AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0035090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035090 MtrunA17_Chr1g0197371 92.424 462 10 1 1 462 1 437 0.0 877
Msa0035090 MtrunA17_Chr8g0334691 39.755 327 166 5 114 436 2 301 1.15e-67 218
Msa0035090 MtrunA17_Chr1g0187751 37.571 354 189 5 92 441 3 328 3.70e-67 218
Msa0035090 MtrunA17_Chr1g0167651 37.006 354 191 5 92 441 3 328 1.58e-65 214
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035090 AT5G58330.2 79.677 433 61 3 32 462 35 442 0.0 694
Msa0035090 AT5G58330.1 79.724 434 60 4 32 462 35 443 0.0 691
Msa0035090 AT5G58330.3 83.008 359 35 2 105 462 1 334 0.0 603
Msa0035090 AT5G56720.1 37.822 349 186 3 92 436 42 363 2.37e-66 218
Msa0035090 AT1G04410.1 38.177 351 182 5 92 436 3 324 1.76e-65 214
Msa0035090 AT5G43330.1 38.177 351 182 5 92 436 3 324 9.26e-65 212

Find 158 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATGCTGACGAGCTTTA+TGG 0.132573 1_1:+63141326 None:intergenic
TACGAGACATTATTGGATTT+TGG 0.133848 1_1:+63146189 None:intergenic
TTCTTCTTACGAGACATTAT+TGG 0.191154 1_1:+63146182 None:intergenic
TTCTTGAATTCTAAGATTCT+TGG 0.195460 1_1:-63145888 Msa0035090:five_prime_UTR
TTCCAGCTAAATTGCATATT+TGG 0.196880 1_1:+63141405 None:intergenic
CCTATTGCTCTGAAATTATT+AGG 0.203572 1_1:-63143870 Msa0035090:CDS
GCGGCTTTGCTAGACATAAA+TGG 0.224890 1_1:-63143561 Msa0035090:CDS
AAGTGTCAAATATGACAATA+TGG 0.242700 1_1:-63143058 Msa0035090:CDS
AATAATGGTTATGTAATAAA+AGG 0.243255 1_1:-63141746 Msa0035090:three_prime_UTR
TTTATGAAGAAGTTTCTAAA+AGG 0.247820 1_1:+63145961 None:intergenic
GACGGGCAACCCATCGATTC+TGG 0.258257 1_1:+63142995 None:intergenic
GCAGACAGAAGCTGAGTTAT+TGG 0.262024 1_1:-63142025 Msa0035090:intron
TTCAGAGCAATAGGTTGATT+TGG 0.265247 1_1:+63143879 None:intergenic
CTGCCTTACCTATGATTTGA+AGG 0.303691 1_1:-63145551 Msa0035090:CDS
CCTAATAATTTCAGAGCAAT+AGG 0.307670 1_1:+63143870 None:intergenic
CAAGCTTCGTAACTAGAAAT+AGG 0.308916 1_1:+63141284 None:intergenic
GCAGAATGGGCTTTGCTAAT+AGG 0.308960 1_1:-63143615 Msa0035090:CDS
CGTAGAAGACACCTGCCTTC+AGG 0.314755 1_1:+63143084 None:intergenic
TGAATGTCAAAGCAGATATA+TGG 0.326000 1_1:-63141795 Msa0035090:three_prime_UTR
TATACCACTGGAAATCCTTA+TGG 0.344085 1_1:-63142401 Msa0035090:CDS
AATGGTAATTAATTTCTTCC+AGG 0.347857 1_1:+63144076 None:intergenic
ACACACACATGGATAACTTT+GGG 0.349611 1_1:+63141552 None:intergenic
AAGTGATCAAGGATCATAAA+TGG 0.368193 1_1:-63142968 Msa0035090:CDS
CAATATTTACCTCGCCGGTT+AGG 0.371646 1_1:+63141980 None:intergenic
AACCATTATTCTACATCAAT+TGG 0.372547 1_1:+63141759 None:intergenic
TTGGTCCTTACGTTTAATAT+AGG 0.383719 1_1:+63141424 None:intergenic
ATAATGGTTATGTAATAAAA+GGG 0.384387 1_1:-63141745 Msa0035090:three_prime_UTR
GCAAAGCCCATTCTGCATCT+TGG 0.385116 1_1:+63143622 None:intergenic
GAATGAAATTACGTATTTGT+TGG 0.387266 1_1:+63146223 None:intergenic
TTGATGAAGAGAAGTGTAGA+AGG 0.388912 1_1:+63146034 None:intergenic
TACCAATTGATGTAGAATAA+TGG 0.396473 1_1:-63141761 Msa0035090:three_prime_UTR
AAAGCCGCACGCTCCATTCC+AGG 0.399549 1_1:+63143576 None:intergenic
ATTAATTACCATTGCAGTCT+CGG 0.405725 1_1:-63144066 Msa0035090:CDS
GTAGAAGACACCTGCCTTCA+GGG 0.407624 1_1:+63143085 None:intergenic
CACCTTGAAAAGTAGATGAT+TGG 0.408340 1_1:+63144025 None:intergenic
GGATTTGAAATACAAGTATA+AGG 0.409884 1_1:+63146092 None:intergenic
ATTCTGGCATTTAAGAAGTC+AGG 0.412554 1_1:+63143011 None:intergenic
CTTGAAACTTTCTAAATGTA+GGG 0.413682 1_1:-63141460 Msa0035090:three_prime_UTR
GTATTTACTTGATATAGAAT+TGG 0.414143 1_1:-63142659 Msa0035090:CDS
AATTATTGTGTTCTACAAGC+TGG 0.418187 1_1:-63141246 Msa0035090:three_prime_UTR
AACACACACATGGATAACTT+TGG 0.419395 1_1:+63141551 None:intergenic
CGGCTTTGCTAGACATAAAT+GGG 0.422655 1_1:-63143560 Msa0035090:CDS
ATTGCAGTCTCGGGTGCTGC+TGG 0.423582 1_1:-63144056 Msa0035090:CDS
AAATGTGTGGCTCACCTAAC+CGG 0.423595 1_1:-63141994 Msa0035090:CDS
TTCCTACTCCCGAGGGTGAT+TGG 0.424558 1_1:-63142723 Msa0035090:CDS
TAACTCGTTTAGATGAGAAC+AGG 0.428132 1_1:-63143219 Msa0035090:CDS
TTCTTAAATGCCAGAATCGA+TGG 0.429266 1_1:-63143005 Msa0035090:CDS
ATCCTTGATCACTTCTTTGA+CGG 0.429838 1_1:+63142977 None:intergenic
TTCAAGAAACGCTAAGTTTG+TGG 0.432420 1_1:+63145903 None:intergenic
AATGAAATTACGTATTTGTT+GGG 0.433276 1_1:+63146224 None:intergenic
ACTTGAAACTTTCTAAATGT+AGG 0.440684 1_1:-63141461 Msa0035090:three_prime_UTR
AGTGTCAAATATGACAATAT+GGG 0.441799 1_1:-63143057 Msa0035090:CDS
CAAGGATCATAAATGGTTAG+AGG 0.443116 1_1:-63142961 Msa0035090:CDS
TGAGAACAGGGCAAAATGTC+AGG 0.444147 1_1:-63143206 Msa0035090:intron
TATTAGCATTGATCCTTATG+AGG 0.445684 1_1:-63143649 Msa0035090:CDS
GCATCTTGGAACACCTCATA+AGG 0.449712 1_1:+63143636 None:intergenic
GGTTAATTGTGTTTGAGATA+AGG 0.450252 1_1:+63146290 None:intergenic
AAGAAAATGAGAAAAGATAT+AGG 0.450388 1_1:+63145988 None:intergenic
ACTCACAGCCTTCAAATCAT+AGG 0.450924 1_1:+63145543 None:intergenic
GGATCCTGTGTCTGTACAGC+TGG 0.461686 1_1:+63145604 None:intergenic
TCCTTGATCACTTCTTTGAC+GGG 0.461687 1_1:+63142978 None:intergenic
GACCAAATATGCAATTTAGC+TGG 0.466368 1_1:-63141407 Msa0035090:three_prime_UTR
ATATCTTCAGCTATTCCATA+AGG 0.466564 1_1:+63142386 None:intergenic
TTAGCTAGTTACATTTCTCC+TGG 0.468553 1_1:+63141823 None:intergenic
TTAATTACCATTGCAGTCTC+GGG 0.472464 1_1:-63144065 Msa0035090:CDS
TTATGAAGAAGTTTCTAAAA+GGG 0.474780 1_1:+63145962 None:intergenic
TGCTCTGAAATTATTAGGAT+CGG 0.475625 1_1:-63143865 Msa0035090:CDS
CAGAAGACACCATAGCAATC+AGG 0.479428 1_1:+63145571 None:intergenic
ATAGCAATCAGGCTTACTCT+TGG 0.486336 1_1:+63145582 None:intergenic
GAAATACAAGTATAAGGCTG+TGG 0.489166 1_1:+63146098 None:intergenic
GGTGCAAAGCCTCGAGGACC+TGG 0.489357 1_1:-63143594 Msa0035090:CDS
CAAGCTGACTTTGTATTGCA+AGG 0.493060 1_1:+63143373 None:intergenic
TAGCAATCAGGCTTACTCTT+GGG 0.494853 1_1:+63145583 None:intergenic
CACAACTCTCATTTCTCTCT+AGG 0.499049 1_1:-63145808 Msa0035090:CDS
ATTGTAATCTTAACAACGTA+AGG 0.500539 1_1:-63141489 Msa0035090:three_prime_UTR
GGTGTTCCAAGATGCAGAAT+GGG 0.508422 1_1:-63143628 Msa0035090:CDS
CTCTTTATTTCCTTTGCTGA+GGG 0.509334 1_1:-63143679 Msa0035090:CDS
GCTCGTCAGCATGTAATAAG+TGG 0.510640 1_1:-63141319 Msa0035090:three_prime_UTR
AGGTGTTCCAAGATGCAGAA+TGG 0.523630 1_1:-63143629 Msa0035090:CDS
CAGTATGCCGTGTCGATCAA+AGG 0.525529 1_1:-63142357 Msa0035090:intron
CAATGCCAGGTGTATACCAC+TGG 0.532941 1_1:-63142413 Msa0035090:intron
GCCCTTTCCGTCATATTCTG+AGG 0.533600 1_1:-63141605 Msa0035090:three_prime_UTR
AGTAAACATCATCCACAACT+TGG 0.534566 1_1:+63146150 None:intergenic
CCTTGGCTAATTTCTGTCGT+AGG 0.542771 1_1:+63142208 None:intergenic
ACTCTTTATTTCCTTTGCTG+AGG 0.543885 1_1:-63143680 Msa0035090:CDS
AGGTCATTGCAAGCTCTTGA+AGG 0.545237 1_1:-63143840 Msa0035090:intron
ACATTTAGAAAGTTTCAAGT+TGG 0.545610 1_1:+63141464 None:intergenic
AGGAAGAGGAGACAAAATCC+TGG 0.546374 1_1:-63144094 Msa0035090:CDS
AAAGTACAGTGATGGTGCCT+AGG 0.547922 1_1:+63145779 None:intergenic
AAGCTGACTTTGTATTGCAA+GGG 0.548231 1_1:+63143374 None:intergenic
ACCTCAGAATATGACGGAAA+GGG 0.548502 1_1:+63141604 None:intergenic
TTGTTTGATTGTTAGAGAGG+TGG 0.548629 1_1:-63142826 Msa0035090:intron
GGCCGCAATATTTACCTCGC+CGG 0.551341 1_1:+63141975 None:intergenic
TTACATTTCTCCTGGGAGCA+TGG 0.551522 1_1:+63141831 None:intergenic
GCCCGTCAAAGAAGTGATCA+AGG 0.552804 1_1:-63142979 Msa0035090:CDS
TAAAACCTATATTAAACGTA+AGG 0.553419 1_1:-63141429 Msa0035090:three_prime_UTR
CCTGGGAGCATGGTATCACC+AGG 0.553980 1_1:+63141841 None:intergenic
GAAACCTAAAATAAACGTAA+AGG 0.554388 1_1:+63141694 None:intergenic
TTCTCTCTAGGACTCTTCCT+AGG 0.556403 1_1:-63145796 Msa0035090:CDS
CAGCCTTCAAATCATAGGTA+AGG 0.557569 1_1:+63145548 None:intergenic
CATCTAAACGAGTTAAAGCA+TGG 0.559378 1_1:+63143227 None:intergenic
AGGAATGATCAAAGATCGTA+TGG 0.561984 1_1:+63142741 None:intergenic
CAATGTGTAGCTAGCCCTGA+AGG 0.566385 1_1:-63143099 Msa0035090:intron
AAGAGTAAGCCTGATTGCTA+TGG 0.566462 1_1:-63145580 Msa0035090:CDS
CGCTCCATTCCAGGTCCTCG+AGG 0.567002 1_1:+63143585 None:intergenic
TAGCTAGTTACATTTCTCCT+GGG 0.567890 1_1:+63141824 None:intergenic
ATTGCTGTTTGTGATCTACC+TGG 0.568507 1_1:-63141859 Msa0035090:CDS
AATTCTAAGATTCTTGGACA+TGG 0.568647 1_1:-63145882 Msa0035090:exon
TGTAATAAAAGGGGAAAACA+TGG 0.575545 1_1:-63141735 Msa0035090:three_prime_UTR
GTGTAGCTAGCCCTGAAGGC+AGG 0.575889 1_1:-63143095 Msa0035090:intron
CCTGGTGATACCATGCTCCC+AGG 0.576358 1_1:-63141841 Msa0035090:CDS
GCATGTTGAGTTCTGTGAAG+TGG 0.576492 1_1:+63145752 None:intergenic
TCTTAAATGCCAGAATCGAT+GGG 0.577340 1_1:-63143004 Msa0035090:CDS
TTTGATCATTCCTACTCCCG+AGG 0.577680 1_1:-63142731 Msa0035090:CDS
GTATGTGGGAACAAAGAGGA+TGG 0.578347 1_1:+63146071 None:intergenic
TACCTCAGAATATGACGGAA+AGG 0.580063 1_1:+63141603 None:intergenic
CAACAATGCAGGTGTTGCGA+TGG 0.584262 1_1:-63143712 Msa0035090:intron
AAATACAAGTATAAGGCTGT+GGG 0.584305 1_1:+63146099 None:intergenic
CTCGTCAGCATGTAATAAGT+GGG 0.587173 1_1:-63141318 Msa0035090:three_prime_UTR
GACAGAAGCTGAGTTATTGG+CGG 0.587741 1_1:-63142022 Msa0035090:CDS
CACACACATGGATAACTTTG+GGG 0.588099 1_1:+63141553 None:intergenic
AACCAATCACCCTCGGGAGT+AGG 0.588155 1_1:+63142721 None:intergenic
AAAGCCTCGAGGACCTGGAA+TGG 0.591306 1_1:-63143589 Msa0035090:CDS
TGCAGGTGTTGCGATGGAGT+TGG 0.591881 1_1:-63143706 Msa0035090:intron
TGAAATTATTAGGATCGGAA+AGG 0.596316 1_1:-63143860 Msa0035090:CDS
TTCTGGCATTTAAGAAGTCA+GGG 0.596329 1_1:+63143012 None:intergenic
AATGTCAAAGTTATAGTCGT+GGG 0.603734 1_1:-63143400 Msa0035090:CDS
ATAACAACTTCCCTCAGCAA+AGG 0.605246 1_1:+63143669 None:intergenic
AGTAGAAAACCAATCACCCT+CGG 0.605810 1_1:+63142714 None:intergenic
TTGAAACTTTCTAAATGTAG+GGG 0.608954 1_1:-63141459 Msa0035090:three_prime_UTR
AGGTGTTGCGATGGAGTTGG+AGG 0.609283 1_1:-63143703 Msa0035090:CDS
GTGTCAAATATGACAATATG+GGG 0.610500 1_1:-63143056 Msa0035090:CDS
TAATGGTTATGTAATAAAAG+GGG 0.611749 1_1:-63141744 Msa0035090:three_prime_UTR
GGGAAACCACTCAACTACTC+AGG 0.614384 1_1:-63143036 Msa0035090:CDS
GTAGAAAACCAATCACCCTC+GGG 0.619646 1_1:+63142715 None:intergenic
AACTCGTTTAGATGAGAACA+GGG 0.621950 1_1:-63143218 Msa0035090:CDS
TTGTAATCTTAACAACGTAA+GGG 0.625187 1_1:-63141488 Msa0035090:three_prime_UTR
ATGAAATTACGTATTTGTTG+GGG 0.626394 1_1:+63146225 None:intergenic
TTGATCATTCCTACTCCCGA+GGG 0.629643 1_1:-63142730 Msa0035090:CDS
CAGGGACCTGAGTAGTTGAG+TGG 0.629977 1_1:+63143030 None:intergenic
CAATGTCAAAGTTATAGTCG+TGG 0.630469 1_1:-63143401 Msa0035090:CDS
TTCCGTTTAAAACGTCCATG+TGG 0.637434 1_1:+63141520 None:intergenic
AGCAGCACCCGAGACTGCAA+TGG 0.640432 1_1:+63144058 None:intergenic
CTATATCAAGTAAATACACA+AGG 0.642591 1_1:+63142665 None:intergenic
GAGGGTATGTGGGAACAAAG+AGG 0.646699 1_1:+63146067 None:intergenic
TGGTGATTATGAACTTGTCA+AGG 0.654428 1_1:-63142250 Msa0035090:CDS
ACACTTGCCTTTGATCGACA+CGG 0.659090 1_1:+63142350 None:intergenic
AGAGTTACCTCAGAATATGA+CGG 0.661366 1_1:+63141598 None:intergenic
GGTGCCAGCTGTACAGACAC+AGG 0.672337 1_1:-63145608 Msa0035090:CDS
ACACACATGGATAACTTTGG+GGG 0.678822 1_1:+63141554 None:intergenic
CTAATAGGTGCAAAGCCTCG+AGG 0.681429 1_1:-63143600 Msa0035090:CDS
AACCCCTAAAAGAAAACACG+TGG 0.686046 1_1:-63146271 Msa0035090:five_prime_UTR
AGGACCTGGAATGGAGCGTG+CGG 0.691301 1_1:-63143580 Msa0035090:CDS
TATTCCATAAGGATTTCCAG+TGG 0.701953 1_1:+63142397 None:intergenic
GTGGTGCTAAAGTACAGTGA+TGG 0.702787 1_1:+63145771 None:intergenic
CCTACGACAGAAATTAGCCA+AGG 0.707374 1_1:-63142208 Msa0035090:intron
TGTGGCTCACCTAACCGGCG+AGG 0.716043 1_1:-63141989 Msa0035090:intron
ACAGGGAAAAGCACTCAATG+CGG 0.748480 1_1:-63143434 Msa0035090:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTGCAATTTTAAATTAAT+AGG + chr1_1:63142345-63142364 None:intergenic 15.0%
!!! TATTAATTTAAAATTGCAGT+TGG - chr1_1:63142344-63142363 Msa0035090:intron 15.0%
!!! ACAAAAAGTTTTATTCATTA+GGG - chr1_1:63145147-63145166 Msa0035090:intron 15.0%
!! AATAATGGTTATGTAATAAA+AGG - chr1_1:63145677-63145696 Msa0035090:intron 15.0%
!! ATAATGGTTATGTAATAAAA+GGG - chr1_1:63145678-63145697 Msa0035090:intron 15.0%
!! AATGAAATTACGTATTTGTT+GGG + chr1_1:63141202-63141221 None:intergenic 20.0%
!! AAGAAAATGAGAAAAGATAT+AGG + chr1_1:63141438-63141457 None:intergenic 20.0%
!!! TTATGAAGAAGTTTCTAAAA+GGG + chr1_1:63141464-63141483 None:intergenic 20.0%
!! TTTATGAAGAAGTTTCTAAA+AGG + chr1_1:63141465-63141484 None:intergenic 20.0%
!! TGGTTAATATGTTCTTTAAT+TGG - chr1_1:63141997-63142016 Msa0035090:CDS 20.0%
!! GGTTAATATGTTCTTTAATT+GGG - chr1_1:63141998-63142017 Msa0035090:CDS 20.0%
!! CATCTATATATACAATGATT+AGG + chr1_1:63142079-63142098 None:intergenic 20.0%
!! ACATTATTCAGTGTAATTAT+AGG - chr1_1:63142173-63142192 Msa0035090:intron 20.0%
!! TCATTAATTCTTATTCTTAC+TGG - chr1_1:63142255-63142274 Msa0035090:CDS 20.0%
!!! GGTTCCAAATTTTAAATTTT+TGG - chr1_1:63142639-63142658 Msa0035090:CDS 20.0%
!!! CTCACCAAAAATTTAAAATT+TGG + chr1_1:63142646-63142665 None:intergenic 20.0%
!! ATATACTATATAGATAGAAG+TGG - chr1_1:63142837-63142856 Msa0035090:intron 20.0%
!! ACTAAATCATTTGTTTCATT+TGG - chr1_1:63143224-63143243 Msa0035090:CDS 20.0%
!! AACATAAAAAATTAACTCAG+TGG + chr1_1:63143498-63143517 None:intergenic 20.0%
!!! TATAGTTAACTGTCTTTTAT+AGG + chr1_1:63143939-63143958 None:intergenic 20.0%
!!! AAATTTTTTGCAGGAATATT+TGG + chr1_1:63144176-63144195 None:intergenic 20.0%
!! CAAAAGGTAAAATTTGTAAT+TGG - chr1_1:63144505-63144524 Msa0035090:intron 20.0%
!! AATCCATGTAATTAAATATG+TGG - chr1_1:63144528-63144547 Msa0035090:intron 20.0%
!! ATTCCACATATTTAATTACA+TGG + chr1_1:63144534-63144553 None:intergenic 20.0%
!! TATTGTTAACTTATTACACA+AGG + chr1_1:63144572-63144591 None:intergenic 20.0%
!! GTATTTACTTGATATAGAAT+TGG - chr1_1:63144764-63144783 Msa0035090:intron 20.0%
!! ATTAATATATTCACCAATGT+CGG - chr1_1:63144833-63144852 Msa0035090:intron 20.0%
!!! AACTTTAAAGCTCAATTAAA+AGG - chr1_1:63144912-63144931 Msa0035090:intron 20.0%
!!! AATAAAACTTTTTGTCATAG+AGG + chr1_1:63145142-63145161 None:intergenic 20.0%
!!! GACAAAAAGTTTTATTCATT+AGG - chr1_1:63145146-63145165 Msa0035090:intron 20.0%
!! CGATAACAATTTCATATATT+TGG - chr1_1:63145268-63145287 Msa0035090:intron 20.0%
!! TAATGGTTATGTAATAAAAG+GGG - chr1_1:63145679-63145698 Msa0035090:intron 20.0%
!!! GTTTAATATAGGTTTTAAGT+TGG + chr1_1:63145991-63146010 None:intergenic 20.0%
!! TAAAACCTATATTAAACGTA+AGG - chr1_1:63145994-63146013 Msa0035090:five_prime_UTR 20.0%
!! ATGAAATTACGTATTTGTTG+GGG + chr1_1:63141201-63141220 None:intergenic 25.0%
! GAATGAAATTACGTATTTGT+TGG + chr1_1:63141203-63141222 None:intergenic 25.0%
!! GGATTTGAAATACAAGTATA+AGG + chr1_1:63141334-63141353 None:intergenic 25.0%
!!! TTCTTGAATTCTAAGATTCT+TGG - chr1_1:63141535-63141554 Msa0035090:three_prime_UTR 25.0%
! ATAAATACAGTAGAGTAACA+AGG + chr1_1:63141909-63141928 None:intergenic 25.0%
! ATGTTCTTTAATTGGGTATT+TGG - chr1_1:63142005-63142024 Msa0035090:CDS 25.0%
! TGTTCTTTAATTGGGTATTT+GGG - chr1_1:63142006-63142025 Msa0035090:CDS 25.0%
!!! AATTTTGTTATAAGGAGGAT+TGG - chr1_1:63142034-63142053 Msa0035090:intron 25.0%
!!! AAATATTTGTTGGAAGCATT+AGG + chr1_1:63143063-63143082 None:intergenic 25.0%
!! GATTTTCCTCAAATATTTGT+TGG + chr1_1:63143073-63143092 None:intergenic 25.0%
! ATTGTAACAAGTATCCTTTA+TGG - chr1_1:63143102-63143121 Msa0035090:intron 25.0%
! TTGTAACAAGTATCCTTTAT+GGG - chr1_1:63143103-63143122 Msa0035090:intron 25.0%
! AATACCATGGAAAATTTGAA+AGG + chr1_1:63143253-63143272 None:intergenic 25.0%
! CTTAACATTAAGTAATACCA+TGG + chr1_1:63143266-63143285 None:intergenic 25.0%
!! ATATACCAATTTGTTTCGTT+TGG - chr1_1:63143293-63143312 Msa0035090:intron 25.0%
! AATGGTAATTAATTTCTTCC+AGG + chr1_1:63143350-63143369 None:intergenic 25.0%
!!! TTTGAAAAGCATCAGTAATA+TGG + chr1_1:63143676-63143695 None:intergenic 25.0%
!!! TTCTGTTATTTCTTCTTCTT+TGG + chr1_1:63144281-63144300 None:intergenic 25.0%
! AAGTGTCAAATATGACAATA+TGG - chr1_1:63144365-63144384 Msa0035090:intron 25.0%
! AGTGTCAAATATGACAATAT+GGG - chr1_1:63144366-63144385 Msa0035090:intron 25.0%
! TTATTGTTTGATTGTTAGAG+AGG - chr1_1:63144594-63144613 Msa0035090:intron 25.0%
! CTATATCAAGTAAATACACA+AGG + chr1_1:63144761-63144780 None:intergenic 25.0%
! TTAATATATTCACCAATGTC+GGG - chr1_1:63144834-63144853 Msa0035090:intron 25.0%
! CAAAGACAAAAACAGTTTAT+AGG + chr1_1:63144938-63144957 None:intergenic 25.0%
! AAGCAATTCAGAAATCATAA+AGG + chr1_1:63145114-63145133 None:intergenic 25.0%
! ATTTGTATTCTCTCTTATCA+GGG - chr1_1:63145540-63145559 Msa0035090:intron 25.0%
! TACCAATTGATGTAGAATAA+TGG - chr1_1:63145662-63145681 Msa0035090:intron 25.0%
! AACCATTATTCTACATCAAT+TGG + chr1_1:63145667-63145686 None:intergenic 25.0%
! GAAACCTAAAATAAACGTAA+AGG + chr1_1:63145732-63145751 None:intergenic 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG - chr1_1:63145736-63145755 Msa0035090:CDS 25.0%
! ATTGTAATCTTAACAACGTA+AGG - chr1_1:63145934-63145953 Msa0035090:five_prime_UTR 25.0%
! TTGTAATCTTAACAACGTAA+GGG - chr1_1:63145935-63145954 Msa0035090:five_prime_UTR 25.0%
!! ACATTTAGAAAGTTTCAAGT+TGG + chr1_1:63145962-63145981 None:intergenic 25.0%
! ACTTGAAACTTTCTAAATGT+AGG - chr1_1:63145962-63145981 Msa0035090:five_prime_UTR 25.0%
! CTTGAAACTTTCTAAATGTA+GGG - chr1_1:63145963-63145982 Msa0035090:five_prime_UTR 25.0%
! TTGAAACTTTCTAAATGTAG+GGG - chr1_1:63145964-63145983 Msa0035090:five_prime_UTR 25.0%
! GGTTAATTGTGTTTGAGATA+AGG + chr1_1:63141136-63141155 None:intergenic 30.0%
! TTTCCACGTGTTTTCTTTTA+GGG + chr1_1:63141158-63141177 None:intergenic 30.0%
! TTTTCCACGTGTTTTCTTTT+AGG + chr1_1:63141159-63141178 None:intergenic 30.0%
! TTGGATTTTGGATGAATGAA+TGG + chr1_1:63141225-63141244 None:intergenic 30.0%
! TACGAGACATTATTGGATTT+TGG + chr1_1:63141237-63141256 None:intergenic 30.0%
TTCTTCTTACGAGACATTAT+TGG + chr1_1:63141244-63141263 None:intergenic 30.0%
GAAGATAAAAAACCAAGTTG+TGG - chr1_1:63141261-63141280 Msa0035090:three_prime_UTR 30.0%
AAATACAAGTATAAGGCTGT+GGG + chr1_1:63141327-63141346 None:intergenic 30.0%
AAGTGTAGAAGGAAGAAAAA+AGG + chr1_1:63141381-63141400 None:intergenic 30.0%
!! AATTCTAAGATTCTTGGACA+TGG - chr1_1:63141541-63141560 Msa0035090:three_prime_UTR 30.0%
!! AAGAGTAAAGTTACTGACTT+TGG + chr1_1:63141719-63141738 None:intergenic 30.0%
TTTGTGTCAATTAAGCTTCT+TGG - chr1_1:63141750-63141769 Msa0035090:three_prime_UTR 30.0%
TTGTGTCAATTAAGCTTCTT+GGG - chr1_1:63141751-63141770 Msa0035090:three_prime_UTR 30.0%
CTTGACTAAAAAGTAAAAGC+AGG + chr1_1:63141791-63141810 None:intergenic 30.0%
!!! TTTACTTTTTAGTCAAGTGC+AGG - chr1_1:63141794-63141813 Msa0035090:three_prime_UTR 30.0%
CTTGCTTTGTATTCAACTTA+TGG - chr1_1:63141956-63141975 Msa0035090:intron 30.0%
!! AGCAGAATTTTGTTATAAGG+AGG - chr1_1:63142029-63142048 Msa0035090:intron 30.0%
TCTCAAATTATTATCCGTGT+CGG + chr1_1:63142148-63142167 None:intergenic 30.0%
ATTGCAGTTGGTTAATATAC+AGG - chr1_1:63142356-63142375 Msa0035090:intron 30.0%
TTGCAGTTGGTTAATATACA+GGG - chr1_1:63142357-63142376 Msa0035090:intron 30.0%
TCCATAAATGATGATTGAGA+GGG - chr1_1:63142544-63142563 Msa0035090:intron 30.0%
! ATCTGAAGCATATTGTGATT+TGG - chr1_1:63142616-63142635 Msa0035090:intron 30.0%
! TCTGAAGCATATTGTGATTT+GGG - chr1_1:63142617-63142636 Msa0035090:intron 30.0%
GTGATCTTCAATTACATGTA+CGG + chr1_1:63142713-63142732 None:intergenic 30.0%
TGAAGATCACACTACAATTA+AGG - chr1_1:63142723-63142742 Msa0035090:CDS 30.0%
AGATAGAAGTGGAACTAAAT+TGG - chr1_1:63142848-63142867 Msa0035090:intron 30.0%
! AAAACCAATTGATAGCCAAA+AGG - chr1_1:63142962-63142981 Msa0035090:CDS 30.0%
! ATAATGTTCTTGAAGCCTTT+TGG + chr1_1:63142980-63142999 None:intergenic 30.0%
AAAGGCTTCAAGAACATTAT+TGG - chr1_1:63142980-63142999 Msa0035090:CDS 30.0%
ATGCTTCCAACAAATATTTG+AGG - chr1_1:63143064-63143083 Msa0035090:CDS 30.0%
! TAGCAGTTTAGGATCAAATA+TGG - chr1_1:63143135-63143154 Msa0035090:intron 30.0%
TGTATCTAGAGGAGTTAATA+TGG + chr1_1:63143186-63143205 None:intergenic 30.0%
!! CAAATGATTTAGTTCTGAGA+CGG + chr1_1:63143217-63143236 None:intergenic 30.0%
ATTAATTACCATTGCAGTCT+CGG - chr1_1:63143357-63143376 Msa0035090:intron 30.0%
!! TTCCAATCATCTACTTTTCA+AGG - chr1_1:63143396-63143415 Msa0035090:CDS 30.0%
!!! TTTTTATGTTAGCTTGCATC+TGG - chr1_1:63143508-63143527 Msa0035090:intron 30.0%
CCTAATAATTTCAGAGCAAT+AGG + chr1_1:63143556-63143575 None:intergenic 30.0%
!! CCTATTGCTCTGAAATTATT+AGG - chr1_1:63143553-63143572 Msa0035090:CDS 30.0%
!! TGCTCTGAAATTATTAGGAT+CGG - chr1_1:63143558-63143577 Msa0035090:CDS 30.0%
TGAAATTATTAGGATCGGAA+AGG - chr1_1:63143563-63143582 Msa0035090:CDS 30.0%
! TATATGAAAATGCCCGTTTT+TGG - chr1_1:63143626-63143645 Msa0035090:CDS 30.0%
ATGTTCTAATTCAACAATGC+AGG - chr1_1:63143700-63143719 Msa0035090:CDS 30.0%
!! TATTAGCATTGATCCTTATG+AGG - chr1_1:63143774-63143793 Msa0035090:intron 30.0%
AATGTCAAAGTTATAGTCGT+GGG - chr1_1:63144023-63144042 Msa0035090:intron 30.0%
TAGCAACATTAGGAACAATA+AGG + chr1_1:63144104-63144123 None:intergenic 30.0%
CTGCATTAAAATACACATGA+AGG + chr1_1:63144128-63144147 None:intergenic 30.0%
!!! AAAGCATGGAAATTTTTTGC+AGG + chr1_1:63144185-63144204 None:intergenic 30.0%
GTGTCAAATATGACAATATG+GGG - chr1_1:63144367-63144386 Msa0035090:intron 30.0%
AAGTGATCAAGGATCATAAA+TGG - chr1_1:63144455-63144474 Msa0035090:intron 30.0%
GTTCACTGAAAAAGTTCAAA+AGG - chr1_1:63144489-63144508 Msa0035090:intron 30.0%
TGGTGCACTTATTCAAAAAT+GGG - chr1_1:63144617-63144636 Msa0035090:intron 30.0%
ATATCTTCAGCTATTCCATA+AGG + chr1_1:63145040-63145059 None:intergenic 30.0%
!!! AGTTTTATTCATTAGGGAGA+TGG - chr1_1:63145153-63145172 Msa0035090:intron 30.0%
TAATGCATTTACCAATGTTC+AGG + chr1_1:63145346-63145365 None:intergenic 30.0%
CATTTGTATTCTCTCTTATC+AGG - chr1_1:63145539-63145558 Msa0035090:intron 30.0%
TTTGTATTCTCTCTTATCAG+GGG - chr1_1:63145541-63145560 Msa0035090:intron 30.0%
TGAATGTCAAAGCAGATATA+TGG - chr1_1:63145628-63145647 Msa0035090:intron 30.0%
TGTAATAAAAGGGGAAAACA+TGG - chr1_1:63145688-63145707 Msa0035090:intron 30.0%
! ACATGGCTAAATTGCATTTT+TGG - chr1_1:63145705-63145724 Msa0035090:intron 30.0%
!! TGGACCTTTACGTTTATTTT+AGG - chr1_1:63145725-63145744 Msa0035090:CDS 30.0%
TTGGTCCTTACGTTTAATAT+AGG + chr1_1:63146002-63146021 None:intergenic 30.0%
TTCCAGCTAAATTGCATATT+TGG + chr1_1:63146021-63146040 None:intergenic 30.0%
AATTATTGTGTTCTACAAGC+TGG - chr1_1:63146177-63146196 Msa0035090:five_prime_UTR 30.0%
! TTCCACGTGTTTTCTTTTAG+GGG + chr1_1:63141157-63141176 None:intergenic 35.0%
AGTAAACATCATCCACAACT+TGG + chr1_1:63141276-63141295 None:intergenic 35.0%
GAAATACAAGTATAAGGCTG+TGG + chr1_1:63141328-63141347 None:intergenic 35.0%
! AAGAAAAAAGGAGGGTATGT+GGG + chr1_1:63141369-63141388 None:intergenic 35.0%
GTAGAAGGAAGAAAAAAGGA+GGG + chr1_1:63141377-63141396 None:intergenic 35.0%
TGTAGAAGGAAGAAAAAAGG+AGG + chr1_1:63141378-63141397 None:intergenic 35.0%
! TTGATGAAGAGAAGTGTAGA+AGG + chr1_1:63141392-63141411 None:intergenic 35.0%
TTCAAGAAACGCTAAGTTTG+TGG + chr1_1:63141523-63141542 None:intergenic 35.0%
!! GGGAGCAGAATTTTGTTATA+AGG - chr1_1:63142026-63142045 Msa0035090:intron 35.0%
! TTTGTTATAAGGAGGATTGG+TGG - chr1_1:63142037-63142056 Msa0035090:intron 35.0%
! TGTAATTATAGGTGTCGTGT+CGG - chr1_1:63142184-63142203 Msa0035090:intron 35.0%
TAATGACATCCTATGAAGCA+CGG + chr1_1:63142241-63142260 None:intergenic 35.0%
TGGTTAATATACAGGGATAG+AGG - chr1_1:63142364-63142383 Msa0035090:CDS 35.0%
TAATATACAGGGATAGAGGT+CGG - chr1_1:63142368-63142387 Msa0035090:CDS 35.0%
AAACTAAAACTCTGGTATGG+GGG + chr1_1:63142522-63142541 None:intergenic 35.0%
CAAACTAAAACTCTGGTATG+GGG + chr1_1:63142523-63142542 None:intergenic 35.0%
GCAAACTAAAACTCTGGTAT+GGG + chr1_1:63142524-63142543 None:intergenic 35.0%
AGCAAACTAAAACTCTGGTA+TGG + chr1_1:63142525-63142544 None:intergenic 35.0%
TATGGAGCAAACTAAAACTC+TGG + chr1_1:63142530-63142549 None:intergenic 35.0%
CTCCATAAATGATGATTGAG+AGG - chr1_1:63142543-63142562 Msa0035090:intron 35.0%
CCATAAATGATGATTGAGAG+GGG - chr1_1:63142545-63142564 Msa0035090:intron 35.0%
CACAATTGAGAGACTGTTAA+AGG - chr1_1:63142577-63142596 Msa0035090:intron 35.0%
CTGAAGCATATTGTGATTTG+GGG - chr1_1:63142618-63142637 Msa0035090:intron 35.0%
CACAAACTGAACAAAAGAGT+AGG + chr1_1:63142908-63142927 None:intergenic 35.0%
ATCTAGAGGAGTTAATATGG+AGG + chr1_1:63143183-63143202 None:intergenic 35.0%
! GCATCCTTTCAAATTTTCCA+TGG - chr1_1:63143246-63143265 Msa0035090:CDS 35.0%
ATTGGCCAAACGAAACAAAT+TGG + chr1_1:63143301-63143320 None:intergenic 35.0%
TTAATTACCATTGCAGTCTC+GGG - chr1_1:63143358-63143377 Msa0035090:intron 35.0%
CACCTTGAAAAGTAGATGAT+TGG + chr1_1:63143401-63143420 None:intergenic 35.0%
!! TTTTCAAGGTGAGTGTATCT+TGG - chr1_1:63143410-63143429 Msa0035090:CDS 35.0%
CTAAATTGCATGGCCATTAA+AGG + chr1_1:63143473-63143492 None:intergenic 35.0%
!! TTCAGAGCAATAGGTTGATT+TGG + chr1_1:63143547-63143566 None:intergenic 35.0%
ATACACGCATACTCCAAAAA+CGG + chr1_1:63143642-63143661 None:intergenic 35.0%
! ACTCTTTATTTCCTTTGCTG+AGG - chr1_1:63143743-63143762 Msa0035090:intron 35.0%
! CTCTTTATTTCCTTTGCTGA+GGG - chr1_1:63143744-63143763 Msa0035090:intron 35.0%
! CATAAATGGGCAGATTTTTG+CGG - chr1_1:63143876-63143895 Msa0035090:CDS 35.0%
TATCTTACCATGTGTACAAC+AGG - chr1_1:63143971-63143990 Msa0035090:intron 35.0%
ATCTTACCATGTGTACAACA+GGG - chr1_1:63143972-63143991 Msa0035090:intron 35.0%
CAATGTCAAAGTTATAGTCG+TGG - chr1_1:63144022-63144041 Msa0035090:intron 35.0%
! AAGCTGACTTTGTATTGCAA+GGG + chr1_1:63144052-63144071 None:intergenic 35.0%
ACATGAAGGTTAGCAACATT+AGG + chr1_1:63144114-63144133 None:intergenic 35.0%
CATCTAAACGAGTTAAAGCA+TGG + chr1_1:63144199-63144218 None:intergenic 35.0%
TAACTCGTTTAGATGAGAAC+AGG - chr1_1:63144204-63144223 Msa0035090:intron 35.0%
AACTCGTTTAGATGAGAACA+GGG - chr1_1:63144205-63144224 Msa0035090:intron 35.0%
TTCTGGCATTTAAGAAGTCA+GGG + chr1_1:63144414-63144433 None:intergenic 35.0%
ATTCTGGCATTTAAGAAGTC+AGG + chr1_1:63144415-63144434 None:intergenic 35.0%
TTCTTAAATGCCAGAATCGA+TGG - chr1_1:63144418-63144437 Msa0035090:intron 35.0%
TCTTAAATGCCAGAATCGAT+GGG - chr1_1:63144419-63144438 Msa0035090:intron 35.0%
ATCCTTGATCACTTCTTTGA+CGG + chr1_1:63144449-63144468 None:intergenic 35.0%
CAAGGATCATAAATGGTTAG+AGG - chr1_1:63144462-63144481 Msa0035090:intron 35.0%
TTGTTTGATTGTTAGAGAGG+TGG - chr1_1:63144597-63144616 Msa0035090:intron 35.0%
GTGGTGCACTTATTCAAAAA+TGG - chr1_1:63144616-63144635 Msa0035090:intron 35.0%
GGTGCACTTATTCAAAAATG+GGG - chr1_1:63144618-63144637 Msa0035090:intron 35.0%
AGGAATGATCAAAGATCGTA+TGG + chr1_1:63144685-63144704 None:intergenic 35.0%
TTGCAATTACATACAATGCC+AGG - chr1_1:63144997-63145016 Msa0035090:intron 35.0%
TATACCACTGGAAATCCTTA+TGG - chr1_1:63145022-63145041 Msa0035090:intron 35.0%
TATTCCATAAGGATTTCCAG+TGG + chr1_1:63145029-63145048 None:intergenic 35.0%
TGGTGATTATGAACTTGTCA+AGG - chr1_1:63145173-63145192 Msa0035090:intron 35.0%
TAGCTAGTTACATTTCTCCT+GGG + chr1_1:63145602-63145621 None:intergenic 35.0%
TTAGCTAGTTACATTTCTCC+TGG + chr1_1:63145603-63145622 None:intergenic 35.0%
AGAGTTACCTCAGAATATGA+CGG + chr1_1:63145828-63145847 None:intergenic 35.0%
ACACACACATGGATAACTTT+GGG + chr1_1:63145874-63145893 None:intergenic 35.0%
AACACACACATGGATAACTT+TGG + chr1_1:63145875-63145894 None:intergenic 35.0%
GACCAAATATGCAATTTAGC+TGG - chr1_1:63146016-63146035 Msa0035090:five_prime_UTR 35.0%
CAAGCTTCGTAACTAGAAAT+AGG + chr1_1:63146142-63146161 None:intergenic 35.0%
AACCCCTAAAAGAAAACACG+TGG - chr1_1:63141152-63141171 Msa0035090:three_prime_UTR 40.0%
! GAAGAAAAAAGGAGGGTATG+TGG + chr1_1:63141370-63141389 None:intergenic 40.0%
CACAACTCTCATTTCTCTCT+AGG - chr1_1:63141615-63141634 Msa0035090:three_prime_UTR 40.0%
TAGCAATCAGGCTTACTCTT+GGG + chr1_1:63141843-63141862 None:intergenic 40.0%
ATAGCAATCAGGCTTACTCT+TGG + chr1_1:63141844-63141863 None:intergenic 40.0%
AAGAGTAAGCCTGATTGCTA+TGG - chr1_1:63141843-63141862 Msa0035090:CDS 40.0%
CTGCCTTACCTATGATTTGA+AGG - chr1_1:63141872-63141891 Msa0035090:intron 40.0%
CAGCCTTCAAATCATAGGTA+AGG + chr1_1:63141878-63141897 None:intergenic 40.0%
ACTCACAGCCTTCAAATCAT+AGG + chr1_1:63141883-63141902 None:intergenic 40.0%
!! GGCTTTAGTGCATGATTTTG+TGG - chr1_1:63141977-63141996 Msa0035090:intron 40.0%
GTGTTCATGTCGGTGTATTA+GGG + chr1_1:63142106-63142125 None:intergenic 40.0%
AGTGTTCATGTCGGTGTATT+AGG + chr1_1:63142107-63142126 None:intergenic 40.0%
TAATACACCGACATGAACAC+TGG - chr1_1:63142106-63142125 Msa0035090:intron 40.0%
AACTAAAACTCTGGTATGGG+GGG + chr1_1:63142521-63142540 None:intergenic 40.0%
CCCCTCTCAATCATCATTTA+TGG + chr1_1:63142548-63142567 None:intergenic 40.0%
ATGACTGAAATCGTCTGATG+CGG - chr1_1:63142681-63142700 Msa0035090:CDS 40.0%
!! GAAGCCTTTTGGCTATCAAT+TGG + chr1_1:63142969-63142988 None:intergenic 40.0%
CGGTGAATCTTTGTATCTAG+AGG + chr1_1:63143197-63143216 None:intergenic 40.0%
TCCTCTTCCTGTAAACACAT+TGG + chr1_1:63143319-63143338 None:intergenic 40.0%
TCAGACTCAGTCACCTTTAA+TGG - chr1_1:63143457-63143476 Msa0035090:intron 40.0%
CTCAGTGGAACTAAATTGCA+TGG + chr1_1:63143483-63143502 None:intergenic 40.0%
! CTTGCATCTGGTGAAGTTTT+TGG - chr1_1:63143520-63143539 Msa0035090:intron 40.0%
TACACGCATACTCCAAAAAC+GGG + chr1_1:63143641-63143660 None:intergenic 40.0%
TTGGAGTATGCGTGTATCAT+AGG - chr1_1:63143645-63143664 Msa0035090:CDS 40.0%
ATAACAACTTCCCTCAGCAA+AGG + chr1_1:63143757-63143776 None:intergenic 40.0%
CGGCTTTGCTAGACATAAAT+GGG - chr1_1:63143863-63143882 Msa0035090:CDS 40.0%
! TTTTTGCGGAGCAGGTAAAT+TGG - chr1_1:63143890-63143909 Msa0035090:CDS 40.0%
! CAAGCTGACTTTGTATTGCA+AGG + chr1_1:63144053-63144072 None:intergenic 40.0%
CTTGCAATACAAAGTCAGCT+TGG - chr1_1:63144051-63144070 Msa0035090:CDS 40.0%
TCCTTGATCACTTCTTTGAC+GGG + chr1_1:63144448-63144467 None:intergenic 40.0%
AGTAGAAAACCAATCACCCT+CGG + chr1_1:63144712-63144731 None:intergenic 40.0%
AAATACACGTGAATGCGCAT+GGG + chr1_1:63144861-63144880 None:intergenic 40.0%
AAAATACACGTGAATGCGCA+TGG + chr1_1:63144862-63144881 None:intergenic 40.0%
TATTCAGTGTGCCTGAACAT+TGG - chr1_1:63145332-63145351 Msa0035090:intron 40.0%
ATTGGCGGAGAAAAAATGTG+TGG - chr1_1:63145416-63145435 Msa0035090:intron 40.0%
!! ATTGCTGTTTGTGATCTACC+TGG - chr1_1:63145564-63145583 Msa0035090:CDS 40.0%
! ACCTCAGAATATGACGGAAA+GGG + chr1_1:63145822-63145841 None:intergenic 40.0%
! TACCTCAGAATATGACGGAA+AGG + chr1_1:63145823-63145842 None:intergenic 40.0%
ACACACATGGATAACTTTGG+GGG + chr1_1:63145872-63145891 None:intergenic 40.0%
CACACACATGGATAACTTTG+GGG + chr1_1:63145873-63145892 None:intergenic 40.0%
GGCTAACAAAAACACACACA+TGG + chr1_1:63145885-63145904 None:intergenic 40.0%
!! GTGTGTTTTTGTTAGCCACA+TGG - chr1_1:63145888-63145907 Msa0035090:five_prime_UTR 40.0%
!! AGCCACATGGACGTTTTAAA+CGG - chr1_1:63145901-63145920 Msa0035090:five_prime_UTR 40.0%
! TTCCGTTTAAAACGTCCATG+TGG + chr1_1:63145906-63145925 None:intergenic 40.0%
TTACATGCTGACGAGCTTTA+TGG + chr1_1:63146100-63146119 None:intergenic 40.0%
CTCGTCAGCATGTAATAAGT+GGG - chr1_1:63146105-63146124 Msa0035090:five_prime_UTR 40.0%
GTATGTGGGAACAAAGAGGA+TGG + chr1_1:63141355-63141374 None:intergenic 45.0%
!! TTCTCTCTAGGACTCTTCCT+AGG - chr1_1:63141627-63141646 Msa0035090:three_prime_UTR 45.0%
! AAAGTACAGTGATGGTGCCT+AGG + chr1_1:63141647-63141666 None:intergenic 45.0%
! GTGGTGCTAAAGTACAGTGA+TGG + chr1_1:63141655-63141674 None:intergenic 45.0%
GCATGTTGAGTTCTGTGAAG+TGG + chr1_1:63141674-63141693 None:intergenic 45.0%
CAGAAGACACCATAGCAATC+AGG + chr1_1:63141855-63141874 None:intergenic 45.0%
AGGGATAGAGGTCGGTAATA+TGG - chr1_1:63142376-63142395 Msa0035090:CDS 45.0%
AGTAGCAGTTGTCACGATTG+CGG - chr1_1:63142409-63142428 Msa0035090:intron 45.0%
ACTAAAACTCTGGTATGGGG+GGG + chr1_1:63142520-63142539 None:intergenic 45.0%
CAATATTGCAGCCGCAATAG+CGG - chr1_1:63142777-63142796 Msa0035090:CDS 45.0%
AATATTGCAGCCGCAATAGC+GGG - chr1_1:63142778-63142797 Msa0035090:CDS 45.0%
GCTAAGACAGCAACCCATAA+AGG + chr1_1:63143119-63143138 None:intergenic 45.0%
GGTTGCTGTCTTAGCAGTTT+AGG - chr1_1:63143124-63143143 Msa0035090:intron 45.0%
CGTTTGGCCAATGTGTTTAC+AGG - chr1_1:63143309-63143328 Msa0035090:intron 45.0%
GCCAATGTGTTTACAGGAAG+AGG - chr1_1:63143315-63143334 Msa0035090:intron 45.0%
AGGAAGAGGAGACAAAATCC+TGG - chr1_1:63143329-63143348 Msa0035090:intron 45.0%
AGGTCATTGCAAGCTCTTGA+AGG - chr1_1:63143583-63143602 Msa0035090:CDS 45.0%
GCATCTTGGAACACCTCATA+AGG + chr1_1:63143790-63143809 None:intergenic 45.0%
AGGTGTTCCAAGATGCAGAA+TGG - chr1_1:63143794-63143813 Msa0035090:intron 45.0%
GGTGTTCCAAGATGCAGAAT+GGG - chr1_1:63143795-63143814 Msa0035090:intron 45.0%
! GCAGAATGGGCTTTGCTAAT+AGG - chr1_1:63143808-63143827 Msa0035090:intron 45.0%
GCGGCTTTGCTAGACATAAA+TGG - chr1_1:63143862-63143881 Msa0035090:CDS 45.0%
! GCTTTTCCCTGTTGTACACA+TGG + chr1_1:63143981-63144000 None:intergenic 45.0%
!! ACAGGGAAAAGCACTCAATG+CGG - chr1_1:63143989-63144008 Msa0035090:intron 45.0%
TGAGAACAGGGCAAAATGTC+AGG - chr1_1:63144217-63144236 Msa0035090:intron 45.0%
TTTGATCATTCCTACTCCCG+AGG - chr1_1:63144692-63144711 Msa0035090:intron 45.0%
TTGATCATTCCTACTCCCGA+GGG - chr1_1:63144693-63144712 Msa0035090:intron 45.0%
GTAGAAAACCAATCACCCTC+GGG + chr1_1:63144711-63144730 None:intergenic 45.0%
!!! GAGGGTGATTGGTTTTCTAC+TGG - chr1_1:63144711-63144730 Msa0035090:intron 45.0%
GATTTCCAGTGGTATACACC+TGG + chr1_1:63145018-63145037 None:intergenic 45.0%
ACACTTGCCTTTGATCGACA+CGG + chr1_1:63145076-63145095 None:intergenic 45.0%
CCTTGGCTAATTTCTGTCGT+AGG + chr1_1:63145218-63145237 None:intergenic 45.0%
CCTACGACAGAAATTAGCCA+AGG - chr1_1:63145215-63145234 Msa0035090:intron 45.0%
CTCAAGTTTCAGACTCACCT+TGG + chr1_1:63145235-63145254 None:intergenic 45.0%
GCAGACAGAAGCTGAGTTAT+TGG - chr1_1:63145398-63145417 Msa0035090:intron 45.0%
GACAGAAGCTGAGTTATTGG+CGG - chr1_1:63145401-63145420 Msa0035090:intron 45.0%
AAATGTGTGGCTCACCTAAC+CGG - chr1_1:63145429-63145448 Msa0035090:intron 45.0%
! CAATATTTACCTCGCCGGTT+AGG + chr1_1:63145446-63145465 None:intergenic 45.0%
AACCGGCGAGGTAAATATTG+CGG - chr1_1:63145446-63145465 Msa0035090:intron 45.0%
TTACATTTCTCCTGGGAGCA+TGG + chr1_1:63145595-63145614 None:intergenic 45.0%
CTCTGTCAAAAACGTCCATG+TGG - chr1_1:63145844-63145863 Msa0035090:CDS 45.0%
GCTCGTCAGCATGTAATAAG+TGG - chr1_1:63146104-63146123 Msa0035090:five_prime_UTR 45.0%
! GAGGGTATGTGGGAACAAAG+AGG + chr1_1:63141359-63141378 None:intergenic 50.0%
GTCGTGTCCAGTGTTCATGT+CGG + chr1_1:63142116-63142135 None:intergenic 50.0%
! TATTATCCGTGTCGGCGTGT+CGG + chr1_1:63142140-63142159 None:intergenic 50.0%
! TATAGGTGTCGTGTCGGTGT+CGG - chr1_1:63142190-63142209 Msa0035090:intron 50.0%
TGTCACGATTGCGGTCATTG+TGG - chr1_1:63142418-63142437 Msa0035090:intron 50.0%
ATTAAGGTGTGACGCCGTTG+AGG - chr1_1:63142739-63142758 Msa0035090:CDS 50.0%
TGTTGTGGTAGCCTCCTCAA+CGG + chr1_1:63142756-63142775 None:intergenic 50.0%
! CGGCTGCAATATTGCTGTTG+TGG + chr1_1:63142771-63142790 None:intergenic 50.0%
! GACTGAGTCTGAGACTGCAA+TGG + chr1_1:63143449-63143468 None:intergenic 50.0%
! CAACAATGCAGGTGTTGCGA+TGG - chr1_1:63143711-63143730 Msa0035090:intron 50.0%
GCAAAGCCCATTCTGCATCT+TGG + chr1_1:63143804-63143823 None:intergenic 50.0%
CTAATAGGTGCAAAGCCTCG+AGG - chr1_1:63143823-63143842 Msa0035090:intron 50.0%
!! CTTCAGGGCTAGCTACACAT+TGG + chr1_1:63144326-63144345 None:intergenic 50.0%
CAATGTGTAGCTAGCCCTGA+AGG - chr1_1:63144324-63144343 Msa0035090:intron 50.0%
GTAGAAGACACCTGCCTTCA+GGG + chr1_1:63144341-63144360 None:intergenic 50.0%
GGGAAACCACTCAACTACTC+AGG - chr1_1:63144387-63144406 Msa0035090:intron 50.0%
GCCCGTCAAAGAAGTGATCA+AGG - chr1_1:63144444-63144463 Msa0035090:intron 50.0%
CAATGCCAGGTGTATACCAC+TGG - chr1_1:63145010-63145029 Msa0035090:intron 50.0%
! CAGTATGCCGTGTCGATCAA+AGG - chr1_1:63145066-63145085 Msa0035090:intron 50.0%
AAATATTGCGGCCCGAATCG+CGG - chr1_1:63145458-63145477 Msa0035090:intron 50.0%
TGTTTGCGTAGACCGCGATT+CGG + chr1_1:63145473-63145492 None:intergenic 50.0%
GCCCTTTCCGTCATATTCTG+AGG - chr1_1:63145818-63145837 Msa0035090:CDS 50.0%
!! ATAACTTTGGGGGTGCCACA+TGG + chr1_1:63145862-63145881 None:intergenic 50.0%
GGATCCTGTGTCTGTACAGC+TGG + chr1_1:63141822-63141841 None:intergenic 55.0%
AACTCTGGTATGGGGGGGTA+CGG + chr1_1:63142515-63142534 None:intergenic 55.0%
! TGCAGGTGTTGCGATGGAGT+TGG - chr1_1:63143717-63143736 Msa0035090:intron 55.0%
! AGGTGTTGCGATGGAGTTGG+AGG - chr1_1:63143720-63143739 Msa0035090:intron 55.0%
AAAGCCTCGAGGACCTGGAA+TGG - chr1_1:63143834-63143853 Msa0035090:intron 55.0%
! TGGGCAGATTTTTGCGGAGC+AGG - chr1_1:63143882-63143901 Msa0035090:CDS 55.0%
CGTAGAAGACACCTGCCTTC+AGG + chr1_1:63144342-63144361 None:intergenic 55.0%
CAGGGACCTGAGTAGTTGAG+TGG + chr1_1:63144396-63144415 None:intergenic 55.0%
TTCCTACTCCCGAGGGTGAT+TGG - chr1_1:63144700-63144719 Msa0035090:intron 55.0%
AACCAATCACCCTCGGGAGT+AGG + chr1_1:63144705-63144724 None:intergenic 55.0%
GGCCGCAATATTTACCTCGC+CGG + chr1_1:63145451-63145470 None:intergenic 55.0%
GTTTGCGTAGACCGCGATTC+GGG + chr1_1:63145472-63145491 None:intergenic 55.0%
GGTGCCAGCTGTACAGACAC+AGG - chr1_1:63141815-63141834 Msa0035090:exon 60.0%
!! GAGGAGCGTCCGTGCTTCAT+AGG - chr1_1:63142229-63142248 Msa0035090:CDS 60.0%
AAGGTGTGACGCCGTTGAGG+AGG - chr1_1:63142742-63142761 Msa0035090:CDS 60.0%
AGCAGCACCCGAGACTGCAA+TGG + chr1_1:63143368-63143387 None:intergenic 60.0%
! ATTGCAGTCTCGGGTGCTGC+TGG - chr1_1:63143367-63143386 Msa0035090:intron 60.0%
AGGACCTGGAATGGAGCGTG+CGG - chr1_1:63143843-63143862 Msa0035090:CDS 60.0%
AAAGCCGCACGCTCCATTCC+AGG + chr1_1:63143850-63143869 None:intergenic 60.0%
GTGTAGCTAGCCCTGAAGGC+AGG - chr1_1:63144328-63144347 Msa0035090:intron 60.0%
!! GACGGGCAACCCATCGATTC+TGG + chr1_1:63144431-63144450 None:intergenic 60.0%
ATGCGCATGGGTCCCGACAT+TGG + chr1_1:63144849-63144868 None:intergenic 60.0%
! CCTGGGAGCATGGTATCACC+AGG + chr1_1:63145585-63145604 None:intergenic 60.0%
CCTGGTGATACCATGCTCCC+AGG - chr1_1:63145582-63145601 Msa0035090:CDS 60.0%
ACGACACCGACACGCCGACA+CGG - chr1_1:63142131-63142150 Msa0035090:intron 65.0%
CGGACACGCGTCCTAGTCTG+AGG - chr1_1:63142210-63142229 Msa0035090:CDS 65.0%
GCACGGACGCTCCTCAGACT+AGG + chr1_1:63142224-63142243 None:intergenic 65.0%
! TCTGGTATGGGGGGGTACGG+TGG + chr1_1:63142512-63142531 None:intergenic 65.0%
!! TGCAGCCGCAATAGCGGGTG+CGG - chr1_1:63142783-63142802 Msa0035090:CDS 65.0%
GCAGTCCGCACCCGCTATTG+CGG + chr1_1:63142791-63142810 None:intergenic 65.0%
GGTGCAAAGCCTCGAGGACC+TGG - chr1_1:63143829-63143848 Msa0035090:intron 65.0%
CGCTCCATTCCAGGTCCTCG+AGG + chr1_1:63143841-63143860 None:intergenic 65.0%
TGTGGCTCACCTAACCGGCG+AGG - chr1_1:63145434-63145453 Msa0035090:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 63141122 63146323 63141122 ID=Msa0035090;Name=Msa0035090
chr1_1 mRNA 63141122 63146323 63141122 ID=Msa0035090-mRNA-1;Parent=Msa0035090;Name=Msa0035090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=438|0.91|0.92|1|1|1|13|709|462
chr1_1 exon 63141122 63141884 63141122 ID=Msa0035090-mRNA-1:exon:20070;Parent=Msa0035090-mRNA-1
chr1_1 exon 63141990 63142043 63141990 ID=Msa0035090-mRNA-1:exon:20069;Parent=Msa0035090-mRNA-1
chr1_1 exon 63142209 63142277 63142209 ID=Msa0035090-mRNA-1:exon:20068;Parent=Msa0035090-mRNA-1
chr1_1 exon 63142358 63142426 63142358 ID=Msa0035090-mRNA-1:exon:20067;Parent=Msa0035090-mRNA-1
chr1_1 exon 63142636 63142833 63142636 ID=Msa0035090-mRNA-1:exon:20066;Parent=Msa0035090-mRNA-1
chr1_1 exon 63142935 63143111 63142935 ID=Msa0035090-mRNA-1:exon:20065;Parent=Msa0035090-mRNA-1
chr1_1 exon 63143207 63143297 63143207 ID=Msa0035090-mRNA-1:exon:20064;Parent=Msa0035090-mRNA-1
chr1_1 exon 63143382 63143452 63143382 ID=Msa0035090-mRNA-1:exon:20063;Parent=Msa0035090-mRNA-1
chr1_1 exon 63143542 63143723 63143542 ID=Msa0035090-mRNA-1:exon:20062;Parent=Msa0035090-mRNA-1
chr1_1 exon 63143841 63143925 63143841 ID=Msa0035090-mRNA-1:exon:20061;Parent=Msa0035090-mRNA-1
chr1_1 exon 63144028 63144114 63144028 ID=Msa0035090-mRNA-1:exon:20060;Parent=Msa0035090-mRNA-1
chr1_1 exon 63145549 63145639 63145549 ID=Msa0035090-mRNA-1:exon:20059;Parent=Msa0035090-mRNA-1
chr1_1 exon 63145725 63146323 63145725 ID=Msa0035090-mRNA-1:exon:20058;Parent=Msa0035090-mRNA-1
chr1_1 five_prime_UTR 63145886 63146323 63145886 ID=Msa0035090-mRNA-1:five_prime_utr;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63145725 63145885 63145725 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63145549 63145639 63145549 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63144028 63144114 63144028 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63143841 63143925 63143841 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63143542 63143723 63143542 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63143382 63143452 63143382 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63143207 63143297 63143207 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63142935 63143111 63142935 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63142636 63142833 63142636 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63142358 63142426 63142358 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63142209 63142277 63142209 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63141990 63142043 63141990 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 CDS 63141831 63141884 63141831 ID=Msa0035090-mRNA-1:cds;Parent=Msa0035090-mRNA-1
chr1_1 three_prime_UTR 63141122 63141830 63141122 ID=Msa0035090-mRNA-1:three_prime_utr;Parent=Msa0035090-mRNA-1
Gene Sequence

>Msa0035090

ATGGCTCTGACACAGTTAAACAACACTTGCTCAAAAACTCAACTTCACTCATCATCACAACTCTCATTTCTCTCTAGGACTCTTCCTAGGCACCATCACTGTACTTTAGCACCACTTCACAGAACTCAACATGCTAGAATTTCTTGTTCTGTTGCACCAAATCAAGTGCAGGTGCCAGCTGTACAGACACAGGATCCCAAGAGTAAGCCTGATTGCTATGGTGTCTTCTGCCTTACCTATGATTTGAAGGCTGAAGAGGAGACAAAATCCTGGAAGAAATTAATTACCATTGCAGTCTCGGGTGCTGCTGGAATGATTTCCAATCATCTACTTTTCAAGCTTGCATCTGGTGAAGTTTTTGGTCCAAATCAACCTATTGCTCTGAAATTATTAGGATCGGAAAGGTCATTGCAAGCTCTTGAAGGTGTTGCGATGGAGTTGGAGGACTCTTTATTTCCTTTGCTGAGGGAAGTTGTTATTAGCATTGATCCTTATGAGGTGTTCCAAGATGCAGAATGGGCTTTGCTAATAGGTGCAAAGCCTCGAGGACCTGGAATGGAGCGTGCGGCTTTGCTAGACATAAATGGGCAGATTTTTGCGGAGCAGGGAAAAGCACTCAATGCGGTTGCATCTCGCAATGTCAAAGTTATAGTCGTGGGAAACCCTTGCAATACAAATGCATTAATATGCTTGAAGAATGCTCCAAATATTCCTGCAAAAAATTTCCATGCTTTAACTCGTTTAGATGAGAACAGGGCAAAATGTCAGCTAGCCCTGAAGGCAGGTGTCTTCTACGATAAAGTGTCAAATATGACAATATGGGGAAACCACTCAACTACTCAGGTCCCTGACTTCTTAAATGCCAGAATCGATGGGTTGCCCGTCAAAGAAGTGATCAAGGATCATAAATGGTTAGAGGAAGAGTTCACTGAAAAAGTTCAAAAGAGAGGTGGTGCACTTATTCAAAAATGGGGAAGATCATCTGCTGCATCGACTTCTGTGTCTATAGTTGATGCCATACGATCTTTGATCATTCCTACTCCCGAGGGTGATTGGTTTTCTACTGGTGTAAGTTTGTATTTCTTAAACAACCTTGTGTATTTACTTGATATAGAATTGGATGATCTTTTCAGAAAGATGCAAGTGTATACCACTGGAAATCCTTATGGAATAGCTGAAGATATTGTTTTCAGTATGCCGTGTCGATCAAAGGGAGATGGTGATTATGAACTTGTCAAGGATGTTATATTTGATGACTACCTACGACAGAAATTAGCCAAGACAGAAGCTGAGTTATTGGCGGAGAAAAAATGTGTGGCTCACCTAACCGGCGAGGGGATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCAGGAGAAATGTAA

Protein sequence

>Msa0035090

MALTQLNNTCSKTQLHSSSQLSFLSRTLPRHHHCTLAPLHRTQHARISCSVAPNQVQVPAVQTQDPKSKPDCYGVFCLTYDLKAEEETKSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGMERAALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDHKWLEEEFTEKVQKRGGALIQKWGRSSAASTSVSIVDAIRSLIIPTPEGDWFSTGVSLYFLNNLVYLLDIELDDLFRKMQVYTTGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM*