Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336130 | XP_003625811.1 | 99.284 | 419 | 3 | 0 | 1 | 419 | 1 | 419 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336130 | sp|Q9ZW88|FBL34_ARATH | 63.007 | 419 | 155 | 0 | 1 | 419 | 1 | 419 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336130 | G7L632 | 99.284 | 419 | 3 | 0 | 1 | 419 | 1 | 419 | 0.0 | 845 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028450 | Msa1336130 | -0.800212 | 1.602011e-48 | -8.615850e-47 |
| Msa0087250 | Msa1336130 | 0.803161 | 3.978687e-49 | -8.615850e-47 |
| Msa0621870 | Msa1336130 | -0.812138 | 4.929166e-51 | -8.615850e-47 |
| Msa0622800 | Msa1336130 | -0.801194 | 1.010281e-48 | -8.615850e-47 |
| Msa0660160 | Msa1336130 | -0.801732 | 7.838239e-49 | -8.615850e-47 |
| Msa0663580 | Msa1336130 | -0.805981 | 1.026818e-49 | -8.615850e-47 |
| Msa0667710 | Msa1336130 | -0.810788 | 9.683975e-51 | -8.615850e-47 |
| Msa0121080 | Msa1336130 | -0.808022 | 3.798412e-50 | -8.615850e-47 |
| Msa0143170 | Msa1336130 | 0.856052 | 4.175754e-62 | -8.615850e-47 |
| Msa0186380 | Msa1336130 | -0.804908 | 1.723733e-49 | -8.615850e-47 |
| Msa0190400 | Msa1336130 | -0.802874 | 4.561047e-49 | -8.615850e-47 |
| Msa0225030 | Msa1336130 | -0.800924 | 1.146971e-48 | -8.615850e-47 |
| Msa1235990 | Msa1336130 | -0.800277 | 1.554515e-48 | -8.615850e-47 |
| Msa1258600 | Msa1336130 | 0.831604 | 1.519022e-55 | -8.615850e-47 |
| Msa1265990 | Msa1336130 | -0.814508 | 1.486329e-51 | -8.615850e-47 |
| Msa1298440 | Msa1336130 | 0.828623 | 8.110343e-55 | -8.615850e-47 |
| Msa1336130 | Msa1356500 | -0.804941 | 1.696309e-49 | -8.615850e-47 |
| Msa1336130 | Msa1375640 | 0.803209 | 3.888982e-49 | -8.615850e-47 |
| Msa1336130 | Msa1376520 | 0.813406 | 2.600813e-51 | -8.615850e-47 |
| Msa1336130 | Msa1386150 | 0.983216 | 3.838714e-157 | -8.615850e-47 |
| Msa1336130 | Msa1400940 | 0.832366 | 9.847614e-56 | -8.615850e-47 |
| Msa1336130 | Msa1420630 | -0.813049 | 3.116247e-51 | -8.615850e-47 |
| Msa1336130 | Msa1425570 | -0.812633 | 3.842920e-51 | -8.615850e-47 |
| Msa1336130 | Msa1429190 | 0.810133 | 1.341125e-50 | -8.615850e-47 |
| Msa1336130 | Msa1449510 | -0.802614 | 5.161044e-49 | -8.615850e-47 |
| Msa0365350 | Msa1336130 | -0.808862 | 2.514652e-50 | -8.615850e-47 |
| Msa0369660 | Msa1336130 | 0.833039 | 6.705009e-56 | -8.615850e-47 |
| Msa0385870 | Msa1336130 | -0.812420 | 4.277515e-51 | -8.615850e-47 |
| Msa0417060 | Msa1336130 | 0.816626 | 5.020074e-52 | -8.615850e-47 |
| Msa0427850 | Msa1336130 | 0.829771 | 4.272928e-55 | -8.615850e-47 |
| Msa0463890 | Msa1336130 | 0.837689 | 4.482561e-57 | -8.615850e-47 |
| Msa0474080 | Msa1336130 | 0.824548 | 7.606217e-54 | -8.615850e-47 |
| Msa0482360 | Msa1336130 | 0.839659 | 1.388608e-57 | -8.615850e-47 |
| Msa1014530 | Msa1336130 | -0.803210 | 3.887125e-49 | -8.615850e-47 |
| Msa0249670 | Msa1336130 | -0.807350 | 5.276015e-50 | -8.615850e-47 |
| Msa0311130 | Msa1336130 | -0.809715 | 1.649742e-50 | -8.615850e-47 |
| Msa0314980 | Msa1336130 | -0.803668 | 3.123368e-49 | -8.615850e-47 |
| Msa1118890 | Msa1336130 | -0.801002 | 1.105953e-48 | -8.615850e-47 |
| Msa1158540 | Msa1336130 | -0.800216 | 1.599136e-48 | -8.615850e-47 |
| Msa1164670 | Msa1336130 | 0.955174 | 5.564686e-113 | -8.615850e-47 |
| Msa1187160 | Msa1336130 | 0.800666 | 1.295093e-48 | -8.615850e-47 |
| Msa1223600 | Msa1336130 | -0.808576 | 2.893945e-50 | -8.615850e-47 |
| Msa0532910 | Msa1336130 | -0.813524 | 2.451088e-51 | -8.615850e-47 |
| Msa0846180 | Msa1336130 | -0.805261 | 1.453838e-49 | -8.615850e-47 |
| Msa0970160 | Msa1336130 | -0.803620 | 3.195630e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336130 | MtrunA17_Chr7g0266221 | 99.284 | 419 | 3 | 0 | 1 | 419 | 1 | 419 | 0.0 | 845 |
| Msa1336130 | MtrunA17_Chr1g0178681 | 71.360 | 419 | 120 | 0 | 1 | 419 | 1 | 419 | 0.0 | 589 |
| Msa1336130 | MtrunA17_Chr4g0026391 | 63.723 | 419 | 152 | 0 | 1 | 419 | 2 | 420 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336130 | AT1G67190.1 | 63.007 | 419 | 155 | 0 | 1 | 419 | 1 | 419 | 0.0 | 528 |
| Msa1336130 | AT1G67190.2 | 63.007 | 419 | 155 | 0 | 1 | 419 | 1 | 419 | 0.0 | 528 |
Find 60 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAATGATATTGAAATT+AGG | 0.193329 | tig0000801:-9369 | None:intergenic |
| AATCATGAATTCAGTGAATT+TGG | 0.195737 | tig0000801:-10213 | None:intergenic |
| TCTCAATGATATTGAAATTA+GGG | 0.201362 | tig0000801:-9368 | None:intergenic |
| GAATCTGACATAGCGATTTC+TGG | 0.230502 | tig0000801:-9576 | None:intergenic |
| AGAGCAAATTTCGCGATATA+GGG | 0.320402 | tig0000801:-9178 | None:intergenic |
| CATCCTTAACTTGCAAGAAA+TGG | 0.324453 | tig0000801:+9100 | Msa1336130:CDS |
| AAAGATGGAGTGCTTCATTA+TGG | 0.324477 | tig0000801:+10011 | Msa1336130:CDS |
| TAGAGCAAATTTCGCGATAT+AGG | 0.327459 | tig0000801:-9179 | None:intergenic |
| AGTTTGGGTAGCTGGACTTT+TGG | 0.334910 | tig0000801:+10109 | Msa1336130:CDS |
| CTGTTACCCCTGTCATTGCT+TGG | 0.349306 | tig0000801:+9292 | Msa1336130:CDS |
| ATGTATTGAATGAAAGAGTT+TGG | 0.353897 | tig0000801:-9146 | None:intergenic |
| ATAGACAAGGTTTCAAGTTT+CGG | 0.358073 | tig0000801:-9546 | None:intergenic |
| TCTCCATTTCTTGCAAGTTA+AGG | 0.360964 | tig0000801:-9103 | None:intergenic |
| ATCTTTCAAGTCATAACTTA+AGG | 0.368328 | tig0000801:-9994 | None:intergenic |
| GCTTAGCAGCTCTTCTTTGA+AGG | 0.394764 | tig0000801:+9614 | Msa1336130:CDS |
| TTAAGTTATGACTTGAAAGA+TGG | 0.408134 | tig0000801:+9996 | Msa1336130:CDS |
| CTTGGCTAGCAATCCTATCT+CGG | 0.423380 | tig0000801:+9422 | Msa1336130:CDS |
| TGTTAGGCGCTGCAATCCTT+TGG | 0.433874 | tig0000801:-9241 | None:intergenic |
| GTATCATATTATCCCATCTT+GGG | 0.437104 | tig0000801:+9055 | Msa1336130:CDS |
| GTGCTTCATTATGGCTTGCA+AGG | 0.446222 | tig0000801:+10020 | Msa1336130:CDS |
| CGAAATTTGCTCTAGTCACT+TGG | 0.446849 | tig0000801:+9188 | Msa1336130:CDS |
| ATGATACCGACCACTTCAAC+AGG | 0.448381 | tig0000801:-9039 | None:intergenic |
| AAGGAAAGGTGCGTTAATCT+AGG | 0.450642 | tig0000801:-9975 | None:intergenic |
| TACATAAGCCAAGCAATGAC+AGG | 0.467063 | tig0000801:-9300 | None:intergenic |
| TATCCCATCTTGGGTCTGCT+AGG | 0.472254 | tig0000801:+9064 | Msa1336130:CDS |
| GGTATCATATTATCCCATCT+TGG | 0.475174 | tig0000801:+9054 | Msa1336130:CDS |
| ATCCCATCTTGGGTCTGCTA+GGG | 0.476732 | tig0000801:+9065 | Msa1336130:CDS |
| CATCATCCATGAAAATTGTT+AGG | 0.477751 | tig0000801:-9257 | None:intergenic |
| TCTAGGAAAACAAACAGATA+TGG | 0.480581 | tig0000801:-9958 | None:intergenic |
| TTCGGCTCAACACCCGAGAT+AGG | 0.481385 | tig0000801:-9435 | None:intergenic |
| CATCCCTAGCAGACCCAAGA+TGG | 0.487907 | tig0000801:-9068 | None:intergenic |
| TGCTTCATTATGGCTTGCAA+GGG | 0.506316 | tig0000801:+10021 | Msa1336130:CDS |
| CAAGGAAATTTATGATACTT+CGG | 0.514673 | tig0000801:-9453 | None:intergenic |
| GTTCGAGTTTGAATATGAGT+AGG | 0.522810 | tig0000801:+10265 | Msa1336130:CDS |
| GATCAATTCAAAAGCATCAA+AGG | 0.535278 | tig0000801:-9718 | None:intergenic |
| TTGGCTAGCAATCCTATCTC+GGG | 0.539654 | tig0000801:+9423 | Msa1336130:CDS |
| CTCAATGATATTGAAATTAG+GGG | 0.540853 | tig0000801:-9367 | None:intergenic |
| TGTGTAACTTCATATTTATG+TGG | 0.543217 | tig0000801:+9835 | Msa1336130:CDS |
| TCAAGTCATAACTTAAGGAA+AGG | 0.545749 | tig0000801:-9989 | None:intergenic |
| TATTATCTCCAATGTCAAGA+TGG | 0.549282 | tig0000801:-9788 | None:intergenic |
| GCAAGAAATGGAGAGAAGCT+TGG | 0.560253 | tig0000801:+9112 | Msa1336130:CDS |
| AGTGTCATCCATCTTGACAT+TGG | 0.562714 | tig0000801:+9780 | Msa1336130:CDS |
| TACACACATCTACGATCTCA+AGG | 0.565105 | tig0000801:-9818 | None:intergenic |
| TTTCATTCAATACATCTGAC+TGG | 0.565276 | tig0000801:+9154 | Msa1336130:CDS |
| AATCGCTATGTCAGATTCAG+AGG | 0.571141 | tig0000801:+9581 | Msa1336130:CDS |
| ACTGAATTCATGATTCAACT+AGG | 0.580130 | tig0000801:+10221 | Msa1336130:CDS |
| ATCCCTAGCAGACCCAAGAT+GGG | 0.587597 | tig0000801:-9067 | None:intergenic |
| GAGCAAATTTCGCGATATAG+GGG | 0.592223 | tig0000801:-9177 | None:intergenic |
| GGAGGATCTTCCTGTTGAAG+TGG | 0.592625 | tig0000801:+9029 | Msa1336130:CDS |
| AACGACAGCGACTTCAAGCA+AGG | 0.592920 | tig0000801:-9471 | None:intergenic |
| ATATCATTGAGAAATGCAGC+AGG | 0.597773 | tig0000801:+9379 | Msa1336130:CDS |
| TTCTGGACAAACAATAGACA+AGG | 0.600718 | tig0000801:-9559 | None:intergenic |
| TGCTTGGCTTATGTATACGA+GGG | 0.608384 | tig0000801:+9308 | Msa1336130:CDS |
| TATTGAATGAAAGAGTTTGG+AGG | 0.609653 | tig0000801:-9143 | None:intergenic |
| TGATAAACTCATATTAGTGG+CGG | 0.615767 | tig0000801:+9662 | Msa1336130:CDS |
| ACATAAGCCAAGCAATGACA+GGG | 0.628082 | tig0000801:-9299 | None:intergenic |
| GATCTTCCTGTTGAAGTGGT+CGG | 0.634333 | tig0000801:+9033 | Msa1336130:CDS |
| TTGCTTGGCTTATGTATACG+AGG | 0.648455 | tig0000801:+9307 | Msa1336130:CDS |
| CGAGATAGGATTGCTAGCCA+AGG | 0.649589 | tig0000801:-9421 | None:intergenic |
| CATAAGCCAAGCAATGACAG+GGG | 0.741525 | tig0000801:-9298 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTCAATGATATTGAAATTA+GGG | - | tig0000801:9371-9390 | None:intergenic | 20.0% |
| !! | TTCTCAATGATATTGAAATT+AGG | - | tig0000801:9372-9391 | None:intergenic | 20.0% |
| !!! | TTTTGATAAACTCATATTAG+TGG | + | tig0000801:9659-9678 | Msa1336130:CDS | 20.0% |
| !! | TCTCAATGATATTGAAATTA+GGG | - | tig0000801:9371-9390 | None:intergenic | 20.0% |
| !! | TTCTCAATGATATTGAAATT+AGG | - | tig0000801:9372-9391 | None:intergenic | 20.0% |
| !!! | TTTTGATAAACTCATATTAG+TGG | + | tig0000801:9659-9678 | Msa1336130:CDS | 20.0% |
| ! | ATGTATTGAATGAAAGAGTT+TGG | - | tig0000801:9149-9168 | None:intergenic | 25.0% |
| ! | CTCAATGATATTGAAATTAG+GGG | - | tig0000801:9370-9389 | None:intergenic | 25.0% |
| ! | CAAGGAAATTTATGATACTT+CGG | - | tig0000801:9456-9475 | None:intergenic | 25.0% |
| !! | TGCTTTTGAATTGATCAATA+AGG | + | tig0000801:9725-9744 | Msa1336130:CDS | 25.0% |
| !! | GCTTTTGAATTGATCAATAA+GGG | + | tig0000801:9726-9745 | Msa1336130:CDS | 25.0% |
| !! | CTTTTGAATTGATCAATAAG+GGG | + | tig0000801:9727-9746 | Msa1336130:CDS | 25.0% |
| ! | TGTGTAACTTCATATTTATG+TGG | + | tig0000801:9835-9854 | Msa1336130:CDS | 25.0% |
| !! | ATCTTTCAAGTCATAACTTA+AGG | - | tig0000801:9997-10016 | None:intergenic | 25.0% |
| ! | TTAAGTTATGACTTGAAAGA+TGG | + | tig0000801:9996-10015 | Msa1336130:CDS | 25.0% |
| ! | ATGTCCTAATCTTAAAAAGA+TGG | + | tig0000801:10136-10155 | Msa1336130:CDS | 25.0% |
| !!! | ATGACCATCTTTTTAAGATT+AGG | - | tig0000801:10143-10162 | None:intergenic | 25.0% |
| ! | CTTAAAAAGATGGTCATTTA+TGG | + | tig0000801:10146-10165 | Msa1336130:CDS | 25.0% |
| ! | AATCATGAATTCAGTGAATT+TGG | - | tig0000801:10216-10235 | None:intergenic | 25.0% |
| ! | ATGTATTGAATGAAAGAGTT+TGG | - | tig0000801:9149-9168 | None:intergenic | 25.0% |
| ! | CTCAATGATATTGAAATTAG+GGG | - | tig0000801:9370-9389 | None:intergenic | 25.0% |
| ! | CAAGGAAATTTATGATACTT+CGG | - | tig0000801:9456-9475 | None:intergenic | 25.0% |
| !! | TGCTTTTGAATTGATCAATA+AGG | + | tig0000801:9725-9744 | Msa1336130:CDS | 25.0% |
| !! | GCTTTTGAATTGATCAATAA+GGG | + | tig0000801:9726-9745 | Msa1336130:CDS | 25.0% |
| !! | CTTTTGAATTGATCAATAAG+GGG | + | tig0000801:9727-9746 | Msa1336130:CDS | 25.0% |
| ! | TGTGTAACTTCATATTTATG+TGG | + | tig0000801:9835-9854 | Msa1336130:CDS | 25.0% |
| !! | ATCTTTCAAGTCATAACTTA+AGG | - | tig0000801:9997-10016 | None:intergenic | 25.0% |
| ! | TTAAGTTATGACTTGAAAGA+TGG | + | tig0000801:9996-10015 | Msa1336130:CDS | 25.0% |
| ! | ATGTCCTAATCTTAAAAAGA+TGG | + | tig0000801:10136-10155 | Msa1336130:CDS | 25.0% |
| !!! | ATGACCATCTTTTTAAGATT+AGG | - | tig0000801:10143-10162 | None:intergenic | 25.0% |
| ! | CTTAAAAAGATGGTCATTTA+TGG | + | tig0000801:10146-10165 | Msa1336130:CDS | 25.0% |
| ! | AATCATGAATTCAGTGAATT+TGG | - | tig0000801:10216-10235 | None:intergenic | 25.0% |
| GTATCATATTATCCCATCTT+GGG | + | tig0000801:9055-9074 | Msa1336130:CDS | 30.0% | |
| TATTGAATGAAAGAGTTTGG+AGG | - | tig0000801:9146-9165 | None:intergenic | 30.0% | |
| TTTCATTCAATACATCTGAC+TGG | + | tig0000801:9154-9173 | Msa1336130:CDS | 30.0% | |
| !!! | TGTACACTTTTTCAAACCAA+AGG | + | tig0000801:9225-9244 | Msa1336130:CDS | 30.0% |
| CATCATCCATGAAAATTGTT+AGG | - | tig0000801:9260-9279 | None:intergenic | 30.0% | |
| !! | ATAGACAAGGTTTCAAGTTT+CGG | - | tig0000801:9549-9568 | None:intergenic | 30.0% |
| TGATAAACTCATATTAGTGG+CGG | + | tig0000801:9662-9681 | Msa1336130:CDS | 30.0% | |
| !! | GATCAATTCAAAAGCATCAA+AGG | - | tig0000801:9721-9740 | None:intergenic | 30.0% |
| TATTATCTCCAATGTCAAGA+TGG | - | tig0000801:9791-9810 | None:intergenic | 30.0% | |
| CGTCAAAGTTAAAAAAGCTT+CGG | + | tig0000801:9886-9905 | Msa1336130:CDS | 30.0% | |
| TCTAGGAAAACAAACAGATA+TGG | - | tig0000801:9961-9980 | None:intergenic | 30.0% | |
| TCAAGTCATAACTTAAGGAA+AGG | - | tig0000801:9992-10011 | None:intergenic | 30.0% | |
| !!! | AATGTGGTTGTTTTAGAACT+TGG | + | tig0000801:10059-10078 | Msa1336130:CDS | 30.0% |
| ACTGAATTCATGATTCAACT+AGG | + | tig0000801:10221-10240 | Msa1336130:CDS | 30.0% | |
| GTATCATATTATCCCATCTT+GGG | + | tig0000801:9055-9074 | Msa1336130:CDS | 30.0% | |
| TATTGAATGAAAGAGTTTGG+AGG | - | tig0000801:9146-9165 | None:intergenic | 30.0% | |
| TTTCATTCAATACATCTGAC+TGG | + | tig0000801:9154-9173 | Msa1336130:CDS | 30.0% | |
| !!! | TGTACACTTTTTCAAACCAA+AGG | + | tig0000801:9225-9244 | Msa1336130:CDS | 30.0% |
| CATCATCCATGAAAATTGTT+AGG | - | tig0000801:9260-9279 | None:intergenic | 30.0% | |
| !! | ATAGACAAGGTTTCAAGTTT+CGG | - | tig0000801:9549-9568 | None:intergenic | 30.0% |
| TGATAAACTCATATTAGTGG+CGG | + | tig0000801:9662-9681 | Msa1336130:CDS | 30.0% | |
| !! | GATCAATTCAAAAGCATCAA+AGG | - | tig0000801:9721-9740 | None:intergenic | 30.0% |
| TATTATCTCCAATGTCAAGA+TGG | - | tig0000801:9791-9810 | None:intergenic | 30.0% | |
| CGTCAAAGTTAAAAAAGCTT+CGG | + | tig0000801:9886-9905 | Msa1336130:CDS | 30.0% | |
| TCTAGGAAAACAAACAGATA+TGG | - | tig0000801:9961-9980 | None:intergenic | 30.0% | |
| TCAAGTCATAACTTAAGGAA+AGG | - | tig0000801:9992-10011 | None:intergenic | 30.0% | |
| !!! | AATGTGGTTGTTTTAGAACT+TGG | + | tig0000801:10059-10078 | Msa1336130:CDS | 30.0% |
| ACTGAATTCATGATTCAACT+AGG | + | tig0000801:10221-10240 | Msa1336130:CDS | 30.0% | |
| GGTATCATATTATCCCATCT+TGG | + | tig0000801:9054-9073 | Msa1336130:CDS | 35.0% | |
| !! | CATCCTTAACTTGCAAGAAA+TGG | + | tig0000801:9100-9119 | Msa1336130:CDS | 35.0% |
| TCTCCATTTCTTGCAAGTTA+AGG | - | tig0000801:9106-9125 | None:intergenic | 35.0% | |
| AGAGCAAATTTCGCGATATA+GGG | - | tig0000801:9181-9200 | None:intergenic | 35.0% | |
| TAGAGCAAATTTCGCGATAT+AGG | - | tig0000801:9182-9201 | None:intergenic | 35.0% | |
| ATATCATTGAGAAATGCAGC+AGG | + | tig0000801:9379-9398 | Msa1336130:CDS | 35.0% | |
| TTCTGGACAAACAATAGACA+AGG | - | tig0000801:9562-9581 | None:intergenic | 35.0% | |
| ! | AAAGATGGAGTGCTTCATTA+TGG | + | tig0000801:10011-10030 | Msa1336130:CDS | 35.0% |
| ! | GTTGTCTTTTCTGATGAATG+TGG | + | tig0000801:10043-10062 | Msa1336130:CDS | 35.0% |
| !!! | TGGTTGTTTTAGAACTTGGA+TGG | + | tig0000801:10063-10082 | Msa1336130:CDS | 35.0% |
| ! | TCAGTGATCTTTTCTCAGTT+TGG | + | tig0000801:10093-10112 | Msa1336130:CDS | 35.0% |
| ! | CAGTGATCTTTTCTCAGTTT+GGG | + | tig0000801:10094-10113 | Msa1336130:CDS | 35.0% |
| GGTATCATATTATCCCATCT+TGG | + | tig0000801:9054-9073 | Msa1336130:CDS | 35.0% | |
| !! | CATCCTTAACTTGCAAGAAA+TGG | + | tig0000801:9100-9119 | Msa1336130:CDS | 35.0% |
| TCTCCATTTCTTGCAAGTTA+AGG | - | tig0000801:9106-9125 | None:intergenic | 35.0% | |
| AGAGCAAATTTCGCGATATA+GGG | - | tig0000801:9181-9200 | None:intergenic | 35.0% | |
| TAGAGCAAATTTCGCGATAT+AGG | - | tig0000801:9182-9201 | None:intergenic | 35.0% | |
| ATATCATTGAGAAATGCAGC+AGG | + | tig0000801:9379-9398 | Msa1336130:CDS | 35.0% | |
| TTCTGGACAAACAATAGACA+AGG | - | tig0000801:9562-9581 | None:intergenic | 35.0% | |
| ! | AAAGATGGAGTGCTTCATTA+TGG | + | tig0000801:10011-10030 | Msa1336130:CDS | 35.0% |
| ! | GTTGTCTTTTCTGATGAATG+TGG | + | tig0000801:10043-10062 | Msa1336130:CDS | 35.0% |
| !!! | TGGTTGTTTTAGAACTTGGA+TGG | + | tig0000801:10063-10082 | Msa1336130:CDS | 35.0% |
| ! | TCAGTGATCTTTTCTCAGTT+TGG | + | tig0000801:10093-10112 | Msa1336130:CDS | 35.0% |
| ! | CAGTGATCTTTTCTCAGTTT+GGG | + | tig0000801:10094-10113 | Msa1336130:CDS | 35.0% |
| GAGCAAATTTCGCGATATAG+GGG | - | tig0000801:9180-9199 | None:intergenic | 40.0% | |
| ! | CGAAATTTGCTCTAGTCACT+TGG | + | tig0000801:9188-9207 | Msa1336130:CDS | 40.0% |
| ACATAAGCCAAGCAATGACA+GGG | - | tig0000801:9302-9321 | None:intergenic | 40.0% | |
| TACATAAGCCAAGCAATGAC+AGG | - | tig0000801:9303-9322 | None:intergenic | 40.0% | |
| TTGCTTGGCTTATGTATACG+AGG | + | tig0000801:9307-9326 | Msa1336130:CDS | 40.0% | |
| TGCTTGGCTTATGTATACGA+GGG | + | tig0000801:9308-9327 | Msa1336130:CDS | 40.0% | |
| GAAATGCAGCAGGAAAAAGT+TGG | + | tig0000801:9389-9408 | Msa1336130:CDS | 40.0% | |
| !! | AAAGTTGGAGGTTTTGACCT+TGG | + | tig0000801:9404-9423 | Msa1336130:CDS | 40.0% |
| ! | TTTTGTTAGCATCTCAGCGT+TGG | + | tig0000801:9497-9516 | Msa1336130:CDS | 40.0% |
| GAATCTGACATAGCGATTTC+TGG | - | tig0000801:9579-9598 | None:intergenic | 40.0% | |
| AATCGCTATGTCAGATTCAG+AGG | + | tig0000801:9581-9600 | Msa1336130:CDS | 40.0% | |
| AGTGTCATCCATCTTGACAT+TGG | + | tig0000801:9780-9799 | Msa1336130:CDS | 40.0% | |
| TACACACATCTACGATCTCA+AGG | - | tig0000801:9821-9840 | None:intergenic | 40.0% | |
| AGTTAAAAAAGCTTCGGCTG+TGG | + | tig0000801:9892-9911 | Msa1336130:CDS | 40.0% | |
| ! | AAGGAAAGGTGCGTTAATCT+AGG | - | tig0000801:9978-9997 | None:intergenic | 40.0% |
| ! | TGCTTCATTATGGCTTGCAA+GGG | + | tig0000801:10021-10040 | Msa1336130:CDS | 40.0% |
| GAGCAAATTTCGCGATATAG+GGG | - | tig0000801:9180-9199 | None:intergenic | 40.0% | |
| ! | CGAAATTTGCTCTAGTCACT+TGG | + | tig0000801:9188-9207 | Msa1336130:CDS | 40.0% |
| ACATAAGCCAAGCAATGACA+GGG | - | tig0000801:9302-9321 | None:intergenic | 40.0% | |
| TACATAAGCCAAGCAATGAC+AGG | - | tig0000801:9303-9322 | None:intergenic | 40.0% | |
| TTGCTTGGCTTATGTATACG+AGG | + | tig0000801:9307-9326 | Msa1336130:CDS | 40.0% | |
| TGCTTGGCTTATGTATACGA+GGG | + | tig0000801:9308-9327 | Msa1336130:CDS | 40.0% | |
| GAAATGCAGCAGGAAAAAGT+TGG | + | tig0000801:9389-9408 | Msa1336130:CDS | 40.0% | |
| !! | AAAGTTGGAGGTTTTGACCT+TGG | + | tig0000801:9404-9423 | Msa1336130:CDS | 40.0% |
| ! | TTTTGTTAGCATCTCAGCGT+TGG | + | tig0000801:9497-9516 | Msa1336130:CDS | 40.0% |
| GAATCTGACATAGCGATTTC+TGG | - | tig0000801:9579-9598 | None:intergenic | 40.0% | |
| AATCGCTATGTCAGATTCAG+AGG | + | tig0000801:9581-9600 | Msa1336130:CDS | 40.0% | |
| AGTGTCATCCATCTTGACAT+TGG | + | tig0000801:9780-9799 | Msa1336130:CDS | 40.0% | |
| TACACACATCTACGATCTCA+AGG | - | tig0000801:9821-9840 | None:intergenic | 40.0% | |
| AGTTAAAAAAGCTTCGGCTG+TGG | + | tig0000801:9892-9911 | Msa1336130:CDS | 40.0% | |
| ! | AAGGAAAGGTGCGTTAATCT+AGG | - | tig0000801:9978-9997 | None:intergenic | 40.0% |
| ! | TGCTTCATTATGGCTTGCAA+GGG | + | tig0000801:10021-10040 | Msa1336130:CDS | 40.0% |
| GATCTTCCTGTTGAAGTGGT+CGG | + | tig0000801:9033-9052 | Msa1336130:CDS | 45.0% | |
| ATGATACCGACCACTTCAAC+AGG | - | tig0000801:9042-9061 | None:intergenic | 45.0% | |
| GCAAGAAATGGAGAGAAGCT+TGG | + | tig0000801:9112-9131 | Msa1336130:CDS | 45.0% | |
| ! | GCAGCGCCTAACAATTTTCA+TGG | + | tig0000801:9251-9270 | Msa1336130:CDS | 45.0% |
| CATAAGCCAAGCAATGACAG+GGG | - | tig0000801:9301-9320 | None:intergenic | 45.0% | |
| ATGCAGCAGGAAAAAGTTGG+AGG | + | tig0000801:9392-9411 | Msa1336130:CDS | 45.0% | |
| CTTGGCTAGCAATCCTATCT+CGG | + | tig0000801:9422-9441 | Msa1336130:CDS | 45.0% | |
| TTGGCTAGCAATCCTATCTC+GGG | + | tig0000801:9423-9442 | Msa1336130:CDS | 45.0% | |
| GCTTAGCAGCTCTTCTTTGA+AGG | + | tig0000801:9614-9633 | Msa1336130:CDS | 45.0% | |
| !!! | GAGTGTTGTTTTTGACGACG+AGG | + | tig0000801:9914-9933 | Msa1336130:CDS | 45.0% |
| !! | TGTTTTTGACGACGAGGATG+AGG | + | tig0000801:9920-9939 | Msa1336130:CDS | 45.0% |
| ! | GTGCTTCATTATGGCTTGCA+AGG | + | tig0000801:10020-10039 | Msa1336130:CDS | 45.0% |
| ! | CTTTTCTCAGTTTGGGTAGC+TGG | + | tig0000801:10101-10120 | Msa1336130:CDS | 45.0% |
| ! | AGTTTGGGTAGCTGGACTTT+TGG | + | tig0000801:10109-10128 | Msa1336130:CDS | 45.0% |
| GATCTTCCTGTTGAAGTGGT+CGG | + | tig0000801:9033-9052 | Msa1336130:CDS | 45.0% | |
| ATGATACCGACCACTTCAAC+AGG | - | tig0000801:9042-9061 | None:intergenic | 45.0% | |
| GCAAGAAATGGAGAGAAGCT+TGG | + | tig0000801:9112-9131 | Msa1336130:CDS | 45.0% | |
| ! | GCAGCGCCTAACAATTTTCA+TGG | + | tig0000801:9251-9270 | Msa1336130:CDS | 45.0% |
| CATAAGCCAAGCAATGACAG+GGG | - | tig0000801:9301-9320 | None:intergenic | 45.0% | |
| ATGCAGCAGGAAAAAGTTGG+AGG | + | tig0000801:9392-9411 | Msa1336130:CDS | 45.0% | |
| CTTGGCTAGCAATCCTATCT+CGG | + | tig0000801:9422-9441 | Msa1336130:CDS | 45.0% | |
| TTGGCTAGCAATCCTATCTC+GGG | + | tig0000801:9423-9442 | Msa1336130:CDS | 45.0% | |
| GCTTAGCAGCTCTTCTTTGA+AGG | + | tig0000801:9614-9633 | Msa1336130:CDS | 45.0% | |
| !!! | GAGTGTTGTTTTTGACGACG+AGG | + | tig0000801:9914-9933 | Msa1336130:CDS | 45.0% |
| !! | TGTTTTTGACGACGAGGATG+AGG | + | tig0000801:9920-9939 | Msa1336130:CDS | 45.0% |
| ! | GTGCTTCATTATGGCTTGCA+AGG | + | tig0000801:10020-10039 | Msa1336130:CDS | 45.0% |
| ! | CTTTTCTCAGTTTGGGTAGC+TGG | + | tig0000801:10101-10120 | Msa1336130:CDS | 45.0% |
| ! | AGTTTGGGTAGCTGGACTTT+TGG | + | tig0000801:10109-10128 | Msa1336130:CDS | 45.0% |
| GGAGGATCTTCCTGTTGAAG+TGG | + | tig0000801:9029-9048 | Msa1336130:CDS | 50.0% | |
| TATCCCATCTTGGGTCTGCT+AGG | + | tig0000801:9064-9083 | Msa1336130:CDS | 50.0% | |
| ATCCCATCTTGGGTCTGCTA+GGG | + | tig0000801:9065-9084 | Msa1336130:CDS | 50.0% | |
| ATCCCTAGCAGACCCAAGAT+GGG | - | tig0000801:9070-9089 | None:intergenic | 50.0% | |
| ! | TGTTAGGCGCTGCAATCCTT+TGG | - | tig0000801:9244-9263 | None:intergenic | 50.0% |
| CTGTTACCCCTGTCATTGCT+TGG | + | tig0000801:9292-9311 | Msa1336130:CDS | 50.0% | |
| CGAGATAGGATTGCTAGCCA+AGG | - | tig0000801:9424-9443 | None:intergenic | 50.0% | |
| AACGACAGCGACTTCAAGCA+AGG | - | tig0000801:9474-9493 | None:intergenic | 50.0% | |
| ! | TGGGTAGCTGGACTTTTGGA+AGG | + | tig0000801:10113-10132 | Msa1336130:CDS | 50.0% |
| GGAGGATCTTCCTGTTGAAG+TGG | + | tig0000801:9029-9048 | Msa1336130:CDS | 50.0% | |
| TATCCCATCTTGGGTCTGCT+AGG | + | tig0000801:9064-9083 | Msa1336130:CDS | 50.0% | |
| ATCCCATCTTGGGTCTGCTA+GGG | + | tig0000801:9065-9084 | Msa1336130:CDS | 50.0% | |
| ATCCCTAGCAGACCCAAGAT+GGG | - | tig0000801:9070-9089 | None:intergenic | 50.0% | |
| ! | TGTTAGGCGCTGCAATCCTT+TGG | - | tig0000801:9244-9263 | None:intergenic | 50.0% |
| CTGTTACCCCTGTCATTGCT+TGG | + | tig0000801:9292-9311 | Msa1336130:CDS | 50.0% | |
| CGAGATAGGATTGCTAGCCA+AGG | - | tig0000801:9424-9443 | None:intergenic | 50.0% | |
| AACGACAGCGACTTCAAGCA+AGG | - | tig0000801:9474-9493 | None:intergenic | 50.0% | |
| ! | TGGGTAGCTGGACTTTTGGA+AGG | + | tig0000801:10113-10132 | Msa1336130:CDS | 50.0% |
| CATCCCTAGCAGACCCAAGA+TGG | - | tig0000801:9071-9090 | None:intergenic | 55.0% | |
| TTCGGCTCAACACCCGAGAT+AGG | - | tig0000801:9438-9457 | None:intergenic | 55.0% | |
| CATCCCTAGCAGACCCAAGA+TGG | - | tig0000801:9071-9090 | None:intergenic | 55.0% | |
| TTCGGCTCAACACCCGAGAT+AGG | - | tig0000801:9438-9457 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0000801 | gene | 9027 | 10286 | 9027 | ID=Msa1336130;Name=Msa1336130 |
| tig0000801 | mRNA | 9027 | 10286 | 9027 | ID=Msa1336130-mRNA-1;Parent=Msa1336130;Name=Msa1336130-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|-1|0|1|-1|1|1|0|419 |
| tig0000801 | exon | 9027 | 10286 | 9027 | ID=Msa1336130-mRNA-1:exon:603;Parent=Msa1336130-mRNA-1 |
| tig0000801 | CDS | 9027 | 10286 | 9027 | ID=Msa1336130-mRNA-1:cds;Parent=Msa1336130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
