0%
AAAATCGCAATCAAAATCGA+AGG - chr1_1:1247429-1247448 Msa0000220:intron 30.0%
! AAATCGAAGGATTTTACTCA+AGG - chr1_1:1247442-1247461 Msa0000220:intron 30.0%
! GACTTTTGTAGAATCGATAT+AGG - chr1_1:1247464-1247483 Msa0000220:intron 30.0%
TAAAATCGCAATCAAAATCG+AGG - chr1_1:1247428-1247447 Msa0000220:intron 30.0%
GTATTTATAGAACTGGATCA+TGG - chr1_1:1247729-1247748 Msa0000220:CDS 30.0%
!!! AGGATTTTGATGGATTTTGA+AGG + chr1_1:1247817-1247836 None:intergenic 30.0%
!! ATAGGATTTTGCCTGTTTTT+GGG - chr1_1:1247865-1247884 Msa0000220:intron 30.0%
CCTTCAATCATGTCTTTAAA+TGG + chr1_1:1248161-1248180 None:intergenic 30.0%
CCATTTAAAGACATGATTGA+AGG - chr1_1:1248158-1248177 Msa0000220:intron 30.0%
TATATTGCTACTATGTTGCT+GGG - chr1_1:1248234-1248253 Msa0000220:intron 30.0%
AGACATGTGGTTATAATTAG+AGG - chr1_1:1248514-1248533 Msa0000220:intron 30.0%
GCCATCATCCATAATAAATA+TGG + chr1_1:1248589-1248608 None:intergenic 30.0%
!!! GTGAGTTTTGAAGAAAACAT+GGG + chr1_1:1248613-1248632 None:intergenic 30.0%
!!! TGTGAGTTTTGAAGAAAACA+TGG + chr1_1:1248614-1248633 None:intergenic 30.0%
GAAAAATGTCATCATCTGAT+AGG + chr1_1:1248743-1248762 None:intergenic 30.0%
CTATAATAACTTCACCAAAC+GGG - chr1_1:1248938-1248957 Msa0000220:CDS 30.0%
!!! GTCATTTTGGTTAACTTTTG+TGG + chr1_1:1249029-1249048 None:intergenic 30.0%
! TGTTCATCTTGTAGTCATTT+TGG + chr1_1:1249042-1249061 None:intergenic 30.0%
TAGTTTCCTAGAAATCAGAA+TGG - chr1_1:1249110-1249129 Msa0000220:five_prime_UTR 30.0%
CTTCAACATTACTAAACTTG+AGG + chr1_1:1249188-1249207 None:intergenic 30.0%
!! ATACGGAAAGTGTGTTTTTA+GGG - chr1_1:1249243-1249262 Msa0000220:five_prime_UTR 30.0%
GAAAAGATGTAAGAACTCAA+AGG - chr1_1:1245481-1245500 Msa0000220:CDS 30.0%
! TTTTCTTTGTTCCTTCACTA+GGG + chr1_1:1245616-1245635 None:intergenic 30.0%
! ATGTAAAGAAGCTTTAGTCA+TGG - chr1_1:1245874-1245893 Msa0000220:intron 30.0%
ATGAAATTTGAACCGATATG+TGG + chr1_1:1245920-1245939 None:intergenic 30.0%
! CATACTTTTATCTTGCCTTT+TGG - chr1_1:1245937-1245956 Msa0000220:intron 30.0%
! ATTTGAGTTCAAATCCTAAC+TGG - chr1_1:1246042-1246061 Msa0000220:intron 30.0%
TAATTAATAGTTCAGTCGGA+AGG + chr1_1:1246094-1246113 None:intergenic 30.0%
GACTGAACTATTAATTAGCA+TGG - chr1_1:1246097-1246116 Msa0000220:intron 30.0%
TCTCTATCGAACTACTTATA+TGG + chr1_1:1246241-1246260 None:intergenic 30.0%
! TTTAGAGCTTCAACAAAACA+CGG + chr1_1:1246391-1246410 None:intergenic 30.0%
GTAAGCTATTGTCAAAAACA+CGG - chr1_1:1246413-1246432 Msa0000220:intron 30.0%
GCCAATTCAAACTTACAATA+TGG - chr1_1:1246464-1246483 Msa0000220:intron 30.0%
GCCATATTGTAAGTTTGAAT+TGG + chr1_1:1246468-1246487 None:intergenic 30.0%
GATCAATAAAGGACGAATAA+AGG + chr1_1:1246539-1246558 None:intergenic 30.0%
TGATCAAAACTTCAAATCTC+AGG - chr1_1:1246554-1246573 Msa0000220:intron 30.0%
CTAATTAGACATACCGTAAA+TGG + chr1_1:1246621-1246640 None:intergenic 30.0%
CTTGTATGACACACATATAA+GGG - chr1_1:1247078-1247097 Msa0000220:intron 30.0%
TCTTAAAACGTGTCATAAGT+GGG - chr1_1:1247172-1247191 Msa0000220:intron 30.0%
AAAATCGCAATCAAAATCGA+AGG - chr1_1:1247429-1247448 Msa0000220:intron 30.0%
! AAATCGAAGGATTTTACTCA+AGG - chr1_1:1247442-1247461 Msa0000220:intron 30.0%
! GACTTTTGTAGAATCGATAT+AGG - chr1_1:1247464-1247483 Msa0000220:intron 30.0%
TAAAATCGCAATCAAAATCG+AGG - chr1_1:1247428-1247447 Msa0000220:intron 30.0%
GTATTTATAGAACTGGATCA+TGG - chr1_1:1247729-1247748 Msa0000220:CDS 30.0%
!!! AGGATTTTGATGGATTTTGA+AGG + chr1_1:1247817-1247836 None:intergenic 30.0%
!! ATAGGATTTTGCCTGTTTTT+GGG - chr1_1:1247865-1247884 Msa0000220:intron 30.0%
CCTTCAATCATGTCTTTAAA+TGG + chr1_1:1248161-1248180 None:intergenic 30.0%
CCATTTAAAGACATGATTGA+AGG - chr1_1:1248158-1248177 Msa0000220:intron 30.0%
TATATTGCTACTATGTTGCT+GGG - chr1_1:1248234-1248253 Msa0000220:intron 30.0%
AGACATGTGGTTATAATTAG+AGG - chr1_1:1248514-1248533 Msa0000220:intron 30.0%
GCCATCATCCATAATAAATA+TGG + chr1_1:1248589-1248608 None:intergenic 30.0%
!!! GTGAGTTTTGAAGAAAACAT+GGG + chr1_1:1248613-1248632 None:intergenic 30.0%
!!! TGTGAGTTTTGAAGAAAACA+TGG + chr1_1:1248614-1248633 None:intergenic 30.0%
GAAAAATGTCATCATCTGAT+AGG + chr1_1:1248743-1248762 None:intergenic 30.0%
CTATAATAACTTCACCAAAC+GGG - chr1_1:1248938-1248957 Msa0000220:CDS 30.0%
!!! GTCATTTTGGTTAACTTTTG+TGG + chr1_1:1249029-1249048 None:intergenic 30.0%
! TGTTCATCTTGTAGTCATTT+TGG + chr1_1:1249042-1249061 None:intergenic 30.0%
TAGTTTCCTAGAAATCAGAA+TGG - chr1_1:1249110-1249129 Msa0000220:five_prime_UTR 30.0%
CTTCAACATTACTAAACTTG+AGG + chr1_1:1249188-1249207 None:intergenic 30.0%
!! ATACGGAAAGTGTGTTTTTA+GGG - chr1_1:1249243-1249262 Msa0000220:five_prime_UTR 30.0%
GTGAGGCAATTAAATGGTTT+AGG + chr1_1:1245285-1245304 None:intergenic 35.0%
TGTTCTATTCCTAAGATGTC+TGG - chr1_1:1245396-1245415 Msa0000220:three_prime_UTR 35.0%
! AGAGAATGCCATTTCCTTAA+TGG - chr1_1:1245449-1245468 Msa0000220:CDS 35.0%
! GAGAATGCCATTTCCTTAAT+GGG - chr1_1:1245450-1245469 Msa0000220:CDS 35.0%
AAGATGTAAGAACTCAAAGG+AGG - chr1_1:1245484-1245503 Msa0000220:CDS 35.0%
! CTTTTCTTTGTTCCTTCACT+AGG + chr1_1:1245617-1245636 None:intergenic 35.0%
TTGGATGATAAGCCTATTGA+AGG - chr1_1:1245660-1245679 Msa0000220:CDS 35.0%
TTGGTGAAATCACCTTCAAT+AGG + chr1_1:1245675-1245694 None:intergenic 35.0%
ATTGAAGGTGATTTCACCAA+TGG - chr1_1:1245675-1245694 Msa0000220:CDS 35.0%
TTGAAGGTGATTTCACCAAT+GGG - chr1_1:1245676-1245695 Msa0000220:CDS 35.0%
AGTTCTGCTTATGATAGATG+TGG - chr1_1:1245708-1245727 Msa0000220:CDS 35.0%
! CTCTAGAAGTAACCACATAT+CGG - chr1_1:1245905-1245924 Msa0000220:intron 35.0%
TTCCACTAGAATCAACCAAA+AGG + chr1_1:1245955-1245974 None:intergenic 35.0%
TAAAACGATTGACGAGCAAA+AGG + chr1_1:1246019-1246038 None:intergenic 35.0%
ATCCTAACTGGAACAATCAT+CGG - chr1_1:1246054-1246073 Msa0000220:intron 35.0%
CTTAACTTTGTACCGAAATG+TGG - chr1_1:1246169-1246188 Msa0000220:CDS 35.0%
! GTGTCACTAGGATATTCTTT+CGG + chr1_1:1246209-1246228 None:intergenic 35.0%
AAGAGAGAAGAAAAGCCATA+TGG - chr1_1:1246594-1246613 Msa0000220:intron 35.0%
AGAGAGAAGAAAAGCCATAT+GGG - chr1_1:1246595-1246614 Msa0000220:intron 35.0%
TTACAAAGGCTTCTCTAATG+TGG - chr1_1:1246660-1246679 Msa0000220:intron 35.0%
GCAGCATCATACATATCATA+AGG + chr1_1:1246843-1246862 None:intergenic 35.0%
! AAAGTACCCTGTTGATATAC+AGG - chr1_1:1246881-1246900 Msa0000220:intron 35.0%
AACCTACCTGTATATCAACA+GGG + chr1_1:1246890-1246909 None:intergenic 35.0%
TAACCTACCTGTATATCAAC+AGG + chr1_1:1246891-1246910 None:intergenic 35.0%
AGAACTCAAACTAGTCAATG+AGG - chr1_1:1247004-1247023 Msa0000220:intron 35.0%
GCTTGTATGACACACATATA+AGG - chr1_1:1247077-1247096 Msa0000220:intron 35.0%
GTCTTAAAACGTGTCATAAG+TGG - chr1_1:1247171-1247190 Msa0000220:intron 35.0%
!! ACAACTGGCTTGTAAGTTTA+TGG + chr1_1:1247204-1247223 None:intergenic 35.0%
! AACTTACAAGCCAGTTGTTT+TGG - chr1_1:1247206-1247225 Msa0000220:intron 35.0%
! ATTTCAAGTGTTCGATGTGA+TGG - chr1_1:1247319-1247338 Msa0000220:intron 35.0%
GGAGTCTTACATTGTAATCA+AGG - chr1_1:1247349-1247368 Msa0000220:intron 35.0%
GACTTTACTTCAAGTCGAAA+GGG - chr1_1:1247385-1247404 Msa0000220:intron 35.0%
TCGATATAGGATAGCAAAGT+CGG - chr1_1:1247477-1247496 Msa0000220:intron 35.0%
AGATGAACGTGTAACTATTG+AGG - chr1_1:1247664-1247683 Msa0000220:CDS 35.0%
!!! AATGAAATGTTTTGGCCTTG+TGG - chr1_1:1247706-1247725 Msa0000220:CDS 35.0%
!!! ATGAAATGTTTTGGCCTTGT+GGG - chr1_1:1247707-1247726 Msa0000220:CDS 35.0%
CAGTTCTATAAATACCCACA+AGG + chr1_1:1247724-1247743 None:intergenic 35.0%
CTTGTGGGTATTTATAGAAC+TGG - chr1_1:1247722-1247741 Msa0000220:CDS 35.0%
AACTGGATCATGGATTCAAT+CGG - chr1_1:1247739-1247758 Msa0000220:CDS 35.0%
AATCGGGTCAATTTACAAAC+CGG - chr1_1:1247756-1247775 Msa0000220:intron 35.0%
! AAAAGGGTCAATTTTTGACC+CGG + chr1_1:1247778-1247797 None:intergenic 35.0%
! TCAAAATCGCAGGATTTTGA+TGG + chr1_1:1247827-1247846 None:intergenic 35.0%
! CAAAATCCTGCGATTTTGAA+CGG - chr1_1:1247828-1247847 Msa0000220:intron 35.0%
!! ACGGATTTCACGATTTTGAT+AGG - chr1_1:1247847-1247866 Msa0000220:intron 35.0%
! GATAGGATTTTGCCTGTTTT+TGG - chr1_1:1247864-1247883 Msa0000220:intron 35.0%
! GTCGTAAAAACCTGGATTTT+TGG - chr1_1:1247925-1247944 Msa0000220:intron 35.0%
! AAAAATGACTTGCAAGACGA+AGG + chr1_1:1248020-1248039 None:intergenic 35.0%
CAGCAACATAGTAGCAATAT+AGG + chr1_1:1248235-1248254 None:intergenic 35.0%
CTATATTGCTACTATGTTGC+TGG - chr1_1:1248233-1248252 Msa0000220:intron 35.0%
CTTATGAGTGTTCCTGTAAT+GGG - chr1_1:1248266-1248285 Msa0000220:intron 35.0%
TTATGAGTGTTCCTGTAATG+GGG - chr1_1:1248267-1248286 Msa0000220:intron 35.0%
GAGGAACTAAAACGAAAAGT+TGG - chr1_1:1248533-1248552 Msa0000220:intron 35.0%
! TCAGATGATGACATTTTTCG+AGG - chr1_1:1248744-1248763 Msa0000220:CDS 35.0%
AAATGGCGCAATTTCATGAA+GGG - chr1_1:1248780-1248799 Msa0000220:CDS 35.0%
!!! AGCAAGGATGTTTTTTGATG+AGG - chr1_1:1248815-1248834 Msa0000220:CDS 35.0%
!!! TTTTTTGATGAGGCAGAGAA+GGG - chr1_1:1248825-1248844 Msa0000220:CDS 35.0%
TATTGTGTGTTTCCGAGATA+CGG - chr1_1:1249226-1249245 Msa0000220:five_prime_UTR 35.0%
AAAACACACTTTCCGTATCT+CGG + chr1_1:1249241-1249260 None:intergenic 35.0%
!! GATACGGAAAGTGTGTTTTT+AGG - chr1_1:1249242-1249261 Msa0000220:five_prime_UTR 35.0%
!!! TACGGAAAGTGTGTTTTTAG+GGG - chr1_1:1249244-1249263 Msa0000220:five_prime_UTR 35.0%
!! TTTTAGGGGACAAAAAGTGT+TGG - chr1_1:1249258-1249277 Msa0000220:five_prime_UTR 35.0%
!! TTTAGGGGACAAAAAGTGTT+GGG - chr1_1:1249259-1249278 Msa0000220:five_prime_UTR 35.0%
GTGAGGCAATTAAATGGTTT+AGG + chr1_1:1245285-1245304 None:intergenic 35.0%
TGTTCTATTCCTAAGATGTC+TGG - chr1_1:1245396-1245415 Msa0000220:three_prime_UTR 35.0%
! AGAGAATGCCATTTCCTTAA+TGG - chr1_1:1245449-1245468 Msa0000220:CDS 35.0%
! GAGAATGCCATTTCCTTAAT+GGG - chr1_1:1245450-1245469 Msa0000220:CDS 35.0%
AAGATGTAAGAACTCAAAGG+AGG - chr1_1:1245484-1245503 Msa0000220:CDS 35.0%
! CTTTTCTTTGTTCCTTCACT+AGG + chr1_1:1245617-1245636 None:intergenic 35.0%
TTGGATGATAAGCCTATTGA+AGG - chr1_1:1245660-1245679 Msa0000220:CDS 35.0%
TTGGTGAAATCACCTTCAAT+AGG + chr1_1:1245675-1245694 None:intergenic 35.0%
ATTGAAGGTGATTTCACCAA+TGG - chr1_1:1245675-1245694 Msa0000220:CDS 35.0%
TTGAAGGTGATTTCACCAAT+GGG - chr1_1:1245676-1245695 Msa0000220:CDS 35.0%
AGTTCTGCTTATGATAGATG+TGG - chr1_1:1245708-1245727 Msa0000220:CDS 35.0%
! CTCTAGAAGTAACCACATAT+CGG - chr1_1:1245905-1245924 Msa0000220:intron 35.0%
TTCCACTAGAATCAACCAAA+AGG + chr1_1:1245955-1245974 None:intergenic 35.0%
TAAAACGATTGACGAGCAAA+AGG + chr1_1:1246019-1246038 None:intergenic 35.0%
ATCCTAACTGGAACAATCAT+CGG - chr1_1:1246054-1246073 Msa0000220:intron 35.0%
CTTAACTTTGTACCGAAATG+TGG - chr1_1:1246169-1246188 Msa0000220:CDS 35.0%
! GTGTCACTAGGATATTCTTT+CGG + chr1_1:1246209-1246228 None:intergenic 35.0%
AAGAGAGAAGAAAAGCCATA+TGG - chr1_1:1246594-1246613 Msa0000220:intron 35.0%
AGAGAGAAGAAAAGCCATAT+GGG - chr1_1:1246595-1246614 Msa0000220:intron 35.0%
TTACAAAGGCTTCTCTAATG+TGG - chr1_1:1246660-1246679 Msa0000220:intron 35.0%
GCAGCATCATACATATCATA+AGG + chr1_1:1246843-1246862 None:intergenic 35.0%
! AAAGTACCCTGTTGATATAC+AGG - chr1_1:1246881-1246900 Msa0000220:intron 35.0%
AACCTACCTGTATATCAACA+GGG + chr1_1:1246890-1246909 None:intergenic 35.0%
TAACCTACCTGTATATCAAC+AGG + chr1_1:1246891-1246910 None:intergenic 35.0%
AGAACTCAAACTAGTCAATG+AGG - chr1_1:1247004-1247023 Msa0000220:intron 35.0%
GCTTGTATGACACACATATA+AGG - chr1_1:1247077-1247096 Msa0000220:intron 35.0%
GTCTTAAAACGTGTCATAAG+TGG - chr1_1:1247171-1247190 Msa0000220:intron 35.0%
!! ACAACTGGCTTGTAAGTTTA+TGG + chr1_1:1247204-1247223 None:intergenic 35.0%
! AACTTACAAGCCAGTTGTTT+TGG - chr1_1:1247206-1247225 Msa0000220:intron 35.0%
! ATTTCAAGTGTTCGATGTGA+TGG - chr1_1:1247319-1247338 Msa0000220:intron 35.0%
GGAGTCTTACATTGTAATCA+AGG - chr1_1:1247349-1247368 Msa0000220:intron 35.0%
GACTTTACTTCAAGTCGAAA+GGG - chr1_1:1247385-1247404 Msa0000220:intron 35.0%
TCGATATAGGATAGCAAAGT+CGG - chr1_1:1247477-1247496 Msa0000220:intron 35.0%
AGATGAACGTGTAACTATTG+AGG - chr1_1:1247664-1247683 Msa0000220:CDS 35.0%
!!! AATGAAATGTTTTGGCCTTG+TGG - chr1_1:1247706-1247725 Msa0000220:CDS 35.0%
!!! ATGAAATGTTTTGGCCTTGT+GGG - chr1_1:1247707-1247726 Msa0000220:CDS 35.0%
CAGTTCTATAAATACCCACA+AGG + chr1_1:1247724-1247743 None:intergenic 35.0%
CTTGTGGGTATTTATAGAAC+TGG - chr1_1:1247722-1247741 Msa0000220:CDS 35.0%
AACTGGATCATGGATTCAAT+CGG - chr1_1:1247739-1247758 Msa0000220:CDS 35.0%
AATCGGGTCAATTTACAAAC+CGG - chr1_1:1247756-1247775 Msa0000220:intron 35.0%
! AAAAGGGTCAATTTTTGACC+CGG + chr1_1:1247778-1247797 None:intergenic 35.0%
! TCAAAATCGCAGGATTTTGA+TGG + chr1_1:1247827-1247846 None:intergenic 35.0%
! CAAAATCCTGCGATTTTGAA+CGG - chr1_1:1247828-1247847 Msa0000220:intron 35.0%
!! ACGGATTTCACGATTTTGAT+AGG - chr1_1:1247847-1247866 Msa0000220:intron 35.0%
! GATAGGATTTTGCCTGTTTT+TGG - chr1_1:1247864-1247883 Msa0000220:intron 35.0%
! GTCGTAAAAACCTGGATTTT+TGG - chr1_1:1247925-1247944 Msa0000220:intron 35.0%
! AAAAATGACTTGCAAGACGA+AGG + chr1_1:1248020-1248039 None:intergenic 35.0%
CAGCAACATAGTAGCAATAT+AGG + chr1_1:1248235-1248254 None:intergenic 35.0%
CTATATTGCTACTATGTTGC+TGG - chr1_1:1248233-1248252 Msa0000220:intron 35.0%
CTTATGAGTGTTCCTGTAAT+GGG - chr1_1:1248266-1248285 Msa0000220:intron 35.0%
TTATGAGTGTTCCTGTAATG+GGG - chr1_1:1248267-1248286 Msa0000220:intron 35.0%
GAGGAACTAAAACGAAAAGT+TGG - chr1_1:1248533-1248552 Msa0000220:intron 35.0%
! TCAGATGATGACATTTTTCG+AGG - chr1_1:1248744-1248763 Msa0000220:CDS 35.0%
AAATGGCGCAATTTCATGAA+GGG - chr1_1:1248780-1248799 Msa0000220:CDS 35.0%
!!! AGCAAGGATGTTTTTTGATG+AGG - chr1_1:1248815-1248834 Msa0000220:CDS 35.0%
!!! TTTTTTGATGAGGCAGAGAA+GGG - chr1_1:1248825-1248844 Msa0000220:CDS 35.0%
TATTGTGTGTTTCCGAGATA+CGG - chr1_1:1249226-1249245 Msa0000220:five_prime_UTR 35.0%
AAAACACACTTTCCGTATCT+CGG + chr1_1:1249241-1249260 None:intergenic 35.0%
!! GATACGGAAAGTGTGTTTTT+AGG - chr1_1:1249242-1249261 Msa0000220:five_prime_UTR 35.0%
!!! TACGGAAAGTGTGTTTTTAG+GGG - chr1_1:1249244-1249263 Msa0000220:five_prime_UTR 35.0%
!! TTTTAGGGGACAAAAAGTGT+TGG - chr1_1:1249258-1249277 Msa0000220:five_prime_UTR 35.0%
!! TTTAGGGGACAAAAAGTGTT+GGG - chr1_1:1249259-1249278 Msa0000220:five_prime_UTR 35.0%
AGAAGAACACCAGACATCTT+AGG + chr1_1:1245408-1245427 None:intergenic 40.0%
AGATGTCTGGTGTTCTTCTT+TGG - chr1_1:1245409-1245428 Msa0000220:three_prime_UTR 40.0%
GATGTCTGGTGTTCTTCTTT+GGG - chr1_1:1245410-1245429 Msa0000220:three_prime_UTR 40.0%
GTTCTTCTTTGGGTGAATTG+TGG - chr1_1:1245420-1245439 Msa0000220:exon 40.0%
TCCAAGACCCATTAAGGAAA+TGG + chr1_1:1245460-1245479 None:intergenic 40.0%
! ATTTCCTTAATGGGTCTTGG+AGG - chr1_1:1245459-1245478 Msa0000220:CDS 40.0%
! TTTTCCTCCAAGACCCATTA+AGG + chr1_1:1245466-1245485 None:intergenic 40.0%
AGGAGGTTTAGACATTGTTC+TGG - chr1_1:1245501-1245520 Msa0000220:CDS 40.0%
TGAAGGTGATTTCACCAATG+GGG - chr1_1:1245677-1245696 Msa0000220:CDS 40.0%
AGAACTCAAAAGTTCCCCAT+TGG + chr1_1:1245694-1245713 None:intergenic 40.0%
!! TGCCTTTTGGTTGATTCTAG+TGG - chr1_1:1245950-1245969 Msa0000220:intron 40.0%
TCCATCTCTTCTACGAATGA+AGG - chr1_1:1246120-1246139 Msa0000220:CDS 40.0%
ACCTTCATTCGTAGAAGAGA+TGG + chr1_1:1246124-1246143 None:intergenic 40.0%
GGAAACTTGAGACCACATTT+CGG + chr1_1:1246184-1246203 None:intergenic 40.0%
CACTAGGATATTCTTTCGGT+AGG + chr1_1:1246205-1246224 None:intergenic 40.0%
! TGGATGATTGTAGTGTCACT+AGG + chr1_1:1246221-1246240 None:intergenic 40.0%
CACGCGTGATTATGTTAAAC+TGG - chr1_1:1246439-1246458 Msa0000220:intron 40.0%
AAAGCCATATGGGCCATTTA+CGG - chr1_1:1246605-1246624 Msa0000220:intron 40.0%
CAGAAGAACAGATGAGTTAG+TGG - chr1_1:1246737-1246756 Msa0000220:intron 40.0%
AGAACAGATGAGTTAGTGGA+TGG - chr1_1:1246741-1246760 Msa0000220:intron 40.0%
TACCCTGTTGATATACAGGT+AGG - chr1_1:1246885-1246904 Msa0000220:intron 40.0%
ACATTTCAACTTTGGGCATG+TGG + chr1_1:1246924-1246943 None:intergenic 40.0%
GTATGACACACATATAAGGG+TGG - chr1_1:1247081-1247100 Msa0000220:intron 40.0%
CCTAAATCAGCCAAAACAAC+TGG + chr1_1:1247219-1247238 None:intergenic 40.0%
!!! CCAGTTGTTTTGGCTGATTT+AGG - chr1_1:1247216-1247235 Msa0000220:intron 40.0%
CTGAAATGTAACCTGCAAGT+GGG + chr1_1:1247299-1247318 None:intergenic 40.0%
! TCTGAAATGTAACCTGCAAG+TGG + chr1_1:1247300-1247319 None:intergenic 40.0%
GGACTTTACTTCAAGTCGAA+AGG - chr1_1:1247384-1247403 Msa0000220:intron 40.0%
CGATATAGGATAGCAAAGTC+GGG - chr1_1:1247478-1247497 Msa0000220:intron 40.0%
! GTAACTATTGAGGAAGTGTG+AGG - chr1_1:1247674-1247693 Msa0000220:CDS 40.0%
ACTGGATCATGGATTCAATC+GGG - chr1_1:1247740-1247759 Msa0000220:CDS 40.0%
ATCGGGTCAATTTACAAACC+GGG - chr1_1:1247757-1247776 Msa0000220:intron 40.0%
TGAAATCCGTTCAAAATCGC+AGG + chr1_1:1247837-1247856 None:intergenic 40.0%
!!! CTGTTTTTGGGACTTTGCTA+GGG - chr1_1:1247877-1247896 Msa0000220:CDS 40.0%
TACGCAAAGTCGTAAAAACC+TGG - chr1_1:1247917-1247936 Msa0000220:intron 40.0%
CGACTTAAGTCCAAAAATCC+AGG + chr1_1:1247938-1247957 None:intergenic 40.0%
AAGACATGATTGAAGGGATG+AGG - chr1_1:1248165-1248184 Msa0000220:intron 40.0%
CCATTACAGGAACACTCATA+AGG + chr1_1:1248268-1248287 None:intergenic 40.0%
CCTTATGAGTGTTCCTGTAA+TGG - chr1_1:1248265-1248284 Msa0000220:intron 40.0%
!! TCTGTTGAAGCTTTGGATTG+TGG + chr1_1:1248299-1248318 None:intergenic 40.0%
ACCAACATACTTAGAGACGT+TGG - chr1_1:1248365-1248384 Msa0000220:intron 40.0%
TCCAACGTCTCTAAGTATGT+TGG + chr1_1:1248369-1248388 None:intergenic 40.0%
TCGTCTTATAGTGCTAGAAG+AGG - chr1_1:1248678-1248697 Msa0000220:intron 40.0%
CATGAAATTGCGCCATTTGT+CGG + chr1_1:1248778-1248797 None:intergenic 40.0%
CAAATGGCGCAATTTCATGA+AGG - chr1_1:1248779-1248798 Msa0000220:CDS 40.0%
AGGGTCAAATAAAGAGAGCA+AGG - chr1_1:1248799-1248818 Msa0000220:CDS 40.0%
!!! GTTTTTTGATGAGGCAGAGA+AGG - chr1_1:1248824-1248843 Msa0000220:CDS 40.0%
! TTTTCCTACATAAGCCCGTT+TGG + chr1_1:1248955-1248974 None:intergenic 40.0%
TTATCACTTCCTGTTGCTCT+TGG - chr1_1:1248987-1249006 Msa0000220:CDS 40.0%
!! TTAGGGGACAAAAAGTGTTG+GGG - chr1_1:1249260-1249279 Msa0000220:five_prime_UTR 40.0%
AGAAGAACACCAGACATCTT+AGG + chr1_1:1245408-1245427 None:intergenic 40.0%
AGATGTCTGGTGTTCTTCTT+TGG - chr1_1:1245409-1245428 Msa0000220:three_prime_UTR 40.0%
GATGTCTGGTGTTCTTCTTT+GGG - chr1_1:1245410-1245429 Msa0000220:three_prime_UTR 40.0%
GTTCTTCTTTGGGTGAATTG+TGG - chr1_1:1245420-1245439 Msa0000220:exon 40.0%
TCCAAGACCCATTAAGGAAA+TGG + chr1_1:1245460-1245479 None:intergenic 40.0%
! ATTTCCTTAATGGGTCTTGG+AGG - chr1_1:1245459-1245478 Msa0000220:CDS 40.0%
! TTTTCCTCCAAGACCCATTA+AGG + chr1_1:1245466-1245485 None:intergenic 40.0%
AGGAGGTTTAGACATTGTTC+TGG - chr1_1:1245501-1245520 Msa0000220:CDS 40.0%
TGAAGGTGATTTCACCAATG+GGG - chr1_1:1245677-1245696 Msa0000220:CDS 40.0%
AGAACTCAAAAGTTCCCCAT+TGG + chr1_1:1245694-1245713 None:intergenic 40.0%
!! TGCCTTTTGGTTGATTCTAG+TGG - chr1_1:1245950-1245969 Msa0000220:intron 40.0%
TCCATCTCTTCTACGAATGA+AGG - chr1_1:1246120-1246139 Msa0000220:CDS 40.0%
ACCTTCATTCGTAGAAGAGA+TGG + chr1_1:1246124-1246143 None:intergenic 40.0%
GGAAACTTGAGACCACATTT+CGG + chr1_1:1246184-1246203 None:intergenic 40.0%
CACTAGGATATTCTTTCGGT+AGG + chr1_1:1246205-1246224 None:intergenic 40.0%
! TGGATGATTGTAGTGTCACT+AGG + chr1_1:1246221-1246240 None:intergenic 40.0%
CACGCGTGATTATGTTAAAC+TGG - chr1_1:1246439-1246458 Msa0000220:intron 40.0%
AAAGCCATATGGGCCATTTA+CGG - chr1_1:1246605-1246624 Msa0000220:intron 40.0%
CAGAAGAACAGATGAGTTAG+TGG - chr1_1:1246737-1246756 Msa0000220:intron 40.0%
AGAACAGATGAGTTAGTGGA+TGG - chr1_1:1246741-1246760 Msa0000220:intron 40.0%
TACCCTGTTGATATACAGGT+AGG - chr1_1:1246885-1246904 Msa0000220:intron 40.0%
ACATTTCAACTTTGGGCATG+TGG + chr1_1:1246924-1246943 None:intergenic 40.0%
GTATGACACACATATAAGGG+TGG - chr1_1:1247081-1247100 Msa0000220:intron 40.0%
CCTAAATCAGCCAAAACAAC+TGG + chr1_1:1247219-1247238 None:intergenic 40.0%
!!! CCAGTTGTTTTGGCTGATTT+AGG - chr1_1:1247216-1247235 Msa0000220:intron 40.0%
CTGAAATGTAACCTGCAAGT+GGG + chr1_1:1247299-1247318 None:intergenic 40.0%
! TCTGAAATGTAACCTGCAAG+TGG + chr1_1:1247300-1247319 None:intergenic 40.0%
GGACTTTACTTCAAGTCGAA+AGG - chr1_1:1247384-1247403 Msa0000220:intron 40.0%
CGATATAGGATAGCAAAGTC+GGG - chr1_1:1247478-1247497 Msa0000220:intron 40.0%
! GTAACTATTGAGGAAGTGTG+AGG - chr1_1:1247674-1247693 Msa0000220:CDS 40.0%
ACTGGATCATGGATTCAATC+GGG - chr1_1:1247740-1247759 Msa0000220:CDS 40.0%
ATCGGGTCAATTTACAAACC+GGG - chr1_1:1247757-1247776 Msa0000220:intron 40.0%
TGAAATCCGTTCAAAATCGC+AGG + chr1_1:1247837-1247856 None:intergenic 40.0%
!!! CTGTTTTTGGGACTTTGCTA+GGG - chr1_1:1247877-1247896 Msa0000220:CDS 40.0%
TACGCAAAGTCGTAAAAACC+TGG - chr1_1:1247917-1247936 Msa0000220:intron 40.0%
CGACTTAAGTCCAAAAATCC+AGG + chr1_1:1247938-1247957 None:intergenic 40.0%
AAGACATGATTGAAGGGATG+AGG - chr1_1:1248165-1248184 Msa0000220:intron 40.0%
CCATTACAGGAACACTCATA+AGG + chr1_1:1248268-1248287 None:intergenic 40.0%
CCTTATGAGTGTTCCTGTAA+TGG - chr1_1:1248265-1248284 Msa0000220:intron 40.0%
!! TCTGTTGAAGCTTTGGATTG+TGG + chr1_1:1248299-1248318 None:intergenic 40.0%
ACCAACATACTTAGAGACGT+TGG - chr1_1:1248365-1248384 Msa0000220:intron 40.0%
TCCAACGTCTCTAAGTATGT+TGG + chr1_1:1248369-1248388 None:intergenic 40.0%
TCGTCTTATAGTGCTAGAAG+AGG - chr1_1:1248678-1248697 Msa0000220:intron 40.0%
CATGAAATTGCGCCATTTGT+CGG + chr1_1:1248778-1248797 None:intergenic 40.0%
CAAATGGCGCAATTTCATGA+AGG - chr1_1:1248779-1248798 Msa0000220:CDS 40.0%
AGGGTCAAATAAAGAGAGCA+AGG - chr1_1:1248799-1248818 Msa0000220:CDS 40.0%
!!! GTTTTTTGATGAGGCAGAGA+AGG - chr1_1:1248824-1248843 Msa0000220:CDS 40.0%
! TTTTCCTACATAAGCCCGTT+TGG + chr1_1:1248955-1248974 None:intergenic 40.0%
TTATCACTTCCTGTTGCTCT+TGG - chr1_1:1248987-1249006 Msa0000220:CDS 40.0%
!! TTAGGGGACAAAAAGTGTTG+GGG - chr1_1:1249260-1249279 Msa0000220:five_prime_UTR 40.0%
! GCCATTTCCTTAATGGGTCT+TGG - chr1_1:1245456-1245475 Msa0000220:CDS 45.0%
TGAACCTACAAGATCCTCAG+AGG - chr1_1:1245557-1245576 Msa0000220:CDS 45.0%
TACAAGATCCTCAGAGGAGA+GGG - chr1_1:1245563-1245582 Msa0000220:CDS 45.0%
GACCGATGATTGTTCCAGTT+AGG + chr1_1:1246059-1246078 None:intergenic 45.0%
CATACCGTAAATGGCCCATA+TGG + chr1_1:1246612-1246631 None:intergenic 45.0%
! GGCTTCTCTAATGTGGATTG+TGG - chr1_1:1246667-1246686 Msa0000220:intron 45.0%
AGAGTGGTCAGTTTCTACTG+AGG + chr1_1:1246694-1246713 None:intergenic 45.0%
! GGTGTGATGTGTGAAGCATT+AGG + chr1_1:1246768-1246787 None:intergenic 45.0%
TGCTTCACACATCACACCAA+AGG - chr1_1:1246770-1246789 Msa0000220:intron 45.0%
TCTTTGTTCCCATCTGTCCA+AGG + chr1_1:1246796-1246815 None:intergenic 45.0%
! GTTCGATGTGATGGAGTGTA+AGG - chr1_1:1247328-1247347 Msa0000220:intron 45.0%
TCGAAAGGGAGTAGCGAAAT+CGG - chr1_1:1247399-1247418 Msa0000220:intron 45.0%
CCTAGCAAAGTCCCAAAAAC+AGG + chr1_1:1247879-1247898 None:intergenic 45.0%
!!! CCTGTTTTTGGGACTTTGCT+AGG - chr1_1:1247876-1247895 Msa0000220:CDS 45.0%
TACTATGTTGCTGGGACTGT+GGG - chr1_1:1248242-1248261 Msa0000220:intron 45.0%
! TGTGGTTCTATCCCCATTAC+AGG + chr1_1:1248281-1248300 None:intergenic 45.0%
GATGCTCTCTGTTGAAGCTT+TGG + chr1_1:1248306-1248325 None:intergenic 45.0%
GAGCATCTACAATGCTGCAT+TGG - chr1_1:1248319-1248338 Msa0000220:intron 45.0%
! TACAATGCTGCATTGGCACT+TGG - chr1_1:1248326-1248345 Msa0000220:intron 45.0%
AGTGCTTGGTATGGAAAGTG+TGG + chr1_1:1248488-1248507 None:intergenic 45.0%
TCTAGCACAAGTGCTTGGTA+TGG + chr1_1:1248497-1248516 None:intergenic 45.0%
ACATGTCTAGCACAAGTGCT+TGG + chr1_1:1248502-1248521 None:intergenic 45.0%
AAGCACTTGTGCTAGACATG+TGG - chr1_1:1248501-1248520 Msa0000220:intron 45.0%
CTAGCACTATAAGACGACCA+TGG + chr1_1:1248675-1248694 None:intergenic 45.0%
GTACCTTCCGCAAGATGAAT+TGG - chr1_1:1248707-1248726 Msa0000220:intron 45.0%
GCTTGTGCCAATTCATCTTG+CGG + chr1_1:1248717-1248736 None:intergenic 45.0%
CAAGATGAATTGGCACAAGC+TGG - chr1_1:1248717-1248736 Msa0000220:intron 45.0%
AGCTCAGTTCAGCAAGTAGA+TGG - chr1_1:1248856-1248875 Msa0000220:CDS 45.0%
AGCAAGTAGATGGCCTGTTT+GGG - chr1_1:1248866-1248885 Msa0000220:CDS 45.0%
AACAGCAAAGATGCCCAAAC+AGG + chr1_1:1248882-1248901 None:intergenic 45.0%
!! GGGCATCTTTGCTGTTGTAT+AGG - chr1_1:1248886-1248905 Msa0000220:CDS 45.0%
! TTCACCAAACGGGCTTATGT+AGG - chr1_1:1248948-1248967 Msa0000220:CDS 45.0%
! GTTGCTATTCCAAGAGCAAC+AGG + chr1_1:1248999-1249018 None:intergenic 45.0%
GCTCTTGGAATAGCAACGTT+TGG - chr1_1:1249002-1249021 Msa0000220:CDS 45.0%
! GCCATTTCCTTAATGGGTCT+TGG - chr1_1:1245456-1245475 Msa0000220:CDS 45.0%
TGAACCTACAAGATCCTCAG+AGG - chr1_1:1245557-1245576 Msa0000220:CDS 45.0%
TACAAGATCCTCAGAGGAGA+GGG - chr1_1:1245563-1245582 Msa0000220:CDS 45.0%
GACCGATGATTGTTCCAGTT+AGG + chr1_1:1246059-1246078 None:intergenic 45.0%
CATACCGTAAATGGCCCATA+TGG + chr1_1:1246612-1246631 None:intergenic 45.0%
! GGCTTCTCTAATGTGGATTG+TGG - chr1_1:1246667-1246686 Msa0000220:intron 45.0%
AGAGTGGTCAGTTTCTACTG+AGG + chr1_1:1246694-1246713 None:intergenic 45.0%
! GGTGTGATGTGTGAAGCATT+AGG + chr1_1:1246768-1246787 None:intergenic 45.0%
TGCTTCACACATCACACCAA+AGG - chr1_1:1246770-1246789 Msa0000220:intron 45.0%
TCTTTGTTCCCATCTGTCCA+AGG + chr1_1:1246796-1246815 None:intergenic 45.0%
! GTTCGATGTGATGGAGTGTA+AGG - chr1_1:1247328-1247347 Msa0000220:intron 45.0%
TCGAAAGGGAGTAGCGAAAT+CGG - chr1_1:1247399-1247418 Msa0000220:intron 45.0%
CCTAGCAAAGTCCCAAAAAC+AGG + chr1_1:1247879-1247898 None:intergenic 45.0%
!!! CCTGTTTTTGGGACTTTGCT+AGG - chr1_1:1247876-1247895 Msa0000220:CDS 45.0%
TACTATGTTGCTGGGACTGT+GGG - chr1_1:1248242-1248261 Msa0000220:intron 45.0%
! TGTGGTTCTATCCCCATTAC+AGG + chr1_1:1248281-1248300 None:intergenic 45.0%
GATGCTCTCTGTTGAAGCTT+TGG + chr1_1:1248306-1248325 None:intergenic 45.0%
GAGCATCTACAATGCTGCAT+TGG - chr1_1:1248319-1248338 Msa0000220:intron 45.0%
! TACAATGCTGCATTGGCACT+TGG - chr1_1:1248326-1248345 Msa0000220:intron 45.0%
AGTGCTTGGTATGGAAAGTG+TGG + chr1_1:1248488-1248507 None:intergenic 45.0%
TCTAGCACAAGTGCTTGGTA+TGG + chr1_1:1248497-1248516 None:intergenic 45.0%
ACATGTCTAGCACAAGTGCT+TGG + chr1_1:1248502-1248521 None:intergenic 45.0%
AAGCACTTGTGCTAGACATG+TGG - chr1_1:1248501-1248520 Msa0000220:intron 45.0%
CTAGCACTATAAGACGACCA+TGG + chr1_1:1248675-1248694 None:intergenic 45.0%
GTACCTTCCGCAAGATGAAT+TGG - chr1_1:1248707-1248726 Msa0000220:intron 45.0%
GCTTGTGCCAATTCATCTTG+CGG + chr1_1:1248717-1248736 None:intergenic 45.0%
CAAGATGAATTGGCACAAGC+TGG - chr1_1:1248717-1248736 Msa0000220:intron 45.0%
AGCTCAGTTCAGCAAGTAGA+TGG - chr1_1:1248856-1248875 Msa0000220:CDS 45.0%
AGCAAGTAGATGGCCTGTTT+GGG - chr1_1:1248866-1248885 Msa0000220:CDS 45.0%
AACAGCAAAGATGCCCAAAC+AGG + chr1_1:1248882-1248901 None:intergenic 45.0%
!! GGGCATCTTTGCTGTTGTAT+AGG - chr1_1:1248886-1248905 Msa0000220:CDS 45.0%
! TTCACCAAACGGGCTTATGT+AGG - chr1_1:1248948-1248967 Msa0000220:CDS 45.0%
! GTTGCTATTCCAAGAGCAAC+AGG + chr1_1:1248999-1249018 None:intergenic 45.0%
GCTCTTGGAATAGCAACGTT+TGG - chr1_1:1249002-1249021 Msa0000220:CDS 45.0%
! CTCTCCTCTGAGGATCTTGT+AGG + chr1_1:1245564-1245583 None:intergenic 50.0%
CTACAAGATCCTCAGAGGAG+AGG - chr1_1:1245562-1245581 Msa0000220:CDS 50.0%
TTCATACACCCTCTCCTCTG+AGG + chr1_1:1245574-1245593 None:intergenic 50.0%
! AGAGGAGAGGGTGTATGAAG+TGG - chr1_1:1245575-1245594 Msa0000220:CDS 50.0%
ACACATCACACCAAAGGCCT+TGG - chr1_1:1246776-1246795 Msa0000220:intron 50.0%
ACCAAAGGCCTTGGACAGAT+GGG - chr1_1:1246785-1246804 Msa0000220:intron 50.0%
CGAAAGGGAGTAGCGAAATC+GGG - chr1_1:1247400-1247419 Msa0000220:intron 50.0%
CATGATTGAAGGGATGAGGC+TGG - chr1_1:1248169-1248188 Msa0000220:intron 50.0%
CTACTATGTTGCTGGGACTG+TGG - chr1_1:1248241-1248260 Msa0000220:intron 50.0%
GTGCCAATTCATCTTGCGGA+AGG + chr1_1:1248713-1248732 None:intergenic 50.0%
GAGGCAGAGTAACCGACAAA+TGG - chr1_1:1248763-1248782 Msa0000220:CDS 50.0%
CAGCAAGTAGATGGCCTGTT+TGG - chr1_1:1248865-1248884 Msa0000220:CDS 50.0%
! CTCTCCTCTGAGGATCTTGT+AGG + chr1_1:1245564-1245583 None:intergenic 50.0%
CTACAAGATCCTCAGAGGAG+AGG - chr1_1:1245562-1245581 Msa0000220:CDS 50.0%
TTCATACACCCTCTCCTCTG+AGG + chr1_1:1245574-1245593 None:intergenic 50.0%
! AGAGGAGAGGGTGTATGAAG+TGG - chr1_1:1245575-1245594 Msa0000220:CDS 50.0%
ACACATCACACCAAAGGCCT+TGG - chr1_1:1246776-1246795 Msa0000220:intron 50.0%
ACCAAAGGCCTTGGACAGAT+GGG - chr1_1:1246785-1246804 Msa0000220:intron 50.0%
CGAAAGGGAGTAGCGAAATC+GGG - chr1_1:1247400-1247419 Msa0000220:intron 50.0%
CATGATTGAAGGGATGAGGC+TGG - chr1_1:1248169-1248188 Msa0000220:intron 50.0%
CTACTATGTTGCTGGGACTG+TGG - chr1_1:1248241-1248260 Msa0000220:intron 50.0%
GTGCCAATTCATCTTGCGGA+AGG + chr1_1:1248713-1248732 None:intergenic 50.0%
GAGGCAGAGTAACCGACAAA+TGG - chr1_1:1248763-1248782 Msa0000220:CDS 50.0%
CAGCAAGTAGATGGCCTGTT+TGG - chr1_1:1248865-1248884 Msa0000220:CDS 50.0%
GAAGCAAGCAGCCCTAGTGA+AGG - chr1_1:1245602-1245621 Msa0000220:CDS 55.0%
CACCAAAGGCCTTGGACAGA+TGG - chr1_1:1246784-1246803 Msa0000220:intron 55.0%
TCCCATCTGTCCAAGGCCTT+TGG + chr1_1:1246789-1246808 None:intergenic 55.0%
GAAGCAAGCAGCCCTAGTGA+AGG - chr1_1:1245602-1245621 Msa0000220:CDS 55.0%
CACCAAAGGCCTTGGACAGA+TGG - chr1_1:1246784-1246803 Msa0000220:intron 55.0%
TCCCATCTGTCCAAGGCCTT+TGG + chr1_1:1246789-1246808 None:intergenic 55.0%
TGGGACTCACACCCACTTGC+AGG - chr1_1:1247285-1247304 Msa0000220:intron 60.0%
TGGGACTCACACCCACTTGC+AGG - chr1_1:1247285-1247304 Msa0000220:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 1245196 1249299 1245196 ID=Msa0000220;Name=Msa0000220
chr1_1 mRNA 1245196 1249299 1245196 ID=Msa0000220-mRNA-1;Parent=Msa0000220;Name=Msa0000220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=215|1|1|1|1|1|5|241|395
chr1_1 exon 1245196 1245806 1245196 ID=Msa0000220-mRNA-1:exon:136;Parent=Msa0000220-mRNA-1
chr1_1 exon 1246102 1246337 1246102 ID=Msa0000220-mRNA-1:exon:135;Parent=Msa0000220-mRNA-1
chr1_1 exon 1247593 1247765 1247593 ID=Msa0000220-mRNA-1:exon:134;Parent=Msa0000220-mRNA-1
chr1_1 exon 1247869 1247919 1247869 ID=Msa0000220-mRNA-1:exon:133;Parent=Msa0000220-mRNA-1
chr1_1 exon 1248727 1249299 1248727 ID=Msa0000220-mRNA-1:exon:132;Parent=Msa0000220-mRNA-1
chr1_1 five_prime_UTR 1249085 1249299 1249085 ID=Msa0000220-mRNA-1:five_prime_utr;Parent=Msa0000220-mRNA-1
chr1_1 CDS 1248727 1249084 1248727 ID=Msa0000220-mRNA-1:cds;Parent=Msa0000220-mRNA-1
chr1_1 CDS 1247869 1247919 1247869 ID=Msa0000220-mRNA-1:cds;Parent=Msa0000220-mRNA-1
chr1_1 CDS 1247593 1247765 1247593 ID=Msa0000220-mRNA-1:cds;Parent=Msa0000220-mRNA-1
chr1_1 CDS 1246102 1246337 1246102 ID=Msa0000220-mRNA-1:cds;Parent=Msa0000220-mRNA-1
chr1_1 CDS 1245437 1245806 1245437 ID=Msa0000220-mRNA-1:cds;Parent=Msa0000220-mRNA-1
chr1_1 three_prime_UTR 1245196 1245436 1245196 ID=Msa0000220-mRNA-1:three_prime_utr;Parent=Msa0000220-mRNA-1
Gene Sequence

>Msa0000220

ATGTCTGGTGTTCTTCTTTGGGTGAATTGTGGACTCAAAGAGAATGCCATTTCCTTAATGGGTCTTGGAGGAAAAGATGTAAGAACTCAAAGGAGGTTTAGACATTGTTCTGGAATTAGCTTTGCTAGCTTTTCAAGTGCAATTGTTGAACCTACAAGATCCTCAGAGGAGAGGGTGTATGAAGTGGTGTTGAAGCAAGCAGCCCTAGTGAAGGAACAAAGAAAAGATATTAAAAAGAGAGGTTTGAATTTGGATGATAAGCCTATTGAAGGTGATTTCACCAATGGGGAACTTTTGAGTTCTGCTTATGATAGATGTGGTGATGTATGTGCTGAGTATGCAAAGACATTTTATTTAGGCACACAATTGATGACTCAAGAGAGAAGAAAAGCCATATGGGCCATTTACGTGTGGTGCAGAAGAACAGATGAGTTAGTGGATGGTCCTAATGCTTCACACATCACACCAAAGGCCTTGGACAGATGGGAACAAAGATTAACTGATGTTTTTGAAGGACGTCCTTATGATATGTATGATGCTGCACTTTCAGATACAGTTACAAAGTACCCTGTTGATATACAGCCATTTAAAGACATGATTGAAGGGATGAGGCTGGACCTGAGAAAATCAAGATACAATAACTTTGATGAACTATACCTATATTGCTACTATGTTGCTGGGACTGTGGGCCTTATGAGTGTTCCTGTAATGGGGATAGAACCACAATCCAAAGCTTCAACAGAGAGCATCTACAATGCTGCATTGGCACTTGGCATTGCTAATCAACTTACCAACATACTTAGAGACGTTGGAGAAGATGCTAGAAGAGGAAGAGTGTACCTTCCGCAAGATGAATTGGCACAAGCTGGCCTATCAGATGATGACATTTTTCGAGGCAGAGTAACCGACAAATGGCGCAATTTCATGAAGGGTCAAATAAAGAGAGCAAGGATGTTTTTTGATGAGGCAGAGAAGGGAGTTTCAGAGCTCAGTTCAGCAAGTAGATGGCCTGTTTGGGCATCTTTGCTGTTGTATAGGCAGATATTAGATTCTATTGAAGCTAATGACTATAATAACTTCACCAAACGGGCTTATGTAGGAAAAGCTAAAAAGCTCTTATCACTTCCTGTTGCTCTTGGAATAGCAACGTTTGGCCCACAAAAGTTAACCAAAATGACTACAAGATGA

Protein sequence

>Msa0000220

MSGVLLWVNCGLKENAISLMGLGGKDVRTQRRFRHCSGISFASFSSAIVEPTRSSEERVYEVVLKQAALVKEQRKDIKKRGLNLDDKPIEGDFTNGELLSSAYDRCGDVCAEYAKTFYLGTQLMTQERRKAIWAIYVWCRRTDELVDGPNASHITPKALDRWEQRLTDVFEGRPYDMYDAALSDTVTKYPVDIQPFKDMIEGMRLDLRKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIEPQSKASTESIYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFRGRVTDKWRNFMKGQIKRARMFFDEAEKGVSELSSASRWPVWASLLLYRQILDSIEANDYNNFTKRAYVGKAKKLLSLPVALGIATFGPQKLTKMTTR*