Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164670 | XP_003625811.1 | 98.885 | 269 | 3 | 0 | 51 | 319 | 1 | 269 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164670 | sp|Q9ZW88|FBL34_ARATH | 64.684 | 269 | 95 | 0 | 51 | 319 | 1 | 269 | 1.74e-121 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164670 | G7L632 | 98.885 | 269 | 3 | 0 | 51 | 319 | 1 | 269 | 0.0 | 534 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0114960 | Msa1164670 | -0.808031 | 3.781396e-50 | -8.615850e-47 |
| Msa0621870 | Msa1164670 | -0.819574 | 1.081197e-52 | -8.615850e-47 |
| Msa0667710 | Msa1164670 | -0.814777 | 1.296167e-51 | -8.615850e-47 |
| Msa0726000 | Msa1164670 | -0.818412 | 1.986730e-52 | -8.615850e-47 |
| Msa0743630 | Msa1164670 | -0.802374 | 5.782102e-49 | -8.615850e-47 |
| Msa0121080 | Msa1164670 | -0.805920 | 1.057313e-49 | -8.615850e-47 |
| Msa0143170 | Msa1164670 | 0.887902 | 9.487215e-73 | -8.615850e-47 |
| Msa0190400 | Msa1164670 | -0.806579 | 7.681359e-50 | -8.615850e-47 |
| Msa0206600 | Msa1164670 | -0.801461 | 8.905276e-49 | -8.615850e-47 |
| Msa0225030 | Msa1164670 | -0.803270 | 3.776218e-49 | -8.615850e-47 |
| Msa0369660 | Msa1164670 | 0.815865 | 7.428017e-52 | -8.615850e-47 |
| Msa0378570 | Msa1164670 | -0.813639 | 2.311316e-51 | -8.615850e-47 |
| Msa0386390 | Msa1164670 | -0.808087 | 3.679599e-50 | -8.615850e-47 |
| Msa0427850 | Msa1164670 | 0.831796 | 1.362375e-55 | -8.615850e-47 |
| Msa0463890 | Msa1164670 | 0.833701 | 4.584915e-56 | -8.615850e-47 |
| Msa0474080 | Msa1164670 | 0.815933 | 7.170653e-52 | -8.615850e-47 |
| Msa0479790 | Msa1164670 | -0.806558 | 7.758390e-50 | -8.615850e-47 |
| Msa0482360 | Msa1164670 | 0.812572 | 3.963716e-51 | -8.615850e-47 |
| Msa1014530 | Msa1164670 | -0.823841 | 1.114567e-53 | -8.615850e-47 |
| Msa1041620 | Msa1164670 | -0.802929 | 4.443561e-49 | -8.615850e-47 |
| Msa1055490 | Msa1164670 | -0.806107 | 9.658806e-50 | -8.615850e-47 |
| Msa1081650 | Msa1164670 | -0.800023 | 1.750790e-48 | -8.615850e-47 |
| Msa1096280 | Msa1164670 | -0.817859 | 2.650601e-52 | -8.615850e-47 |
| Msa1106830 | Msa1164670 | -0.803775 | 2.968273e-49 | -8.615850e-47 |
| Msa0302220 | Msa1164670 | 0.810037 | 1.406606e-50 | -8.615850e-47 |
| Msa0311130 | Msa1164670 | -0.804904 | 1.726428e-49 | -8.615850e-47 |
| Msa0314980 | Msa1164670 | -0.823898 | 1.080905e-53 | -8.615850e-47 |
| Msa1164670 | Msa1223600 | -0.812806 | 3.521971e-51 | -8.615850e-47 |
| Msa1164670 | Msa1258600 | 0.830173 | 3.408475e-55 | -8.615850e-47 |
| Msa1164670 | Msa1265990 | -0.825127 | 5.552120e-54 | -8.615850e-47 |
| Msa1164670 | Msa1298440 | 0.832784 | 7.757548e-56 | -8.615850e-47 |
| Msa1164670 | Msa1336130 | 0.955174 | 5.564686e-113 | -8.615850e-47 |
| Msa1164670 | Msa1351370 | -0.824251 | 8.929674e-54 | -8.615850e-47 |
| Msa1164670 | Msa1356500 | -0.800791 | 1.220854e-48 | -8.615850e-47 |
| Msa1164670 | Msa1361090 | -0.804648 | 1.952713e-49 | -8.615850e-47 |
| Msa1164670 | Msa1376520 | 0.804512 | 2.085018e-49 | -8.615850e-47 |
| Msa1164670 | Msa1386150 | 0.944266 | 2.674841e-103 | -8.615850e-47 |
| Msa1164670 | Msa1400940 | 0.830892 | 2.272961e-55 | -8.615850e-47 |
| Msa1164670 | Msa1420630 | -0.817891 | 2.606382e-52 | -8.615850e-47 |
| Msa1164670 | Msa1425570 | -0.816999 | 4.138773e-52 | -8.615850e-47 |
| Msa1164670 | Msa1449510 | -0.807643 | 4.572711e-50 | -8.615850e-47 |
| Msa1164670 | Msa1451780 | -0.807363 | 5.243614e-50 | -8.615850e-47 |
| Msa1164670 | Msa1466170 | -0.814331 | 1.626951e-51 | -8.615850e-47 |
| Msa0498320 | Msa1164670 | -0.801899 | 7.243638e-49 | -8.615850e-47 |
| Msa0515830 | Msa1164670 | -0.807400 | 5.149097e-50 | -8.615850e-47 |
| Msa0516330 | Msa1164670 | -0.802116 | 6.536304e-49 | -8.615850e-47 |
| Msa0532910 | Msa1164670 | -0.819212 | 1.307503e-52 | -8.615850e-47 |
| Msa0846180 | Msa1164670 | -0.822486 | 2.308377e-53 | -8.615850e-47 |
| Msa0875130 | Msa1164670 | -0.810532 | 1.099999e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164670 | MtrunA17_Chr7g0266221 | 98.885 | 269 | 3 | 0 | 51 | 319 | 1 | 269 | 0.0 | 534 |
| Msa1164670 | MtrunA17_Chr1g0178681 | 71.004 | 269 | 78 | 0 | 51 | 319 | 1 | 269 | 3.35e-122 | 357 |
| Msa1164670 | MtrunA17_Chr4g0026391 | 64.684 | 269 | 95 | 0 | 51 | 319 | 2 | 270 | 1.00e-120 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164670 | AT1G67190.1 | 64.684 | 269 | 95 | 0 | 51 | 319 | 1 | 269 | 1.77e-122 | 358 |
| Msa1164670 | AT1G67190.2 | 64.684 | 269 | 95 | 0 | 51 | 319 | 1 | 269 | 1.77e-122 | 358 |
Find 61 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAATGATATTGAAATT+AGG | 0.193329 | 7_4:-56369135 | None:intergenic |
| TCTCAATGATATTGAAATTA+GGG | 0.201362 | 7_4:-56369134 | None:intergenic |
| TACAATAAAATCTTTCATTA+AGG | 0.228257 | 7_4:-56367184 | None:intergenic |
| GAATCTGACATAGCGATTTC+TGG | 0.230502 | 7_4:-56369342 | None:intergenic |
| AGAGCAAATTTCGCGATATA+GGG | 0.320402 | 7_4:-56368944 | None:intergenic |
| CATCCTTAACTTGCAAGAAA+TGG | 0.324453 | 7_4:+56368866 | Msa1164670:CDS |
| TAGAGCAAATTTCGCGATAT+AGG | 0.327459 | 7_4:-56368945 | None:intergenic |
| CTGTTACCCCTGTCATTGCT+TGG | 0.349306 | 7_4:+56369058 | Msa1164670:CDS |
| AATTCATAGGTACCATTAGA+TGG | 0.353568 | 7_4:-56367086 | None:intergenic |
| ATGTATTGAATGAAAGAGTT+TGG | 0.353897 | 7_4:-56368912 | None:intergenic |
| ATAGACAAGGTTTCAAGTTT+CGG | 0.358073 | 7_4:-56369312 | None:intergenic |
| TCTCCATTTCTTGCAAGTTA+AGG | 0.360964 | 7_4:-56368869 | None:intergenic |
| GCTTAGCAGCTCTTCTTTGA+AGG | 0.394764 | 7_4:+56369380 | Msa1164670:CDS |
| CCAATCTACATTGAATTCAT+AGG | 0.409184 | 7_4:-56367099 | None:intergenic |
| TAAATGAATCCTCCATCTAA+TGG | 0.419177 | 7_4:+56367074 | None:intergenic |
| CTTGGCTAGCAATCCTATCT+CGG | 0.423380 | 7_4:+56369188 | Msa1164670:CDS |
| TGTTAGGCGCTGCAATCCTT+TGG | 0.433874 | 7_4:-56369007 | None:intergenic |
| GTATCATATTATCCCATCTT+GGG | 0.437104 | 7_4:+56368821 | Msa1164670:CDS |
| CGAAATTTGCTCTAGTCACT+TGG | 0.446849 | 7_4:+56368954 | Msa1164670:CDS |
| ATGATACCGACCACTTCAAC+AGG | 0.448381 | 7_4:-56368805 | None:intergenic |
| TACATAAGCCAAGCAATGAC+AGG | 0.467063 | 7_4:-56369066 | None:intergenic |
| TATCCCATCTTGGGTCTGCT+AGG | 0.472254 | 7_4:+56368830 | Msa1164670:CDS |
| GGTATCATATTATCCCATCT+TGG | 0.475174 | 7_4:+56368820 | Msa1164670:CDS |
| ATCCCATCTTGGGTCTGCTA+GGG | 0.476732 | 7_4:+56368831 | Msa1164670:CDS |
| CATCATCCATGAAAATTGTT+AGG | 0.477751 | 7_4:-56369023 | None:intergenic |
| TTCGGCTCAACACCCGAGAT+AGG | 0.481385 | 7_4:-56369201 | None:intergenic |
| CATCCCTAGCAGACCCAAGA+TGG | 0.487907 | 7_4:-56368834 | None:intergenic |
| CCTATGAATTCAATGTAGAT+TGG | 0.496450 | 7_4:+56367099 | Msa1164670:CDS |
| TAGATTGGTCTCGTATTAAG+AGG | 0.502089 | 7_4:+56367114 | Msa1164670:CDS |
| CAAGGAAATTTATGATACTT+CGG | 0.514673 | 7_4:-56369219 | None:intergenic |
| GATCAATTCAAAAGCATCAA+AGG | 0.535278 | 7_4:-56369484 | None:intergenic |
| TTGGCTAGCAATCCTATCTC+GGG | 0.539654 | 7_4:+56369189 | Msa1164670:CDS |
| CTCAATGATATTGAAATTAG+GGG | 0.540853 | 7_4:-56369133 | None:intergenic |
| TATTATCTCCAATGTCAAGA+TGG | 0.549282 | 7_4:-56369554 | None:intergenic |
| GCAAGAAATGGAGAGAAGCT+TGG | 0.560253 | 7_4:+56368878 | Msa1164670:CDS |
| AGTGTCATCCATCTTGACAT+TGG | 0.562714 | 7_4:+56369546 | Msa1164670:CDS |
| TACACACATCTACGATCTCA+AGG | 0.565105 | 7_4:-56369584 | None:intergenic |
| TTTCATTCAATACATCTGAC+TGG | 0.565276 | 7_4:+56368920 | Msa1164670:CDS |
| AATCGCTATGTCAGATTCAG+AGG | 0.571141 | 7_4:+56369347 | Msa1164670:CDS |
| ATCCCTAGCAGACCCAAGAT+GGG | 0.587597 | 7_4:-56368833 | None:intergenic |
| AATAATAGCTCGACGCGTGG+AGG | 0.588508 | 7_4:+56367137 | Msa1164670:CDS |
| TGGTTGTGTTAGAACTTGGA+TGG | 0.588684 | 7_4:+56369829 | Msa1164670:intron |
| GAGCAAATTTCGCGATATAG+GGG | 0.592223 | 7_4:-56368943 | None:intergenic |
| GGAGGATCTTCCTGTTGAAG+TGG | 0.592625 | 7_4:+56368795 | Msa1164670:CDS |
| AACGACAGCGACTTCAAGCA+AGG | 0.592920 | 7_4:-56369237 | None:intergenic |
| ATATCATTGAGAAATGCAGC+AGG | 0.597773 | 7_4:+56369145 | Msa1164670:CDS |
| TTCTGGACAAACAATAGACA+AGG | 0.600718 | 7_4:-56369325 | None:intergenic |
| AGGAATAATAGCTCGACGCG+TGG | 0.607212 | 7_4:+56367134 | Msa1164670:CDS |
| TGCTTGGCTTATGTATACGA+GGG | 0.608384 | 7_4:+56369074 | Msa1164670:CDS |
| TATTGAATGAAAGAGTTTGG+AGG | 0.609653 | 7_4:-56368909 | None:intergenic |
| TGATAAACTCATATTAGTGG+CGG | 0.615767 | 7_4:+56369428 | Msa1164670:CDS |
| GGATTACTGAGGGACTCTTG+TGG | 0.623079 | 7_4:+56367158 | Msa1164670:CDS |
| ACATAAGCCAAGCAATGACA+GGG | 0.628082 | 7_4:-56369065 | None:intergenic |
| TTACTGAGGGACTCTTGTGG+TGG | 0.628893 | 7_4:+56367161 | Msa1164670:CDS |
| GATCTTCCTGTTGAAGTGGT+CGG | 0.634333 | 7_4:+56368799 | Msa1164670:CDS |
| TTGCTTGGCTTATGTATACG+AGG | 0.648455 | 7_4:+56369073 | Msa1164670:CDS |
| CGAGATAGGATTGCTAGCCA+AGG | 0.649589 | 7_4:-56369187 | None:intergenic |
| TCATAGGTACCATTAGATGG+AGG | 0.655418 | 7_4:-56367083 | None:intergenic |
| GACGCGTGGAGGATTACTGA+GGG | 0.673117 | 7_4:+56367148 | Msa1164670:CDS |
| CGACGCGTGGAGGATTACTG+AGG | 0.729954 | 7_4:+56367147 | Msa1164670:CDS |
| CATAAGCCAAGCAATGACAG+GGG | 0.741525 | 7_4:-56369064 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTGTTGTTATTTTTTT+TGG | + | chr7_4:56368309-56368328 | Msa1164670:intron | 10.0% |
| !! | TACAATAAAATCTTTCATTA+AGG | - | chr7_4:56367187-56367206 | None:intergenic | 15.0% |
| !! | TTTAAGAAATAATCTTATCA+AGG | - | chr7_4:56367225-56367244 | None:intergenic | 15.0% |
| !!! | TTAGAGGTATTTTTTTTTTT+TGG | + | chr7_4:56367841-56367860 | Msa1164670:intron | 15.0% |
| !! | TTGAATAATTAAAATGAAAG+TGG | - | chr7_4:56368149-56368168 | None:intergenic | 15.0% |
| !!! | ATAATAACCTATTCTAAAAG+AGG | - | chr7_4:56367310-56367329 | None:intergenic | 20.0% |
| !! | ATTTAGCTAACATAAAAGTT+GGG | - | chr7_4:56367385-56367404 | None:intergenic | 20.0% |
| !! | TATTTAGCTAACATAAAAGT+TGG | - | chr7_4:56367386-56367405 | None:intergenic | 20.0% |
| !!! | AACTTTTATGTTAGCTAAAT+AGG | + | chr7_4:56367385-56367404 | Msa1164670:intron | 20.0% |
| !!! | ACTTTTATGTTAGCTAAATA+GGG | + | chr7_4:56367386-56367405 | Msa1164670:intron | 20.0% |
| !! | AAAATTAGGTATATATTCAG+AGG | + | chr7_4:56367567-56367586 | Msa1164670:intron | 20.0% |
| !! | AAATTAGGTATATATTCAGA+GGG | + | chr7_4:56367568-56367587 | Msa1164670:intron | 20.0% |
| !! | TTAACGTATTAAAATGAGAA+GGG | - | chr7_4:56367616-56367635 | None:intergenic | 20.0% |
| !! | ATTAACGTATTAAAATGAGA+AGG | - | chr7_4:56367617-56367636 | None:intergenic | 20.0% |
| !!! | TCTTTGAAAAAATAAATGCA+TGG | - | chr7_4:56367642-56367661 | None:intergenic | 20.0% |
| !! | TATAGAGATAGTTTCTTATT+GGG | - | chr7_4:56367748-56367767 | None:intergenic | 20.0% |
| !! | ATATAGAGATAGTTTCTTAT+TGG | - | chr7_4:56367749-56367768 | None:intergenic | 20.0% |
| !! | TGTATATATGTTATAAACTG+TGG | + | chr7_4:56367790-56367809 | Msa1164670:intron | 20.0% |
| !! | CATATATCATATATCTTTAG+AGG | + | chr7_4:56367825-56367844 | Msa1164670:intron | 20.0% |
| !!! | TTGTTGTTATTTTTTTTGGT+AGG | + | chr7_4:56368313-56368332 | Msa1164670:intron | 20.0% |
| !! | TTCAATTAATCATAATGGTT+CGG | - | chr7_4:56368573-56368592 | None:intergenic | 20.0% |
| !! | ACACTTTCAATTAATCATAA+TGG | - | chr7_4:56368578-56368597 | None:intergenic | 20.0% |
| !!! | ACTGTTTTTGATTGAAATAT+AGG | + | chr7_4:56368748-56368767 | Msa1164670:intron | 20.0% |
| !!! | TGTTAAATTATTTTATGCGA+TGG | + | chr7_4:56368774-56368793 | Msa1164670:CDS | 20.0% |
| !! | TCTCAATGATATTGAAATTA+GGG | - | chr7_4:56369137-56369156 | None:intergenic | 20.0% |
| !! | TTCTCAATGATATTGAAATT+AGG | - | chr7_4:56369138-56369157 | None:intergenic | 20.0% |
| !!! | TTTTGATAAACTCATATTAG+TGG | + | chr7_4:56369425-56369444 | Msa1164670:CDS | 20.0% |
| ! | AAGAAATAATCTTATCAAGG+TGG | - | chr7_4:56367222-56367241 | None:intergenic | 25.0% |
| !!! | CATAAAACCTCTTTTAGAAT+AGG | + | chr7_4:56367300-56367319 | Msa1164670:intron | 25.0% |
| ! | AAAAAATTACGACAGAATGA+AGG | - | chr7_4:56367422-56367441 | None:intergenic | 25.0% |
| ! | TTAACTAATTAGATGGAGAA+TGG | - | chr7_4:56367480-56367499 | None:intergenic | 25.0% |
| ! | ACTTGCATTAACTAATTAGA+TGG | - | chr7_4:56367487-56367506 | None:intergenic | 25.0% |
| ! | AAAACCAAACTCGTAAAATT+AGG | + | chr7_4:56367553-56367572 | Msa1164670:intron | 25.0% |
| !! | TATACCTAATTTTACGAGTT+TGG | - | chr7_4:56367560-56367579 | None:intergenic | 25.0% |
| !!! | TTTTTGGTAACAATCTTTAG+AGG | + | chr7_4:56367857-56367876 | Msa1164670:intron | 25.0% |
| ! | AAGGAAAAATTGAAATCGAT+CGG | - | chr7_4:56368066-56368085 | None:intergenic | 25.0% |
| !!! | TTTACCAATTTTTTATGCAG+AGG | - | chr7_4:56368191-56368210 | None:intergenic | 25.0% |
| ! | CTTTATCAATGAAATGACAA+GGG | - | chr7_4:56368265-56368284 | None:intergenic | 25.0% |
| ! | ACTTTATCAATGAAATGACA+AGG | - | chr7_4:56368266-56368285 | None:intergenic | 25.0% |
| !!! | TAAATTATTTTATGCGATGG+AGG | + | chr7_4:56368777-56368796 | Msa1164670:CDS | 25.0% |
| ! | ATGTATTGAATGAAAGAGTT+TGG | - | chr7_4:56368915-56368934 | None:intergenic | 25.0% |
| ! | CTCAATGATATTGAAATTAG+GGG | - | chr7_4:56369136-56369155 | None:intergenic | 25.0% |
| ! | CAAGGAAATTTATGATACTT+CGG | - | chr7_4:56369222-56369241 | None:intergenic | 25.0% |
| !! | TGCTTTTGAATTGATCAATA+AGG | + | chr7_4:56369491-56369510 | Msa1164670:CDS | 25.0% |
| !! | GCTTTTGAATTGATCAATAA+GGG | + | chr7_4:56369492-56369511 | Msa1164670:CDS | 25.0% |
| !! | CTTTTGAATTGATCAATAAG+GGG | + | chr7_4:56369493-56369512 | Msa1164670:CDS | 25.0% |
| ! | TGTGTAACTTCATATTTATG+TGG | + | chr7_4:56369601-56369620 | Msa1164670:intron | 25.0% |
| !! | ATCTTTCAAGTCATAACTTA+AGG | - | chr7_4:56369763-56369782 | None:intergenic | 25.0% |
| ! | TTAAGTTATGACTTGAAAGA+TGG | + | chr7_4:56369762-56369781 | Msa1164670:intron | 25.0% |
| AATTCATAGGTACCATTAGA+TGG | - | chr7_4:56367089-56367108 | None:intergenic | 30.0% | |
| CCAATCTACATTGAATTCAT+AGG | - | chr7_4:56367102-56367121 | None:intergenic | 30.0% | |
| CCTATGAATTCAATGTAGAT+TGG | + | chr7_4:56367099-56367118 | Msa1164670:CDS | 30.0% | |
| AAATAATCTTATCAAGGTGG+AGG | - | chr7_4:56367219-56367238 | None:intergenic | 30.0% | |
| TTCTTAAACAAGTTCCACTT+TGG | + | chr7_4:56367237-56367256 | Msa1164670:intron | 30.0% | |
| !! | AAGAGGTTTTATGTGAGTAA+TGG | - | chr7_4:56367293-56367312 | None:intergenic | 30.0% |
| !! | GATATTCAGATCGATTTGAT+CGG | + | chr7_4:56367707-56367726 | Msa1164670:intron | 30.0% |
| ACGAAAGATAACAGTTAGAA+GGG | - | chr7_4:56368116-56368135 | None:intergenic | 30.0% | |
| AACGAAAGATAACAGTTAGA+AGG | - | chr7_4:56368117-56368136 | None:intergenic | 30.0% | |
| ACATCCTCTGCATAAAAAAT+TGG | + | chr7_4:56368184-56368203 | Msa1164670:intron | 30.0% | |
| ATGTGAGTGAATTAGTATCT+GGG | - | chr7_4:56368233-56368252 | None:intergenic | 30.0% | |
| !! | ACTGTTTCTGATTGATATCT+TGG | + | chr7_4:56368350-56368369 | Msa1164670:intron | 30.0% |
| TTTCTGATTGATATCTTGGT+CGG | + | chr7_4:56368354-56368373 | Msa1164670:intron | 30.0% | |
| AAAATAAATAAAGGGCAACC+CGG | - | chr7_4:56368648-56368667 | None:intergenic | 30.0% | |
| GTATCATATTATCCCATCTT+GGG | + | chr7_4:56368821-56368840 | Msa1164670:CDS | 30.0% | |
| TATTGAATGAAAGAGTTTGG+AGG | - | chr7_4:56368912-56368931 | None:intergenic | 30.0% | |
| TTTCATTCAATACATCTGAC+TGG | + | chr7_4:56368920-56368939 | Msa1164670:CDS | 30.0% | |
| !!! | TGTACACTTTTTCAAACCAA+AGG | + | chr7_4:56368991-56369010 | Msa1164670:CDS | 30.0% |
| CATCATCCATGAAAATTGTT+AGG | - | chr7_4:56369026-56369045 | None:intergenic | 30.0% | |
| !! | ATAGACAAGGTTTCAAGTTT+CGG | - | chr7_4:56369315-56369334 | None:intergenic | 30.0% |
| TGATAAACTCATATTAGTGG+CGG | + | chr7_4:56369428-56369447 | Msa1164670:CDS | 30.0% | |
| !! | GATCAATTCAAAAGCATCAA+AGG | - | chr7_4:56369487-56369506 | None:intergenic | 30.0% |
| TATTATCTCCAATGTCAAGA+TGG | - | chr7_4:56369557-56369576 | None:intergenic | 30.0% | |
| CGTCAAAGTTAAAAAAGCTT+CGG | + | chr7_4:56369652-56369671 | Msa1164670:intron | 30.0% | |
| TCTAGGAAAACAAACAGATA+TGG | - | chr7_4:56369727-56369746 | None:intergenic | 30.0% | |
| TCAAGTCATAACTTAAGGAA+AGG | - | chr7_4:56369758-56369777 | None:intergenic | 30.0% | |
| !! | TAGATTGGTCTCGTATTAAG+AGG | + | chr7_4:56367114-56367133 | Msa1164670:CDS | 35.0% |
| TATTATTCTCCTCAGTCTCT+TGG | + | chr7_4:56367324-56367343 | Msa1164670:intron | 35.0% | |
| ! | TTTTAACGTCCTCCTTTTGT+TGG | + | chr7_4:56367439-56367458 | Msa1164670:intron | 35.0% |
| AACTCCAACAATCCAACAAA+AGG | - | chr7_4:56367454-56367473 | None:intergenic | 35.0% | |
| !!! | CGAGTTTGGTTTTTGTAAGT+GGG | - | chr7_4:56367546-56367565 | None:intergenic | 35.0% |
| !!! | ACGAGTTTGGTTTTTGTAAG+TGG | - | chr7_4:56367547-56367566 | None:intergenic | 35.0% |
| TATCCTCTACAATGACTGTA+TGG | - | chr7_4:56367681-56367700 | None:intergenic | 35.0% | |
| GGTGGAAAGTTAAAATGAGT+GGG | - | chr7_4:56367972-56367991 | None:intergenic | 35.0% | |
| TACTTGGATGATTAAAGGGT+CGG | - | chr7_4:56368090-56368109 | None:intergenic | 35.0% | |
| GGCTTACTTGGATGATTAAA+GGG | - | chr7_4:56368094-56368113 | None:intergenic | 35.0% | |
| CGAAAGATAACAGTTAGAAG+GGG | - | chr7_4:56368115-56368134 | None:intergenic | 35.0% | |
| CATGTGAGTGAATTAGTATC+TGG | - | chr7_4:56368234-56368253 | None:intergenic | 35.0% | |
| GATATCAATCAGAAACAGTC+TGG | - | chr7_4:56368349-56368368 | None:intergenic | 35.0% | |
| GATTTGTGATTGAATGATGC+TGG | - | chr7_4:56368482-56368501 | None:intergenic | 35.0% | |
| GGTATCATATTATCCCATCT+TGG | + | chr7_4:56368820-56368839 | Msa1164670:CDS | 35.0% | |
| !! | CATCCTTAACTTGCAAGAAA+TGG | + | chr7_4:56368866-56368885 | Msa1164670:CDS | 35.0% |
| TCTCCATTTCTTGCAAGTTA+AGG | - | chr7_4:56368872-56368891 | None:intergenic | 35.0% | |
| AGAGCAAATTTCGCGATATA+GGG | - | chr7_4:56368947-56368966 | None:intergenic | 35.0% | |
| TAGAGCAAATTTCGCGATAT+AGG | - | chr7_4:56368948-56368967 | None:intergenic | 35.0% | |
| ATATCATTGAGAAATGCAGC+AGG | + | chr7_4:56369145-56369164 | Msa1164670:CDS | 35.0% | |
| TTCTGGACAAACAATAGACA+AGG | - | chr7_4:56369328-56369347 | None:intergenic | 35.0% | |
| ! | AAAGATGGAGTGCTTCATTA+TGG | + | chr7_4:56369777-56369796 | Msa1164670:intron | 35.0% |
| ! | GTTGTCTTTTCTGATGAATG+TGG | + | chr7_4:56369809-56369828 | Msa1164670:intron | 35.0% |
| AATGTGGTTGTGTTAGAACT+TGG | + | chr7_4:56369825-56369844 | Msa1164670:intron | 35.0% | |
| ! | TCAGTGATCTTTTCTCAGTT+TGG | + | chr7_4:56369859-56369878 | Msa1164670:CDS | 35.0% |
| ! | CAGTGATCTTTTCTCAGTTT+GGG | + | chr7_4:56369860-56369879 | Msa1164670:CDS | 35.0% |
| TCATAGGTACCATTAGATGG+AGG | - | chr7_4:56367086-56367105 | None:intergenic | 40.0% | |
| TTCCACTTTGGTTGCAAATG+CGG | + | chr7_4:56367249-56367268 | Msa1164670:intron | 40.0% | |
| TAAACCAATCCAAGAGACTG+AGG | - | chr7_4:56367336-56367355 | None:intergenic | 40.0% | |
| ! | TCCTCCTTTTGTTGGATTGT+TGG | + | chr7_4:56367447-56367466 | Msa1164670:intron | 40.0% |
| TCCAACAATCCAACAAAAGG+AGG | - | chr7_4:56367451-56367470 | None:intergenic | 40.0% | |
| !! | GTTTTTGTAAGTGGGTATCG+TGG | - | chr7_4:56367538-56367557 | None:intergenic | 40.0% |
| GAACCATACAGTCATTGTAG+AGG | + | chr7_4:56367675-56367694 | Msa1164670:intron | 40.0% | |
| GGGTGGAAAGTTAAAATGAG+TGG | - | chr7_4:56367973-56367992 | None:intergenic | 40.0% | |
| ATTGAAATCGATCGGAGAGA+GGG | - | chr7_4:56368058-56368077 | None:intergenic | 40.0% | |
| AATTGAAATCGATCGGAGAG+AGG | - | chr7_4:56368059-56368078 | None:intergenic | 40.0% | |
| GGGCTTACTTGGATGATTAA+AGG | - | chr7_4:56368095-56368114 | None:intergenic | 40.0% | |
| TGATATCTTGGTCGGTGTAA+TGG | + | chr7_4:56368362-56368381 | Msa1164670:intron | 40.0% | |
| ATGATACCGATCACTTCAAC+AGG | - | chr7_4:56368401-56368420 | None:intergenic | 40.0% | |
| GAAAAGTCTTGACACTATCC+CGG | + | chr7_4:56368598-56368617 | Msa1164670:intron | 40.0% | |
| GAGCAAATTTCGCGATATAG+GGG | - | chr7_4:56368946-56368965 | None:intergenic | 40.0% | |
| ! | CGAAATTTGCTCTAGTCACT+TGG | + | chr7_4:56368954-56368973 | Msa1164670:CDS | 40.0% |
| ACATAAGCCAAGCAATGACA+GGG | - | chr7_4:56369068-56369087 | None:intergenic | 40.0% | |
| TACATAAGCCAAGCAATGAC+AGG | - | chr7_4:56369069-56369088 | None:intergenic | 40.0% | |
| TTGCTTGGCTTATGTATACG+AGG | + | chr7_4:56369073-56369092 | Msa1164670:CDS | 40.0% | |
| TGCTTGGCTTATGTATACGA+GGG | + | chr7_4:56369074-56369093 | Msa1164670:CDS | 40.0% | |
| GAAATGCAGCAGGAAAAAGT+TGG | + | chr7_4:56369155-56369174 | Msa1164670:CDS | 40.0% | |
| !! | AAAGTTGGAGGTTTTGACCT+TGG | + | chr7_4:56369170-56369189 | Msa1164670:CDS | 40.0% |
| ! | TTTTGTTAGCATCTCAGCGT+TGG | + | chr7_4:56369263-56369282 | Msa1164670:CDS | 40.0% |
| GAATCTGACATAGCGATTTC+TGG | - | chr7_4:56369345-56369364 | None:intergenic | 40.0% | |
| AATCGCTATGTCAGATTCAG+AGG | + | chr7_4:56369347-56369366 | Msa1164670:CDS | 40.0% | |
| AGTGTCATCCATCTTGACAT+TGG | + | chr7_4:56369546-56369565 | Msa1164670:CDS | 40.0% | |
| TACACACATCTACGATCTCA+AGG | - | chr7_4:56369587-56369606 | None:intergenic | 40.0% | |
| AGTTAAAAAAGCTTCGGCTG+TGG | + | chr7_4:56369658-56369677 | Msa1164670:intron | 40.0% | |
| ! | AAGGAAAGGTGCGTTAATCT+AGG | - | chr7_4:56369744-56369763 | None:intergenic | 40.0% |
| ! | TGCTTCATTATGGCTTGCAA+GGG | + | chr7_4:56369787-56369806 | Msa1164670:intron | 40.0% |
| TGGTTGTGTTAGAACTTGGA+TGG | + | chr7_4:56369829-56369848 | Msa1164670:intron | 40.0% | |
| TCCACTTTGGTTGCAAATGC+GGG | + | chr7_4:56367250-56367269 | Msa1164670:intron | 45.0% | |
| TTCTCCTCAGTCTCTTGGAT+TGG | + | chr7_4:56367329-56367348 | Msa1164670:intron | 45.0% | |
| GACGAAGGGAAAATTTGGCT+GGG | - | chr7_4:56367993-56368012 | None:intergenic | 45.0% | |
| AGACGAAGGGAAAATTTGGC+TGG | - | chr7_4:56367994-56368013 | None:intergenic | 45.0% | |
| CCTCAGACGAAGGGAAAATT+TGG | - | chr7_4:56367998-56368017 | None:intergenic | 45.0% | |
| ! | CCAAATTTTCCCTTCGTCTG+AGG | + | chr7_4:56367995-56368014 | Msa1164670:intron | 45.0% |
| AGAGCTGGAAGAAGAAGAAG+CGG | - | chr7_4:56368027-56368046 | None:intergenic | 45.0% | |
| ACAGTTAGAAGGGGCTTACT+TGG | - | chr7_4:56368106-56368125 | None:intergenic | 45.0% | |
| !! | TCTTGGTCGGTGTAATGGAT+TGG | + | chr7_4:56368367-56368386 | Msa1164670:intron | 45.0% |
| ACCCTTCCTGTTGAAGTGAT+CGG | + | chr7_4:56368392-56368411 | Msa1164670:intron | 45.0% | |
| ACCGATCACTTCAACAGGAA+GGG | - | chr7_4:56368396-56368415 | None:intergenic | 45.0% | |
| TACCGATCACTTCAACAGGA+AGG | - | chr7_4:56368397-56368416 | None:intergenic | 45.0% | |
| GATCTTCCTGTTGAAGTGGT+CGG | + | chr7_4:56368799-56368818 | Msa1164670:CDS | 45.0% | |
| ATGATACCGACCACTTCAAC+AGG | - | chr7_4:56368808-56368827 | None:intergenic | 45.0% | |
| GCAAGAAATGGAGAGAAGCT+TGG | + | chr7_4:56368878-56368897 | Msa1164670:CDS | 45.0% | |
| ! | GCAGCGCCTAACAATTTTCA+TGG | + | chr7_4:56369017-56369036 | Msa1164670:CDS | 45.0% |
| CATAAGCCAAGCAATGACAG+GGG | - | chr7_4:56369067-56369086 | None:intergenic | 45.0% | |
| ATGCAGCAGGAAAAAGTTGG+AGG | + | chr7_4:56369158-56369177 | Msa1164670:CDS | 45.0% | |
| CTTGGCTAGCAATCCTATCT+CGG | + | chr7_4:56369188-56369207 | Msa1164670:CDS | 45.0% | |
| TTGGCTAGCAATCCTATCTC+GGG | + | chr7_4:56369189-56369208 | Msa1164670:CDS | 45.0% | |
| GCTTAGCAGCTCTTCTTTGA+AGG | + | chr7_4:56369380-56369399 | Msa1164670:CDS | 45.0% | |
| !!! | GAGTGTTGTTTTTGACGACG+AGG | + | chr7_4:56369680-56369699 | Msa1164670:intron | 45.0% |
| !! | TGTTTTTGACGACGAGGATG+AGG | + | chr7_4:56369686-56369705 | Msa1164670:intron | 45.0% |
| ! | GTGCTTCATTATGGCTTGCA+AGG | + | chr7_4:56369786-56369805 | Msa1164670:intron | 45.0% |
| !! | AGAATAAAAAAATAAATAAA+GGG | - | chr7_4:56368656-56368675 | None:intergenic | 5.0% |
| !! | AAGAATAAAAAAATAAATAA+AGG | - | chr7_4:56368657-56368676 | None:intergenic | 5.0% |
| AGGAATAATAGCTCGACGCG+TGG | + | chr7_4:56367134-56367153 | Msa1164670:CDS | 50.0% | |
| AATAATAGCTCGACGCGTGG+AGG | + | chr7_4:56367137-56367156 | Msa1164670:CDS | 50.0% | |
| GGATTACTGAGGGACTCTTG+TGG | + | chr7_4:56367158-56367177 | Msa1164670:CDS | 50.0% | |
| TTACTGAGGGACTCTTGTGG+TGG | + | chr7_4:56367161-56367180 | Msa1164670:CDS | 50.0% | |
| ACCCGCATTTGCAACCAAAG+TGG | - | chr7_4:56367254-56367273 | None:intergenic | 50.0% | |
| CGTGTTCTATGTCACGTGCT+AGG | - | chr7_4:56367940-56367959 | None:intergenic | 50.0% | |
| GAAGGGAAAATTTGGCTGGG+TGG | - | chr7_4:56367990-56368009 | None:intergenic | 50.0% | |
| GGATGATTAAAGGGTCGGCA+AGG | - | chr7_4:56368085-56368104 | None:intergenic | 50.0% | |
| GGAGGATCTTCCTGTTGAAG+TGG | + | chr7_4:56368795-56368814 | Msa1164670:CDS | 50.0% | |
| TATCCCATCTTGGGTCTGCT+AGG | + | chr7_4:56368830-56368849 | Msa1164670:CDS | 50.0% | |
| ATCCCATCTTGGGTCTGCTA+GGG | + | chr7_4:56368831-56368850 | Msa1164670:CDS | 50.0% | |
| ATCCCTAGCAGACCCAAGAT+GGG | - | chr7_4:56368836-56368855 | None:intergenic | 50.0% | |
| ! | TGTTAGGCGCTGCAATCCTT+TGG | - | chr7_4:56369010-56369029 | None:intergenic | 50.0% |
| CTGTTACCCCTGTCATTGCT+TGG | + | chr7_4:56369058-56369077 | Msa1164670:CDS | 50.0% | |
| CGAGATAGGATTGCTAGCCA+AGG | - | chr7_4:56369190-56369209 | None:intergenic | 50.0% | |
| AACGACAGCGACTTCAAGCA+AGG | - | chr7_4:56369240-56369259 | None:intergenic | 50.0% | |
| GACGCGTGGAGGATTACTGA+GGG | + | chr7_4:56367148-56367167 | Msa1164670:CDS | 55.0% | |
| CATCCCTAGCAGACCCAAGA+TGG | - | chr7_4:56368837-56368856 | None:intergenic | 55.0% | |
| TTCGGCTCAACACCCGAGAT+AGG | - | chr7_4:56369204-56369223 | None:intergenic | 55.0% | |
| CGACGCGTGGAGGATTACTG+AGG | + | chr7_4:56367147-56367166 | Msa1164670:CDS | 60.0% | |
| CGGCTCTCTCCTCAGACGAA+GGG | - | chr7_4:56368007-56368026 | None:intergenic | 60.0% | |
| GAGAGGGAGAGAGAGAGAGC+TGG | - | chr7_4:56368042-56368061 | None:intergenic | 60.0% | |
| TATCCCGGACCCTGCGTAAG+CGG | + | chr7_4:56368613-56368632 | Msa1164670:intron | 60.0% | |
| TGCACACTCCCGCTTACGCA+GGG | - | chr7_4:56368625-56368644 | None:intergenic | 60.0% | |
| GCGGCTCTCTCCTCAGACGA+AGG | - | chr7_4:56368008-56368027 | None:intergenic | 65.0% | |
| ATCCCGGACCCTGCGTAAGC+GGG | + | chr7_4:56368614-56368633 | Msa1164670:intron | 65.0% | |
| ACTCCCGCTTACGCAGGGTC+CGG | - | chr7_4:56368620-56368639 | None:intergenic | 65.0% | |
| GTGCACACTCCCGCTTACGC+AGG | - | chr7_4:56368626-56368645 | None:intergenic | 65.0% | |
| ! | GCGTAAGCGGGAGTGTGCAC+CGG | + | chr7_4:56368626-56368645 | Msa1164670:intron | 65.0% |
| ! | CGTAAGCGGGAGTGTGCACC+GGG | + | chr7_4:56368627-56368646 | Msa1164670:intron | 65.0% |
| CTCCCGCTTACGCAGGGTCC+GGG | - | chr7_4:56368619-56368638 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56367077 | 56369885 | 56367077 | ID=Msa1164670;Name=Msa1164670 |
| chr7_4 | mRNA | 56367077 | 56369885 | 56367077 | ID=Msa1164670-mRNA-1;Parent=Msa1164670;Name=Msa1164670-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|0.66|1|1|3|0|333 |
| chr7_4 | exon | 56367077 | 56367203 | 56367077 | ID=Msa1164670-mRNA-1:exon:16790;Parent=Msa1164670-mRNA-1 |
| chr7_4 | exon | 56368770 | 56369599 | 56368770 | ID=Msa1164670-mRNA-1:exon:16791;Parent=Msa1164670-mRNA-1 |
| chr7_4 | exon | 56369841 | 56369885 | 56369841 | ID=Msa1164670-mRNA-1:exon:16792;Parent=Msa1164670-mRNA-1 |
| chr7_4 | CDS | 56367077 | 56367203 | 56367077 | ID=Msa1164670-mRNA-1:cds;Parent=Msa1164670-mRNA-1 |
| chr7_4 | CDS | 56368770 | 56369599 | 56368770 | ID=Msa1164670-mRNA-1:cds;Parent=Msa1164670-mRNA-1 |
| chr7_4 | CDS | 56369841 | 56369885 | 56369841 | ID=Msa1164670-mRNA-1:cds;Parent=Msa1164670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
