AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130120 MtrunA17_Chr1g0197371 92.208 462 11 1 1 462 1 437 0.0 876
Msa0130120 MtrunA17_Chr8g0334691 39.755 327 166 5 114 436 2 301 1.17e-67 218
Msa0130120 MtrunA17_Chr1g0187751 37.571 354 189 5 92 441 3 328 3.18e-67 218
Msa0130120 MtrunA17_Chr1g0167651 37.006 354 191 5 92 441 3 328 1.16e-65 214
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130120 AT5G58330.2 79.446 433 62 3 32 462 35 442 0.0 693
Msa0130120 AT5G58330.1 79.724 434 60 4 32 462 35 443 0.0 692
Msa0130120 AT5G58330.3 83.008 359 35 2 105 462 1 334 0.0 603
Msa0130120 AT5G56720.1 37.822 349 186 3 92 436 42 363 2.04e-66 218
Msa0130120 AT1G04410.1 38.177 351 182 5 92 436 3 324 1.61e-65 214
Msa0130120 AT5G43330.1 38.177 351 182 5 92 436 3 324 9.56e-65 212

Find 158 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATGCTGACGAGCTTTA+TGG 0.132573 1_3:-60171069 None:intergenic
TACGAGACATTATTGGATTT+TGG 0.133848 1_3:-60166205 Msa0130110:intron
TTCTTCTTACGAGACATTAT+TGG 0.191154 1_3:-60166212 Msa0130110:intron
TTCCAGCTAAATTGCATATT+TGG 0.196880 1_3:-60170990 None:intergenic
CCTATTGCTCTGAAATTATT+AGG 0.203572 1_3:+60168525 Msa0130120:CDS
TTCTTGAATTCTAAGATTCT+TGG 0.206833 1_3:+60166507 Msa0130120:five_prime_UTR
GCGGCTTTGCTAGACATAAA+TGG 0.224890 1_3:+60168834 Msa0130120:CDS
AAGTGTCAAATATGACAATA+TGG 0.242700 1_3:+60169337 Msa0130120:CDS
AATAATGGTTATGTAATAAA+AGG 0.243255 1_3:+60170649 Msa0130120:three_prime_UTR
TTTATGAAGAAGTTTCTAAA+AGG 0.247820 1_3:-60166434 None:intergenic
AATTCTAAGATTCTTGGATA+TGG 0.255559 1_3:+60166513 Msa0130120:exon
GACGGGCAACCCATCGATTC+TGG 0.258257 1_3:-60169400 None:intergenic
GCAGACAGAAGCTGAGTTAT+TGG 0.262024 1_3:+60170370 Msa0130120:intron
TTCAGAGCAATAGGTTGATT+TGG 0.265247 1_3:-60168516 None:intergenic
CTGCCTTACCTATGATTTGA+AGG 0.303691 1_3:+60166845 Msa0130120:CDS
CCTAATAATTTCAGAGCAAT+AGG 0.307670 1_3:-60168525 None:intergenic
CAAGCTTCGTAACTAGAAAT+AGG 0.308916 1_3:-60171111 None:intergenic
GCAGAATGGGCTTTGCTAAT+AGG 0.308960 1_3:+60168780 Msa0130120:CDS
CGTAGAAGACACCTGCCTTC+AGG 0.314755 1_3:-60169311 None:intergenic
TGAATGTCAAAGCAGATATA+TGG 0.326000 1_3:+60170600 Msa0130120:three_prime_UTR
TATACCACTGGAAATCCTTA+TGG 0.344085 1_3:+60169994 Msa0130120:CDS
AATGGTAATTAATTTCTTCC+AGG 0.347857 1_3:-60168319 None:intergenic
ACACACACATGGATAACTTT+GGG 0.349611 1_3:-60170843 None:intergenic
AAGTGATCAAGGATCATAAA+TGG 0.368193 1_3:+60169427 Msa0130120:CDS
CAATATTTACCTCGCCGGTT+AGG 0.371646 1_3:-60170415 None:intergenic
AACCATTATTCTACATCAAT+TGG 0.372547 1_3:-60170636 None:intergenic
TTGGTCCTTACGTTTAATAT+AGG 0.383719 1_3:-60170971 None:intergenic
ATAATGGTTATGTAATAAAA+GGG 0.384387 1_3:+60170650 Msa0130120:three_prime_UTR
GCAAAGCCCATTCTGCATCT+TGG 0.385116 1_3:-60168773 None:intergenic
GAATGAAATTACGTATTTGT+TGG 0.387266 1_3:-60166171 Msa0130110:intron
TTGATGAAGAGAAGTGTAGA+AGG 0.388912 1_3:-60166361 Msa0130110:CDS
TACCAATTGATGTAGAATAA+TGG 0.396473 1_3:+60170634 Msa0130120:three_prime_UTR
AAAGCCGCACGCTCCATTCC+AGG 0.399549 1_3:-60168819 None:intergenic
ATTAATTACCATTGCAGTCT+CGG 0.405725 1_3:+60168329 Msa0130120:CDS
GTAGAAGACACCTGCCTTCA+GGG 0.407624 1_3:-60169310 None:intergenic
CACCTTGAAAAGTAGATGAT+TGG 0.408340 1_3:-60168370 None:intergenic
AATTATTGTGTTCTACAAGA+TGG 0.410425 1_3:+60171149 Msa0130120:three_prime_UTR
GGATTTGAAATACAAGTATA+AGG 0.412323 1_3:-60166302 Msa0130110:intron
ATTCTGGCATTTAAGAAGTC+AGG 0.412554 1_3:-60169384 None:intergenic
CTTGAAACTTTCTAAATGTA+GGG 0.413682 1_3:+60170935 Msa0130120:three_prime_UTR
GTATTTACTTGATATAGAAT+TGG 0.414143 1_3:+60169736 Msa0130120:CDS
AACACACACATGGATAACTT+TGG 0.419395 1_3:-60170844 None:intergenic
CGGCTTTGCTAGACATAAAT+GGG 0.422655 1_3:+60168835 Msa0130120:CDS
ATTGCAGTCTCGGGTGCTGC+TGG 0.423582 1_3:+60168339 Msa0130120:CDS
AAATGTGTGGCTCACCTAAC+CGG 0.423595 1_3:+60170401 Msa0130120:CDS
TTCCTACTCCCGAGGGTGAT+TGG 0.424558 1_3:+60169672 Msa0130120:CDS
TAACTCGTTTAGATGAGAAC+AGG 0.428132 1_3:+60169176 Msa0130120:CDS
TTCTTAAATGCCAGAATCGA+TGG 0.429266 1_3:+60169390 Msa0130120:CDS
ATCCTTGATCACTTCTTTGA+CGG 0.429838 1_3:-60169418 None:intergenic
AATGAAATTACGTATTTGTT+GGG 0.433276 1_3:-60166170 Msa0130110:intron
ACTTGAAACTTTCTAAATGT+AGG 0.440684 1_3:+60170934 Msa0130120:three_prime_UTR
AGTGTCAAATATGACAATAT+GGG 0.441799 1_3:+60169338 Msa0130120:CDS
TTCAAGAAACACTAAGTTTG+TGG 0.443011 1_3:-60166492 None:intergenic
CAAGGATCATAAATGGTTAG+AGG 0.443116 1_3:+60169434 Msa0130120:CDS
TGAGAACAGGGCAAAATGTC+AGG 0.444147 1_3:+60169189 Msa0130120:CDS
TATTAGCATTGATCCTTATG+AGG 0.445684 1_3:+60168746 Msa0130120:CDS
GCATCTTGGAACACCTCATA+AGG 0.449712 1_3:-60168759 None:intergenic
GGTTAATTGTGTTTGAGATA+AGG 0.450252 1_3:-60166104 Msa0130110:intron
AAGAAAATGAGAAAAGATAT+AGG 0.450388 1_3:-60166407 None:intergenic
ACTCACAGCCTTCAAATCAT+AGG 0.450924 1_3:-60166853 None:intergenic
GGATCCTGTGTCTGTACTGC+TGG 0.455969 1_3:-60166792 None:intergenic
GAAATACAAGTATAAGGCTA+TGG 0.457061 1_3:-60166296 Msa0130110:intron
TCCTTGATCACTTCTTTGAC+GGG 0.461687 1_3:-60169417 None:intergenic
GACCAAATATGCAATTTAGC+TGG 0.466368 1_3:+60170988 Msa0130120:three_prime_UTR
ATATCTTCAGCTATTCCATA+AGG 0.466564 1_3:-60170009 None:intergenic
TTAGCTAGTTACATTTCTCC+TGG 0.468553 1_3:-60170572 None:intergenic
TTAATTACCATTGCAGTCTC+GGG 0.472464 1_3:+60168330 Msa0130120:CDS
TTATGAAGAAGTTTCTAAAA+GGG 0.474780 1_3:-60166433 None:intergenic
TGCTCTGAAATTATTAGGAT+CGG 0.475625 1_3:+60168530 Msa0130120:CDS
CAGAAGACACCATAGCAATC+AGG 0.479428 1_3:-60166825 None:intergenic
ATAGCAATCAGGCTTACTCT+TGG 0.486336 1_3:-60166814 None:intergenic
GGTGCAAAGCCTCGAGGACC+TGG 0.489357 1_3:+60168801 Msa0130120:CDS
CAAGCTGACTTTGTATTGCA+AGG 0.493060 1_3:-60169022 None:intergenic
TAGCAATCAGGCTTACTCTT+GGG 0.494853 1_3:-60166813 None:intergenic
CACAACTCTCATTTCTCTCT+AGG 0.499049 1_3:+60166587 Msa0130120:CDS
ATTGTAATCTTAACAACGTA+AGG 0.500539 1_3:+60170906 Msa0130120:three_prime_UTR
GGTGTTCCAAGATGCAGAAT+GGG 0.508422 1_3:+60168767 Msa0130120:CDS
CTCTTTATTTCCTTTGCTGA+GGG 0.509334 1_3:+60168716 Msa0130120:CDS
GCTCGTCAGCATGTAATAAG+TGG 0.510640 1_3:+60171076 Msa0130120:three_prime_UTR
AGGTGTTCCAAGATGCAGAA+TGG 0.523630 1_3:+60168766 Msa0130120:CDS
CAGTATGCCGTGTCGATCAA+AGG 0.525529 1_3:+60170038 Msa0130120:CDS
CAATGCCAGGTGTATACCAC+TGG 0.532941 1_3:+60169982 Msa0130120:intron
GCCCTTTCCGTCATATTCTG+AGG 0.533600 1_3:+60170790 Msa0130120:three_prime_UTR
AGTAAACATCATCCACAACT+TGG 0.534566 1_3:-60166244 Msa0130110:intron
CCTTGGCTAATTTCTGTCGT+AGG 0.542771 1_3:-60170187 None:intergenic
ACTCTTTATTTCCTTTGCTG+AGG 0.543885 1_3:+60168715 Msa0130120:CDS
AGGTCATTGCAAGCTCTTGA+AGG 0.545237 1_3:+60168555 Msa0130120:CDS
ACATTTAGAAAGTTTCAAGT+TGG 0.545610 1_3:-60170931 None:intergenic
AGGAAGAGGAGACAAAATCC+TGG 0.546374 1_3:+60168301 Msa0130120:intron
AAAGTACAGTGATGGTGCCT+AGG 0.547922 1_3:-60166616 None:intergenic
AAATACAAGTATAAGGCTAT+GGG 0.548052 1_3:-60166295 Msa0130110:intron
AAGCTGACTTTGTATTGCAA+GGG 0.548231 1_3:-60169021 None:intergenic
ACCTCAGAATATGACGGAAA+GGG 0.548502 1_3:-60170791 None:intergenic
TTGTTTGATTGTTAGAGAGG+TGG 0.548629 1_3:+60169569 Msa0130120:intron
GGCCGCAATATTTACCTCGC+CGG 0.551341 1_3:-60170420 None:intergenic
TTACATTTCTCCTGGGAGCA+TGG 0.551522 1_3:-60170564 None:intergenic
GCCCGTCAAAGAAGTGATCA+AGG 0.552804 1_3:+60169416 Msa0130120:CDS
TAAAACCTATATTAAACGTA+AGG 0.553419 1_3:+60170966 Msa0130120:three_prime_UTR
CCTGGGAGCATGGTATCACC+AGG 0.553980 1_3:-60170554 None:intergenic
GAAACCTAAAATAAACGTAA+AGG 0.554388 1_3:-60170701 None:intergenic
TTCTCTCTAGGACTCTTCCT+AGG 0.556403 1_3:+60166599 Msa0130120:CDS
CAGCCTTCAAATCATAGGTA+AGG 0.557569 1_3:-60166848 None:intergenic
CATCTAAACGAGTTAAAGCA+TGG 0.559378 1_3:-60169168 None:intergenic
AGGAATGATCAAAGATCGTA+TGG 0.561984 1_3:-60169654 None:intergenic
CAATGTGTAGCTAGCCCTGA+AGG 0.566385 1_3:+60169296 Msa0130120:intron
AAGAGTAAGCCTGATTGCTA+TGG 0.566462 1_3:+60166816 Msa0130120:CDS
CGCTCCATTCCAGGTCCTCG+AGG 0.567002 1_3:-60168810 None:intergenic
TAGCTAGTTACATTTCTCCT+GGG 0.567890 1_3:-60170571 None:intergenic
ATTGCTGTTTGTGATCTACC+TGG 0.568507 1_3:+60170536 Msa0130120:CDS
TGTAATAAAAGGGGAAAACA+TGG 0.575545 1_3:+60170660 Msa0130120:three_prime_UTR
GTGTAGCTAGCCCTGAAGGC+AGG 0.575889 1_3:+60169300 Msa0130120:intron
CCTGGTGATACCATGCTCCC+AGG 0.576358 1_3:+60170554 Msa0130120:CDS
GCATGTTGAGTTCTGTGAAG+TGG 0.576492 1_3:-60166643 None:intergenic
TCTTAAATGCCAGAATCGAT+GGG 0.577340 1_3:+60169391 Msa0130120:CDS
TTTGATCATTCCTACTCCCG+AGG 0.577680 1_3:+60169664 Msa0130120:CDS
GTATGTGGGAACAAAGAGGA+TGG 0.578347 1_3:-60166323 Msa0130110:intron
TACCTCAGAATATGACGGAA+AGG 0.580063 1_3:-60170792 None:intergenic
CAACAATGCAGGTGTTGCGA+TGG 0.584262 1_3:+60168683 Msa0130120:intron
CTCGTCAGCATGTAATAAGT+GGG 0.587173 1_3:+60171077 Msa0130120:three_prime_UTR
GACAGAAGCTGAGTTATTGG+CGG 0.587741 1_3:+60170373 Msa0130120:intron
CACACACATGGATAACTTTG+GGG 0.588099 1_3:-60170842 None:intergenic
AACCAATCACCCTCGGGAGT+AGG 0.588155 1_3:-60169674 None:intergenic
AAAGCCTCGAGGACCTGGAA+TGG 0.591306 1_3:+60168806 Msa0130120:CDS
TGCAGGTGTTGCGATGGAGT+TGG 0.591881 1_3:+60168689 Msa0130120:intron
TGAAATTATTAGGATCGGAA+AGG 0.596316 1_3:+60168535 Msa0130120:CDS
TTCTGGCATTTAAGAAGTCA+GGG 0.596329 1_3:-60169383 None:intergenic
AATGTCAAAGTTATAGTCGT+GGG 0.603734 1_3:+60168995 Msa0130120:CDS
ATAACAACTTCCCTCAGCAA+AGG 0.605246 1_3:-60168726 None:intergenic
AGTAGAAAACCAATCACCCT+CGG 0.605810 1_3:-60169681 None:intergenic
TTGAAACTTTCTAAATGTAG+GGG 0.608954 1_3:+60170936 Msa0130120:three_prime_UTR
AGGTGTTGCGATGGAGTTGG+AGG 0.609283 1_3:+60168692 Msa0130120:intron
GTGTCAAATATGACAATATG+GGG 0.610500 1_3:+60169339 Msa0130120:CDS
TAATGGTTATGTAATAAAAG+GGG 0.611749 1_3:+60170651 Msa0130120:three_prime_UTR
GGGAAACCACTCAACTACTC+AGG 0.614384 1_3:+60169359 Msa0130120:CDS
GAGGGTATGTGGGAACAAAG+AGG 0.614635 1_3:-60166327 Msa0130110:intron
GTAGAAAACCAATCACCCTC+GGG 0.619646 1_3:-60169680 None:intergenic
AACCCCTAAAAGAAAACATG+TGG 0.620050 1_3:+60166123 Msa0130120:five_prime_UTR
AACTCGTTTAGATGAGAACA+GGG 0.621950 1_3:+60169177 Msa0130120:CDS
TTGTAATCTTAACAACGTAA+GGG 0.625187 1_3:+60170907 Msa0130120:three_prime_UTR
ATGAAATTACGTATTTGTTG+GGG 0.626394 1_3:-60166169 Msa0130110:intron
TTGATCATTCCTACTCCCGA+GGG 0.629643 1_3:+60169665 Msa0130120:CDS
CAGGGACCTGAGTAGTTGAG+TGG 0.629977 1_3:-60169365 None:intergenic
CAATGTCAAAGTTATAGTCG+TGG 0.630469 1_3:+60168994 Msa0130120:CDS
TTCCGTTTAAAACGTCCATG+TGG 0.637434 1_3:-60170875 None:intergenic
AGCAGCACCCGAGACTGCAA+TGG 0.640432 1_3:-60168337 None:intergenic
CTATATCAAGTAAATACACA+AGG 0.642591 1_3:-60169730 None:intergenic
GGCGCCAGCAGTACAGACAC+AGG 0.643318 1_3:+60166788 Msa0130120:CDS
TGGTGATTATGAACTTGTCA+AGG 0.654428 1_3:+60170145 Msa0130120:CDS
ACACTTGCCTTTGATCGACA+CGG 0.659090 1_3:-60170045 None:intergenic
AGAGTTACCTCAGAATATGA+CGG 0.661366 1_3:-60170797 None:intergenic
ACACACATGGATAACTTTGG+GGG 0.678822 1_3:-60170841 None:intergenic
CTAATAGGTGCAAAGCCTCG+AGG 0.681429 1_3:+60168795 Msa0130120:CDS
AGGACCTGGAATGGAGCGTG+CGG 0.691301 1_3:+60168815 Msa0130120:CDS
TATTCCATAAGGATTTCCAG+TGG 0.701953 1_3:-60169998 None:intergenic
GTGGTGCTAAAGTACAGTGA+TGG 0.702787 1_3:-60166624 None:intergenic
CCTACGACAGAAATTAGCCA+AGG 0.707374 1_3:+60170187 Msa0130120:CDS
TGTGGCTCACCTAACCGGCG+AGG 0.716043 1_3:+60170406 Msa0130120:CDS
ACAGGGAAAAGCACTCAATG+CGG 0.748480 1_3:+60168961 Msa0130120:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAAAAGTTTTATTCATTA+GGG + chr1_3:60170119-60170138 Msa0130120:intron 15.0%
!! AATAATGGTTATGTAATAAA+AGG + chr1_3:60170649-60170668 Msa0130120:three_prime_UTR 15.0%
!! ATAATGGTTATGTAATAAAA+GGG + chr1_3:60170650-60170669 Msa0130120:three_prime_UTR 15.0%
!! AATGAAATTACGTATTTGTT+GGG - chr1_3:60166173-60166192 Msa0130110:intron 20.0%
!! AAGAAAATGAGAAAAGATAT+AGG - chr1_3:60166410-60166429 None:intergenic 20.0%
!!! TTATGAAGAAGTTTCTAAAA+GGG - chr1_3:60166436-60166455 None:intergenic 20.0%
!! TTTATGAAGAAGTTTCTAAA+AGG - chr1_3:60166437-60166456 None:intergenic 20.0%
!! TGGTTAATATGTTCTTTAAT+TGG + chr1_3:60166970-60166989 Msa0130120:intron 20.0%
!! ATGTTCTTTAATTGGATATT+TGG + chr1_3:60166978-60166997 Msa0130120:intron 20.0%
!! TGTTCTTTAATTGGATATTT+GGG + chr1_3:60166979-60166998 Msa0130120:intron 20.0%
!! CATCTATATATACAATGATT+AGG - chr1_3:60167050-60167069 None:intergenic 20.0%
!! ACATTATTCAGTGTAATTAT+AGG + chr1_3:60167144-60167163 Msa0130120:intron 20.0%
!! TCATTAATTCTTATTCTTAC+TGG + chr1_3:60167226-60167245 Msa0130120:intron 20.0%
!!! AACTGCAATTTTAAATTAAC+AGG - chr1_3:60167316-60167335 None:intergenic 20.0%
!!! TGTTAATTTAAAATTGCAGT+TGG + chr1_3:60167315-60167334 Msa0130120:intron 20.0%
!!! GGTTCCAAAATTTAAATTTT+TGG + chr1_3:60167611-60167630 Msa0130120:intron 20.0%
!!! CTCACCAAAAATTTAAATTT+TGG - chr1_3:60167618-60167637 None:intergenic 20.0%
!! ATATACTATATAGATAGAAG+TGG + chr1_3:60167809-60167828 Msa0130120:intron 20.0%
!! ACTAAATCATTTGTTTCATT+TGG + chr1_3:60168196-60168215 Msa0130120:intron 20.0%
!! AACATAAAAAATTAACTCAG+TGG - chr1_3:60168470-60168489 None:intergenic 20.0%
!!! TATAGTTAACTGTCTTTTAT+AGG - chr1_3:60168911-60168930 None:intergenic 20.0%
!!! AAATTTTTTGCAGGAATATT+TGG - chr1_3:60169148-60169167 None:intergenic 20.0%
!!! TTCTGTTATTTCTTCTTTTT+TGG - chr1_3:60169253-60169272 None:intergenic 20.0%
!! CAAAAGGTAAAATTTGTAAT+TGG + chr1_3:60169477-60169496 Msa0130120:intron 20.0%
!! AATCCATGTAATTAAATATG+TGG + chr1_3:60169500-60169519 Msa0130120:intron 20.0%
!! ATTCCACATATTTAATTACA+TGG - chr1_3:60169506-60169525 None:intergenic 20.0%
!! TATTGTTAACTTATTACACA+AGG - chr1_3:60169544-60169563 None:intergenic 20.0%
!! GTATTTACTTGATATAGAAT+TGG + chr1_3:60169736-60169755 Msa0130120:CDS 20.0%
!! ATTAATATATTCACCAATGT+CGG + chr1_3:60169805-60169824 Msa0130120:intron 20.0%
!!! AACTTTAAAGCTCAATTAAA+AGG + chr1_3:60169884-60169903 Msa0130120:intron 20.0%
!!! AATAAAACTTTTTGTCATAG+AGG - chr1_3:60170114-60170133 None:intergenic 20.0%
!!! GACAAAAAGTTTTATTCATT+AGG + chr1_3:60170118-60170137 Msa0130120:intron 20.0%
!! CGATAACAATTTCATATATT+TGG + chr1_3:60170240-60170259 Msa0130120:intron 20.0%
!! TAATGGTTATGTAATAAAAG+GGG + chr1_3:60170651-60170670 Msa0130120:three_prime_UTR 20.0%
!!! GTTTAATATAGGTTTTAAGT+TGG - chr1_3:60170963-60170982 None:intergenic 20.0%
!! TAAAACCTATATTAAACGTA+AGG + chr1_3:60170966-60170985 Msa0130120:three_prime_UTR 20.0%
!! TTTCCACATGTTTTCTTTTA+GGG - chr1_3:60166129-60166148 Msa0130110:intron 25.0%
!! TTTTCCACATGTTTTCTTTT+AGG - chr1_3:60166130-60166149 Msa0130110:intron 25.0%
!! ATGAAATTACGTATTTGTTG+GGG - chr1_3:60166172-60166191 Msa0130110:intron 25.0%
! GAATGAAATTACGTATTTGT+TGG - chr1_3:60166174-60166193 Msa0130110:intron 25.0%
! AAATACAAGTATAAGGCTAT+GGG - chr1_3:60166298-60166317 Msa0130110:intron 25.0%
!! GGATTTGAAATACAAGTATA+AGG - chr1_3:60166305-60166324 Msa0130110:intron 25.0%
!!! TTCTTGAATTCTAAGATTCT+TGG + chr1_3:60166507-60166526 Msa0130120:five_prime_UTR 25.0%
!!! AATTCTAAGATTCTTGGATA+TGG + chr1_3:60166513-60166532 Msa0130120:exon 25.0%
! ATAAATACAGTAGAGTAACA+AGG - chr1_3:60166882-60166901 None:intergenic 25.0%
!! ATAATGTTCTTGAAGCTTTT+TGG - chr1_3:60167952-60167971 None:intergenic 25.0%
! AAAAGCTTCAAGAACATTAT+TGG + chr1_3:60167952-60167971 Msa0130120:intron 25.0%
!!! AAATATTTGTTGGAAGCATT+AGG - chr1_3:60168035-60168054 None:intergenic 25.0%
!! GATTTTCCTCAAATATTTGT+TGG - chr1_3:60168045-60168064 None:intergenic 25.0%
! ATTGTAACAAGTATCCTTTA+TGG + chr1_3:60168074-60168093 Msa0130120:intron 25.0%
! TTGTAACAAGTATCCTTTAT+GGG + chr1_3:60168075-60168094 Msa0130120:intron 25.0%
! AATACCATGGAAAATTTGAA+AGG - chr1_3:60168225-60168244 None:intergenic 25.0%
! CTTAACATTAAGTAATACCA+TGG - chr1_3:60168238-60168257 None:intergenic 25.0%
!! ATATACCAATTTGTTTCGTT+TGG + chr1_3:60168265-60168284 Msa0130120:intron 25.0%
! AATGGTAATTAATTTCTTCC+AGG - chr1_3:60168322-60168341 None:intergenic 25.0%
!!! TTTGAAAAGCATCAGTAATA+TGG - chr1_3:60168648-60168667 None:intergenic 25.0%
! AAGTGTCAAATATGACAATA+TGG + chr1_3:60169337-60169356 Msa0130120:CDS 25.0%
! AGTGTCAAATATGACAATAT+GGG + chr1_3:60169338-60169357 Msa0130120:CDS 25.0%
! TTATTGTTTGATTGTTAGAG+AGG + chr1_3:60169566-60169585 Msa0130120:intron 25.0%
! CTATATCAAGTAAATACACA+AGG - chr1_3:60169733-60169752 None:intergenic 25.0%
! TTAATATATTCACCAATGTC+GGG + chr1_3:60169806-60169825 Msa0130120:intron 25.0%
! CAAAGACAAAAACAGTTTAT+AGG - chr1_3:60169910-60169929 None:intergenic 25.0%
! AAGCAATTCAGAAATCATAA+AGG - chr1_3:60170086-60170105 None:intergenic 25.0%
! ATTTGTATTCTCTCTTATCA+GGG + chr1_3:60170512-60170531 Msa0130120:intron 25.0%
! TACCAATTGATGTAGAATAA+TGG + chr1_3:60170634-60170653 Msa0130120:three_prime_UTR 25.0%
! AACCATTATTCTACATCAAT+TGG - chr1_3:60170639-60170658 None:intergenic 25.0%
! GAAACCTAAAATAAACGTAA+AGG - chr1_3:60170704-60170723 None:intergenic 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG + chr1_3:60170708-60170727 Msa0130120:three_prime_UTR 25.0%
! ATTGTAATCTTAACAACGTA+AGG + chr1_3:60170906-60170925 Msa0130120:three_prime_UTR 25.0%
! TTGTAATCTTAACAACGTAA+GGG + chr1_3:60170907-60170926 Msa0130120:three_prime_UTR 25.0%
!! ACATTTAGAAAGTTTCAAGT+TGG - chr1_3:60170934-60170953 None:intergenic 25.0%
! ACTTGAAACTTTCTAAATGT+AGG + chr1_3:60170934-60170953 Msa0130120:three_prime_UTR 25.0%
! CTTGAAACTTTCTAAATGTA+GGG + chr1_3:60170935-60170954 Msa0130120:three_prime_UTR 25.0%
! TTGAAACTTTCTAAATGTAG+GGG + chr1_3:60170936-60170955 Msa0130120:three_prime_UTR 25.0%
! AATTATTGTGTTCTACAAGA+TGG + chr1_3:60171149-60171168 Msa0130120:three_prime_UTR 25.0%
! GGTTAATTGTGTTTGAGATA+AGG - chr1_3:60166107-60166126 Msa0130110:intron 30.0%
! TTCCACATGTTTTCTTTTAG+GGG - chr1_3:60166128-60166147 Msa0130110:intron 30.0%
! TTGGATTTTGGATGAATGAA+TGG - chr1_3:60166196-60166215 Msa0130110:intron 30.0%
! TACGAGACATTATTGGATTT+TGG - chr1_3:60166208-60166227 Msa0130110:intron 30.0%
TTCTTCTTACGAGACATTAT+TGG - chr1_3:60166215-60166234 Msa0130110:intron 30.0%
GAAGATAAAAAACCAAGTTG+TGG + chr1_3:60166232-60166251 Msa0130120:five_prime_UTR 30.0%
GAAATACAAGTATAAGGCTA+TGG - chr1_3:60166299-60166318 Msa0130110:intron 30.0%
AGTGTAGAAGGAAGAAAAAA+GGG - chr1_3:60166352-60166371 Msa0130110:CDS 30.0%
AAGTGTAGAAGGAAGAAAAA+AGG - chr1_3:60166353-60166372 Msa0130110:CDS 30.0%
TTCAAGAAACACTAAGTTTG+TGG - chr1_3:60166495-60166514 None:intergenic 30.0%
!! AAGAGTAAAGTTACTGACTT+TGG - chr1_3:60166691-60166710 None:intergenic 30.0%
TTTGTATCAATTCAGCTTCT+TGG + chr1_3:60166723-60166742 Msa0130120:intron 30.0%
TTGTATCAATTCAGCTTCTT+GGG + chr1_3:60166724-60166743 Msa0130120:intron 30.0%
CTTGCTTTGTATTCAACTTA+TGG + chr1_3:60166929-60166948 Msa0130120:intron 30.0%
! AGAATTTTGTTAAGGAGGAT+TGG + chr1_3:60167005-60167024 Msa0130120:intron 30.0%
TCTCAAATTATTATCCGTGT+CGG - chr1_3:60167119-60167138 None:intergenic 30.0%
ATTGCAGTTGGTTAATATAC+AGG + chr1_3:60167327-60167346 Msa0130120:intron 30.0%
TTGCAGTTGGTTAATATACA+GGG + chr1_3:60167328-60167347 Msa0130120:intron 30.0%
! ATCTGAAGCATATTGTGATT+TGG + chr1_3:60167588-60167607 Msa0130120:intron 30.0%
! TCTGAAGCATATTGTGATTT+GGG + chr1_3:60167589-60167608 Msa0130120:intron 30.0%
GTGATCTTCAATTACATGTA+CGG - chr1_3:60167685-60167704 None:intergenic 30.0%
TGAAGATCACACTACAATTA+AGG + chr1_3:60167695-60167714 Msa0130120:intron 30.0%
AGATAGAAGTGGAACTAAAT+TGG + chr1_3:60167820-60167839 Msa0130120:intron 30.0%
ATGCTTCCAACAAATATTTG+AGG + chr1_3:60168036-60168055 Msa0130120:intron 30.0%
! TAGCAGTTTAGGATCAAATA+TGG + chr1_3:60168107-60168126 Msa0130120:intron 30.0%
TGTATCTAGAGGAGTTAATA+TGG - chr1_3:60168158-60168177 None:intergenic 30.0%
!! CAAATGATTTAGTTCTGAGA+CGG - chr1_3:60168189-60168208 None:intergenic 30.0%
ATTAATTACCATTGCAGTCT+CGG + chr1_3:60168329-60168348 Msa0130120:CDS 30.0%
!! TTCCAATCATCTACTTTTCA+AGG + chr1_3:60168368-60168387 Msa0130120:CDS 30.0%
!!! TTTTTATGTTAGCTTGCATC+TGG + chr1_3:60168480-60168499 Msa0130120:intron 30.0%
CCTAATAATTTCAGAGCAAT+AGG - chr1_3:60168528-60168547 None:intergenic 30.0%
!! CCTATTGCTCTGAAATTATT+AGG + chr1_3:60168525-60168544 Msa0130120:CDS 30.0%
!! TGCTCTGAAATTATTAGGAT+CGG + chr1_3:60168530-60168549 Msa0130120:CDS 30.0%
TGAAATTATTAGGATCGGAA+AGG + chr1_3:60168535-60168554 Msa0130120:CDS 30.0%
! TATATGAAAATGCCCGTTTT+TGG + chr1_3:60168598-60168617 Msa0130120:intron 30.0%
ATGTTCTAATTCAACAATGC+AGG + chr1_3:60168672-60168691 Msa0130120:intron 30.0%
!! TATTAGCATTGATCCTTATG+AGG + chr1_3:60168746-60168765 Msa0130120:CDS 30.0%
AATGTCAAAGTTATAGTCGT+GGG + chr1_3:60168995-60169014 Msa0130120:CDS 30.0%
TAGCAACATTAGGAACAATA+AGG - chr1_3:60169076-60169095 None:intergenic 30.0%
CTGCATTAAAATACACATGA+AGG - chr1_3:60169100-60169119 None:intergenic 30.0%
!!! AAAGCATGGAAATTTTTTGC+AGG - chr1_3:60169157-60169176 None:intergenic 30.0%
GTGTCAAATATGACAATATG+GGG + chr1_3:60169339-60169358 Msa0130120:CDS 30.0%
AAGTGATCAAGGATCATAAA+TGG + chr1_3:60169427-60169446 Msa0130120:CDS 30.0%
GTTCACTGAAAAAGTTCAAA+AGG + chr1_3:60169461-60169480 Msa0130120:CDS 30.0%
TGGTGCACTTATTCAAAAAT+GGG + chr1_3:60169589-60169608 Msa0130120:CDS 30.0%
ATATCTTCAGCTATTCCATA+AGG - chr1_3:60170012-60170031 None:intergenic 30.0%
!!! AGTTTTATTCATTAGGGAGA+TGG + chr1_3:60170125-60170144 Msa0130120:intron 30.0%
TAATGCATTTACCAATGTTC+AGG - chr1_3:60170318-60170337 None:intergenic 30.0%
CATTTGTATTCTCTCTTATC+AGG + chr1_3:60170511-60170530 Msa0130120:intron 30.0%
TTTGTATTCTCTCTTATCAG+GGG + chr1_3:60170513-60170532 Msa0130120:intron 30.0%
TGAATGTCAAAGCAGATATA+TGG + chr1_3:60170600-60170619 Msa0130120:three_prime_UTR 30.0%
TGTAATAAAAGGGGAAAACA+TGG + chr1_3:60170660-60170679 Msa0130120:three_prime_UTR 30.0%
! ACATGGCTAAATTGCATTTT+TGG + chr1_3:60170677-60170696 Msa0130120:three_prime_UTR 30.0%
!! TGGACCTTTACGTTTATTTT+AGG + chr1_3:60170697-60170716 Msa0130120:three_prime_UTR 30.0%
TTGGTCCTTACGTTTAATAT+AGG - chr1_3:60170974-60170993 None:intergenic 30.0%
TTCCAGCTAAATTGCATATT+TGG - chr1_3:60170993-60171012 None:intergenic 30.0%
AACCCCTAAAAGAAAACATG+TGG + chr1_3:60166123-60166142 Msa0130120:five_prime_UTR 35.0%
AGTAAACATCATCCACAACT+TGG - chr1_3:60166247-60166266 Msa0130110:intron 35.0%
TAGAAGGAAGAAAAAAGGGA+GGG - chr1_3:60166348-60166367 Msa0130110:CDS 35.0%
! TTGATGAAGAGAAGTGTAGA+AGG - chr1_3:60166364-60166383 Msa0130110:CDS 35.0%
CTTGACTGAAAAGTAAAAGC+AGG - chr1_3:60166764-60166783 None:intergenic 35.0%
!! TTTACTTTTCAGTCAAGTGC+AGG + chr1_3:60166767-60166786 Msa0130120:intron 35.0%
! TTGGGAGCAGAATTTTGTTA+AGG + chr1_3:60166997-60167016 Msa0130120:intron 35.0%
! ATTTTGTTAAGGAGGATTGG+TGG + chr1_3:60167008-60167027 Msa0130120:intron 35.0%
! TGTAATTATAGGTGTCGTGT+CGG + chr1_3:60167155-60167174 Msa0130120:intron 35.0%
TAATGACATCCTATGAAGCA+CGG - chr1_3:60167212-60167231 None:intergenic 35.0%
TGGTTAATATACAGGGATAG+AGG + chr1_3:60167335-60167354 Msa0130120:intron 35.0%
TAATATACAGGGATAGAGGT+CGG + chr1_3:60167339-60167358 Msa0130120:intron 35.0%
AAACTAAAACTCTGGTATGG+GGG - chr1_3:60167494-60167513 None:intergenic 35.0%
CAAACTAAAACTCTGGTATG+GGG - chr1_3:60167495-60167514 None:intergenic 35.0%
GCAAACTAAAACTCTGGTAT+GGG - chr1_3:60167496-60167515 None:intergenic 35.0%
AGCAAACTAAAACTCTGGTA+TGG - chr1_3:60167497-60167516 None:intergenic 35.0%
CACCTCTCAATCATCATTTA+CGG - chr1_3:60167520-60167539 None:intergenic 35.0%
CACAATTGAGAGACTGTTAA+AGG + chr1_3:60167549-60167568 Msa0130120:intron 35.0%
CTGAAGCATATTGTGATTTG+GGG + chr1_3:60167590-60167609 Msa0130120:intron 35.0%
!! ATTCGAAGCATCGTGTATAT+AGG + chr1_3:60167784-60167803 Msa0130120:intron 35.0%
CACAAACTGAACAAAAGAGT+AGG - chr1_3:60167880-60167899 None:intergenic 35.0%
!!! GAAGCTTTTTGGCTATCAAT+TGG - chr1_3:60167941-60167960 None:intergenic 35.0%
ATCTAGAGGAGTTAATATGG+AGG - chr1_3:60168155-60168174 None:intergenic 35.0%
! GCATCCTTTCAAATTTTCCA+TGG + chr1_3:60168218-60168237 Msa0130120:intron 35.0%
ATTGGCCAAACGAAACAAAT+TGG - chr1_3:60168273-60168292 None:intergenic 35.0%
TTAATTACCATTGCAGTCTC+GGG + chr1_3:60168330-60168349 Msa0130120:CDS 35.0%
CACCTTGAAAAGTAGATGAT+TGG - chr1_3:60168373-60168392 None:intergenic 35.0%
!! TTTTCAAGGTGAGTGTATCT+TGG + chr1_3:60168382-60168401 Msa0130120:intron 35.0%
CTAAATTGCATGGCCATTAA+AGG - chr1_3:60168445-60168464 None:intergenic 35.0%
!! TTCAGAGCAATAGGTTGATT+TGG - chr1_3:60168519-60168538 None:intergenic 35.0%
ATACACGCATACTCCAAAAA+CGG - chr1_3:60168614-60168633 None:intergenic 35.0%
! ACTCTTTATTTCCTTTGCTG+AGG + chr1_3:60168715-60168734 Msa0130120:CDS 35.0%
! CTCTTTATTTCCTTTGCTGA+GGG + chr1_3:60168716-60168735 Msa0130120:CDS 35.0%
! CATAAATGGGCAGATTTTTG+CGG + chr1_3:60168848-60168867 Msa0130120:CDS 35.0%
TATCTTACCATGTGTACAAC+AGG + chr1_3:60168943-60168962 Msa0130120:intron 35.0%
ATCTTACCATGTGTACAACA+GGG + chr1_3:60168944-60168963 Msa0130120:intron 35.0%
CAATGTCAAAGTTATAGTCG+TGG + chr1_3:60168994-60169013 Msa0130120:CDS 35.0%
! AAGCTGACTTTGTATTGCAA+GGG - chr1_3:60169024-60169043 None:intergenic 35.0%
ACATGAAGGTTAGCAACATT+AGG - chr1_3:60169086-60169105 None:intergenic 35.0%
CATCTAAACGAGTTAAAGCA+TGG - chr1_3:60169171-60169190 None:intergenic 35.0%
TAACTCGTTTAGATGAGAAC+AGG + chr1_3:60169176-60169195 Msa0130120:CDS 35.0%
AACTCGTTTAGATGAGAACA+GGG + chr1_3:60169177-60169196 Msa0130120:CDS 35.0%
TTCTGGCATTTAAGAAGTCA+GGG - chr1_3:60169386-60169405 None:intergenic 35.0%
ATTCTGGCATTTAAGAAGTC+AGG - chr1_3:60169387-60169406 None:intergenic 35.0%
TTCTTAAATGCCAGAATCGA+TGG + chr1_3:60169390-60169409 Msa0130120:CDS 35.0%
TCTTAAATGCCAGAATCGAT+GGG + chr1_3:60169391-60169410 Msa0130120:CDS 35.0%
ATCCTTGATCACTTCTTTGA+CGG - chr1_3:60169421-60169440 None:intergenic 35.0%
CAAGGATCATAAATGGTTAG+AGG + chr1_3:60169434-60169453 Msa0130120:CDS 35.0%
TTGTTTGATTGTTAGAGAGG+TGG + chr1_3:60169569-60169588 Msa0130120:intron 35.0%
GTGGTGCACTTATTCAAAAA+TGG + chr1_3:60169588-60169607 Msa0130120:CDS 35.0%
GGTGCACTTATTCAAAAATG+GGG + chr1_3:60169590-60169609 Msa0130120:CDS 35.0%
AGGAATGATCAAAGATCGTA+TGG - chr1_3:60169657-60169676 None:intergenic 35.0%
TTGCAATTACATACAATGCC+AGG + chr1_3:60169969-60169988 Msa0130120:intron 35.0%
TATACCACTGGAAATCCTTA+TGG + chr1_3:60169994-60170013 Msa0130120:CDS 35.0%
TATTCCATAAGGATTTCCAG+TGG - chr1_3:60170001-60170020 None:intergenic 35.0%
TGGTGATTATGAACTTGTCA+AGG + chr1_3:60170145-60170164 Msa0130120:CDS 35.0%
TAGCTAGTTACATTTCTCCT+GGG - chr1_3:60170574-60170593 None:intergenic 35.0%
TTAGCTAGTTACATTTCTCC+TGG - chr1_3:60170575-60170594 None:intergenic 35.0%
AGAGTTACCTCAGAATATGA+CGG - chr1_3:60170800-60170819 None:intergenic 35.0%
ACACACACATGGATAACTTT+GGG - chr1_3:60170846-60170865 None:intergenic 35.0%
AACACACACATGGATAACTT+TGG - chr1_3:60170847-60170866 None:intergenic 35.0%
GACCAAATATGCAATTTAGC+TGG + chr1_3:60170988-60171007 Msa0130120:three_prime_UTR 35.0%
CAAGCTTCGTAACTAGAAAT+AGG - chr1_3:60171114-60171133 None:intergenic 35.0%
! AGAAAAAAGGGAGGGTATGT+GGG - chr1_3:60166340-60166359 Msa0130110:intron 40.0%
! AAGAAAAAAGGGAGGGTATG+TGG - chr1_3:60166341-60166360 Msa0130110:intron 40.0%
GTAGAAGGAAGAAAAAAGGG+AGG - chr1_3:60166349-60166368 Msa0130110:CDS 40.0%
CACAACTCTCATTTCTCTCT+AGG + chr1_3:60166587-60166606 Msa0130120:CDS 40.0%
TAGCAATCAGGCTTACTCTT+GGG - chr1_3:60166816-60166835 None:intergenic 40.0%
ATAGCAATCAGGCTTACTCT+TGG - chr1_3:60166817-60166836 None:intergenic 40.0%
AAGAGTAAGCCTGATTGCTA+TGG + chr1_3:60166816-60166835 Msa0130120:CDS 40.0%
CTGCCTTACCTATGATTTGA+AGG + chr1_3:60166845-60166864 Msa0130120:CDS 40.0%
CAGCCTTCAAATCATAGGTA+AGG - chr1_3:60166851-60166870 None:intergenic 40.0%
ACTCACAGCCTTCAAATCAT+AGG - chr1_3:60166856-60166875 None:intergenic 40.0%
!! GGCTTTAGTGCATGATTTTG+TGG + chr1_3:60166950-60166969 Msa0130120:intron 40.0%
! GGAGCAGAATTTTGTTAAGG+AGG + chr1_3:60167000-60167019 Msa0130120:intron 40.0%
GTGTTCATGTCGGTGTATTA+GGG - chr1_3:60167077-60167096 None:intergenic 40.0%
TAATACACCGACATGAACAC+CGG + chr1_3:60167077-60167096 Msa0130120:intron 40.0%
AACTAAAACTCTGGTATGGG+GGG - chr1_3:60167493-60167512 None:intergenic 40.0%
TACGGAGCAAACTAAAACTC+TGG - chr1_3:60167502-60167521 None:intergenic 40.0%
CTCCGTAAATGATGATTGAG+AGG + chr1_3:60167515-60167534 Msa0130120:intron 40.0%
ATGACTGAAATCGTCTGATG+CGG + chr1_3:60167653-60167672 Msa0130120:intron 40.0%
CGGTGAATCTTTGTATCTAG+AGG - chr1_3:60168169-60168188 None:intergenic 40.0%
TCCTCTTCCTGTAAACACAT+TGG - chr1_3:60168291-60168310 None:intergenic 40.0%
TCAGACTCAGTCACCTTTAA+TGG + chr1_3:60168429-60168448 Msa0130120:intron 40.0%
CTCAGTGGAACTAAATTGCA+TGG - chr1_3:60168455-60168474 None:intergenic 40.0%
! CTTGCATCTGGTGAAGTTTT+TGG + chr1_3:60168492-60168511 Msa0130120:CDS 40.0%
TACACGCATACTCCAAAAAC+GGG - chr1_3:60168613-60168632 None:intergenic 40.0%
TTGGAGTATGCGTGTATCAT+AGG + chr1_3:60168617-60168636 Msa0130120:intron 40.0%
ATAACAACTTCCCTCAGCAA+AGG - chr1_3:60168729-60168748 None:intergenic 40.0%
CGGCTTTGCTAGACATAAAT+GGG + chr1_3:60168835-60168854 Msa0130120:CDS 40.0%
! TTTTTGCGGAGCAGGTAAAT+TGG + chr1_3:60168862-60168881 Msa0130120:intron 40.0%
! CAAGCTGACTTTGTATTGCA+AGG - chr1_3:60169025-60169044 None:intergenic 40.0%
CTTGCAATACAAAGTCAGCT+TGG + chr1_3:60169023-60169042 Msa0130120:intron 40.0%
TCCTTGATCACTTCTTTGAC+GGG - chr1_3:60169420-60169439 None:intergenic 40.0%
AGTAGAAAACCAATCACCCT+CGG - chr1_3:60169684-60169703 None:intergenic 40.0%
AAATACACGTGAATGCGCAT+GGG - chr1_3:60169833-60169852 None:intergenic 40.0%
AAAATACACGTGAATGCGCA+TGG - chr1_3:60169834-60169853 None:intergenic 40.0%
TATTCAGTGTGCCTGAACAT+TGG + chr1_3:60170304-60170323 Msa0130120:intron 40.0%
ATTGGCGGAGAAAAAATGTG+TGG + chr1_3:60170388-60170407 Msa0130120:CDS 40.0%
!! ATTGCTGTTTGTGATCTACC+TGG + chr1_3:60170536-60170555 Msa0130120:CDS 40.0%
! ACCTCAGAATATGACGGAAA+GGG - chr1_3:60170794-60170813 None:intergenic 40.0%
! TACCTCAGAATATGACGGAA+AGG - chr1_3:60170795-60170814 None:intergenic 40.0%
ACACACATGGATAACTTTGG+GGG - chr1_3:60170844-60170863 None:intergenic 40.0%
CACACACATGGATAACTTTG+GGG - chr1_3:60170845-60170864 None:intergenic 40.0%
GGCTAACAAAAACACACACA+TGG - chr1_3:60170857-60170876 None:intergenic 40.0%
!! GTGTGTTTTTGTTAGCCACA+TGG + chr1_3:60170860-60170879 Msa0130120:three_prime_UTR 40.0%
!! AGCCACATGGACGTTTTAAA+CGG + chr1_3:60170873-60170892 Msa0130120:three_prime_UTR 40.0%
! TTCCGTTTAAAACGTCCATG+TGG - chr1_3:60170878-60170897 None:intergenic 40.0%
TTACATGCTGACGAGCTTTA+TGG - chr1_3:60171072-60171091 None:intergenic 40.0%
CTCGTCAGCATGTAATAAGT+GGG + chr1_3:60171077-60171096 Msa0130120:three_prime_UTR 40.0%
GTATGTGGGAACAAAGAGGA+TGG - chr1_3:60166326-60166345 Msa0130110:intron 45.0%
!! TTCTCTCTAGGACTCTTCCT+AGG + chr1_3:60166599-60166618 Msa0130120:CDS 45.0%
! AAAGTACAGTGATGGTGCCT+AGG - chr1_3:60166619-60166638 None:intergenic 45.0%
! GTGGTGCTAAAGTACAGTGA+TGG - chr1_3:60166627-60166646 None:intergenic 45.0%
GCATGTTGAGTTCTGTGAAG+TGG - chr1_3:60166646-60166665 None:intergenic 45.0%
CAGAAGACACCATAGCAATC+AGG - chr1_3:60166828-60166847 None:intergenic 45.0%
GGTGTTCATGTCGGTGTATT+AGG - chr1_3:60167078-60167097 None:intergenic 45.0%
AGGGATAGAGGTCGGTAATA+TGG + chr1_3:60167347-60167366 Msa0130120:intron 45.0%
AGTAGCAGTTGTCACGATTG+CGG + chr1_3:60167381-60167400 Msa0130120:intron 45.0%
ACTAAAACTCTGGTATGGGG+GGG - chr1_3:60167492-60167511 None:intergenic 45.0%
CAATATTGCAGCCGCAATTG+CGG + chr1_3:60167749-60167768 Msa0130120:intron 45.0%
AATATTGCAGCCGCAATTGC+GGG + chr1_3:60167750-60167769 Msa0130120:intron 45.0%
GCTAAGACAGCAACCCATAA+AGG - chr1_3:60168091-60168110 None:intergenic 45.0%
GGTTGCTGTCTTAGCAGTTT+AGG + chr1_3:60168096-60168115 Msa0130120:intron 45.0%
CGTTTGGCCAATGTGTTTAC+AGG + chr1_3:60168281-60168300 Msa0130120:intron 45.0%
GCCAATGTGTTTACAGGAAG+AGG + chr1_3:60168287-60168306 Msa0130120:intron 45.0%
AGGAAGAGGAGACAAAATCC+TGG + chr1_3:60168301-60168320 Msa0130120:intron 45.0%
AGGTCATTGCAAGCTCTTGA+AGG + chr1_3:60168555-60168574 Msa0130120:CDS 45.0%
GCATCTTGGAACACCTCATA+AGG - chr1_3:60168762-60168781 None:intergenic 45.0%
AGGTGTTCCAAGATGCAGAA+TGG + chr1_3:60168766-60168785 Msa0130120:CDS 45.0%
GGTGTTCCAAGATGCAGAAT+GGG + chr1_3:60168767-60168786 Msa0130120:CDS 45.0%
! GCAGAATGGGCTTTGCTAAT+AGG + chr1_3:60168780-60168799 Msa0130120:CDS 45.0%
GCGGCTTTGCTAGACATAAA+TGG + chr1_3:60168834-60168853 Msa0130120:CDS 45.0%
! GCTTTTCCCTGTTGTACACA+TGG - chr1_3:60168953-60168972 None:intergenic 45.0%
!! ACAGGGAAAAGCACTCAATG+CGG + chr1_3:60168961-60168980 Msa0130120:intron 45.0%
TGAGAACAGGGCAAAATGTC+AGG + chr1_3:60169189-60169208 Msa0130120:CDS 45.0%
TTTGATCATTCCTACTCCCG+AGG + chr1_3:60169664-60169683 Msa0130120:CDS 45.0%
TTGATCATTCCTACTCCCGA+GGG + chr1_3:60169665-60169684 Msa0130120:CDS 45.0%
GTAGAAAACCAATCACCCTC+GGG - chr1_3:60169683-60169702 None:intergenic 45.0%
!!! GAGGGTGATTGGTTTTCTAC+TGG + chr1_3:60169683-60169702 Msa0130120:CDS 45.0%
GATTTCCAGTGGTATACACC+TGG - chr1_3:60169990-60170009 None:intergenic 45.0%
ACACTTGCCTTTGATCGACA+CGG - chr1_3:60170048-60170067 None:intergenic 45.0%
CCTTGGCTAATTTCTGTCGT+AGG - chr1_3:60170190-60170209 None:intergenic 45.0%
CCTACGACAGAAATTAGCCA+AGG + chr1_3:60170187-60170206 Msa0130120:CDS 45.0%
CTCAAGTTTCAGACTCACCT+TGG - chr1_3:60170207-60170226 None:intergenic 45.0%
GCAGACAGAAGCTGAGTTAT+TGG + chr1_3:60170370-60170389 Msa0130120:intron 45.0%
GACAGAAGCTGAGTTATTGG+CGG + chr1_3:60170373-60170392 Msa0130120:intron 45.0%
AAATGTGTGGCTCACCTAAC+CGG + chr1_3:60170401-60170420 Msa0130120:CDS 45.0%
! CAATATTTACCTCGCCGGTT+AGG - chr1_3:60170418-60170437 None:intergenic 45.0%
AACCGGCGAGGTAAATATTG+CGG + chr1_3:60170418-60170437 Msa0130120:intron 45.0%
TTACATTTCTCCTGGGAGCA+TGG - chr1_3:60170567-60170586 None:intergenic 45.0%
CTCTGTCAAAAACGTCCATG+TGG + chr1_3:60170816-60170835 Msa0130120:three_prime_UTR 45.0%
GCTCGTCAGCATGTAATAAG+TGG + chr1_3:60171076-60171095 Msa0130120:three_prime_UTR 45.0%
! GAGGGTATGTGGGAACAAAG+AGG - chr1_3:60166330-60166349 Msa0130110:intron 50.0%
! TATTATCCGTGTCGGCGTGT+CGG - chr1_3:60167111-60167130 None:intergenic 50.0%
! TATAGGTGTCGTGTCGGTGT+CGG + chr1_3:60167161-60167180 Msa0130120:intron 50.0%
TGTCACGATTGCGGTCATTG+TGG + chr1_3:60167390-60167409 Msa0130120:intron 50.0%
ATTAAGGTGTGACGCCGTTG+AGG + chr1_3:60167711-60167730 Msa0130120:intron 50.0%
TGTTGTGGTAGCCTCCTCAA+CGG - chr1_3:60167728-60167747 None:intergenic 50.0%
! CGGCTGCAATATTGCTGTTG+TGG - chr1_3:60167743-60167762 None:intergenic 50.0%
! GACTGAGTCTGAGACTGCAA+TGG - chr1_3:60168421-60168440 None:intergenic 50.0%
! CAACAATGCAGGTGTTGCGA+TGG + chr1_3:60168683-60168702 Msa0130120:intron 50.0%
GCAAAGCCCATTCTGCATCT+TGG - chr1_3:60168776-60168795 None:intergenic 50.0%
CTAATAGGTGCAAAGCCTCG+AGG + chr1_3:60168795-60168814 Msa0130120:CDS 50.0%
!! CTTCAGGGCTAGCTACACAT+TGG - chr1_3:60169298-60169317 None:intergenic 50.0%
CAATGTGTAGCTAGCCCTGA+AGG + chr1_3:60169296-60169315 Msa0130120:intron 50.0%
GTAGAAGACACCTGCCTTCA+GGG - chr1_3:60169313-60169332 None:intergenic 50.0%
GGGAAACCACTCAACTACTC+AGG + chr1_3:60169359-60169378 Msa0130120:CDS 50.0%
GCCCGTCAAAGAAGTGATCA+AGG + chr1_3:60169416-60169435 Msa0130120:CDS 50.0%
CAATGCCAGGTGTATACCAC+TGG + chr1_3:60169982-60170001 Msa0130120:intron 50.0%
! CAGTATGCCGTGTCGATCAA+AGG + chr1_3:60170038-60170057 Msa0130120:CDS 50.0%
AAATATTGCGGCCCGAATCG+CGG + chr1_3:60170430-60170449 Msa0130120:intron 50.0%
TGTTTGCGTAGACCGCGATT+CGG - chr1_3:60170445-60170464 None:intergenic 50.0%
GCCCTTTCCGTCATATTCTG+AGG + chr1_3:60170790-60170809 Msa0130120:three_prime_UTR 50.0%
!! ATAACTTTGGGGGTGCCACA+TGG - chr1_3:60170834-60170853 None:intergenic 50.0%
GGATCCTGTGTCTGTACTGC+TGG - chr1_3:60166795-60166814 None:intergenic 55.0%
GTCGTGTCCGGTGTTCATGT+CGG - chr1_3:60167087-60167106 None:intergenic 55.0%
AACTCTGGTATGGGGGGGTA+CGG - chr1_3:60167487-60167506 None:intergenic 55.0%
! TGCAGGTGTTGCGATGGAGT+TGG + chr1_3:60168689-60168708 Msa0130120:intron 55.0%
! AGGTGTTGCGATGGAGTTGG+AGG + chr1_3:60168692-60168711 Msa0130120:intron 55.0%
AAAGCCTCGAGGACCTGGAA+TGG + chr1_3:60168806-60168825 Msa0130120:CDS 55.0%
! TGGGCAGATTTTTGCGGAGC+AGG + chr1_3:60168854-60168873 Msa0130120:CDS 55.0%
CGTAGAAGACACCTGCCTTC+AGG - chr1_3:60169314-60169333 None:intergenic 55.0%
CAGGGACCTGAGTAGTTGAG+TGG - chr1_3:60169368-60169387 None:intergenic 55.0%
TTCCTACTCCCGAGGGTGAT+TGG + chr1_3:60169672-60169691 Msa0130120:CDS 55.0%
AACCAATCACCCTCGGGAGT+AGG - chr1_3:60169677-60169696 None:intergenic 55.0%
GGCCGCAATATTTACCTCGC+CGG - chr1_3:60170423-60170442 None:intergenic 55.0%
GTTTGCGTAGACCGCGATTC+GGG - chr1_3:60170444-60170463 None:intergenic 55.0%
CGGACACGCGTCCTAATCTG+AGG + chr1_3:60167181-60167200 Msa0130120:intron 60.0%
GCACGGACGCTCCTCAGATT+AGG - chr1_3:60167195-60167214 None:intergenic 60.0%
!! GAGGAGCGTCCGTGCTTCAT+AGG + chr1_3:60167200-60167219 Msa0130120:intron 60.0%
AAGGTGTGACGCCGTTGAGG+AGG + chr1_3:60167714-60167733 Msa0130120:intron 60.0%
AGCAGCACCCGAGACTGCAA+TGG - chr1_3:60168340-60168359 None:intergenic 60.0%
! ATTGCAGTCTCGGGTGCTGC+TGG + chr1_3:60168339-60168358 Msa0130120:CDS 60.0%
AGGACCTGGAATGGAGCGTG+CGG + chr1_3:60168815-60168834 Msa0130120:CDS 60.0%
AAAGCCGCACGCTCCATTCC+AGG - chr1_3:60168822-60168841 None:intergenic 60.0%
GTGTAGCTAGCCCTGAAGGC+AGG + chr1_3:60169300-60169319 Msa0130120:intron 60.0%
!! GACGGGCAACCCATCGATTC+TGG - chr1_3:60169403-60169422 None:intergenic 60.0%
ATGCGCATGGGTCCCGACAT+TGG - chr1_3:60169821-60169840 None:intergenic 60.0%
! CCTGGGAGCATGGTATCACC+AGG - chr1_3:60170557-60170576 None:intergenic 60.0%
CCTGGTGATACCATGCTCCC+AGG + chr1_3:60170554-60170573 Msa0130120:CDS 60.0%
GGCGCCAGCAGTACAGACAC+AGG + chr1_3:60166788-60166807 Msa0130120:CDS 65.0%
ACGACACCGACACGCCGACA+CGG + chr1_3:60167102-60167121 Msa0130120:intron 65.0%
TGCAGCCGCAATTGCGGGTG+CGG + chr1_3:60167755-60167774 Msa0130120:intron 65.0%
GCAGTCCGCACCCGCAATTG+CGG - chr1_3:60167763-60167782 None:intergenic 65.0%
GGTGCAAAGCCTCGAGGACC+TGG + chr1_3:60168801-60168820 Msa0130120:CDS 65.0%
CGCTCCATTCCAGGTCCTCG+AGG - chr1_3:60168813-60168832 None:intergenic 65.0%
TGTGGCTCACCTAACCGGCG+AGG + chr1_3:60170406-60170425 Msa0130120:CDS 65.0%
!! CGGCGTGTCGGTGTCGTGTC+CGG - chr1_3:60167099-60167118 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 60166093 60171295 60166093 ID=Msa0130120;Name=Msa0130120
chr1_3 mRNA 60166093 60171295 60166093 ID=Msa0130120-mRNA-1;Parent=Msa0130120;Name=Msa0130120-mRNA-1;_AED=0.11;_eAED=0.11;_QI=439|0.91|0.92|1|1|1|13|709|462
chr1_3 exon 60166093 60166692 60166093 ID=Msa0130120-mRNA-1:exon:19738;Parent=Msa0130120-mRNA-1
chr1_3 exon 60166779 60166869 60166779 ID=Msa0130120-mRNA-1:exon:19739;Parent=Msa0130120-mRNA-1
chr1_3 exon 60168303 60168389 60168303 ID=Msa0130120-mRNA-1:exon:19740;Parent=Msa0130120-mRNA-1
chr1_3 exon 60168492 60168576 60168492 ID=Msa0130120-mRNA-1:exon:19741;Parent=Msa0130120-mRNA-1
chr1_3 exon 60168694 60168875 60168694 ID=Msa0130120-mRNA-1:exon:19742;Parent=Msa0130120-mRNA-1
chr1_3 exon 60168965 60169035 60168965 ID=Msa0130120-mRNA-1:exon:19743;Parent=Msa0130120-mRNA-1
chr1_3 exon 60169120 60169210 60169120 ID=Msa0130120-mRNA-1:exon:19744;Parent=Msa0130120-mRNA-1
chr1_3 exon 60169306 60169482 60169306 ID=Msa0130120-mRNA-1:exon:19745;Parent=Msa0130120-mRNA-1
chr1_3 exon 60169584 60169781 60169584 ID=Msa0130120-mRNA-1:exon:19746;Parent=Msa0130120-mRNA-1
chr1_3 exon 60169991 60170059 60169991 ID=Msa0130120-mRNA-1:exon:19747;Parent=Msa0130120-mRNA-1
chr1_3 exon 60170140 60170208 60170140 ID=Msa0130120-mRNA-1:exon:19748;Parent=Msa0130120-mRNA-1
chr1_3 exon 60170374 60170427 60170374 ID=Msa0130120-mRNA-1:exon:19749;Parent=Msa0130120-mRNA-1
chr1_3 exon 60170533 60171295 60170533 ID=Msa0130120-mRNA-1:exon:19750;Parent=Msa0130120-mRNA-1
chr1_3 five_prime_UTR 60166093 60166531 60166093 ID=Msa0130120-mRNA-1:five_prime_utr;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60166532 60166692 60166532 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60166779 60166869 60166779 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60168303 60168389 60168303 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60168492 60168576 60168492 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60168694 60168875 60168694 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60168965 60169035 60168965 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60169120 60169210 60169120 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60169306 60169482 60169306 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60169584 60169781 60169584 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60169991 60170059 60169991 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60170140 60170208 60170140 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60170374 60170427 60170374 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 CDS 60170533 60170586 60170533 ID=Msa0130120-mRNA-1:cds;Parent=Msa0130120-mRNA-1
chr1_3 three_prime_UTR 60170587 60171295 60170587 ID=Msa0130120-mRNA-1:three_prime_utr;Parent=Msa0130120-mRNA-1
Gene Sequence

>Msa0130120

ATGGCTCTGACACAGTTAAACAACACTTGCTCAAAAACTCAACTTCACTCATCATCACAACTCTCATTTCTCTCTAGGACTCTTCCTAGGCACCATCACTGTACTTTAGCACCACTTCACAGAACTCAACATGCTAGAATTTCTTGTTCTGTTGCACCAAATCAAGTGCAGGCGCCAGCAGTACAGACACAGGATCCCAAGAGTAAGCCTGATTGCTATGGTGTCTTCTGCCTTACCTATGATTTGAAGGCTGAAGAGGAGACAAAATCCTGGAAGAAATTAATTACCATTGCAGTCTCGGGTGCTGCTGGAATGATTTCCAATCATCTACTTTTCAAGCTTGCATCTGGTGAAGTTTTTGGTCCAAATCAACCTATTGCTCTGAAATTATTAGGATCGGAAAGGTCATTGCAAGCTCTTGAAGGTGTTGCGATGGAGTTGGAGGACTCTTTATTTCCTTTGCTGAGGGAAGTTGTTATTAGCATTGATCCTTATGAGGTGTTCCAAGATGCAGAATGGGCTTTGCTAATAGGTGCAAAGCCTCGAGGACCTGGAATGGAGCGTGCGGCTTTGCTAGACATAAATGGGCAGATTTTTGCGGAGCAGGGAAAAGCACTCAATGCGGTTGCATCTCGCAATGTCAAAGTTATAGTCGTGGGAAACCCTTGCAATACAAATGCATTAATATGCTTGAAGAATGCTCCAAATATTCCTGCAAAAAATTTCCATGCTTTAACTCGTTTAGATGAGAACAGGGCAAAATGTCAGCTAGCCCTGAAGGCAGGTGTCTTCTACGATAAAGTGTCAAATATGACAATATGGGGAAACCACTCAACTACTCAGGTCCCTGACTTCTTAAATGCCAGAATCGATGGGTTGCCCGTCAAAGAAGTGATCAAGGATCATAAATGGTTAGAGGAAGAGTTCACTGAAAAAGTTCAAAAGAGAGGTGGTGCACTTATTCAAAAATGGGGAAGATCATCTGCTGCATCGACTTCTGTGTCTATAGTTGATGCCATACGATCTTTGATCATTCCTACTCCCGAGGGTGATTGGTTTTCTACTGGTGTAAGTTTGTATTTCTTAAACAACCTTGTGTATTTACTTGATATAGAATTGGATGATCTTTTCAGAAAGATGCAAGTGTATACCACTGGAAATCCTTATGGAATAGCTGAAGATATTGTTTTCAGTATGCCGTGTCGATCAAAGGGAGATGGTGATTATGAACTTGTCAAGGATGTTATATTTGATGACTACCTACGACAGAAATTAGCCAAGACAGAAGCTGAGTTATTGGCGGAGAAAAAATGTGTGGCTCACCTAACCGGCGAGGGGATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCAGGAGAAATGTAA

Protein sequence

>Msa0130120

MALTQLNNTCSKTQLHSSSQLSFLSRTLPRHHHCTLAPLHRTQHARISCSVAPNQVQAPAVQTQDPKSKPDCYGVFCLTYDLKAEEETKSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGMERAALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDHKWLEEEFTEKVQKRGGALIQKWGRSSAASTSVSIVDAIRSLIIPTPEGDWFSTGVSLYFLNNLVYLLDIELDDLFRKMQVYTTGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM*