Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386150 | XP_003625811.1 | 99.284 | 419 | 3 | 0 | 1 | 419 | 1 | 419 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386150 | sp|Q9ZW88|FBL34_ARATH | 63.007 | 419 | 155 | 0 | 1 | 419 | 1 | 419 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386150 | G7L632 | 99.284 | 419 | 3 | 0 | 1 | 419 | 1 | 419 | 0.0 | 845 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087250 | Msa1386150 | 0.810906 | 9.129169e-51 | -8.615850e-47 |
| Msa1376520 | Msa1386150 | 0.801903 | 7.229933e-49 | -8.615850e-47 |
| Msa1386150 | Msa1400940 | 0.823584 | 1.280301e-53 | -8.615850e-47 |
| Msa1386150 | Msa1429190 | 0.803818 | 2.907049e-49 | -8.615850e-47 |
| Msa1386150 | Msa1449510 | -0.807360 | 5.250787e-50 | -8.615850e-47 |
| Msa0621870 | Msa1386150 | -0.811530 | 6.686613e-51 | -8.615850e-47 |
| Msa0660160 | Msa1386150 | -0.806571 | 7.711471e-50 | -8.615850e-47 |
| Msa0663580 | Msa1386150 | -0.810595 | 1.065908e-50 | -8.615850e-47 |
| Msa0692710 | Msa1386150 | -0.805590 | 1.240263e-49 | -8.615850e-47 |
| Msa0121080 | Msa1386150 | -0.811492 | 6.815027e-51 | -8.615850e-47 |
| Msa0143170 | Msa1386150 | 0.848864 | 4.670504e-60 | -8.615850e-47 |
| Msa0224980 | Msa1386150 | -0.800464 | 1.423444e-48 | -8.615850e-47 |
| Msa0225030 | Msa1386150 | -0.805586 | 1.242590e-49 | -8.615850e-47 |
| Msa1229880 | Msa1386150 | -0.803354 | 3.628515e-49 | -8.615850e-47 |
| Msa1258600 | Msa1386150 | 0.822503 | 2.287258e-53 | -8.615850e-47 |
| Msa1265990 | Msa1386150 | -0.811560 | 6.586232e-51 | -8.615850e-47 |
| Msa1298440 | Msa1386150 | 0.822954 | 1.796286e-53 | -8.615850e-47 |
| Msa1336130 | Msa1386150 | 0.983216 | 3.838714e-157 | -8.615850e-47 |
| Msa0365350 | Msa1386150 | -0.812451 | 4.212596e-51 | -8.615850e-47 |
| Msa0368620 | Msa1386150 | 0.801520 | 8.663569e-49 | -8.615850e-47 |
| Msa0369660 | Msa1386150 | 0.828520 | 8.589917e-55 | -8.615850e-47 |
| Msa0378730 | Msa1386150 | 0.804974 | 1.669229e-49 | -8.615850e-47 |
| Msa0385870 | Msa1386150 | -0.802136 | 6.474994e-49 | -8.615850e-47 |
| Msa0426490 | Msa1386150 | 0.800345 | 1.505742e-48 | -8.615850e-47 |
| Msa0427850 | Msa1386150 | 0.815049 | 1.128199e-51 | -8.615850e-47 |
| Msa0463890 | Msa1386150 | 0.835753 | 1.396669e-56 | -8.615850e-47 |
| Msa0474080 | Msa1386150 | 0.815850 | 7.484466e-52 | -8.615850e-47 |
| Msa0480260 | Msa1386150 | 0.801369 | 9.303855e-49 | -8.615850e-47 |
| Msa0482360 | Msa1386150 | 0.820886 | 5.410769e-53 | -8.615850e-47 |
| Msa1038040 | Msa1386150 | -0.803619 | 3.197056e-49 | -8.615850e-47 |
| Msa0249670 | Msa1386150 | -0.809962 | 1.459538e-50 | -8.615850e-47 |
| Msa0311130 | Msa1386150 | -0.804637 | 1.963258e-49 | -8.615850e-47 |
| Msa1118890 | Msa1386150 | -0.803353 | 3.631060e-49 | -8.615850e-47 |
| Msa1158540 | Msa1386150 | -0.804032 | 2.624301e-49 | -8.615850e-47 |
| Msa1164670 | Msa1386150 | 0.944266 | 2.674841e-103 | -8.615850e-47 |
| Msa1223600 | Msa1386150 | -0.815244 | 1.020876e-51 | -8.615850e-47 |
| Msa0504640 | Msa1386150 | -0.800457 | 1.428623e-48 | -8.615850e-47 |
| Msa0846180 | Msa1386150 | -0.800942 | 1.137137e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386150 | MtrunA17_Chr7g0266221 | 99.284 | 419 | 3 | 0 | 1 | 419 | 1 | 419 | 0.0 | 845 |
| Msa1386150 | MtrunA17_Chr1g0178681 | 71.360 | 419 | 120 | 0 | 1 | 419 | 1 | 419 | 0.0 | 589 |
| Msa1386150 | MtrunA17_Chr4g0026391 | 63.723 | 419 | 152 | 0 | 1 | 419 | 2 | 420 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386150 | AT1G67190.1 | 63.007 | 419 | 155 | 0 | 1 | 419 | 1 | 419 | 0.0 | 528 |
| Msa1386150 | AT1G67190.2 | 63.007 | 419 | 155 | 0 | 1 | 419 | 1 | 419 | 0.0 | 528 |
Find 60 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAATGATATTGAAATT+AGG | 0.193329 | tig0020787:+62968 | None:intergenic |
| AATCATGAATTCAGTGAATT+TGG | 0.195737 | tig0020787:+62124 | None:intergenic |
| TCTCAATGATATTGAAATTA+GGG | 0.201362 | tig0020787:+62969 | None:intergenic |
| GAATCTGACATAGCGATTTC+TGG | 0.230502 | tig0020787:+62761 | None:intergenic |
| AGAGCAAATTTCGCGATATA+GGG | 0.320402 | tig0020787:+63159 | None:intergenic |
| CATCCTTAACTTGCAAGAAA+TGG | 0.324453 | tig0020787:-63237 | Msa1386150:CDS |
| AAAGATGGAGTGCTTCATTA+TGG | 0.324477 | tig0020787:-62326 | Msa1386150:CDS |
| TAGAGCAAATTTCGCGATAT+AGG | 0.327459 | tig0020787:+63158 | None:intergenic |
| AGTTTGGGTAGCTGGACTTT+TGG | 0.334910 | tig0020787:-62228 | Msa1386150:CDS |
| CTGTTACCCCTGTCATTGCT+TGG | 0.349306 | tig0020787:-63045 | Msa1386150:CDS |
| ATGTATTGAATGAAAGAGTT+TGG | 0.353897 | tig0020787:+63191 | None:intergenic |
| ATAGACAAGGTTTCAAGTTT+CGG | 0.358073 | tig0020787:+62791 | None:intergenic |
| TCTCCATTTCTTGCAAGTTA+AGG | 0.360964 | tig0020787:+63234 | None:intergenic |
| ATCTTTCAAGTCATAACTTA+AGG | 0.368328 | tig0020787:+62343 | None:intergenic |
| GCTTAGCAGCTCTTCTTTGA+AGG | 0.394764 | tig0020787:-62723 | Msa1386150:CDS |
| TTAAGTTATGACTTGAAAGA+TGG | 0.408134 | tig0020787:-62341 | Msa1386150:CDS |
| CTTGGCTAGCAATCCTATCT+CGG | 0.423380 | tig0020787:-62915 | Msa1386150:CDS |
| TGTTAGGCGCTGCAATCCTT+TGG | 0.433874 | tig0020787:+63096 | None:intergenic |
| GTATCATATTATCCCATCTT+GGG | 0.437104 | tig0020787:-63282 | Msa1386150:CDS |
| GTGCTTCATTATGGCTTGCA+AGG | 0.446222 | tig0020787:-62317 | Msa1386150:CDS |
| CGAAATTTGCTCTAGTCACT+TGG | 0.446849 | tig0020787:-63149 | Msa1386150:CDS |
| ATGATACCGACCACTTCAAC+AGG | 0.448381 | tig0020787:+63298 | None:intergenic |
| AAGGAAAGGTGCGTTAATCT+AGG | 0.450642 | tig0020787:+62362 | None:intergenic |
| TACATAAGCCAAGCAATGAC+AGG | 0.467063 | tig0020787:+63037 | None:intergenic |
| TATCCCATCTTGGGTCTGCT+AGG | 0.472254 | tig0020787:-63273 | Msa1386150:CDS |
| GGTATCATATTATCCCATCT+TGG | 0.475174 | tig0020787:-63283 | Msa1386150:CDS |
| ATCCCATCTTGGGTCTGCTA+GGG | 0.476732 | tig0020787:-63272 | Msa1386150:CDS |
| CATCATCCATGAAAATTGTT+AGG | 0.477751 | tig0020787:+63080 | None:intergenic |
| TCTAGGAAAACAAACAGATA+TGG | 0.480581 | tig0020787:+62379 | None:intergenic |
| TTCGGCTCAACACCCGAGAT+AGG | 0.481385 | tig0020787:+62902 | None:intergenic |
| CATCCCTAGCAGACCCAAGA+TGG | 0.487907 | tig0020787:+63269 | None:intergenic |
| TGCTTCATTATGGCTTGCAA+GGG | 0.506316 | tig0020787:-62316 | Msa1386150:CDS |
| CAAGGAAATTTATGATACTT+CGG | 0.514673 | tig0020787:+62884 | None:intergenic |
| GTTCGAGTTTGAATATGAGT+AGG | 0.522810 | tig0020787:-62072 | None:intergenic |
| GATCAATTCAAAAGCATCAA+AGG | 0.535278 | tig0020787:+62619 | None:intergenic |
| TTGGCTAGCAATCCTATCTC+GGG | 0.539654 | tig0020787:-62914 | Msa1386150:CDS |
| CTCAATGATATTGAAATTAG+GGG | 0.540853 | tig0020787:+62970 | None:intergenic |
| TGTGTAACTTCATATTTATG+TGG | 0.543217 | tig0020787:-62502 | Msa1386150:CDS |
| TCAAGTCATAACTTAAGGAA+AGG | 0.545749 | tig0020787:+62348 | None:intergenic |
| TATTATCTCCAATGTCAAGA+TGG | 0.549282 | tig0020787:+62549 | None:intergenic |
| GCAAGAAATGGAGAGAAGCT+TGG | 0.560253 | tig0020787:-63225 | Msa1386150:CDS |
| AGTGTCATCCATCTTGACAT+TGG | 0.562714 | tig0020787:-62557 | Msa1386150:CDS |
| TACACACATCTACGATCTCA+AGG | 0.565105 | tig0020787:+62519 | None:intergenic |
| TTTCATTCAATACATCTGAC+TGG | 0.565276 | tig0020787:-63183 | Msa1386150:CDS |
| AATCGCTATGTCAGATTCAG+AGG | 0.571141 | tig0020787:-62756 | Msa1386150:CDS |
| ACTGAATTCATGATTCAACT+AGG | 0.580130 | tig0020787:-62116 | Msa1386150:CDS |
| ATCCCTAGCAGACCCAAGAT+GGG | 0.587597 | tig0020787:+63270 | None:intergenic |
| GAGCAAATTTCGCGATATAG+GGG | 0.592223 | tig0020787:+63160 | None:intergenic |
| GGAGGATCTTCCTGTTGAAG+TGG | 0.592625 | tig0020787:-63308 | Msa1386150:CDS |
| AACGACAGCGACTTCAAGCA+AGG | 0.592920 | tig0020787:+62866 | None:intergenic |
| ATATCATTGAGAAATGCAGC+AGG | 0.597773 | tig0020787:-62958 | Msa1386150:CDS |
| TTCTGGACAAACAATAGACA+AGG | 0.600718 | tig0020787:+62778 | None:intergenic |
| TGCTTGGCTTATGTATACGA+GGG | 0.608384 | tig0020787:-63029 | Msa1386150:CDS |
| TATTGAATGAAAGAGTTTGG+AGG | 0.609653 | tig0020787:+63194 | None:intergenic |
| TGATAAACTCATATTAGTGG+CGG | 0.615767 | tig0020787:-62675 | Msa1386150:CDS |
| ACATAAGCCAAGCAATGACA+GGG | 0.628082 | tig0020787:+63038 | None:intergenic |
| GATCTTCCTGTTGAAGTGGT+CGG | 0.634333 | tig0020787:-63304 | Msa1386150:CDS |
| TTGCTTGGCTTATGTATACG+AGG | 0.648455 | tig0020787:-63030 | Msa1386150:CDS |
| CGAGATAGGATTGCTAGCCA+AGG | 0.649589 | tig0020787:+62916 | None:intergenic |
| CATAAGCCAAGCAATGACAG+GGG | 0.741525 | tig0020787:+63039 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTCAATGATATTGAAATTA+GGG | + | tig0020787:62417-62436 | None:intergenic | 20.0% |
| !! | TTCTCAATGATATTGAAATT+AGG | + | tig0020787:62418-62437 | None:intergenic | 20.0% |
| !!! | TTTTGATAAACTCATATTAG+TGG | - | tig0020787:62705-62724 | Msa1386150:CDS | 20.0% |
| !! | TCTCAATGATATTGAAATTA+GGG | + | tig0020787:62417-62436 | None:intergenic | 20.0% |
| !! | TTCTCAATGATATTGAAATT+AGG | + | tig0020787:62418-62437 | None:intergenic | 20.0% |
| !!! | TTTTGATAAACTCATATTAG+TGG | - | tig0020787:62705-62724 | Msa1386150:CDS | 20.0% |
| ! | ATGTATTGAATGAAAGAGTT+TGG | + | tig0020787:62195-62214 | None:intergenic | 25.0% |
| ! | CTCAATGATATTGAAATTAG+GGG | + | tig0020787:62416-62435 | None:intergenic | 25.0% |
| ! | CAAGGAAATTTATGATACTT+CGG | + | tig0020787:62502-62521 | None:intergenic | 25.0% |
| !! | TGCTTTTGAATTGATCAATA+AGG | - | tig0020787:62771-62790 | Msa1386150:CDS | 25.0% |
| !! | GCTTTTGAATTGATCAATAA+GGG | - | tig0020787:62772-62791 | Msa1386150:CDS | 25.0% |
| !! | CTTTTGAATTGATCAATAAG+GGG | - | tig0020787:62773-62792 | Msa1386150:CDS | 25.0% |
| ! | TGTGTAACTTCATATTTATG+TGG | - | tig0020787:62881-62900 | Msa1386150:CDS | 25.0% |
| !! | ATCTTTCAAGTCATAACTTA+AGG | + | tig0020787:63043-63062 | None:intergenic | 25.0% |
| ! | TTAAGTTATGACTTGAAAGA+TGG | - | tig0020787:63042-63061 | Msa1386150:CDS | 25.0% |
| ! | ATGTCCTAATCTTAAAAAGA+TGG | - | tig0020787:63182-63201 | Msa1386150:CDS | 25.0% |
| !!! | ATGACCATCTTTTTAAGATT+AGG | + | tig0020787:63189-63208 | None:intergenic | 25.0% |
| ! | CTTAAAAAGATGGTCATTTA+TGG | - | tig0020787:63192-63211 | Msa1386150:CDS | 25.0% |
| ! | AATCATGAATTCAGTGAATT+TGG | + | tig0020787:63262-63281 | None:intergenic | 25.0% |
| ! | ATGTATTGAATGAAAGAGTT+TGG | + | tig0020787:62195-62214 | None:intergenic | 25.0% |
| ! | CTCAATGATATTGAAATTAG+GGG | + | tig0020787:62416-62435 | None:intergenic | 25.0% |
| ! | CAAGGAAATTTATGATACTT+CGG | + | tig0020787:62502-62521 | None:intergenic | 25.0% |
| !! | TGCTTTTGAATTGATCAATA+AGG | - | tig0020787:62771-62790 | Msa1386150:CDS | 25.0% |
| !! | GCTTTTGAATTGATCAATAA+GGG | - | tig0020787:62772-62791 | Msa1386150:CDS | 25.0% |
| !! | CTTTTGAATTGATCAATAAG+GGG | - | tig0020787:62773-62792 | Msa1386150:CDS | 25.0% |
| ! | TGTGTAACTTCATATTTATG+TGG | - | tig0020787:62881-62900 | Msa1386150:CDS | 25.0% |
| !! | ATCTTTCAAGTCATAACTTA+AGG | + | tig0020787:63043-63062 | None:intergenic | 25.0% |
| ! | TTAAGTTATGACTTGAAAGA+TGG | - | tig0020787:63042-63061 | Msa1386150:CDS | 25.0% |
| ! | ATGTCCTAATCTTAAAAAGA+TGG | - | tig0020787:63182-63201 | Msa1386150:CDS | 25.0% |
| !!! | ATGACCATCTTTTTAAGATT+AGG | + | tig0020787:63189-63208 | None:intergenic | 25.0% |
| ! | CTTAAAAAGATGGTCATTTA+TGG | - | tig0020787:63192-63211 | Msa1386150:CDS | 25.0% |
| ! | AATCATGAATTCAGTGAATT+TGG | + | tig0020787:63262-63281 | None:intergenic | 25.0% |
| GTATCATATTATCCCATCTT+GGG | - | tig0020787:62101-62120 | Msa1386150:CDS | 30.0% | |
| TATTGAATGAAAGAGTTTGG+AGG | + | tig0020787:62192-62211 | None:intergenic | 30.0% | |
| TTTCATTCAATACATCTGAC+TGG | - | tig0020787:62200-62219 | Msa1386150:CDS | 30.0% | |
| !!! | TGTACACTTTTTCAAACCAA+AGG | - | tig0020787:62271-62290 | Msa1386150:CDS | 30.0% |
| CATCATCCATGAAAATTGTT+AGG | + | tig0020787:62306-62325 | None:intergenic | 30.0% | |
| !! | ATAGACAAGGTTTCAAGTTT+CGG | + | tig0020787:62595-62614 | None:intergenic | 30.0% |
| TGATAAACTCATATTAGTGG+CGG | - | tig0020787:62708-62727 | Msa1386150:CDS | 30.0% | |
| !! | GATCAATTCAAAAGCATCAA+AGG | + | tig0020787:62767-62786 | None:intergenic | 30.0% |
| TATTATCTCCAATGTCAAGA+TGG | + | tig0020787:62837-62856 | None:intergenic | 30.0% | |
| CGTCAAAGTTAAAAAAGCTT+CGG | - | tig0020787:62932-62951 | Msa1386150:CDS | 30.0% | |
| TCTAGGAAAACAAACAGATA+TGG | + | tig0020787:63007-63026 | None:intergenic | 30.0% | |
| TCAAGTCATAACTTAAGGAA+AGG | + | tig0020787:63038-63057 | None:intergenic | 30.0% | |
| !!! | AATGTGGTTGTTTTAGAACT+TGG | - | tig0020787:63105-63124 | Msa1386150:CDS | 30.0% |
| ACTGAATTCATGATTCAACT+AGG | - | tig0020787:63267-63286 | Msa1386150:CDS | 30.0% | |
| GTATCATATTATCCCATCTT+GGG | - | tig0020787:62101-62120 | Msa1386150:CDS | 30.0% | |
| TATTGAATGAAAGAGTTTGG+AGG | + | tig0020787:62192-62211 | None:intergenic | 30.0% | |
| TTTCATTCAATACATCTGAC+TGG | - | tig0020787:62200-62219 | Msa1386150:CDS | 30.0% | |
| !!! | TGTACACTTTTTCAAACCAA+AGG | - | tig0020787:62271-62290 | Msa1386150:CDS | 30.0% |
| CATCATCCATGAAAATTGTT+AGG | + | tig0020787:62306-62325 | None:intergenic | 30.0% | |
| !! | ATAGACAAGGTTTCAAGTTT+CGG | + | tig0020787:62595-62614 | None:intergenic | 30.0% |
| TGATAAACTCATATTAGTGG+CGG | - | tig0020787:62708-62727 | Msa1386150:CDS | 30.0% | |
| !! | GATCAATTCAAAAGCATCAA+AGG | + | tig0020787:62767-62786 | None:intergenic | 30.0% |
| TATTATCTCCAATGTCAAGA+TGG | + | tig0020787:62837-62856 | None:intergenic | 30.0% | |
| CGTCAAAGTTAAAAAAGCTT+CGG | - | tig0020787:62932-62951 | Msa1386150:CDS | 30.0% | |
| TCTAGGAAAACAAACAGATA+TGG | + | tig0020787:63007-63026 | None:intergenic | 30.0% | |
| TCAAGTCATAACTTAAGGAA+AGG | + | tig0020787:63038-63057 | None:intergenic | 30.0% | |
| !!! | AATGTGGTTGTTTTAGAACT+TGG | - | tig0020787:63105-63124 | Msa1386150:CDS | 30.0% |
| ACTGAATTCATGATTCAACT+AGG | - | tig0020787:63267-63286 | Msa1386150:CDS | 30.0% | |
| GGTATCATATTATCCCATCT+TGG | - | tig0020787:62100-62119 | Msa1386150:CDS | 35.0% | |
| !! | CATCCTTAACTTGCAAGAAA+TGG | - | tig0020787:62146-62165 | Msa1386150:CDS | 35.0% |
| TCTCCATTTCTTGCAAGTTA+AGG | + | tig0020787:62152-62171 | None:intergenic | 35.0% | |
| AGAGCAAATTTCGCGATATA+GGG | + | tig0020787:62227-62246 | None:intergenic | 35.0% | |
| TAGAGCAAATTTCGCGATAT+AGG | + | tig0020787:62228-62247 | None:intergenic | 35.0% | |
| ATATCATTGAGAAATGCAGC+AGG | - | tig0020787:62425-62444 | Msa1386150:CDS | 35.0% | |
| TTCTGGACAAACAATAGACA+AGG | + | tig0020787:62608-62627 | None:intergenic | 35.0% | |
| ! | AAAGATGGAGTGCTTCATTA+TGG | - | tig0020787:63057-63076 | Msa1386150:CDS | 35.0% |
| ! | GTTGTCTTTTCTGATGAATG+TGG | - | tig0020787:63089-63108 | Msa1386150:CDS | 35.0% |
| !!! | TGGTTGTTTTAGAACTTGGA+TGG | - | tig0020787:63109-63128 | Msa1386150:CDS | 35.0% |
| ! | TCAGTGATCTTTTCTCAGTT+TGG | - | tig0020787:63139-63158 | Msa1386150:CDS | 35.0% |
| ! | CAGTGATCTTTTCTCAGTTT+GGG | - | tig0020787:63140-63159 | Msa1386150:CDS | 35.0% |
| GGTATCATATTATCCCATCT+TGG | - | tig0020787:62100-62119 | Msa1386150:CDS | 35.0% | |
| !! | CATCCTTAACTTGCAAGAAA+TGG | - | tig0020787:62146-62165 | Msa1386150:CDS | 35.0% |
| TCTCCATTTCTTGCAAGTTA+AGG | + | tig0020787:62152-62171 | None:intergenic | 35.0% | |
| AGAGCAAATTTCGCGATATA+GGG | + | tig0020787:62227-62246 | None:intergenic | 35.0% | |
| TAGAGCAAATTTCGCGATAT+AGG | + | tig0020787:62228-62247 | None:intergenic | 35.0% | |
| ATATCATTGAGAAATGCAGC+AGG | - | tig0020787:62425-62444 | Msa1386150:CDS | 35.0% | |
| TTCTGGACAAACAATAGACA+AGG | + | tig0020787:62608-62627 | None:intergenic | 35.0% | |
| ! | AAAGATGGAGTGCTTCATTA+TGG | - | tig0020787:63057-63076 | Msa1386150:CDS | 35.0% |
| ! | GTTGTCTTTTCTGATGAATG+TGG | - | tig0020787:63089-63108 | Msa1386150:CDS | 35.0% |
| !!! | TGGTTGTTTTAGAACTTGGA+TGG | - | tig0020787:63109-63128 | Msa1386150:CDS | 35.0% |
| ! | TCAGTGATCTTTTCTCAGTT+TGG | - | tig0020787:63139-63158 | Msa1386150:CDS | 35.0% |
| ! | CAGTGATCTTTTCTCAGTTT+GGG | - | tig0020787:63140-63159 | Msa1386150:CDS | 35.0% |
| GAGCAAATTTCGCGATATAG+GGG | + | tig0020787:62226-62245 | None:intergenic | 40.0% | |
| ! | CGAAATTTGCTCTAGTCACT+TGG | - | tig0020787:62234-62253 | Msa1386150:CDS | 40.0% |
| ACATAAGCCAAGCAATGACA+GGG | + | tig0020787:62348-62367 | None:intergenic | 40.0% | |
| TACATAAGCCAAGCAATGAC+AGG | + | tig0020787:62349-62368 | None:intergenic | 40.0% | |
| TTGCTTGGCTTATGTATACG+AGG | - | tig0020787:62353-62372 | Msa1386150:CDS | 40.0% | |
| TGCTTGGCTTATGTATACGA+GGG | - | tig0020787:62354-62373 | Msa1386150:CDS | 40.0% | |
| GAAATGCAGCAGGAAAAAGT+TGG | - | tig0020787:62435-62454 | Msa1386150:CDS | 40.0% | |
| !! | AAAGTTGGAGGTTTTGACCT+TGG | - | tig0020787:62450-62469 | Msa1386150:CDS | 40.0% |
| ! | TTTTGTTAGCATCTCAGCGT+TGG | - | tig0020787:62543-62562 | Msa1386150:CDS | 40.0% |
| GAATCTGACATAGCGATTTC+TGG | + | tig0020787:62625-62644 | None:intergenic | 40.0% | |
| AATCGCTATGTCAGATTCAG+AGG | - | tig0020787:62627-62646 | Msa1386150:CDS | 40.0% | |
| AGTGTCATCCATCTTGACAT+TGG | - | tig0020787:62826-62845 | Msa1386150:CDS | 40.0% | |
| TACACACATCTACGATCTCA+AGG | + | tig0020787:62867-62886 | None:intergenic | 40.0% | |
| AGTTAAAAAAGCTTCGGCTG+TGG | - | tig0020787:62938-62957 | Msa1386150:CDS | 40.0% | |
| ! | AAGGAAAGGTGCGTTAATCT+AGG | + | tig0020787:63024-63043 | None:intergenic | 40.0% |
| ! | TGCTTCATTATGGCTTGCAA+GGG | - | tig0020787:63067-63086 | Msa1386150:CDS | 40.0% |
| GAGCAAATTTCGCGATATAG+GGG | + | tig0020787:62226-62245 | None:intergenic | 40.0% | |
| ! | CGAAATTTGCTCTAGTCACT+TGG | - | tig0020787:62234-62253 | Msa1386150:CDS | 40.0% |
| ACATAAGCCAAGCAATGACA+GGG | + | tig0020787:62348-62367 | None:intergenic | 40.0% | |
| TACATAAGCCAAGCAATGAC+AGG | + | tig0020787:62349-62368 | None:intergenic | 40.0% | |
| TTGCTTGGCTTATGTATACG+AGG | - | tig0020787:62353-62372 | Msa1386150:CDS | 40.0% | |
| TGCTTGGCTTATGTATACGA+GGG | - | tig0020787:62354-62373 | Msa1386150:CDS | 40.0% | |
| GAAATGCAGCAGGAAAAAGT+TGG | - | tig0020787:62435-62454 | Msa1386150:CDS | 40.0% | |
| !! | AAAGTTGGAGGTTTTGACCT+TGG | - | tig0020787:62450-62469 | Msa1386150:CDS | 40.0% |
| ! | TTTTGTTAGCATCTCAGCGT+TGG | - | tig0020787:62543-62562 | Msa1386150:CDS | 40.0% |
| GAATCTGACATAGCGATTTC+TGG | + | tig0020787:62625-62644 | None:intergenic | 40.0% | |
| AATCGCTATGTCAGATTCAG+AGG | - | tig0020787:62627-62646 | Msa1386150:CDS | 40.0% | |
| AGTGTCATCCATCTTGACAT+TGG | - | tig0020787:62826-62845 | Msa1386150:CDS | 40.0% | |
| TACACACATCTACGATCTCA+AGG | + | tig0020787:62867-62886 | None:intergenic | 40.0% | |
| AGTTAAAAAAGCTTCGGCTG+TGG | - | tig0020787:62938-62957 | Msa1386150:CDS | 40.0% | |
| ! | AAGGAAAGGTGCGTTAATCT+AGG | + | tig0020787:63024-63043 | None:intergenic | 40.0% |
| ! | TGCTTCATTATGGCTTGCAA+GGG | - | tig0020787:63067-63086 | Msa1386150:CDS | 40.0% |
| GATCTTCCTGTTGAAGTGGT+CGG | - | tig0020787:62079-62098 | Msa1386150:CDS | 45.0% | |
| ATGATACCGACCACTTCAAC+AGG | + | tig0020787:62088-62107 | None:intergenic | 45.0% | |
| GCAAGAAATGGAGAGAAGCT+TGG | - | tig0020787:62158-62177 | Msa1386150:CDS | 45.0% | |
| ! | GCAGCGCCTAACAATTTTCA+TGG | - | tig0020787:62297-62316 | Msa1386150:CDS | 45.0% |
| CATAAGCCAAGCAATGACAG+GGG | + | tig0020787:62347-62366 | None:intergenic | 45.0% | |
| ATGCAGCAGGAAAAAGTTGG+AGG | - | tig0020787:62438-62457 | Msa1386150:CDS | 45.0% | |
| CTTGGCTAGCAATCCTATCT+CGG | - | tig0020787:62468-62487 | Msa1386150:CDS | 45.0% | |
| TTGGCTAGCAATCCTATCTC+GGG | - | tig0020787:62469-62488 | Msa1386150:CDS | 45.0% | |
| GCTTAGCAGCTCTTCTTTGA+AGG | - | tig0020787:62660-62679 | Msa1386150:CDS | 45.0% | |
| !!! | GAGTGTTGTTTTTGACGACG+AGG | - | tig0020787:62960-62979 | Msa1386150:CDS | 45.0% |
| !! | TGTTTTTGACGACGAGGATG+AGG | - | tig0020787:62966-62985 | Msa1386150:CDS | 45.0% |
| ! | GTGCTTCATTATGGCTTGCA+AGG | - | tig0020787:63066-63085 | Msa1386150:CDS | 45.0% |
| ! | CTTTTCTCAGTTTGGGTAGC+TGG | - | tig0020787:63147-63166 | Msa1386150:CDS | 45.0% |
| ! | AGTTTGGGTAGCTGGACTTT+TGG | - | tig0020787:63155-63174 | Msa1386150:CDS | 45.0% |
| GATCTTCCTGTTGAAGTGGT+CGG | - | tig0020787:62079-62098 | Msa1386150:CDS | 45.0% | |
| ATGATACCGACCACTTCAAC+AGG | + | tig0020787:62088-62107 | None:intergenic | 45.0% | |
| GCAAGAAATGGAGAGAAGCT+TGG | - | tig0020787:62158-62177 | Msa1386150:CDS | 45.0% | |
| ! | GCAGCGCCTAACAATTTTCA+TGG | - | tig0020787:62297-62316 | Msa1386150:CDS | 45.0% |
| CATAAGCCAAGCAATGACAG+GGG | + | tig0020787:62347-62366 | None:intergenic | 45.0% | |
| ATGCAGCAGGAAAAAGTTGG+AGG | - | tig0020787:62438-62457 | Msa1386150:CDS | 45.0% | |
| CTTGGCTAGCAATCCTATCT+CGG | - | tig0020787:62468-62487 | Msa1386150:CDS | 45.0% | |
| TTGGCTAGCAATCCTATCTC+GGG | - | tig0020787:62469-62488 | Msa1386150:CDS | 45.0% | |
| GCTTAGCAGCTCTTCTTTGA+AGG | - | tig0020787:62660-62679 | Msa1386150:CDS | 45.0% | |
| !!! | GAGTGTTGTTTTTGACGACG+AGG | - | tig0020787:62960-62979 | Msa1386150:CDS | 45.0% |
| !! | TGTTTTTGACGACGAGGATG+AGG | - | tig0020787:62966-62985 | Msa1386150:CDS | 45.0% |
| ! | GTGCTTCATTATGGCTTGCA+AGG | - | tig0020787:63066-63085 | Msa1386150:CDS | 45.0% |
| ! | CTTTTCTCAGTTTGGGTAGC+TGG | - | tig0020787:63147-63166 | Msa1386150:CDS | 45.0% |
| ! | AGTTTGGGTAGCTGGACTTT+TGG | - | tig0020787:63155-63174 | Msa1386150:CDS | 45.0% |
| GGAGGATCTTCCTGTTGAAG+TGG | - | tig0020787:62075-62094 | Msa1386150:CDS | 50.0% | |
| TATCCCATCTTGGGTCTGCT+AGG | - | tig0020787:62110-62129 | Msa1386150:CDS | 50.0% | |
| ATCCCATCTTGGGTCTGCTA+GGG | - | tig0020787:62111-62130 | Msa1386150:CDS | 50.0% | |
| ATCCCTAGCAGACCCAAGAT+GGG | + | tig0020787:62116-62135 | None:intergenic | 50.0% | |
| ! | TGTTAGGCGCTGCAATCCTT+TGG | + | tig0020787:62290-62309 | None:intergenic | 50.0% |
| CTGTTACCCCTGTCATTGCT+TGG | - | tig0020787:62338-62357 | Msa1386150:CDS | 50.0% | |
| CGAGATAGGATTGCTAGCCA+AGG | + | tig0020787:62470-62489 | None:intergenic | 50.0% | |
| AACGACAGCGACTTCAAGCA+AGG | + | tig0020787:62520-62539 | None:intergenic | 50.0% | |
| ! | TGGGTAGCTGGACTTTTGGA+AGG | - | tig0020787:63159-63178 | Msa1386150:CDS | 50.0% |
| GGAGGATCTTCCTGTTGAAG+TGG | - | tig0020787:62075-62094 | Msa1386150:CDS | 50.0% | |
| TATCCCATCTTGGGTCTGCT+AGG | - | tig0020787:62110-62129 | Msa1386150:CDS | 50.0% | |
| ATCCCATCTTGGGTCTGCTA+GGG | - | tig0020787:62111-62130 | Msa1386150:CDS | 50.0% | |
| ATCCCTAGCAGACCCAAGAT+GGG | + | tig0020787:62116-62135 | None:intergenic | 50.0% | |
| ! | TGTTAGGCGCTGCAATCCTT+TGG | + | tig0020787:62290-62309 | None:intergenic | 50.0% |
| CTGTTACCCCTGTCATTGCT+TGG | - | tig0020787:62338-62357 | Msa1386150:CDS | 50.0% | |
| CGAGATAGGATTGCTAGCCA+AGG | + | tig0020787:62470-62489 | None:intergenic | 50.0% | |
| AACGACAGCGACTTCAAGCA+AGG | + | tig0020787:62520-62539 | None:intergenic | 50.0% | |
| ! | TGGGTAGCTGGACTTTTGGA+AGG | - | tig0020787:63159-63178 | Msa1386150:CDS | 50.0% |
| CATCCCTAGCAGACCCAAGA+TGG | + | tig0020787:62117-62136 | None:intergenic | 55.0% | |
| TTCGGCTCAACACCCGAGAT+AGG | + | tig0020787:62484-62503 | None:intergenic | 55.0% | |
| CATCCCTAGCAGACCCAAGA+TGG | + | tig0020787:62117-62136 | None:intergenic | 55.0% | |
| TTCGGCTCAACACCCGAGAT+AGG | + | tig0020787:62484-62503 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020787 | gene | 62073 | 63332 | 62073 | ID=Msa1386150;Name=Msa1386150 |
| tig0020787 | mRNA | 62073 | 63332 | 62073 | ID=Msa1386150-mRNA-1;Parent=Msa1386150;Name=Msa1386150-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|-1|0|1|-1|1|1|0|419 |
| tig0020787 | exon | 62073 | 63332 | 62073 | ID=Msa1386150-mRNA-1:exon:10041;Parent=Msa1386150-mRNA-1 |
| tig0020787 | CDS | 62073 | 63332 | 62073 | ID=Msa1386150-mRNA-1:cds;Parent=Msa1386150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
