AlfalfaGEDB | Msa0504640

M. sativa cultivar zhongmu-4 / Msa0504640

KEGG: K17871
GO: GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005777 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031304 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0098573 GO:0104004
PFAM: PF07992.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504640	XP_013460271.1	99.008	504	4	1	1	503	1	504	0.0	1028

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504640	sp\|M0ZYF3\|INDA1_SOLTU	74.950	503	118	2	1	503	1	495	0.0	766

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504640	A0A072UXK7	99.008	504	4	1	1	503	1	504	0.0	1028

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0504640	0.820648	6.137754e-53	-8.615850e-47
Msa0000220	Msa0504640	0.852406	4.713023e-61	-8.615850e-47
Msa0000610	Msa0504640	0.818821	1.604458e-52	-8.615850e-47
Msa0001040	Msa0504640	0.849456	3.197158e-60	-8.615850e-47
Msa0001510	Msa0504640	0.876983	9.045681e-69	-8.615850e-47
Msa0001540	Msa0504640	0.809303	2.023073e-50	-8.615850e-47
Msa0002110	Msa0504640	0.848610	5.493038e-60	-8.615850e-47
Msa0002690	Msa0504640	0.899967	1.172311e-77	-8.615850e-47
Msa0002700	Msa0504640	0.892750	1.189780e-74	-8.615850e-47
Msa0003340	Msa0504640	0.847328	1.239854e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504640	MtrunA17_Chr3g0105191	99.008	504	4	1	1	503	1	504	0.0	1028
Msa0504640	MtrunA17_Chr5g0430321	77.822	505	106	3	1	503	1	501	0.0	795
Msa0504640	MtrunA17_Chr4g0048041	68.548	496	151	2	8	503	53	543	0.0	710
Msa0504640	MtrunA17_Chr2g0281111	39.521	334	187	8	54	377	42	370	9.37e-73	241
Msa0504640	MtrunA17_Chr2g0281111	36.364	121	66	4	388	503	464	578	9.65e-11	64.3
Msa0504640	MtrunA17_Chr4g0048381	39.938	323	181	7	65	377	51	370	3.67e-72	239
Msa0504640	MtrunA17_Chr4g0048381	35.537	121	67	4	388	503	464	578	8.18e-11	64.3
Msa0504640	MtrunA17_Chr4g0022591	40.683	322	176	7	66	377	56	372	4.20e-72	239
Msa0504640	MtrunA17_Chr4g0022591	33.793	145	68	5	375	503	445	577	7.04e-14	74.3
Msa0504640	MtrunA17_Chr4g0022601	37.883	359	196	10	65	407	44	391	3.97e-70	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504640	AT1G07180.1	72.994	511	129	2	1	503	1	510	0.0	759
Msa0504640	AT2G29990.1	73.674	509	127	4	1	503	1	508	0.0	746
Msa0504640	AT4G28220.2	39.198	324	181	6	69	381	52	370	5.55e-72	237
Msa0504640	AT4G28220.1	39.198	324	181	6	69	381	52	370	1.13e-71	238
Msa0504640	AT4G28220.1	36.885	122	66	4	387	503	456	571	1.45e-12	70.5
Msa0504640	AT4G21490.1	37.249	349	206	6	66	405	55	399	6.50e-64	218
Msa0504640	AT4G21490.2	37.429	350	203	7	66	405	55	398	1.67e-63	217
Msa0504640	AT4G05020.1	38.820	322	183	6	65	377	57	373	2.95e-63	216
Msa0504640	AT2G20800.1	39.506	324	182	6	63	377	60	378	3.27e-63	216
Msa0504640	AT2G20800.1	36.066	122	67	4	387	503	467	582	2.78e-12	69.7

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Find 114 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGGTAAAGAAGGTGC+AGG	0.572259	3_4:-49376144	Msa0504640:CDS
AAACCAAGAGTGGTTGTGCT+TGG	0.573517	3_4:-49378654	Msa0504640:CDS
AAACCTGAAGGATAATCATT+AGG	0.431748	3_4:+49378699	None:intergenic
AAAGAGGCGTAAACACCATA+TGG	0.494080	3_4:+49378553	None:intergenic
AAAGATTGAATAATTGGTGA+CGG	0.592765	3_4:+49376630	None:intergenic
AACCATAACTAGAACTATCA+TGG	0.503093	3_4:-49378868	Msa0504640:exon
AACCTTCCACCAGGAGCTTT+TGG	0.230258	3_4:+49376600	None:intergenic
AAGACCAACACTTCCAGCAT+TGG	0.547283	3_4:-49376386	Msa0504640:CDS
AAGCCTAATGATTATCCTTC+AGG	0.297969	3_4:-49378702	Msa0504640:CDS
AATAGGTTGGGAGCTGAAAT+GGG	0.487855	3_4:+49378743	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATAACTAGAACTATCA+TGG	-	chr3_4:49375811-49375830	Msa0504640:CDS	30.0%
GAAAAGTGAAAGATGGTAAA+AGG	+	chr3_4:49375913-49375932	Msa0504630:three_prime_UTR	30.0%
AAACCTGAAGGATAATCATT+AGG	+	chr3_4:49375983-49376002	Msa0504630:three_prime_UTR	30.0%
GACAAAATATGTTGAAGGAA+AGG	+	chr3_4:49376416-49376435	None:intergenic	30.0%
AGAAGGACAAAATATGTTGA+AGG	+	chr3_4:49376421-49376440	None:intergenic	30.0%
ACAGTTGAATCTGAATACTT+CGG	-	chr3_4:49376513-49376532	Msa0504640:intron	30.0%
CATCAGATAGCATCAAATTT+AGG	+	chr3_4:49377019-49377038	None:intergenic	30.0%
ATACCTCAATCAAAGTAACA+CGG	+	chr3_4:49377469-49377488	None:intergenic	30.0%
CATCTTTGGCATCAATAAAA+TGG	+	chr3_4:49377521-49377540	None:intergenic	30.0%
ATCATCTTAGAAGACATCTT+TGG	+	chr3_4:49377535-49377554	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	49375784	49378917	49375784	ID=Msa0504640;Name=Msa0504640
chr3_4	mRNA	49375784	49378917	49375784	ID=Msa0504640-mRNA-1;Parent=Msa0504640;Name=Msa0504640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=46\|0.42\|0.37\|1\|1\|1\|8\|0\|503
chr3_4	exon	49375784	49375936	49375784	ID=Msa0504640-mRNA-1:exon:10602;Parent=Msa0504640-mRNA-1
chr3_4	exon	49376029	49376208	49376029	ID=Msa0504640-mRNA-1:exon:10601;Parent=Msa0504640-mRNA-1
chr3_4	exon	49376381	49376495	49376381	ID=Msa0504640-mRNA-1:exon:10600;Parent=Msa0504640-mRNA-1
chr3_4	exon	49376603	49376766	49376603	ID=Msa0504640-mRNA-1:exon:10599;Parent=Msa0504640-mRNA-1
chr3_4	exon	49377046	49377111	49377046	ID=Msa0504640-mRNA-1:exon:10598;Parent=Msa0504640-mRNA-1
chr3_4	exon	49377217	49377377	49377217	ID=Msa0504640-mRNA-1:exon:10597;Parent=Msa0504640-mRNA-1
chr3_4	exon	49377657	49377870	49377657	ID=Msa0504640-mRNA-1:exon:10596;Parent=Msa0504640-mRNA-1
chr3_4	exon	49378413	49378917	49378413	ID=Msa0504640-mRNA-1:exon:10595;Parent=Msa0504640-mRNA-1
chr3_4	five_prime_UTR	49378872	49378917	49378872	ID=Msa0504640-mRNA-1:five_prime_utr;Parent=Msa0504640-mRNA-1
chr3_4	CDS	49378413	49378871	49378413	ID=Msa0504640-mRNA-1:cds;Parent=Msa0504640-mRNA-1
chr3_4	CDS	49377657	49377870	49377657	ID=Msa0504640-mRNA-1:cds;Parent=Msa0504640-mRNA-1
chr3_4	CDS	49377217	49377377	49377217	ID=Msa0504640-mRNA-1:cds;Parent=Msa0504640-mRNA-1
chr3_4	CDS	49377046	49377111	49377046	ID=Msa0504640-mRNA-1:cds;Parent=Msa0504640-mRNA-1
chr3_4	CDS	49376603	49376766	49376603	ID=Msa0504640-mRNA-1:cds;Parent=Msa0504640-mRNA-1
chr3_4	CDS	49376381	49376495	49376381	ID=Msa0504640-mRNA-1:cds;Parent=Msa0504640-mRNA-1
chr3_4	CDS	49376029	49376208	49376029	ID=Msa0504640-mRNA-1:cds;Parent=Msa0504640-mRNA-1
chr3_4	CDS	49375784	49375936	49375784	ID=Msa0504640-mRNA-1:cds;Parent=Msa0504640-mRNA-1

Gene Sequence

>Msa0504640

ATGGCTTGGTTAAGAAATCTCTCAAAATTTTCCAACAACATTAAATCATCTCAAAGACCAAATAAAACTGATCCATTTTTCCTTTTACCATCTTTCACTTTTCTCTCCCATTTCAGCTCCCAACCTATTGAGGAAAAGCATTATGTTAAGCCTAATGATTATCCTTCAGGTTTGGCACCAACAAAGCCTCATGAGAAACCAAGAGTGGTTGTGCTTGGTTCAGGTTGGGCTGGCTGCAGACTCATGAAGGGTTTGGACAGTAATATTTATGACATTGTTTGTGTCTCACCTAGGAACCATATGGTGTTTACGCCTCTTTTGGCTTCTACTTGTGTCGGAACTCTTGAGTTTAGATCAGTTGCTGAACCTATTGGAAGAATTCAACCTGCTATTTCTAGGGAACCTGGTTCTTATTTCTTTCTTGCCAATTGTACTGCCATTGATGCACATAACCATACGGTGCACTGTGAGACTGTAACTGATGGAGAGCAGACAATAGAACCTTGGAAGTTTACAGTCTCATATGATAAGCTAGTAATTGCACTAGGATCACATCCTTCTACTTTTGGAATTCAAGGAGTCAATGAACATGCCATTTTTCTTAGAGAAGTACATCATGCACAGGAAATTCGTCGGAAGTTGCTCCTAAATTTGATGCTATCTGATGTTCCAGGAATTTCTGAAGATGAGAAGCAAAGGCTTTTGCACTGTGTTGTTGTGGGAGGTGGTCCTACTGGAGTTGAATTCAGTGGTGAACTTAGCGACTTTATCATGAAGGATGTTCGCCAAAGATATACACATGTGAAGGATTACATCCGTGTTACTTTGATTGAGGCAAATGAGATATTATCTTCTTTTGATGACCGACTCAGGCTCTATGCTACCAAACAGTTGACAAAGTCAGGAGTTCGTCTTGTTCGTGGCATTGTGAAAGATGTTAAAGCTCAGAAGATTATCCTAAATGATGGTACTGAGGTTCCATTTGGTTTGCTGGTATGGTCTACTGGCGTTGGTCCGTCACCAATTATTCAATCTTTGGACCTCCCAAAAGCTCCTGGTGGAAGGATTGGTGTTGATGAGTGGCTTCGTGTTCCTTCGGTACAAGATGTGTTCTCAATAGGTGACTGCAGTGGATTTGTTGAAAGTACTGGAAGACCAACACTTCCAGCATTGGCCCAAGTGGCAGAGAGACAAGGTAAATTTTTAGCAAGTATGTTAAACAAAATAGGTAAAGAAGGTGCAGGTCATGCAAACAGTGCAAAAGAAATAGAACTTGGTGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTATTGGCAGATACAAGGCTCTTGTCGATCTTAGACAAAGCAAGGAGGGAAAAGGGTTAGCGCTGGCGGGAGTTTTTAGTTTTTTTATTTGGCGCTCGGCGTATATTACACGAGTTGTCAGCTGGAGGAACAGATTCTATGTATTTATCAACTGGATTACAACTCTTATATTTGGCCGTGATATAAGCAGACTATGA

Protein sequence

>Msa0504640

MAWLRNLSKFSNNIKSSQRPNKTDPFFLLPSFTFLSHFSSQPIEEKHYVKPNDYPSGLAPTKPHEKPRVVVLGSGWAGCRLMKGLDSNIYDIVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIGRIQPAISREPGSYFFLANCTAIDAHNHTVHCETVTDGEQTIEPWKFTVSYDKLVIALGSHPSTFGIQGVNEHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEDEKQRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYTHVKDYIRVTLIEANEILSSFDDRLRLYATKQLTKSGVRLVRGIVKDVKAQKIILNDGTEVPFGLLVWSTGVGPSPIIQSLDLPKAPGGRIGVDEWLRVPSVQDVFSIGDCSGFVESTGRPTLPALAQVAERQGKFLASMLNKIGKEGAGHANSAKEIELGDPFVYKHLGSMATIGRYKALVDLRQSKEGKGLALAGVFSFFIWRSAYITRVVSWRNRFYVFINWITTLIFGRDISRL*