AlfalfaGEDB | Msa1396820

M. sativa cultivar zhongmu-4 / Msa1396820

KEGG: -
GO: GO:0006950 GO:0006952 GO:0008150 GO:0050896
PFAM: PF00967.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1396820	XP_013468974.1	95.833	144	6	0	8	151	1	144	4.08e-96	285

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1396820	sp\|P29063\|PR4B_TOBAC	68.027	147	45	1	6	152	2	146	9.92e-71	213

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1396820	A0A072VN05	95.833	144	6	0	8	151	1	144	1.95e-96	285

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014790	Msa1396820	0.812160	4.875013e-51	-8.615850e-47
Msa0032290	Msa1396820	0.817393	3.375984e-52	-8.615850e-47
Msa0072830	Msa1396820	0.823316	1.479142e-53	-8.615850e-47
Msa0072860	Msa1396820	0.824893	6.305507e-54	-8.615850e-47
Msa0079440	Msa1396820	0.838837	2.268618e-57	-8.615850e-47
Msa0089010	Msa1396820	0.823750	1.170550e-53	-8.615850e-47
Msa0108970	Msa1396820	0.803706	3.067131e-49	-8.615850e-47
Msa0607390	Msa1396820	0.828874	7.053479e-55	-8.615850e-47
Msa0607400	Msa1396820	0.837908	3.936289e-57	-8.615850e-47
Msa0607410	Msa1396820	0.806926	6.489776e-50	-8.615850e-47
Msa0630060	Msa1396820	0.838489	2.790455e-57	-8.615850e-47
Msa0739390	Msa1396820	0.815311	9.865585e-52	-8.615850e-47
Msa0752580	Msa1396820	0.884345	2.075487e-71	-8.615850e-47
Msa0754500	Msa1396820	0.881762	1.832448e-70	-8.615850e-47
Msa0770890	Msa1396820	0.833857	4.190874e-56	-8.615850e-47
Msa0775580	Msa1396820	0.817279	3.581365e-52	-8.615850e-47
Msa0782090	Msa1396820	0.808451	3.077314e-50	-8.615850e-47
Msa0811000	Msa1396820	0.801595	8.359021e-49	-8.615850e-47
Msa0813030	Msa1396820	0.845650	3.557667e-59	-8.615850e-47
Msa0819740	Msa1396820	0.805119	1.556598e-49	-8.615850e-47
Msa0830900	Msa1396820	0.896570	3.250194e-76	-8.615850e-47
Msa0151860	Msa1396820	0.808486	3.024648e-50	-8.615850e-47
Msa0153440	Msa1396820	0.816791	4.608403e-52	-8.615850e-47
Msa0180290	Msa1396820	0.825273	5.127842e-54	-8.615850e-47
Msa0193760	Msa1396820	0.808125	3.611836e-50	-8.615850e-47
Msa0211670	Msa1396820	0.829238	5.757856e-55	-8.615850e-47
Msa0212210	Msa1396820	0.800145	1.653649e-48	-8.615850e-47
Msa0232860	Msa1396820	0.863906	1.781426e-64	-8.615850e-47
Msa0235550	Msa1396820	0.801723	7.872004e-49	-8.615850e-47
Msa1225820	Msa1396820	0.826287	2.947448e-54	-8.615850e-47
Msa1238130	Msa1396820	0.800632	1.315539e-48	-8.615850e-47
Msa1246560	Msa1396820	0.808416	3.131012e-50	-8.615850e-47
Msa1247720	Msa1396820	0.801387	9.223430e-49	-8.615850e-47
Msa1279850	Msa1396820	0.821763	3.395964e-53	-8.615850e-47
Msa1279860	Msa1396820	0.848024	7.975443e-60	-8.615850e-47
Msa1279870	Msa1396820	0.837049	6.536698e-57	-8.615850e-47
Msa1285820	Msa1396820	0.848610	5.493687e-60	-8.615850e-47
Msa1296650	Msa1396820	0.842711	2.187808e-58	-8.615850e-47
Msa0389050	Msa1396820	0.830519	2.805966e-55	-8.615850e-47
Msa0389060	Msa1396820	0.823717	1.191713e-53	-8.615850e-47
Msa0410960	Msa1396820	0.804635	1.965478e-49	-8.615850e-47
Msa0452010	Msa1396820	0.811688	6.178807e-51	-8.615850e-47
Msa0455260	Msa1396820	0.804880	1.746917e-49	-8.615850e-47
Msa0481320	Msa1396820	0.807810	4.214399e-50	-8.615850e-47
Msa1005490	Msa1396820	0.804129	2.504813e-49	-8.615850e-47
Msa1006680	Msa1396820	0.822646	2.119122e-53	-8.615850e-47
Msa1009150	Msa1396820	0.806627	7.504595e-50	-8.615850e-47
Msa1009170	Msa1396820	0.851667	7.646606e-61	-8.615850e-47
Msa1009220	Msa1396820	0.826623	2.450925e-54	-8.615850e-47
Msa1047700	Msa1396820	0.802782	4.764567e-49	-8.615850e-47
Msa1049950	Msa1396820	0.806637	7.467982e-50	-8.615850e-47
Msa1050500	Msa1396820	0.828535	8.519865e-55	-8.615850e-47
Msa1073500	Msa1396820	0.803068	4.157692e-49	-8.615850e-47
Msa1091730	Msa1396820	0.810812	9.570326e-51	-8.615850e-47
Msa1093390	Msa1396820	0.805176	1.514642e-49	-8.615850e-47
Msa1098340	Msa1396820	0.835474	1.643567e-56	-8.615850e-47
Msa1098350	Msa1396820	0.831621	1.504873e-55	-8.615850e-47
Msa1098380	Msa1396820	0.853741	1.955596e-61	-8.615850e-47
Msa0254190	Msa1396820	0.804216	2.402462e-49	-8.615850e-47
Msa0274520	Msa1396820	0.811989	5.312009e-51	-8.615850e-47
Msa0350380	Msa1396820	0.822302	2.547067e-53	-8.615850e-47
Msa1107830	Msa1396820	0.823780	1.151807e-53	-8.615850e-47
Msa1135660	Msa1396820	0.842150	3.081662e-58	-8.615850e-47
Msa1138450	Msa1396820	0.859535	3.867903e-63	-8.615850e-47
Msa1138480	Msa1396820	0.862239	5.833370e-64	-8.615850e-47
Msa1138490	Msa1396820	0.819654	1.037060e-52	-8.615850e-47
Msa1139240	Msa1396820	0.813304	2.739524e-51	-8.615850e-47
Msa1140460	Msa1396820	0.815230	1.028427e-51	-8.615850e-47
Msa1182780	Msa1396820	0.822294	2.557904e-53	-8.615850e-47
Msa1182800	Msa1396820	0.812195	4.791126e-51	-8.615850e-47
Msa1182830	Msa1396820	0.819278	1.263392e-52	-8.615850e-47
Msa1204430	Msa1396820	0.846414	2.204427e-59	-8.615850e-47
Msa0499710	Msa1396820	0.801582	8.412067e-49	-8.615850e-47
Msa0553290	Msa1396820	0.817562	3.092449e-52	-8.615850e-47
Msa0568120	Msa1396820	0.806917	6.517366e-50	-8.615850e-47
Msa0599250	Msa1396820	0.805950	1.042062e-49	-8.615850e-47
Msa0849130	Msa1396820	0.825461	4.629407e-54	-8.615850e-47
Msa0853500	Msa1396820	0.842166	3.053406e-58	-8.615850e-47
Msa0862020	Msa1396820	0.801111	1.050534e-48	-8.615850e-47
Msa0867810	Msa1396820	0.833055	6.642351e-56	-8.615850e-47
Msa0883660	Msa1396820	0.801414	9.106876e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1396820	MtrunA17_Chr1g0190651	95.833	144	6	0	8	151	1	144	3.75e-100	285
Msa1396820	MtrunA17_Chr1g0190671	90.278	144	14	0	8	151	1	144	5.28e-94	269
Msa1396820	MtrunA17_Chr1g0190661	84.722	144	22	0	8	151	1	144	7.86e-90	258
Msa1396820	MtrunA17_Chr7g0274181	70.000	120	36	0	36	155	69	188	1.07e-59	184
Msa1396820	MtrunA17_Chr1g0190641	59.124	137	55	1	15	151	4	139	3.68e-57	176
Msa1396820	MtrunA17_Chr6g0484021	52.866	157	53	5	17	156	31	183	2.56e-46	159
Msa1396820	MtrunA17_Chr6g0483971	52.174	138	59	3	17	152	11	143	9.62e-44	146
Msa1396820	MtrunA17_Chr6g0484031	48.227	141	61	3	18	151	10	145	2.02e-37	134
Msa1396820	MtrunA17_Chr6g0484041	49.333	150	56	5	17	151	23	167	3.14e-36	132

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1396820	AT3G04720.1	65.468	139	48	0	31	169	71	209	2.44e-62	191

Find 75 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCTATATAACTGTTGATTT+TGG	0.145608	tig0022086:+74950	Msa1396820:three_prime_UTR
GGTATATGTGCCTTTGTTTC+GGG	0.209498	tig0022086:-74804	None:intergenic
CTTCGGTAGATGATAGAATT+TGG	0.211776	tig0022086:-74999	None:intergenic
CGGTATATGTGCCTTTGTTT+CGG	0.230641	tig0022086:-74805	None:intergenic
GAAACACACAAAAGAGAAAA+TGG	0.283121	tig0022086:+73939	Msa1396820:CDS
TTGTCATGGCGTAGCAAATA+TGG	0.308099	tig0022086:+74141	Msa1396820:CDS
AGAATTACACCCTCAAAATA+TGG	0.309584	tig0022086:+75182	Msa1396820:three_prime_UTR
GAAATTCAAATTTAACAGTT+TGG	0.311730	tig0022086:-74977	None:intergenic
TCTCTGCCTGTTGGCCCAGC+TGG	0.347389	tig0022086:-74183	None:intergenic
ACAGAGAACTTTGAGCTTGT+TGG	0.365729	tig0022086:+73969	Msa1396820:CDS
CGTATCTAAGACCCTAGGTT+AGG	0.376640	tig0022086:+74910	Msa1396820:three_prime_UTR
ACAACCCTCAGAATATTAAC+TGG	0.383186	tig0022086:+74067	Msa1396820:CDS
CATCTACCGAAGTTGTTACT+AGG	0.385046	tig0022086:+75010	Msa1396820:three_prime_UTR
AGTCTACCTTGCACAACTTT+GGG	0.391262	tig0022086:-75079	None:intergenic
TAGTCTACCTTGCACAACTT+TGG	0.404728	tig0022086:-75080	None:intergenic
TCCAAAATCAACAGTTATAT+AGG	0.428717	tig0022086:-74951	None:intergenic
GTCAGAGTGCAAACAACGTT+AGG	0.437077	tig0022086:+74028	Msa1396820:CDS
TGTGGACCAGCTGGGCCAAC+AGG	0.437465	tig0022086:+74177	Msa1396820:CDS
CCAGTGTATACTGTGCTACT+TGG	0.451011	tig0022086:+74103	Msa1396820:CDS
GTATCTAAGACCCTAGGTTA+GGG	0.452442	tig0022086:+74911	Msa1396820:three_prime_UTR
GTTAATCGAACAGTTGTAGC+TGG	0.455198	tig0022086:-75134	None:intergenic
TAACTGTAAGGTGACCCTTC+TGG	0.462881	tig0022086:-74606	None:intergenic
TCAAATTGATACCAATGGAC+AGG	0.479120	tig0022086:+74579	Msa1396820:CDS
CAAAGCTATAGTTAACTGTA+AGG	0.486461	tig0022086:-74618	None:intergenic
GAATACTGCAACTGGTGCTC+AGG	0.493434	tig0022086:+74492	Msa1396820:CDS
TACTAGGTTGAGTCACGACC+AGG	0.493934	tig0022086:+75026	Msa1396820:three_prime_UTR
TGCTACGCCATGACAAGGGC+TGG	0.498360	tig0022086:-74134	None:intergenic
GGTGCACAAATTTATTGACT+TGG	0.500571	tig0022086:-73903	None:intergenic
ATAGTGGACCAGTGCTCAAA+TGG	0.501061	tig0022086:+74526	Msa1396820:CDS
GCTCTCTTTAAGACGTTTCG+TGG	0.504785	tig0022086:+75051	Msa1396820:three_prime_UTR
AATGTAGCAAACAGCTCAAA+CGG	0.507126	tig0022086:+74737	Msa1396820:three_prime_UTR
CTATCAACCACGCCGCCTCC+AGG	0.521781	tig0022086:+75100	Msa1396820:three_prime_UTR
CAGGTGACGAATACTGCAAC+TGG	0.524837	tig0022086:+74484	Msa1396820:intron
CCGCAAGAATCTCTGCCTGT+TGG	0.525418	tig0022086:-74192	None:intergenic
CAGTGTATACTGTGCTACTT+GGG	0.526139	tig0022086:+74104	Msa1396820:CDS
TATAGCTTTGTTAATTGCAA+CGG	0.526692	tig0022086:+74631	Msa1396820:CDS
ATGATTTCGCACTTGTACGC+AGG	0.527382	tig0022086:-74846	None:intergenic
GTGATTTATTGACTCATCAC+TGG	0.540907	tig0022086:+74653	Msa1396820:CDS
TTCAATCAAATTGATACCAA+TGG	0.541175	tig0022086:+74574	Msa1396820:CDS
CCAGTGCTCAAATGGTGGAC+TGG	0.542110	tig0022086:+74534	Msa1396820:CDS
TTGATCGAAGCCACTCGATA+CGG	0.542820	tig0022086:+75214	Msa1396820:three_prime_UTR
CTTCTGGTAACCCTGTCCAT+TGG	0.545362	tig0022086:-74590	None:intergenic
CCAGTCCACCATTTGAGCAC+TGG	0.554865	tig0022086:-74534	None:intergenic
TAATCCCAGTTAATATTCTG+AGG	0.556889	tig0022086:-74072	None:intergenic
AATGGACAGGGTTACCAGAA+GGG	0.563174	tig0022086:+74592	Msa1396820:CDS
TTAATCGAACAGTTGTAGCT+GGG	0.571395	tig0022086:-75133	None:intergenic
TGCAACTGGTGCTCAGGTAA+CGG	0.577038	tig0022086:+74498	Msa1396820:CDS
TCAGAGTGCAAACAACGTTA+GGG	0.580216	tig0022086:+74029	Msa1396820:CDS
CAACCCTCAGAATATTAACT+GGG	0.582070	tig0022086:+74068	Msa1396820:CDS
ATGCAAACCAGCCCTTGTCA+TGG	0.583448	tig0022086:+74127	Msa1396820:CDS
ATATTTGCTACGCCATGACA+AGG	0.584472	tig0022086:-74139	None:intergenic
CAAATTGATACCAATGGACA+GGG	0.591064	tig0022086:+74580	Msa1396820:CDS
CATGGCGTAGCAAATATGGT+TGG	0.604474	tig0022086:+74145	Msa1396820:CDS
TCAGGTAACGGTGAGAATAG+TGG	0.610066	tig0022086:+74510	Msa1396820:CDS
TGTGTTTCATAGTAGAAGCA+TGG	0.611414	tig0022086:-73924	None:intergenic
CAATGGACAGGGTTACCAGA+AGG	0.617429	tig0022086:+74591	Msa1396820:CDS
ATCTAAGACCCTAGGTTAGG+GGG	0.617950	tig0022086:+74913	Msa1396820:three_prime_UTR
TTAAAAGAAACCCGAAACAA+AGG	0.621655	tig0022086:+74794	Msa1396820:three_prime_UTR
TAGGGTCTTAGATACGCCGC+TGG	0.623707	tig0022086:-74903	None:intergenic
GTGGACCAGTGCTCAAATGG+TGG	0.625188	tig0022086:+74529	Msa1396820:CDS
AATCCCAGTTAATATTCTGA+GGG	0.629321	tig0022086:-74071	None:intergenic
TATCTAAGACCCTAGGTTAG+GGG	0.645324	tig0022086:+74912	Msa1396820:three_prime_UTR
GCACTACCCAAAGTTGTGCA+AGG	0.648979	tig0022086:+75073	Msa1396820:three_prime_UTR
ATGTGAACATTCACGTCCAG+CGG	0.654233	tig0022086:+74887	Msa1396820:three_prime_UTR
ACGTCTTAAAGAGAGCGACC+TGG	0.654665	tig0022086:-75044	None:intergenic
CCAAGTAGCACAGTATACAC+TGG	0.657659	tig0022086:-74103	None:intergenic
TCACTAGCATCGTTCCCACA+AGG	0.659432	tig0022086:-74002	None:intergenic
AGCGGCGTATCTAAGACCCT+AGG	0.659664	tig0022086:+74905	Msa1396820:three_prime_UTR
TATTTGCTACGCCATGACAA+GGG	0.664421	tig0022086:-74138	None:intergenic
CCAACAGGCAGAGATTCTTG+CGG	0.667208	tig0022086:+74192	Msa1396820:CDS
ACTCAACCTAGTAACAACTT+CGG	0.694836	tig0022086:-75016	None:intergenic
TTGAACGGTTTCGAATAGAG+CGG	0.700034	tig0022086:-75244	None:intergenic
CGGTTACGTACCGTATCGAG+TGG	0.702036	tig0022086:-75224	None:intergenic
GGTTCACTAGATAGTGCATG+CGG	0.724459	tig0022086:-74825	None:intergenic
GTGGGAACGATGCTAGTGAG+TGG	0.745826	tig0022086:+74006	Msa1396820:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTCAATTAATGATAGTATTG+TGG	+	tig0022086:74446-74465	Msa1396820:intron	20.0%
!!!	TGCTACATTAGTTTTATTTA+CGG	-	tig0022086:74726-74745	None:intergenic	20.0%
!!	GAAATTCAAATTTAACAGTT+TGG	-	tig0022086:74980-74999	None:intergenic	20.0%
!!	TTCAATTAATGATAGTATTG+TGG	+	tig0022086:74446-74465	Msa1396820:intron	20.0%
!!!	TGCTACATTAGTTTTATTTA+CGG	-	tig0022086:74726-74745	None:intergenic	20.0%
!!	GAAATTCAAATTTAACAGTT+TGG	-	tig0022086:74980-74999	None:intergenic	20.0%
!!!	TTTTTCTAAAATGAGAGAAG+TGG	-	tig0022086:74237-74256	None:intergenic	25.0%
!!	ACTCACTAATTTCTTCATTT+TGG	+	tig0022086:74331-74350	Msa1396820:intron	25.0%
!!	CTCACTAATTTCTTCATTTT+GGG	+	tig0022086:74332-74351	Msa1396820:intron	25.0%
!!	TCACTAATTTCTTCATTTTG+GGG	+	tig0022086:74333-74352	Msa1396820:intron	25.0%
!	TTCAATCAAATTGATACCAA+TGG	+	tig0022086:74574-74593	Msa1396820:CDS	25.0%
!!!	TATAGCTTTGTTAATTGCAA+CGG	+	tig0022086:74631-74650	Msa1396820:CDS	25.0%
!!!	CTACATTAGTTTTATTTACG+GGG	-	tig0022086:74724-74743	None:intergenic	25.0%
!!!	GCTACATTAGTTTTATTTAC+GGG	-	tig0022086:74725-74744	None:intergenic	25.0%
!!!	ACCTATATAACTGTTGATTT+TGG	+	tig0022086:74950-74969	Msa1396820:three_prime_UTR	25.0%
!	TCCAAAATCAACAGTTATAT+AGG	-	tig0022086:74954-74973	None:intergenic	25.0%
!!!	TTTTTCTAAAATGAGAGAAG+TGG	-	tig0022086:74237-74256	None:intergenic	25.0%
!!	ACTCACTAATTTCTTCATTT+TGG	+	tig0022086:74331-74350	Msa1396820:intron	25.0%
!!	CTCACTAATTTCTTCATTTT+GGG	+	tig0022086:74332-74351	Msa1396820:intron	25.0%
!!	TCACTAATTTCTTCATTTTG+GGG	+	tig0022086:74333-74352	Msa1396820:intron	25.0%
!	TTCAATCAAATTGATACCAA+TGG	+	tig0022086:74574-74593	Msa1396820:CDS	25.0%
!!!	TATAGCTTTGTTAATTGCAA+CGG	+	tig0022086:74631-74650	Msa1396820:CDS	25.0%
!!!	CTACATTAGTTTTATTTACG+GGG	-	tig0022086:74724-74743	None:intergenic	25.0%
!!!	GCTACATTAGTTTTATTTAC+GGG	-	tig0022086:74725-74744	None:intergenic	25.0%
!!!	ACCTATATAACTGTTGATTT+TGG	+	tig0022086:74950-74969	Msa1396820:three_prime_UTR	25.0%
!	TCCAAAATCAACAGTTATAT+AGG	-	tig0022086:74954-74973	None:intergenic	25.0%
	GAAACACACAAAAGAGAAAA+TGG	+	tig0022086:73939-73958	Msa1396820:CDS	30.0%
	AATCCCAGTTAATATTCTGA+GGG	-	tig0022086:74074-74093	None:intergenic	30.0%
	TAATCCCAGTTAATATTCTG+AGG	-	tig0022086:74075-74094	None:intergenic	30.0%
	AGAAATTAGTGAGTTTGTGT+TGG	-	tig0022086:74325-74344	None:intergenic	30.0%
!	ATTCTCTTTGACTAGCTAAT+TGG	-	tig0022086:74407-74426	None:intergenic	30.0%
	CAAAGCTATAGTTAACTGTA+AGG	-	tig0022086:74621-74640	None:intergenic	30.0%
	GAGTACAACTACAACAAAAA+TGG	+	tig0022086:74770-74789	Msa1396820:three_prime_UTR	30.0%
	TTAAAAGAAACCCGAAACAA+AGG	+	tig0022086:74794-74813	Msa1396820:three_prime_UTR	30.0%
	AGAATTACACCCTCAAAATA+TGG	+	tig0022086:75182-75201	Msa1396820:three_prime_UTR	30.0%
	GAAACACACAAAAGAGAAAA+TGG	+	tig0022086:73939-73958	Msa1396820:CDS	30.0%
	AATCCCAGTTAATATTCTGA+GGG	-	tig0022086:74074-74093	None:intergenic	30.0%
	TAATCCCAGTTAATATTCTG+AGG	-	tig0022086:74075-74094	None:intergenic	30.0%
	AGAAATTAGTGAGTTTGTGT+TGG	-	tig0022086:74325-74344	None:intergenic	30.0%
!	ATTCTCTTTGACTAGCTAAT+TGG	-	tig0022086:74407-74426	None:intergenic	30.0%
	CAAAGCTATAGTTAACTGTA+AGG	-	tig0022086:74621-74640	None:intergenic	30.0%
	GAGTACAACTACAACAAAAA+TGG	+	tig0022086:74770-74789	Msa1396820:three_prime_UTR	30.0%
	TTAAAAGAAACCCGAAACAA+AGG	+	tig0022086:74794-74813	Msa1396820:three_prime_UTR	30.0%
	AGAATTACACCCTCAAAATA+TGG	+	tig0022086:75182-75201	Msa1396820:three_prime_UTR	30.0%
!	GGTGCACAAATTTATTGACT+TGG	-	tig0022086:73906-73925	None:intergenic	35.0%
	TGTGTTTCATAGTAGAAGCA+TGG	-	tig0022086:73927-73946	None:intergenic	35.0%
!!!	TTGGTTTTGTGTTTCCTTGT+GGG	+	tig0022086:73988-74007	Msa1396820:CDS	35.0%
	ACAACCCTCAGAATATTAAC+TGG	+	tig0022086:74067-74086	Msa1396820:CDS	35.0%
	CAACCCTCAGAATATTAACT+GGG	+	tig0022086:74068-74087	Msa1396820:CDS	35.0%
!!	TGTGTTGGTCAGATTTTAGA+GGG	-	tig0022086:74310-74329	None:intergenic	35.0%
!!	TTGTGTTGGTCAGATTTTAG+AGG	-	tig0022086:74311-74330	None:intergenic	35.0%
	TAGCTAGTCAAAGAGAATTG+TGG	+	tig0022086:74409-74428	Msa1396820:intron	35.0%
	TCAAATTGATACCAATGGAC+AGG	+	tig0022086:74579-74598	Msa1396820:CDS	35.0%
	CAAATTGATACCAATGGACA+GGG	+	tig0022086:74580-74599	Msa1396820:CDS	35.0%
!!	GTGATTTATTGACTCATCAC+TGG	+	tig0022086:74653-74672	Msa1396820:CDS	35.0%
	AATGTAGCAAACAGCTCAAA+CGG	+	tig0022086:74737-74756	Msa1396820:three_prime_UTR	35.0%
	CTTCGGTAGATGATAGAATT+TGG	-	tig0022086:75002-75021	None:intergenic	35.0%
	ACTCAACCTAGTAACAACTT+CGG	-	tig0022086:75019-75038	None:intergenic	35.0%
	TTAATCGAACAGTTGTAGCT+GGG	-	tig0022086:75136-75155	None:intergenic	35.0%
!!	ACGATTGAGCCATATTTTGA+GGG	-	tig0022086:75194-75213	None:intergenic	35.0%
!	AACGATTGAGCCATATTTTG+AGG	-	tig0022086:75195-75214	None:intergenic	35.0%
!	GGTGCACAAATTTATTGACT+TGG	-	tig0022086:73906-73925	None:intergenic	35.0%
	TGTGTTTCATAGTAGAAGCA+TGG	-	tig0022086:73927-73946	None:intergenic	35.0%
!!!	TTGGTTTTGTGTTTCCTTGT+GGG	+	tig0022086:73988-74007	Msa1396820:CDS	35.0%
	ACAACCCTCAGAATATTAAC+TGG	+	tig0022086:74067-74086	Msa1396820:CDS	35.0%
	CAACCCTCAGAATATTAACT+GGG	+	tig0022086:74068-74087	Msa1396820:CDS	35.0%
!!	TGTGTTGGTCAGATTTTAGA+GGG	-	tig0022086:74310-74329	None:intergenic	35.0%
!!	TTGTGTTGGTCAGATTTTAG+AGG	-	tig0022086:74311-74330	None:intergenic	35.0%
	TAGCTAGTCAAAGAGAATTG+TGG	+	tig0022086:74409-74428	Msa1396820:intron	35.0%
	TCAAATTGATACCAATGGAC+AGG	+	tig0022086:74579-74598	Msa1396820:CDS	35.0%
	CAAATTGATACCAATGGACA+GGG	+	tig0022086:74580-74599	Msa1396820:CDS	35.0%
!!	GTGATTTATTGACTCATCAC+TGG	+	tig0022086:74653-74672	Msa1396820:CDS	35.0%
	AATGTAGCAAACAGCTCAAA+CGG	+	tig0022086:74737-74756	Msa1396820:three_prime_UTR	35.0%
	CTTCGGTAGATGATAGAATT+TGG	-	tig0022086:75002-75021	None:intergenic	35.0%
	ACTCAACCTAGTAACAACTT+CGG	-	tig0022086:75019-75038	None:intergenic	35.0%
	TTAATCGAACAGTTGTAGCT+GGG	-	tig0022086:75136-75155	None:intergenic	35.0%
!!	ACGATTGAGCCATATTTTGA+GGG	-	tig0022086:75194-75213	None:intergenic	35.0%
!	AACGATTGAGCCATATTTTG+AGG	-	tig0022086:75195-75214	None:intergenic	35.0%
	ACAGAGAACTTTGAGCTTGT+TGG	+	tig0022086:73969-73988	Msa1396820:CDS	40.0%
!!!	GTTGGTTTTGTGTTTCCTTG+TGG	+	tig0022086:73987-74006	Msa1396820:CDS	40.0%
	TCAGAGTGCAAACAACGTTA+GGG	+	tig0022086:74029-74048	Msa1396820:CDS	40.0%
!!	CAGTGTATACTGTGCTACTT+GGG	+	tig0022086:74104-74123	Msa1396820:CDS	40.0%
!	TATTTGCTACGCCATGACAA+GGG	-	tig0022086:74141-74160	None:intergenic	40.0%
!	ATATTTGCTACGCCATGACA+AGG	-	tig0022086:74142-74161	None:intergenic	40.0%
	TTGTCATGGCGTAGCAAATA+TGG	+	tig0022086:74141-74160	Msa1396820:CDS	40.0%
!!!	TATGGTTGGACTGCTTTTTG+TGG	+	tig0022086:74159-74178	Msa1396820:CDS	40.0%
!	GGTATATGTGCCTTTGTTTC+GGG	-	tig0022086:74807-74826	None:intergenic	40.0%
!	CGGTATATGTGCCTTTGTTT+CGG	-	tig0022086:74808-74827	None:intergenic	40.0%
!	GTATCTAAGACCCTAGGTTA+GGG	+	tig0022086:74911-74930	Msa1396820:three_prime_UTR	40.0%
!	TATCTAAGACCCTAGGTTAG+GGG	+	tig0022086:74912-74931	Msa1396820:three_prime_UTR	40.0%
	CATCTACCGAAGTTGTTACT+AGG	+	tig0022086:75010-75029	Msa1396820:three_prime_UTR	40.0%
	AGTCTACCTTGCACAACTTT+GGG	-	tig0022086:75082-75101	None:intergenic	40.0%
	TAGTCTACCTTGCACAACTT+TGG	-	tig0022086:75083-75102	None:intergenic	40.0%
	GTTAATCGAACAGTTGTAGC+TGG	-	tig0022086:75137-75156	None:intergenic	40.0%
	ACAGAGAACTTTGAGCTTGT+TGG	+	tig0022086:73969-73988	Msa1396820:CDS	40.0%
!!!	GTTGGTTTTGTGTTTCCTTG+TGG	+	tig0022086:73987-74006	Msa1396820:CDS	40.0%
	TCAGAGTGCAAACAACGTTA+GGG	+	tig0022086:74029-74048	Msa1396820:CDS	40.0%
!!	CAGTGTATACTGTGCTACTT+GGG	+	tig0022086:74104-74123	Msa1396820:CDS	40.0%
!	TATTTGCTACGCCATGACAA+GGG	-	tig0022086:74141-74160	None:intergenic	40.0%
!	ATATTTGCTACGCCATGACA+AGG	-	tig0022086:74142-74161	None:intergenic	40.0%
	TTGTCATGGCGTAGCAAATA+TGG	+	tig0022086:74141-74160	Msa1396820:CDS	40.0%
!!!	TATGGTTGGACTGCTTTTTG+TGG	+	tig0022086:74159-74178	Msa1396820:CDS	40.0%
!	GGTATATGTGCCTTTGTTTC+GGG	-	tig0022086:74807-74826	None:intergenic	40.0%
!	CGGTATATGTGCCTTTGTTT+CGG	-	tig0022086:74808-74827	None:intergenic	40.0%
!	GTATCTAAGACCCTAGGTTA+GGG	+	tig0022086:74911-74930	Msa1396820:three_prime_UTR	40.0%
!	TATCTAAGACCCTAGGTTAG+GGG	+	tig0022086:74912-74931	Msa1396820:three_prime_UTR	40.0%
	CATCTACCGAAGTTGTTACT+AGG	+	tig0022086:75010-75029	Msa1396820:three_prime_UTR	40.0%
	AGTCTACCTTGCACAACTTT+GGG	-	tig0022086:75082-75101	None:intergenic	40.0%
	TAGTCTACCTTGCACAACTT+TGG	-	tig0022086:75083-75102	None:intergenic	40.0%
	GTTAATCGAACAGTTGTAGC+TGG	-	tig0022086:75137-75156	None:intergenic	40.0%
	GTCAGAGTGCAAACAACGTT+AGG	+	tig0022086:74028-74047	Msa1396820:CDS	45.0%
	CCAAGTAGCACAGTATACAC+TGG	-	tig0022086:74106-74125	None:intergenic	45.0%
!	CCAGTGTATACTGTGCTACT+TGG	+	tig0022086:74103-74122	Msa1396820:CDS	45.0%
	CATGGCGTAGCAAATATGGT+TGG	+	tig0022086:74145-74164	Msa1396820:CDS	45.0%
	GTATTCGTCACCTGCATCAT+CGG	-	tig0022086:74478-74497	None:intergenic	45.0%
!	TCAGGTAACGGTGAGAATAG+TGG	+	tig0022086:74510-74529	Msa1396820:CDS	45.0%
!!	ATAGTGGACCAGTGCTCAAA+TGG	+	tig0022086:74526-74545	Msa1396820:CDS	45.0%
	AATGGACAGGGTTACCAGAA+GGG	+	tig0022086:74592-74611	Msa1396820:CDS	45.0%
	TAACTGTAAGGTGACCCTTC+TGG	-	tig0022086:74609-74628	None:intergenic	45.0%
	GGTTCACTAGATAGTGCATG+CGG	-	tig0022086:74828-74847	None:intergenic	45.0%
	ATGATTTCGCACTTGTACGC+AGG	-	tig0022086:74849-74868	None:intergenic	45.0%
	ATGTGAACATTCACGTCCAG+CGG	+	tig0022086:74887-74906	Msa1396820:three_prime_UTR	45.0%
!	CGTATCTAAGACCCTAGGTT+AGG	+	tig0022086:74910-74929	Msa1396820:three_prime_UTR	45.0%
!	ATCTAAGACCCTAGGTTAGG+GGG	+	tig0022086:74913-74932	Msa1396820:three_prime_UTR	45.0%
!!	GCTCTCTTTAAGACGTTTCG+TGG	+	tig0022086:75051-75070	Msa1396820:three_prime_UTR	45.0%
!!!	TAGCTGGGCTTGTTTTATCC+TGG	-	tig0022086:75121-75140	None:intergenic	45.0%
	TTGATCGAAGCCACTCGATA+CGG	+	tig0022086:75214-75233	Msa1396820:three_prime_UTR	45.0%
	GTCAGAGTGCAAACAACGTT+AGG	+	tig0022086:74028-74047	Msa1396820:CDS	45.0%
	CCAAGTAGCACAGTATACAC+TGG	-	tig0022086:74106-74125	None:intergenic	45.0%
!	CCAGTGTATACTGTGCTACT+TGG	+	tig0022086:74103-74122	Msa1396820:CDS	45.0%
	CATGGCGTAGCAAATATGGT+TGG	+	tig0022086:74145-74164	Msa1396820:CDS	45.0%
	GTATTCGTCACCTGCATCAT+CGG	-	tig0022086:74478-74497	None:intergenic	45.0%
!	TCAGGTAACGGTGAGAATAG+TGG	+	tig0022086:74510-74529	Msa1396820:CDS	45.0%
!!	ATAGTGGACCAGTGCTCAAA+TGG	+	tig0022086:74526-74545	Msa1396820:CDS	45.0%
	AATGGACAGGGTTACCAGAA+GGG	+	tig0022086:74592-74611	Msa1396820:CDS	45.0%
	TAACTGTAAGGTGACCCTTC+TGG	-	tig0022086:74609-74628	None:intergenic	45.0%
	GGTTCACTAGATAGTGCATG+CGG	-	tig0022086:74828-74847	None:intergenic	45.0%
	ATGATTTCGCACTTGTACGC+AGG	-	tig0022086:74849-74868	None:intergenic	45.0%
	ATGTGAACATTCACGTCCAG+CGG	+	tig0022086:74887-74906	Msa1396820:three_prime_UTR	45.0%
!	CGTATCTAAGACCCTAGGTT+AGG	+	tig0022086:74910-74929	Msa1396820:three_prime_UTR	45.0%
!	ATCTAAGACCCTAGGTTAGG+GGG	+	tig0022086:74913-74932	Msa1396820:three_prime_UTR	45.0%
!!	GCTCTCTTTAAGACGTTTCG+TGG	+	tig0022086:75051-75070	Msa1396820:three_prime_UTR	45.0%
!!!	TAGCTGGGCTTGTTTTATCC+TGG	-	tig0022086:75121-75140	None:intergenic	45.0%
	TTGATCGAAGCCACTCGATA+CGG	+	tig0022086:75214-75233	Msa1396820:three_prime_UTR	45.0%
	TCACTAGCATCGTTCCCACA+AGG	-	tig0022086:74005-74024	None:intergenic	50.0%
	ATGCAAACCAGCCCTTGTCA+TGG	+	tig0022086:74127-74146	Msa1396820:CDS	50.0%
!!!	ACTGCTTTTTGTGGACCAGC+TGG	+	tig0022086:74168-74187	Msa1396820:CDS	50.0%
!!!	CTGCTTTTTGTGGACCAGCT+GGG	+	tig0022086:74169-74188	Msa1396820:CDS	50.0%
	CCAACAGGCAGAGATTCTTG+CGG	+	tig0022086:74192-74211	Msa1396820:CDS	50.0%
	CAGGTGACGAATACTGCAAC+TGG	+	tig0022086:74484-74503	Msa1396820:intron	50.0%
	GAATACTGCAACTGGTGCTC+AGG	+	tig0022086:74492-74511	Msa1396820:CDS	50.0%
	TGCAACTGGTGCTCAGGTAA+CGG	+	tig0022086:74498-74517	Msa1396820:CDS	50.0%
	CTTCTGGTAACCCTGTCCAT+TGG	-	tig0022086:74593-74612	None:intergenic	50.0%
	CAATGGACAGGGTTACCAGA+AGG	+	tig0022086:74591-74610	Msa1396820:CDS	50.0%
!	TACTAGGTTGAGTCACGACC+AGG	+	tig0022086:75026-75045	Msa1396820:three_prime_UTR	50.0%
	ACGTCTTAAAGAGAGCGACC+TGG	-	tig0022086:75047-75066	None:intergenic	50.0%
	GCACTACCCAAAGTTGTGCA+AGG	+	tig0022086:75073-75092	Msa1396820:three_prime_UTR	50.0%
!!!	GGCTTGTTTTATCCTGGAGG+CGG	-	tig0022086:75115-75134	None:intergenic	50.0%
!!!	CTGGGCTTGTTTTATCCTGG+AGG	-	tig0022086:75118-75137	None:intergenic	50.0%
	TCACTAGCATCGTTCCCACA+AGG	-	tig0022086:74005-74024	None:intergenic	50.0%
	ATGCAAACCAGCCCTTGTCA+TGG	+	tig0022086:74127-74146	Msa1396820:CDS	50.0%
!!!	ACTGCTTTTTGTGGACCAGC+TGG	+	tig0022086:74168-74187	Msa1396820:CDS	50.0%
!!!	CTGCTTTTTGTGGACCAGCT+GGG	+	tig0022086:74169-74188	Msa1396820:CDS	50.0%
	CCAACAGGCAGAGATTCTTG+CGG	+	tig0022086:74192-74211	Msa1396820:CDS	50.0%
	CAGGTGACGAATACTGCAAC+TGG	+	tig0022086:74484-74503	Msa1396820:intron	50.0%
	GAATACTGCAACTGGTGCTC+AGG	+	tig0022086:74492-74511	Msa1396820:CDS	50.0%
	TGCAACTGGTGCTCAGGTAA+CGG	+	tig0022086:74498-74517	Msa1396820:CDS	50.0%
	CTTCTGGTAACCCTGTCCAT+TGG	-	tig0022086:74593-74612	None:intergenic	50.0%
	CAATGGACAGGGTTACCAGA+AGG	+	tig0022086:74591-74610	Msa1396820:CDS	50.0%
!	TACTAGGTTGAGTCACGACC+AGG	+	tig0022086:75026-75045	Msa1396820:three_prime_UTR	50.0%
	ACGTCTTAAAGAGAGCGACC+TGG	-	tig0022086:75047-75066	None:intergenic	50.0%
	GCACTACCCAAAGTTGTGCA+AGG	+	tig0022086:75073-75092	Msa1396820:three_prime_UTR	50.0%
!!!	GGCTTGTTTTATCCTGGAGG+CGG	-	tig0022086:75115-75134	None:intergenic	50.0%
!!!	CTGGGCTTGTTTTATCCTGG+AGG	-	tig0022086:75118-75137	None:intergenic	50.0%
	GTGGGAACGATGCTAGTGAG+TGG	+	tig0022086:74006-74025	Msa1396820:CDS	55.0%
	CCGCAAGAATCTCTGCCTGT+TGG	-	tig0022086:74195-74214	None:intergenic	55.0%
!	GTGGTGATGACCGATGATGC+AGG	+	tig0022086:74465-74484	Msa1396820:intron	55.0%
	GTGGACCAGTGCTCAAATGG+TGG	+	tig0022086:74529-74548	Msa1396820:CDS	55.0%
	CCAGTCCACCATTTGAGCAC+TGG	-	tig0022086:74537-74556	None:intergenic	55.0%
!!	CCAGTGCTCAAATGGTGGAC+TGG	+	tig0022086:74534-74553	Msa1396820:CDS	55.0%
	TAGGGTCTTAGATACGCCGC+TGG	-	tig0022086:74906-74925	None:intergenic	55.0%
!	AGCGGCGTATCTAAGACCCT+AGG	+	tig0022086:74905-74924	Msa1396820:three_prime_UTR	55.0%
	AGTTCGCACCCCCTAACCTA+GGG	-	tig0022086:74924-74943	None:intergenic	55.0%
	AAGTTCGCACCCCCTAACCT+AGG	-	tig0022086:74925-74944	None:intergenic	55.0%
	CGGTTACGTACCGTATCGAG+TGG	-	tig0022086:75227-75246	None:intergenic	55.0%
	GTGGGAACGATGCTAGTGAG+TGG	+	tig0022086:74006-74025	Msa1396820:CDS	55.0%
	CCGCAAGAATCTCTGCCTGT+TGG	-	tig0022086:74195-74214	None:intergenic	55.0%
!	GTGGTGATGACCGATGATGC+AGG	+	tig0022086:74465-74484	Msa1396820:intron	55.0%
	GTGGACCAGTGCTCAAATGG+TGG	+	tig0022086:74529-74548	Msa1396820:CDS	55.0%
	CCAGTCCACCATTTGAGCAC+TGG	-	tig0022086:74537-74556	None:intergenic	55.0%
!!	CCAGTGCTCAAATGGTGGAC+TGG	+	tig0022086:74534-74553	Msa1396820:CDS	55.0%
	TAGGGTCTTAGATACGCCGC+TGG	-	tig0022086:74906-74925	None:intergenic	55.0%
!	AGCGGCGTATCTAAGACCCT+AGG	+	tig0022086:74905-74924	Msa1396820:three_prime_UTR	55.0%
	AGTTCGCACCCCCTAACCTA+GGG	-	tig0022086:74924-74943	None:intergenic	55.0%
	AAGTTCGCACCCCCTAACCT+AGG	-	tig0022086:74925-74944	None:intergenic	55.0%
	CGGTTACGTACCGTATCGAG+TGG	-	tig0022086:75227-75246	None:intergenic	55.0%
	TGCTACGCCATGACAAGGGC+TGG	-	tig0022086:74137-74156	None:intergenic	60.0%
!	GTTTTATCCTGGAGGCGGCG+TGG	-	tig0022086:75110-75129	None:intergenic	60.0%
	TGCTACGCCATGACAAGGGC+TGG	-	tig0022086:74137-74156	None:intergenic	60.0%
!	GTTTTATCCTGGAGGCGGCG+TGG	-	tig0022086:75110-75129	None:intergenic	60.0%
	TGTGGACCAGCTGGGCCAAC+AGG	+	tig0022086:74177-74196	Msa1396820:CDS	65.0%
	TCTCTGCCTGTTGGCCCAGC+TGG	-	tig0022086:74186-74205	None:intergenic	65.0%
	CTATCAACCACGCCGCCTCC+AGG	+	tig0022086:75100-75119	Msa1396820:three_prime_UTR	65.0%
	TGTGGACCAGCTGGGCCAAC+AGG	+	tig0022086:74177-74196	Msa1396820:CDS	65.0%
	TCTCTGCCTGTTGGCCCAGC+TGG	-	tig0022086:74186-74205	None:intergenic	65.0%
	CTATCAACCACGCCGCCTCC+AGG	+	tig0022086:75100-75119	Msa1396820:three_prime_UTR	65.0%

Chromosome	Type	Strat	End	Strand	Name
tig0022086	gene	73897	75253	73897	ID=Msa1396820;Name=Msa1396820
tig0022086	mRNA	73897	75253	73897	ID=Msa1396820-mRNA-1;Parent=Msa1396820;Name=Msa1396820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=40\|1\|1\|1\|1\|1\|2\|542\|171
tig0022086	exon	73897	74227	73897	ID=Msa1396820-mRNA-1:exon:15702;Parent=Msa1396820-mRNA-1
tig0022086	exon	74487	75253	74487	ID=Msa1396820-mRNA-1:exon:15703;Parent=Msa1396820-mRNA-1
tig0022086	five_prime_UTR	73897	73936	73897	ID=Msa1396820-mRNA-1:five_prime_utr;Parent=Msa1396820-mRNA-1
tig0022086	CDS	73937	74227	73937	ID=Msa1396820-mRNA-1:cds;Parent=Msa1396820-mRNA-1
tig0022086	CDS	74487	74711	74487	ID=Msa1396820-mRNA-1:cds;Parent=Msa1396820-mRNA-1
tig0022086	three_prime_UTR	74712	75253	74712	ID=Msa1396820-mRNA-1:three_prime_utr;Parent=Msa1396820-mRNA-1

Gene Sequence

>Msa1396820

ATGAAACACACAAAAGAGAAAATGGAGAGCACACAGAGAACTTTGAGCTTGTTGGTTTTGTGTTTCCTTGTGGGAACGATGCTAGTGAGTGGTCAGAGTGCAAACAACGTTAGGGCAACATACAACAATTACAACCCTCAGAATATTAACTGGGATTACATTACTGCCAGTGTATACTGTGCTACTTGGGATGCAAACCAGCCCTTGTCATGGCGTAGCAAATATGGTTGGACTGCTTTTTGTGGACCAGCTGGGCCAACAGGCAGAGATTCTTGCGGCAAATGCTTGAGTGTGACGAATACTGCAACTGGTGCTCAGGTAACGGTGAGAATAGTGGACCAGTGCTCAAATGGTGGACTGGACTTAGATGTGAATGTCTTCAATCAAATTGATACCAATGGACAGGGTTACCAGAAGGGTCACCTTACAGTTAACTATAGCTTTGTTAATTGCAACGGTGATTTATTGACTCATCACTGGTGTAATAATTCACTCTTTGTACAAATAAGTAGCTAG

Protein sequence

>Msa1396820

MKHTKEKMESTQRTLSLLVLCFLVGTMLVSGQSANNVRATYNNYNPQNINWDYITASVYCATWDANQPLSWRSKYGWTAFCGPAGPTGRDSCGKCLSVTNTATGAQVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGYQKGHLTVNYSFVNCNGDLLTHHWCNNSLFVQISS*